AlfalfaGEDB | MS.gene069852

M. sativa cultivar XinJiangDaYe / MS.gene069852

KEGG: K14484
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF02309.19

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene069852.t1	XP_003597715.1	94.8	310	14	2	1	309	18	326	1.90E-163	585.1

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene069852.t1	Q38826	51.1	307	113	5	6	308	45	318	2.2e-75	283.9

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene069852.t1	G7IUP2	94.8	310	14	2	1	309	18	326	1.4e-163	585.1

TFs/TRs:

Gene ID	Type	Classification
MS.gene069852.t1	TR	AUX/IAA

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene069852	0.811155	8.06E-51	-1.69E-46
MS.gene049350	MS.gene069852	0.822819	1.93E-53	-1.69E-46
MS.gene049418	MS.gene069852	0.811701	6.14E-51	-1.69E-46
MS.gene049711	MS.gene069852	0.840176	1.02E-57	-1.69E-46
MS.gene049807	MS.gene069852	0.814779	1.29E-51	-1.69E-46
MS.gene050901	MS.gene069852	0.816724	4.77E-52	-1.69E-46
MS.gene051018	MS.gene069852	0.847585	1.05E-59	-1.69E-46
MS.gene051279	MS.gene069852	0.852768	3.72E-61	-1.69E-46
MS.gene051648	MS.gene069852	0.84311	1.71E-58	-1.69E-46
MS.gene051664	MS.gene069852	0.853855	1.81E-61	-1.69E-46
MS.gene051719	MS.gene069852	0.8283	9.71E-55	-1.69E-46
MS.gene051720	MS.gene069852	0.860114	2.59E-63	-1.69E-46
MS.gene051744	MS.gene069852	0.824746	6.83E-54	-1.69E-46
MS.gene052150	MS.gene069852	0.807688	4.47E-50	-1.69E-46
MS.gene052151	MS.gene069852	0.822346	2.49E-53	-1.69E-46
MS.gene052516	MS.gene069852	0.815392	9.47E-52	-1.69E-46
MS.gene052628	MS.gene069852	0.801046	1.08E-48	-1.69E-46
MS.gene053122	MS.gene069852	0.806173	9.35E-50	-1.69E-46
MS.gene053144	MS.gene069852	0.867656	1.17E-65	-1.69E-46
MS.gene053226	MS.gene069852	0.823453	1.37E-53	-1.69E-46
MS.gene053536	MS.gene069852	0.837067	6.47E-57	-1.69E-46
MS.gene053538	MS.gene069852	0.83483	2.39E-56	-1.69E-46
MS.gene053581	MS.gene069852	0.814363	1.60E-51	-1.69E-46
MS.gene054584	MS.gene069852	0.859145	5.06E-63	-1.69E-46
MS.gene055083	MS.gene069852	0.827747	1.32E-54	-1.69E-46
MS.gene055144	MS.gene069852	0.807121	5.90E-50	-1.69E-46
MS.gene055465	MS.gene069852	0.840472	8.52E-58	-1.69E-46
MS.gene055466	MS.gene069852	0.835922	1.27E-56	-1.69E-46
MS.gene055468	MS.gene069852	0.805214	1.49E-49	-1.69E-46
MS.gene055513	MS.gene069852	0.801642	8.18E-49	-1.69E-46
MS.gene055537	MS.gene069852	0.883005	6.47E-71	-1.69E-46
MS.gene055580	MS.gene069852	-0.823407	1.41E-53	-1.69E-46
MS.gene056005	MS.gene069852	0.812637	3.84E-51	-1.69E-46
MS.gene056169	MS.gene069852	0.833023	6.77E-56	-1.69E-46
MS.gene056308	MS.gene069852	0.807961	3.91E-50	-1.69E-46
MS.gene05686	MS.gene069852	0.821279	4.39E-53	-1.69E-46
MS.gene057082	MS.gene069852	0.835217	1.91E-56	-1.69E-46
MS.gene057132	MS.gene069852	0.815164	1.06E-51	-1.69E-46
MS.gene058339	MS.gene069852	0.804352	2.25E-49	-1.69E-46
MS.gene058668	MS.gene069852	0.827497	1.51E-54	-1.69E-46
MS.gene05894	MS.gene069852	0.862629	4.42E-64	-1.69E-46
MS.gene059015	MS.gene069852	0.819901	9.10E-53	-1.69E-46
MS.gene059424	MS.gene069852	0.839612	1.43E-57	-1.69E-46
MS.gene059625	MS.gene069852	0.82273	2.03E-53	-1.69E-46
MS.gene060519	MS.gene069852	0.843817	1.11E-58	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene069852.t1	MTR_2g101500	94.839	310	14	2	1	309	18	326	0.0	601
MS.gene069852.t1	MTR_8g103030	56.090	312	85	10	8	309	24	293	2.16e-101	299
MS.gene069852.t1	MTR_5g030710	52.978	319	111	8	2	309	45	335	1.23e-100	299
MS.gene069852.t1	MTR_8g067530	52.681	317	112	8	2	309	69	356	1.62e-99	296
MS.gene069852.t1	MTR_6g488150	53.398	309	78	9	3	309	10	254	9.11e-92	273
MS.gene069852.t1	MTR_5g067350	51.887	318	114	11	2	309	59	347	2.02e-89	271
MS.gene069852.t1	MTR_1g070520	64.024	164	53	3	150	309	84	245	1.24e-65	206
MS.gene069852.t1	MTR_1g080860	44.156	308	101	8	6	309	13	253	1.61e-65	206
MS.gene069852.t1	MTR_7g096090	62.733	161	55	3	150	309	94	250	1.29e-64	204
MS.gene069852.t1	MTR_1g093240	62.112	161	58	2	150	309	78	236	1.59e-63	201
MS.gene069852.t1	MTR_1g080860	44.257	296	94	8	6	297	13	241	1.59e-61	196
MS.gene069852.t1	MTR_1g093240	63.087	149	52	2	150	297	78	224	1.55e-58	188
MS.gene069852.t1	MTR_1g040675	49.741	193	64	6	111	297	17	182	4.38e-51	167
MS.gene069852.t1	MTR_1g070830	44.248	226	100	5	73	297	1	201	3.94e-50	165
MS.gene069852.t1	MTR_1g076270	54.362	149	41	5	149	297	57	178	7.00e-46	153
MS.gene069852.t1	MTR_1g093350	54.362	149	41	5	149	297	57	178	7.00e-46	153
MS.gene069852.t1	MTR_1g093240	60.156	128	48	2	150	276	78	203	1.03e-45	154
MS.gene069852.t1	MTR_6g488150	45.887	231	59	9	3	231	10	176	1.50e-45	153
MS.gene069852.t1	MTR_5g067350	44.583	240	97	10	2	231	59	272	1.28e-43	150
MS.gene069852.t1	MTR_1g040675	47.093	172	58	6	111	276	17	161	2.82e-39	136
MS.gene069852.t1	MTR_1g069495	44.149	188	71	6	154	308	81	267	2.86e-36	131
MS.gene069852.t1	MTR_4g011880	49.669	151	44	5	153	301	52	172	4.98e-32	117
MS.gene069852.t1	MTR_2g100780	40.113	177	86	4	137	293	78	254	1.56e-31	119
MS.gene069852.t1	MTR_2g100780	40.113	177	86	4	137	293	78	254	2.30e-31	118
MS.gene069852.t1	MTR_2g102490	52.336	107	39	3	189	292	86	183	2.03e-29	111
MS.gene069852.t1	MTR_8g014520	41.401	157	77	3	152	293	104	260	2.19e-29	113
MS.gene069852.t1	MTR_8g014520	41.401	157	77	3	152	293	104	260	2.26e-29	113
MS.gene069852.t1	MTR_4g124300	34.899	149	64	7	149	291	60	181	1.52e-17	79.3
MS.gene069852.t1	MTR_3g106850	30.323	155	77	6	146	293	79	209	1.32e-16	77.4
MS.gene069852.t1	MTR_7g110790	39.423	104	49	3	187	290	66	155	3.19e-15	72.4
MS.gene069852.t1	MTR_1g085750	39.216	102	48	2	189	290	83	170	3.66e-15	72.8
MS.gene069852.t1	MTR_1g109510	30.137	146	80	4	146	290	44	168	7.10e-12	63.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene069852.t1	AT2G22670	51.140	307	113	5	6	308	62	335	3.64e-96	288
MS.gene069852.t1	AT2G22670	51.140	307	113	5	6	308	45	318	4.77e-96	286
MS.gene069852.t1	AT2G22670	51.140	307	113	5	6	308	45	318	4.77e-96	286
MS.gene069852.t1	AT4G29080	55.161	310	89	11	8	309	38	305	2.19e-94	282
MS.gene069852.t1	AT2G22670	50.489	307	113	6	6	308	45	316	7.15e-93	278
MS.gene069852.t1	AT2G22670	50.489	307	113	6	6	308	45	316	7.15e-93	278
MS.gene069852.t1	AT5G65670	50.327	306	116	8	6	306	59	333	2.01e-87	265
MS.gene069852.t1	AT5G65670	50.000	308	116	9	6	306	59	335	1.65e-85	260
MS.gene069852.t1	AT4G14550	42.951	305	94	6	8	309	1	228	1.82e-68	213
MS.gene069852.t1	AT3G04730	50.877	228	90	4	98	309	15	236	2.88e-66	207
MS.gene069852.t1	AT4G14550	42.662	293	88	6	8	297	1	216	1.27e-63	201
MS.gene069852.t1	AT3G23050	41.311	305	98	7	8	304	6	237	3.09e-61	195
MS.gene069852.t1	AT1G04250	51.232	203	86	5	110	308	35	228	1.32e-58	188
MS.gene069852.t1	AT4G14550	39.706	272	84	6	8	276	1	195	3.35e-50	165
MS.gene069852.t1	AT1G04240	56.376	149	44	4	149	297	58	185	3.20e-48	160
MS.gene069852.t1	AT5G43700	51.136	176	60	6	123	298	33	182	1.20e-47	158
MS.gene069852.t1	AT1G04240	56.000	150	45	4	148	297	157	285	2.05e-47	161
MS.gene069852.t1	AT3G23030	49.162	179	56	5	122	297	24	170	8.49e-45	150
MS.gene069852.t1	AT3G23030	49.162	179	56	5	122	297	111	257	4.49e-44	151
MS.gene069852.t1	AT3G23050	37.545	277	92	7	8	276	6	209	1.77e-43	148
MS.gene069852.t1	AT4G14560	54.545	154	40	3	141	294	41	164	6.79e-41	140
MS.gene069852.t1	AT1G52830	44.785	163	62	4	135	297	50	184	3.06e-40	139
MS.gene069852.t1	AT3G15540	49.390	164	56	6	142	302	56	195	6.05e-39	136
MS.gene069852.t1	AT4G28640	44.571	175	77	5	140	298	72	242	3.20e-36	130
MS.gene069852.t1	AT4G28640	44.509	173	76	5	140	296	72	240	5.02e-36	130
MS.gene069852.t1	AT4G28640	44.509	173	76	5	140	296	72	240	3.32e-35	129
MS.gene069852.t1	AT2G33310	39.894	188	88	2	132	300	53	234	4.42e-35	127
MS.gene069852.t1	AT2G33310	42.286	175	75	3	146	300	65	233	5.44e-35	127
MS.gene069852.t1	AT2G33310	42.286	175	75	3	146	300	65	233	5.44e-35	127
MS.gene069852.t1	AT1G15580	46.528	144	44	3	150	292	48	159	2.44e-34	123
MS.gene069852.t1	AT1G04550	40.741	189	81	5	143	309	57	236	5.76e-34	124
MS.gene069852.t1	AT3G16500	37.198	207	104	5	109	293	50	252	6.28e-32	120
MS.gene069852.t1	AT3G16500	37.198	207	104	5	109	293	50	252	7.16e-32	120
MS.gene069852.t1	AT5G25890	41.060	151	66	4	154	304	47	174	2.32e-29	110
MS.gene069852.t1	AT4G14550	35.841	226	67	5	8	230	1	151	2.73e-29	110
MS.gene069852.t1	AT1G51950	38.012	171	82	3	143	293	84	250	2.86e-28	110
MS.gene069852.t1	AT1G04100	38.922	167	74	4	157	297	95	259	3.85e-28	109
MS.gene069852.t1	AT3G23050	32.900	231	76	6	8	230	6	165	3.40e-24	97.1
MS.gene069852.t1	AT3G17600	37.241	145	63	6	147	290	37	154	4.74e-21	88.2
MS.gene069852.t1	AT3G62100	42.574	101	43	2	190	290	83	168	2.25e-18	81.3
MS.gene069852.t1	AT2G46990	41.584	101	44	2	190	290	85	170	7.98e-18	80.1
MS.gene069852.t1	AT4G32280	35.644	101	45	2	190	290	118	198	1.95e-14	71.2
MS.gene069852.t1	AT4G32280	28.571	168	69	4	154	290	93	240	3.34e-14	71.6
MS.gene069852.t1	AT3G62100	41.379	87	36	2	190	276	83	154	1.37e-13	67.8
MS.gene069852.t1	AT2G46990	41.379	87	36	2	190	276	85	156	1.93e-13	67.4
MS.gene069852.t1	AT1G15050	36.190	105	51	1	191	295	62	150	8.65e-12	62.8
MS.gene069852.t1	AT1G15050	36.190	105	51	1	191	295	94	182	1.67e-11	62.8
MS.gene069852.t1	AT2G01200	34.127	126	63	2	170	295	83	188	2.20e-11	62.4
MS.gene069852.t1	AT2G01200	34.127	126	63	2	170	295	83	188	2.20e-11	62.4

Find 72 sgRNAs with CRISPR-Local

Find 125 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TGCAATTCTCCTGGACTTCC+TGG	0.219552	2.1:+3733183	MS.gene069852:CDS
TGCTTGTAGGTGATGTTCCT+TGG	0.297899	2.1:+3733295	MS.gene069852:CDS
GATGCCATTGATGAGTCTTC+TGG	0.307952	2.1:+3732030	MS.gene069852:CDS
GAAAAGAATAAACAGGTTAA+TGG	0.313899	2.1:+3732222	MS.gene069852:CDS
CTGTAATAGGGCACAGGTTG+TGG	0.328430	2.1:+3732677	MS.gene069852:intron
GCTTGTAGGTGATGTTCCTT+GGG	0.334696	2.1:+3733296	MS.gene069852:CDS
CAAGACCTACAACAACTATA+TGG	0.360524	2.1:+3732848	MS.gene069852:CDS
ATGAAAGGCTCCGAGGCAAT+TGG	0.372758	2.1:+3733599	MS.gene069852:CDS
AATGTTCTTCAAATCCTTGT+TGG	0.373464	2.1:-3731944	None:intergenic
TCTTTGAGGGATCTTCTTCA+TGG	0.378941	2.1:+3733228	MS.gene069852:CDS
ATCTTCTTCTCTCAACTTCA+AGG	0.387877	2.1:+3731831	MS.gene069852:CDS
TCTCTATGTAAAAGTCAGTA+TGG	0.396729	2.1:+3732794	MS.gene069852:CDS
AAGTTCCATATAGTTGTTGT+AGG	0.402215	2.1:-3732853	None:intergenic
TTGATGAGTCTTCTGGGAAA+TGG	0.428366	2.1:+3732037	MS.gene069852:CDS
AGATCAACCTTTCTGAGATA+AGG	0.437164	2.1:-3732825	None:intergenic
TTTCCAACATTCCCTCCTCT+TGG	0.438896	2.1:-3732105	None:intergenic
ATGAAGATAAAGATGGAGAT+TGG	0.439416	2.1:+3733271	MS.gene069852:CDS
CCTGGACTTCCTGGGAAAGA+TGG	0.446287	2.1:+3733192	MS.gene069852:CDS
ATGCCATTGATGAGTCTTCT+GGG	0.457749	2.1:+3732031	MS.gene069852:CDS
TGTACATGAAAAGAATAAAC+AGG	0.460606	2.1:+3732215	MS.gene069852:CDS
TGTAATAGGGCACAGGTTGT+GGG	0.465911	2.1:+3732678	MS.gene069852:intron
GACTAAGTGAGAGCTCTTTG+AGG	0.466933	2.1:+3733214	MS.gene069852:CDS
TCAGGTCAATGCAATTCTCC+TGG	0.470704	2.1:+3733174	MS.gene069852:intron
CAAGAGCCATGGGAAAATCT+AGG	0.474403	2.1:+3733902	MS.gene069852:CDS
CCATCTTTCCCAGGAAGTCC+AGG	0.476059	2.1:-3733192	None:intergenic
AAGAACCTTGTAGCTAGTGT+TGG	0.483602	2.1:+3731988	MS.gene069852:CDS
TGAAAGGCTCCGAGGCAATT+GGG	0.483983	2.1:+3733600	MS.gene069852:CDS
CCGACTCGTGTAGGAGACTA+AGG	0.487592	2.1:+3733573	MS.gene069852:CDS
TTTCGAAACGATCGAATTGG+TGG	0.491043	2.1:-3732705	None:intergenic
ACATAGAGACAGTCAAATCC+TGG	0.496327	2.1:-3732780	None:intergenic
GTTAGTACCAATGGTAAAGC+AGG	0.504295	2.1:-3732901	None:intergenic
TCAGTTGCTACTGCTGCTGC+TGG	0.505717	2.1:+3731904	MS.gene069852:CDS
GATGGAGATTGGATGCTTGT+AGG	0.506785	2.1:+3733282	MS.gene069852:CDS
CTATCAGGAGATTCACAACC+AGG	0.513603	2.1:-3731877	None:intergenic
GAGCTCAGACTAGGCTTACC+TGG	0.513881	2.1:+3731859	MS.gene069852:CDS
TGGAGTTTCTCTATGAATGA+TGG	0.515427	2.1:+3732057	MS.gene069852:CDS
GCTAGTGTTGGAGCTAAAAG+AGG	0.516388	2.1:+3732000	MS.gene069852:CDS
GTTGCTACTGCTGCTGCTGG+TGG	0.518150	2.1:+3731907	MS.gene069852:CDS
TAGCTCCAACACTAGCTACA+AGG	0.519601	2.1:-3731993	None:intergenic
GGCTCCGAGGCAATTGGGCT+AGG	0.521923	2.1:+3733605	MS.gene069852:CDS
GATGAAGCTGAGGGAAAACC+AGG	0.522587	2.1:+3732762	MS.gene069852:CDS
ATGTTCACCTGCTTTACCAT+TGG	0.525163	2.1:+3732894	MS.gene069852:CDS
TCTCCAAGAGGAGGGAATGT+TGG	0.528075	2.1:+3732102	MS.gene069852:CDS
TCACTTAGTCCATCTTTCCC+AGG	0.528669	2.1:-3733201	None:intergenic
ACTAAGTGAGAGCTCTTTGA+GGG	0.537995	2.1:+3733215	MS.gene069852:CDS
GCAATTCTCCTGGACTTCCT+GGG	0.538453	2.1:+3733184	MS.gene069852:CDS
CTTACATATGAAGATAAAGA+TGG	0.540325	2.1:+3733264	MS.gene069852:CDS
CATACCTAGCCCAATTGCCT+CGG	0.543011	2.1:-3733609	None:intergenic
GTTTGCAGCTCCAAGAGCCA+TGG	0.546429	2.1:+3733891	MS.gene069852:intron
TATGTAAAAGTCAGTATGGA+TGG	0.548265	2.1:+3732798	MS.gene069852:CDS
AGTCTCTTTCTTTGCCAACA+AGG	0.555451	2.1:+3731930	MS.gene069852:CDS
AAAGAAACATACTTTGCAGC+AGG	0.558479	2.1:-3732267	None:intergenic
TTTGCAGCTCCAAGAGCCAT+GGG	0.568102	2.1:+3733892	MS.gene069852:intron
TCTATGAATGATGGATCTGA+AGG	0.572939	2.1:+3732066	MS.gene069852:CDS
AAGGAAACTGAGCTCAGACT+AGG	0.575995	2.1:+3731850	MS.gene069852:CDS
AAACTTCTGTAATAGGGCAC+AGG	0.579506	2.1:+3732671	MS.gene069852:intron
TGGTGCTCCTTATCTCAGAA+AGG	0.583817	2.1:+3732818	MS.gene069852:CDS
TTTCCCAGAAGACTCATCAA+TGG	0.587418	2.1:-3732034	None:intergenic
GTTTGTTCTCTCCAAGAGGA+GGG	0.594139	2.1:+3732094	MS.gene069852:CDS
AAAGAACAATGATGAAGCTG+AGG	0.598000	2.1:+3732752	MS.gene069852:CDS
GGTTTGTTCTCTCCAAGAGG+AGG	0.598726	2.1:+3732093	MS.gene069852:CDS
GGATGTTCGCCGACTCGTGT+AGG	0.604960	2.1:+3733564	MS.gene069852:intron
AATGATGGATCTGAAGGAGC+TGG	0.608371	2.1:+3732072	MS.gene069852:CDS
CTAGCTACAAGGTTCTTCAA+AGG	0.626425	2.1:-3731982	None:intergenic
ATAGGGCACAGGTTGTGGGA+TGG	0.638025	2.1:+3732682	MS.gene069852:intron
AAGAACAATGATGAAGCTGA+GGG	0.641734	2.1:+3732753	MS.gene069852:CDS
GCTGGTTTGTTCTCTCCAAG+AGG	0.643608	2.1:+3732090	MS.gene069852:CDS
CCTTAGTCTCCTACACGAGT+CGG	0.654169	2.1:-3733573	None:intergenic
AGGAGACTAAGGATCATGAA+AGG	0.655773	2.1:+3733584	MS.gene069852:CDS
CTTGTAGGTGATGTTCCTTG+GGG	0.665765	2.1:+3733297	MS.gene069852:CDS
TTGTAGGTGATGTTCCTTGG+GGG	0.698490	2.1:+3733298	MS.gene069852:CDS
AAGGATCATGAAAGGCTCCG+AGG	0.730710	2.1:+3733592	MS.gene069852:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TTTTTTGTTTGTTTTTTTAT+GGG	+	chr2.1:3732444-3732463	MS.gene069852:intron	10.0%
!!!	AAATTATTTACATGTGTTTT+AGG	+	chr2.1:3732995-3733014	MS.gene069852:intron	15.0%
!!!	GTTTTTTGTTTGTTTTTTTA+TGG	+	chr2.1:3732443-3732462	MS.gene069852:intron	15.0%
!!	AAAAAAATCATGTCTATTCA+AGG	-	chr2.1:3732491-3732510	None:intergenic	20.0%
!!	AAAAAATCATGTCTATTCAA+GGG	-	chr2.1:3732490-3732509	None:intergenic	20.0%
!!	AATAGTGGTTAATGAATATT+TGG	+	chr2.1:3732587-3732606	MS.gene069852:intron	20.0%
!!	ATAGTGGTTAATGAATATTT+GGG	+	chr2.1:3732588-3732607	MS.gene069852:intron	20.0%
!!	ATATCTTGTAATCTTTGATA+TGG	+	chr2.1:3733811-3733830	MS.gene069852:intron	20.0%
!!	CATGTATAATTCAAAAATAG+TGG	+	chr2.1:3732572-3732591	MS.gene069852:intron	20.0%
!!	GTGTGTAAAAAATCAAAATA+AGG	-	chr2.1:3732957-3732976	None:intergenic	20.0%
!!	TAAAATAAACAACAAAAGTC+TGG	-	chr2.1:3733718-3733737	None:intergenic	20.0%
!!!	ATTTTACAGCAAGTAAAAAA+AGG	-	chr2.1:3732979-3732998	None:intergenic	20.0%
!!!	CACTATTTTTGAATTATACA+TGG	-	chr2.1:3732574-3732593	None:intergenic	20.0%
!	AAAATCAAAATAAGGAGCTA+AGG	-	chr2.1:3732949-3732968	None:intergenic	25.0%
!	ACAATCTAATAATTGTAGTG+CGG	-	chr2.1:3733789-3733808	None:intergenic	25.0%
!	ATATTCGTATTCCTAAAATC+AGG	+	chr2.1:3733156-3733175	MS.gene069852:intron	25.0%
!	CAAAAAAAAGTAAACAGAAC+AGG	-	chr2.1:3732338-3732357	None:intergenic	25.0%
!	CTTACATATGAAGATAAAGA+TGG	+	chr2.1:3733264-3733283	MS.gene069852:CDS	25.0%
!	GAAAAGAATAAACAGGTTAA+TGG	+	chr2.1:3732222-3732241	MS.gene069852:CDS	25.0%
!	TAAGGTAAGTAATTTGAAGA+AGG	-	chr2.1:3732931-3732950	None:intergenic	25.0%
!	TGTACATGAAAAGAATAAAC+AGG	+	chr2.1:3732215-3732234	MS.gene069852:CDS	25.0%
!	TGTATCAAACTTCTGTAATA+GGG	+	chr2.1:3732665-3732684	MS.gene069852:intron	25.0%
!	TTGTATCAAACTTCTGTAAT+AGG	+	chr2.1:3732664-3732683	MS.gene069852:intron	25.0%
!!	ATTTCTTTTTATTCGCTGTT+TGG	+	chr2.1:3733327-3733346	MS.gene069852:intron	25.0%
!!	TTACACTCTAGATTTGTTTA+AGG	+	chr2.1:3733637-3733656	MS.gene069852:intron	25.0%
!!!	AAGTTGACTTATTTTGTCTT+TGG	-	chr2.1:3733427-3733446	None:intergenic	25.0%
!!!	ACATGATTTTTTTCTCTCTT+TGG	+	chr2.1:3732498-3732517	MS.gene069852:intron	25.0%
	AAGTTCCATATAGTTGTTGT+AGG	-	chr2.1:3732856-3732875	None:intergenic	30.0%
	AATGTTCTTCAAATCCTTGT+TGG	-	chr2.1:3731947-3731966	None:intergenic	30.0%
	AATGTTGGAAAAACTCTTGT+TGG	+	chr2.1:3732117-3732136	MS.gene069852:CDS	30.0%
	AATTAACTGTGTAACCAAAC+AGG	-	chr2.1:3733088-3733107	None:intergenic	30.0%
	ATGAAGATAAAGATGGAGAT+TGG	+	chr2.1:3733271-3733290	MS.gene069852:CDS	30.0%
	CAATCTAATAATTGTAGTGC+GGG	-	chr2.1:3733788-3733807	None:intergenic	30.0%
	CAGCTTAATTAAGCACTTAT+AGG	+	chr2.1:3733355-3733374	MS.gene069852:intron	30.0%
	TAATCTTTGATATGGATCAC+TGG	+	chr2.1:3733819-3733838	MS.gene069852:intron	30.0%
	TACAGAAGTTTGATACAATG+AGG	-	chr2.1:3732662-3732681	None:intergenic	30.0%
	TATCTTATCTAGATCCTGTT+TGG	+	chr2.1:3733071-3733090	MS.gene069852:intron	30.0%
	TATGTAAAAGTCAGTATGGA+TGG	+	chr2.1:3732798-3732817	MS.gene069852:CDS	30.0%
	TCTCTATGTAAAAGTCAGTA+TGG	+	chr2.1:3732794-3732813	MS.gene069852:CDS	30.0%
	TGCAACAAAAAACATCAAAG+AGG	+	chr2.1:3732179-3732198	MS.gene069852:CDS	30.0%
!	AATCGGCTTAACTAAATTGT+TGG	+	chr2.1:3733533-3733552	MS.gene069852:intron	30.0%
!	CTTTTGTTCATGTCATGTTT+TGG	+	chr2.1:3732364-3732383	MS.gene069852:intron	30.0%
!!	AATTGCATTGACCTGATTTT+AGG	-	chr2.1:3733170-3733189	None:intergenic	30.0%
!!	AGCTTCAATATGAAAGTGTT+TGG	-	chr2.1:3733484-3733503	None:intergenic	30.0%
!!	GCTTCAATATGAAAGTGTTT+GGG	-	chr2.1:3733483-3733502	None:intergenic	30.0%
!!!	ATGGATCACTGGTTTTATAT+TGG	+	chr2.1:3733830-3733849	MS.gene069852:intron	30.0%
!!!	ATTTGGGTTGTTTTCAGAAA+AGG	+	chr2.1:3732604-3732623	MS.gene069852:intron	30.0%
!!!	TTTTTTCGAAACGATCGAAT+TGG	-	chr2.1:3732711-3732730	None:intergenic	30.0%
	AAAGAAACATACTTTGCAGC+AGG	-	chr2.1:3732270-3732289	None:intergenic	35.0%
	AAAGAAATAACTTACCCCCA+AGG	-	chr2.1:3733315-3733334	None:intergenic	35.0%
	AAAGAACAATGATGAAGCTG+AGG	+	chr2.1:3732752-3732771	MS.gene069852:CDS	35.0%
	AAGAACAATGATGAAGCTGA+GGG	+	chr2.1:3732753-3732772	MS.gene069852:CDS	35.0%
	ATCGTTTCGAAAAAACACGA+TGG	+	chr2.1:3732716-3732735	MS.gene069852:CDS	35.0%
	ATCTTCTTCTCTCAACTTCA+AGG	+	chr2.1:3731831-3731850	MS.gene069852:CDS	35.0%
	CAAGACCTACAACAACTATA+TGG	+	chr2.1:3732848-3732867	MS.gene069852:CDS	35.0%
	CTTTCACCTTTGTCTAATCT+AGG	-	chr2.1:3732393-3732412	None:intergenic	35.0%
	GAAGGTAAAGTTAGTACCAA+TGG	-	chr2.1:3732913-3732932	None:intergenic	35.0%
	GTTAAATCGTGATAGTCCAA+TGG	+	chr2.1:3733507-3733526	MS.gene069852:intron	35.0%
	TGATAGTCCAATGGTTGAAT+CGG	+	chr2.1:3733516-3733535	MS.gene069852:intron	35.0%
	TGGAGTTTCTCTATGAATGA+TGG	+	chr2.1:3732057-3732076	MS.gene069852:CDS	35.0%
	TGGTTACCTAGATTAGACAA+AGG	+	chr2.1:3732384-3732403	MS.gene069852:intron	35.0%
	TTACATGAGAAAGTCAAGCT+AGG	-	chr2.1:3733030-3733049	None:intergenic	35.0%
!	ACTAAATTGTTGGTTGATGC+AGG	+	chr2.1:3733543-3733562	MS.gene069852:intron	35.0%
!!	AGATCAACCTTTCTGAGATA+AGG	-	chr2.1:3732828-3732847	None:intergenic	35.0%
!!	GTAGCAACTGATTTTCTATC+AGG	-	chr2.1:3731895-3731914	None:intergenic	35.0%
!!	TCTATGAATGATGGATCTGA+AGG	+	chr2.1:3732066-3732085	MS.gene069852:CDS	35.0%
	AAACTTCTGTAATAGGGCAC+AGG	+	chr2.1:3732671-3732690	MS.gene069852:intron	40.0%
	AAGAACCTTGTAGCTAGTGT+TGG	+	chr2.1:3731988-3732007	MS.gene069852:CDS	40.0%
	ACATAGAGACAGTCAAATCC+TGG	-	chr2.1:3732783-3732802	None:intergenic	40.0%
	ACTAAGTGAGAGCTCTTTGA+GGG	+	chr2.1:3733215-3733234	MS.gene069852:CDS	40.0%
	AGGAGACTAAGGATCATGAA+AGG	+	chr2.1:3733584-3733603	MS.gene069852:CDS	40.0%
	AGTCTCTTTCTTTGCCAACA+AGG	+	chr2.1:3731930-3731949	MS.gene069852:CDS	40.0%
	ATGCCATTGATGAGTCTTCT+GGG	+	chr2.1:3732031-3732050	MS.gene069852:CDS	40.0%
	ATGTTCACCTGCTTTACCAT+TGG	+	chr2.1:3732894-3732913	MS.gene069852:CDS	40.0%
	CTAGCTACAAGGTTCTTCAA+AGG	-	chr2.1:3731985-3732004	None:intergenic	40.0%
	GTTAGTACCAATGGTAAAGC+AGG	-	chr2.1:3732904-3732923	None:intergenic	40.0%
	TTTCCCAGAAGACTCATCAA+TGG	-	chr2.1:3732037-3732056	None:intergenic	40.0%
	TTTCGAAACGATCGAATTGG+TGG	-	chr2.1:3732708-3732727	None:intergenic	40.0%
!	AGTTAAGCCGATTCAACCAT+TGG	-	chr2.1:3733526-3733545	None:intergenic	40.0%
!	TCTTTGAGGGATCTTCTTCA+TGG	+	chr2.1:3733228-3733247	MS.gene069852:CDS	40.0%
!	TTGATGAGTCTTCTGGGAAA+TGG	+	chr2.1:3732037-3732056	MS.gene069852:CDS	40.0%
	AAGGAAACTGAGCTCAGACT+AGG	+	chr2.1:3731850-3731869	MS.gene069852:CDS	45.0%
	CAAGAGCCATGGGAAAATCT+AGG	+	chr2.1:3733902-3733921	MS.gene069852:CDS	45.0%
	CTATCAGGAGATTCACAACC+AGG	-	chr2.1:3731880-3731899	None:intergenic	45.0%
	CTTGTAGGTGATGTTCCTTG+GGG	+	chr2.1:3733297-3733316	MS.gene069852:CDS	45.0%
	GACTAAGTGAGAGCTCTTTG+AGG	+	chr2.1:3733214-3733233	MS.gene069852:CDS	45.0%
	GATGCCATTGATGAGTCTTC+TGG	+	chr2.1:3732030-3732049	MS.gene069852:CDS	45.0%
	GATGGAGATTGGATGCTTGT+AGG	+	chr2.1:3733282-3733301	MS.gene069852:CDS	45.0%
	GCTTGTAGGTGATGTTCCTT+GGG	+	chr2.1:3733296-3733315	MS.gene069852:CDS	45.0%
	GTTTGTTCTCTCCAAGAGGA+GGG	+	chr2.1:3732094-3732113	MS.gene069852:CDS	45.0%
	TAGCTCCAACACTAGCTACA+AGG	-	chr2.1:3731996-3732015	None:intergenic	45.0%
	TCACTTAGTCCATCTTTCCC+AGG	-	chr2.1:3733204-3733223	None:intergenic	45.0%
	TCAGGTCAATGCAATTCTCC+TGG	+	chr2.1:3733174-3733193	MS.gene069852:intron	45.0%
	TGCTTGTAGGTGATGTTCCT+TGG	+	chr2.1:3733295-3733314	MS.gene069852:CDS	45.0%
	TGGTGCTCCTTATCTCAGAA+AGG	+	chr2.1:3732818-3732837	MS.gene069852:CDS	45.0%
	TGTAATAGGGCACAGGTTGT+GGG	+	chr2.1:3732678-3732697	MS.gene069852:intron	45.0%
	TTGTAGGTGATGTTCCTTGG+GGG	+	chr2.1:3733298-3733317	MS.gene069852:CDS	45.0%
	TTTCCAACATTCCCTCCTCT+TGG	-	chr2.1:3732108-3732127	None:intergenic	45.0%
!	CTAGATTTTCCCATGGCTCT+TGG	-	chr2.1:3733904-3733923	None:intergenic	45.0%
!	GCTAGTGTTGGAGCTAAAAG+AGG	+	chr2.1:3732000-3732019	MS.gene069852:CDS	45.0%
!	TTGGCTCCTAGATTTTCCCA+TGG	-	chr2.1:3733911-3733930	None:intergenic	45.0%
!!	AATGATGGATCTGAAGGAGC+TGG	+	chr2.1:3732072-3732091	MS.gene069852:CDS	45.0%
	AAGGATCATGAAAGGCTCCG+AGG	+	chr2.1:3733592-3733611	MS.gene069852:CDS	50.0%
	ATGAAAGGCTCCGAGGCAAT+TGG	+	chr2.1:3733599-3733618	MS.gene069852:CDS	50.0%
	CATACCTAGCCCAATTGCCT+CGG	-	chr2.1:3733612-3733631	None:intergenic	50.0%
	CCTTAGTCTCCTACACGAGT+CGG	-	chr2.1:3733576-3733595	None:intergenic	50.0%
	CTGTAATAGGGCACAGGTTG+TGG	+	chr2.1:3732677-3732696	MS.gene069852:intron	50.0%
	GATGAAGCTGAGGGAAAACC+AGG	+	chr2.1:3732762-3732781	MS.gene069852:CDS	50.0%
	GCAATTCTCCTGGACTTCCT+GGG	+	chr2.1:3733184-3733203	MS.gene069852:CDS	50.0%
	TCTCCAAGAGGAGGGAATGT+TGG	+	chr2.1:3732102-3732121	MS.gene069852:CDS	50.0%
	TGAAAGGCTCCGAGGCAATT+GGG	+	chr2.1:3733600-3733619	MS.gene069852:CDS	50.0%
	TGCAATTCTCCTGGACTTCC+TGG	+	chr2.1:3733183-3733202	MS.gene069852:CDS	50.0%
	TTTGCAGCTCCAAGAGCCAT+GGG	+	chr2.1:3733892-3733911	MS.gene069852:intron	50.0%
!	GGTTTGTTCTCTCCAAGAGG+AGG	+	chr2.1:3732093-3732112	MS.gene069852:CDS	50.0%
!!	GCTGGTTTGTTCTCTCCAAG+AGG	+	chr2.1:3732090-3732109	MS.gene069852:CDS	50.0%
	ATAGGGCACAGGTTGTGGGA+TGG	+	chr2.1:3732682-3732701	MS.gene069852:intron	55.0%
	CCATCTTTCCCAGGAAGTCC+AGG	-	chr2.1:3733195-3733214	None:intergenic	55.0%
	CCTGGACTTCCTGGGAAAGA+TGG	+	chr2.1:3733192-3733211	MS.gene069852:CDS	55.0%
	GAGCTCAGACTAGGCTTACC+TGG	+	chr2.1:3731859-3731878	MS.gene069852:CDS	55.0%
	GTTTGCAGCTCCAAGAGCCA+TGG	+	chr2.1:3733891-3733910	MS.gene069852:intron	55.0%
	TCAGTTGCTACTGCTGCTGC+TGG	+	chr2.1:3731904-3731923	MS.gene069852:CDS	55.0%
!	CCGACTCGTGTAGGAGACTA+AGG	+	chr2.1:3733573-3733592	MS.gene069852:CDS	55.0%
	GTTGCTACTGCTGCTGCTGG+TGG	+	chr2.1:3731907-3731926	MS.gene069852:CDS	60.0%
!!	GGATGTTCGCCGACTCGTGT+AGG	+	chr2.1:3733564-3733583	MS.gene069852:intron	60.0%
	GGCTCCGAGGCAATTGGGCT+AGG	+	chr2.1:3733605-3733624	MS.gene069852:CDS	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr2.1	gene	3731820	3733936	3731820	ID=MS.gene069852
chr2.1	mRNA	3731820	3733936	3731820	ID=MS.gene069852.t1;Parent=MS.gene069852
chr2.1	exon	3731820	3732277	3731820	ID=MS.gene069852.t1.exon1;Parent=MS.gene069852.t1
chr2.1	CDS	3731820	3732277	3731820	ID=cds.MS.gene069852.t1;Parent=MS.gene069852.t1
chr2.1	exon	3732686	3732915	3732686	ID=MS.gene069852.t1.exon2;Parent=MS.gene069852.t1
chr2.1	CDS	3732686	3732915	3732686	ID=cds.MS.gene069852.t1;Parent=MS.gene069852.t1
chr2.1	exon	3733178	3733319	3733178	ID=MS.gene069852.t1.exon3;Parent=MS.gene069852.t1
chr2.1	CDS	3733178	3733319	3733178	ID=cds.MS.gene069852.t1;Parent=MS.gene069852.t1
chr2.1	exon	3733565	3733626	3733565	ID=MS.gene069852.t1.exon4;Parent=MS.gene069852.t1
chr2.1	CDS	3733565	3733626	3733565	ID=cds.MS.gene069852.t1;Parent=MS.gene069852.t1
chr2.1	exon	3733899	3733936	3733899	ID=MS.gene069852.t1.exon5;Parent=MS.gene069852.t1
chr2.1	CDS	3733899	3733936	3733899	ID=cds.MS.gene069852.t1;Parent=MS.gene069852.t1

Gene Sequence

>MS.gene069852

ATGGACAAAACATCTTCTTCTCTCAACTTCAAGGAAACTGAGCTCAGACTAGGCTTACCTGGTTGTGAATCTCCTGATAGAAAATCAGTTGCTACTGCTGCTGCTGGTGGAGTCTCTTTCTTTGCCAACAAGGATTTGAAGAACATTAATGTTTGTTCTTCTCCTTTGAAGAACCTTGTAGCTAGTGTTGGAGCTAAAAGAGGTTTCTCTGATGCCATTGATGAGTCTTCTGGGAAATGGAGTTTCTCTATGAATGATGGATCTGAAGGAGCTGGTTTGTTCTCTCCAAGAGGAGGGAATGTTGGAAAAACTCTTGTTGGTTTAGAGACTCAAACTAATATTCAGAAGATTAATACAAATGCAACAAAAAACATCAAAGAGGTTCTTCATCAATCTGTACATGAAAAGAATAAACAGGTTAATGGAACAAATGAGCATGCTAATGCTCCTGCTGCAAAGTATGTTTCTTTGCATCATTCTGCTTATTGTTTTTAGATTTTACAATTGCTTAGTTTCCTGTTCTGTTTACTTTTTTTTGAGTAATCTTTTGTTCATGTCATGTTTTGGTTACCTAGATTAGACAAAGGTGAAAGATATTGTAATTCATAAAACTAAACATGTTAGTTTTTTGTTTGTTTTTTTATGGGTTTATGTTCTGTGAATTCAACCCTTGAATAGACATGATTTTTTTCTCTCTTTGGAATGAGTTTTAAAAGTTAGATATATTTTCTTAAGCAAAAATCGAATTTTTCCATGTATAATTCAAAAATAGTGGTTAATGAATATTTGGGTTGTTTTCAGAAAAGGTTTCATCTTCAAATTTGTTAGACTTATGTGTTCCTCATTGTATCAAACTTCTGTAATAGGGCACAGGTTGTGGGATGGCCACCAATTCGATCGTTTCGAAAAAACACGATGGCATCTAATTTGTCAAAGAACAATGATGAAGCTGAGGGAAAACCAGGATTTGACTGTCTCTATGTAAAAGTCAGTATGGATGGTGCTCCTTATCTCAGAAAGGTTGATCTCAAGACCTACAACAACTATATGGAACTTTCTTCAGCTCTTGAGAAGATGTTCACCTGCTTTACCATTGGTACTAACTTTACCTTCTTCAAATTACTTACCTTAGCTCCTTATTTTGATTTTTTACACACCTTTTTTTACTTGCTGTAAAATTATTTACATGTGTTTTAGGAACAAGTTTCCTAGCTTGACTTTCTCATGTAAGTGTTAATTAAGTGTTTATCATATCTTATCTAGATCCTGTTTGGTTACACAGTTAATTAAGTGTTTATCATATACGCGTTTATGTATAACTATTTTGTGATCTAATATATTCGTATTCCTAAAATCAGGTCAATGCAATTCTCCTGGACTTCCTGGGAAAGATGGACTAAGTGAGAGCTCTTTGAGGGATCTTCTTCATGGATCTGAATATGTTCTTACATATGAAGATAAAGATGGAGATTGGATGCTTGTAGGTGATGTTCCTTGGGGGTAAGTTATTTCTTTTTATTCGCTGTTTGGATAAGCAGCTTAATTAAGCACTTATAGGATAAACACTTATCATTTAATCGCTCACGTATAAGTTATATCTTAATCCAAAGACAAAATAAGTCAACTTACAGACATGATATAAGTTTTTTCTATAAGCTCTCCCAAACACTTTCATATTGAAGCTTATGTTAAATCGTGATAGTCCAATGGTTGAATCGGCTTAACTAAATTGTTGGTTGATGCAGGATGTTCGCCGACTCGTGTAGGAGACTAAGGATCATGAAAGGCTCCGAGGCAATTGGGCTAGGTATGAAAGTTTACACTCTAGATTTGTTTAAGGAAGTTGTTAACAAATTATTGCATTAAAGTTTCAAGAGATGCTAAGATGATTTCAGCCAGACTTTTGTTGTTTATTTTAATTGTCATCTTAACATATGTCAAGATTTTATTTAGCTAAGTATTATGCCCGCACTACAATTATTAGATTGTAGATATCTTGTAATCTTTGATATGGATCACTGGTTTTATATTGGAGTCAAAGATTGCTGATAAATATGTTCTCAATTATCTTGTTTGCAGCTCCAAGAGCCATGGGAAAATCTAGGAGCCAAAACTAG

Protein sequence

>MS.gene069852.t1

MDKTSSSLNFKETELRLGLPGCESPDRKSVATAAAGGVSFFANKDLKNINVCSSPLKNLVASVGAKRGFSDAIDESSGKWSFSMNDGSEGAGLFSPRGGNVGKTLVGLETQTNIQKINTNATKNIKEVLHQSVHEKNKQVNGTNEHANAPAAKAQVVGWPPIRSFRKNTMASNLSKNNDEAEGKPGFDCLYVKVSMDGAPYLRKVDLKTYNNYMELSSALEKMFTCFTIGQCNSPGLPGKDGLSESSLRDLLHGSEYVLTYEDKDGDWMLVGDVPWGMFADSCRRLRIMKGSEAIGLAPRAMGKSRSQN