AlfalfaGEDB | MS.gene07038

M. sativa cultivar XinJiangDaYe / MS.gene07038

KEGG: K09517
GO: GO:0003674 GO:0005488 GO:0005515 GO:0006457 GO:0008150 GO:0009987 GO:0051082
PFAM: PF00226.34 PF01556.21

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07038.t1	XP_003625951.1	98.5	344	5	0	1	344	1	344	1.20E-171	612.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07038.t1	B9FHF3	80.1	337	63	1	11	343	10	346	7.2e-136	485.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07038.t1	G7KSR8	98.5	344	5	0	1	344	1	344	8.9e-172	612.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049178	MS.gene07038	0.812519	4.07E-51	-1.69E-46
MS.gene049264	MS.gene07038	0.817145	3.84E-52	-1.69E-46
MS.gene04984	MS.gene07038	0.812428	4.26E-51	-1.69E-46
MS.gene050001	MS.gene07038	0.800076	1.71E-48	-1.69E-46
MS.gene050114	MS.gene07038	0.813262	2.80E-51	-1.69E-46
MS.gene050439	MS.gene07038	0.810992	8.75E-51	-1.69E-46
MS.gene050719	MS.gene07038	0.804143	2.49E-49	-1.69E-46
MS.gene050721	MS.gene07038	0.800321	1.52E-48	-1.69E-46
MS.gene050780	MS.gene07038	0.822804	1.95E-53	-1.69E-46
MS.gene051120	MS.gene07038	0.84356	1.30E-58	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene07038	MS.gene35518	PPI
MS.gene07038	MS.gene034372	PPI
MS.gene07038	MS.gene059290	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07038.t1	MTR_7g109340	98.547	344	5	0	1	344	1	344	0.0	708
MS.gene07038.t1	MTR_8g006430	38.068	352	179	10	27	343	15	362	5.89e-56	188
MS.gene07038.t1	MTR_3g108020	34.557	327	200	7	27	344	5	326	1.37e-53	179
MS.gene07038.t1	MTR_4g078850	35.465	344	192	7	27	344	5	344	2.09e-53	179
MS.gene07038.t1	MTR_4g015840	37.026	343	181	8	27	343	5	338	2.41e-53	179
MS.gene07038.t1	MTR_2g014470	34.218	339	198	8	27	344	5	339	9.32e-50	169
MS.gene07038.t1	MTR_2g090705	34.503	342	189	9	27	344	5	335	5.95e-49	167
MS.gene07038.t1	MTR_4g050420	36.023	347	188	7	27	343	14	356	3.00e-43	154
MS.gene07038.t1	MTR_2g087660	34.181	354	187	9	27	343	14	358	3.96e-43	154
MS.gene07038.t1	MTR_1g087580	42.793	222	78	4	125	340	2	180	2.25e-42	146

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07038.t1	AT3G62600	77.810	347	73	2	1	344	1	346	0.0	551
MS.gene07038.t1	AT2G20560	34.795	342	190	7	27	344	5	337	6.05e-56	186
MS.gene07038.t1	AT3G08910	36.527	334	177	8	27	343	5	320	7.17e-56	185
MS.gene07038.t1	AT5G01390	34.604	341	187	8	27	343	5	333	1.24e-55	185
MS.gene07038.t1	AT5G25530	35.398	339	193	9	27	344	5	338	1.65e-53	179
MS.gene07038.t1	AT5G25530	34.582	347	193	10	27	344	5	346	9.19e-51	172
MS.gene07038.t1	AT5G22060	37.037	351	181	11	27	343	15	359	2.17e-49	171
MS.gene07038.t1	AT1G59725	32.222	360	167	8	27	344	5	329	1.23e-48	166
MS.gene07038.t1	AT1G10350	32.759	348	199	6	27	344	5	347	1.47e-48	167
MS.gene07038.t1	AT4G28480	33.125	320	178	6	27	344	5	290	1.82e-45	157

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Find 83 sgRNAs with CRISPR-Local

Find 389 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTTCATGAGGTGCGGTG+CGG	0.717597	7.2:-5496585	None:intergenic
AAATTTGCGGAGATTAGCAA+TGG	0.617908	7.2:+5492148	MS.gene07038:CDS
AACCCTTGAAGATTTGTATA+TGG	0.319394	7.2:+5493221	MS.gene07038:CDS
AAGCAAGTAAGGAAGTTCAA+AGG	0.564203	7.2:+5497075	MS.gene07038:CDS
AAGCAGCATGCCGCTGGTGG+AGG	0.488986	7.2:+5492633	MS.gene07038:CDS
AATAGCATAGAGCACAGAGA+AGG	0.608834	7.2:-5491893	None:intergenic
AATGTCAAATACATAAGGGA+GGG	0.618582	7.2:+5494333	MS.gene07038:CDS
AATGTTGTAAAGCCAGCTCC+TGG	0.471578	7.2:+5493911	MS.gene07038:CDS
AATGTTTCTTTCAGTTTCTT+TGG	0.228428	7.2:+5493129	MS.gene07038:intron
ACAGAGAAGGAACAACAATT+TGG	0.396887	7.2:-5491880	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGATGGAAAATGGATCAA+GGG	-	chr7.2:5496270-5496289	None:intergenic	30.0%
AACCCTTGAAGATTTGTATA+TGG	+	chr7.2:5493221-5493240	MS.gene07038:CDS	30.0%
AACTAAGAAGAACTGCTTTA+GGG	+	chr7.2:5493560-5493579	MS.gene07038:intron	30.0%
AATACAAAATCCCCCTAATT+TGG	+	chr7.2:5495457-5495476	MS.gene07038:intron	30.0%
AATATACTAGTAGATGGGTA+TGG	+	chr7.2:5493401-5493420	MS.gene07038:intron	30.0%
AATGTCAAATACATAAGGGA+GGG	+	chr7.2:5494333-5494352	MS.gene07038:CDS	30.0%
ACCCATATACAAATCTTCAA+GGG	-	chr7.2:5493226-5493245	None:intergenic	30.0%
ACCCTTGAAGATTTGTATAT+GGG	+	chr7.2:5493222-5493241	MS.gene07038:CDS	30.0%
ACTTATTCGAAATTATCGAG+TGG	-	chr7.2:5492487-5492506	None:intergenic	30.0%
AGGGACAAAAGAAATATGTT+AGG	-	chr7.2:5497037-5497056	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.2	gene	5491864	5497218	5491864	ID=MS.gene07038
chr7.2	mRNA	5491864	5497218	5491864	ID=MS.gene07038.t1;Parent=MS.gene07038
chr7.2	exon	5491864	5491934	5491864	ID=MS.gene07038.t1.exon1;Parent=MS.gene07038.t1
chr7.2	CDS	5491864	5491934	5491864	ID=cds.MS.gene07038.t1;Parent=MS.gene07038.t1
chr7.2	exon	5492021	5492169	5492021	ID=MS.gene07038.t1.exon2;Parent=MS.gene07038.t1
chr7.2	CDS	5492021	5492169	5492021	ID=cds.MS.gene07038.t1;Parent=MS.gene07038.t1
chr7.2	exon	5492568	5492694	5492568	ID=MS.gene07038.t1.exon3;Parent=MS.gene07038.t1
chr7.2	CDS	5492568	5492694	5492568	ID=cds.MS.gene07038.t1;Parent=MS.gene07038.t1
chr7.2	exon	5493143	5493257	5493143	ID=MS.gene07038.t1.exon4;Parent=MS.gene07038.t1
chr7.2	CDS	5493143	5493257	5493143	ID=cds.MS.gene07038.t1;Parent=MS.gene07038.t1
chr7.2	exon	5493896	5494012	5493896	ID=MS.gene07038.t1.exon5;Parent=MS.gene07038.t1
chr7.2	CDS	5493896	5494012	5493896	ID=cds.MS.gene07038.t1;Parent=MS.gene07038.t1
chr7.2	exon	5494315	5494401	5494315	ID=MS.gene07038.t1.exon6;Parent=MS.gene07038.t1
chr7.2	CDS	5494315	5494401	5494315	ID=cds.MS.gene07038.t1;Parent=MS.gene07038.t1
chr7.2	exon	5496424	5496483	5496424	ID=MS.gene07038.t1.exon7;Parent=MS.gene07038.t1
chr7.2	CDS	5496424	5496483	5496424	ID=cds.MS.gene07038.t1;Parent=MS.gene07038.t1
chr7.2	exon	5496577	5496654	5496577	ID=MS.gene07038.t1.exon8;Parent=MS.gene07038.t1
chr7.2	CDS	5496577	5496654	5496577	ID=cds.MS.gene07038.t1;Parent=MS.gene07038.t1
chr7.2	exon	5496890	5496961	5496890	ID=MS.gene07038.t1.exon9;Parent=MS.gene07038.t1
chr7.2	CDS	5496890	5496961	5496890	ID=cds.MS.gene07038.t1;Parent=MS.gene07038.t1
chr7.2	exon	5497060	5497218	5497060	ID=MS.gene07038.t1.exon10;Parent=MS.gene07038.t1
chr7.2	CDS	5497060	5497218	5497060	ID=cds.MS.gene07038.t1;Parent=MS.gene07038.t1

Gene Sequence

>MS.gene07038

ATGGCGCATCAAAGAGCCAAATTGTTGTTCCTTCTCTGTGCTCTATGCTATTCTCTCAGCGCCATTGCCGTGTAATTTTTCTGTTTTCCTTTTATTACCGTTTCTCGAAAATGTTGTTGATTCTACATTTGCTTATAAATCTATGTTTGGTATGCAGAAAGAGTTATTACGATATACTTCAAGTGTCGAAAGGTGCATCGGATGATCAGATTAAGAGAGCGTATAGAAAGCTTGCATTGAAGTATCATCCTGATAAGAATCCGGGAAATGAAGAAGCTAATAAGAAATTTGCGGAGATTAGCAATGGTACATAAATATACATGTATCTTTGCTATTCTTTTTAATGATTTAGTTTGTGTGTTGTTATTTGCTATTAATGCTTTGTTTCAATAAACAACTTAATTACGCGATTATGACGTCAGTGCCTATCATATAAGTGTTTATGTATACATTATTTCTTTAACAAAATACAAAAATAAAGTGAAAATGTTTACTTATAAGGCATACAATATTTTTATAAGCTATATTAGGGGGGTTATGGAATTAAGTTGAAAACAGCTTATGGACACGTCATAAGTTGTTTCCATAAGCTCTTTCAAGCAGTCTCACAAATGTTTATGCCACTCGATAATTTCGAATAAGTCAATACAAACAGTCCCTTATTTTGGTTATTAATGGTTGCTTTTTATTGTTGCTGCTGTCAGCATATGAGGTATTGTCGGATAACGAGAAGAGAAATATTTATGATAAGTATGGTGAAGAGGGTTTGAAGCAGCATGCCGCTGGTGGAGGAAGAGGTGGTGGAATGAACATGCAGGATATTTTTAACTCGTAAGTCATCACCTTAGCCTTTGCTTGATTAGTTCTTAACCTATAAGTTAACACTATCACATTTCAGATATGTATTATCGGCTAATTACTTTATTTTTACTTGCATTGGTATAATGTATGTTGCAACAAAGAATCAAATAATATATGTTTATGGCTAAGAAAAGCAGTTATAGAAGGCTATTAGGGTTTTATATTATCACACTAACTGTAATCGGAACCTTCATATGGTTTTATTGATTCATTTGATTTCCTCATGTCTGCATCAATTTTTATGACGCCACAAATTTTAATATAGTCATTTATTTGCGATCAAAGATTATGTTGTCATGTGTAAGTGGACTGCTATGTTCTTGATGTGTATGGGGCTCTGGACTTGTATGCTAATTTTTAGTATGGGGCTCTGGACTTGCTTTTATGGATGACACCGAAATATGAATGTTTCTTTCAGTTTCTTTGGCGGGGGATCAATGGAGGAAGAAGAAGAGAAAATTGCGAAAGGCGACGACGTTATTGTTGATTTGGATGCAACCCTTGAAGATTTGTATATGGGTGGTTCCTTGAAGGTGCGGTCACATTTAATCTAGCTACTGTTTTGAGCTCAAGCATTAAATCTATGTATTTAATTATTTACCAATGGGCAACATATACGTGTCACATTGTCATGCTATTTTTAAATTCTGCAACATTTTATTTTTATAATTTGAATAATATACTAGTAGATGGGTATGGGATAGATTCGAGACTATCATACTGGTTTTCACGTGACACGCGGCAACAGAAAAACACATTTTCATTAAGCTACATCAGCCAATAGAAAATCATAAATAAAACTAAAGCAACTAAAAATCATAAATAAAACTAAAGCAACTAAGAAGAACTGCTTTAGGGGATGAGATGCAGAACTTACATCAAGCTGACATCATGTATTCCCAAAGGCTATTCTTTATTTCCCTTTTGATAAATCTCAGATATTTTAGTTTGTTCTTTGTATTATACAGTTAAGTATTTTCATTGAGAAAATCAGGAGACACTGTAGCCACTATTCATGTATTATCATGGTGTAGTTGTAAACTAAGTGGTTATGAACTTGTCAAGAATTCTGAATCATCAATAACTCTGTCACGCTGTAGTGACCCAAAGTGTAGAATTCGCAAGTCATTTGTTGATTGCTTCTTTGTGATTATTGTATTGTAATTATCAGGTTTGGAGGGAGAAAAATGTTGTAAAGCCAGCTCCTGGAAAAAGACGCTGTAACTGTAGAAATGAGGTTTATCACAGGCAAATCGGGCCTGGAATGTTTCAACAAATGACAGAGCAGGTAAATATCATCTTCGAGGATGCTGATAGTACAAATGTTCCTGTTTATTCTTGTCCATTTTTTAGGATGTATATTTTGCCCTGCAAATACACTGGCTTCTAGTGTCAATGTTTCATGACATTTCATTGTATGATTGTGGAAACCAGAAATGTTTAATTTATATATATTCATACTCAAGTTTCTTTTTCCTTGTCTTTTTTCCTTATGTGCTTGAGGGGACTGGGGTGTGAAGGTTTATTTTTAATTTTGTTCTGAATATTTGCAAAAATTTATGCTACTATGTGTGATATCTACCTGTTCAGGTCTGTGATCAATGTGCTAATGTCAAATACATAAGGGAGGGATATTTCGTCACTGTTGATATTGAGAAAGGCATGAAAGATGGCCAGGTAAACTTTTAAAGTTTGTATGTAGGTTTTAGTGCTTTATGTAAGTATGCATAATGTCATGTCTCACTATCCATTTTCTTATAAGCCCTACACTTATAAGCATGTCTAATCACATCGACATCTAAGCTCTAAATACTGTAGCTCTGTTTGATAATTCTATTTGTAATTATGTTAGAACTGTAATTGATTTTAATTTCAATCTAGTCTGAGTAGCACACAATAATTTGTAAATTTTCTATTTTATTTCAATTCAATTTATGACAAGTTCTTGCATTTCATTACAACAAATACTCACTTGTACATTTAATTTAATTTTTGACATTGACAAGACAAAAAAAGCCCAACAATTATAATATTTATTTACCCTGATAGGGACTTGGCTATTACTGGATGCATTAGTTCACATAGTATAGTATGCGATGCTCTAATTAGCTTGGTCCCTCCCCTTTGATAGCTAGCTTTTAAGGGAGCTTTCCCAACTCCCAAGTGCTTGAGTGCTTATGAAATGGTACCTGGGCAGGTTTCCAGTGTCTTAGAAAAACTATATATGGAAGAGACACCAGAAAGGCTGAGTCGAGCGTTGTAGAGTCCATCCATTGAGTCGTTTGGCTCTTAAGAGAATTGCTATGATAGGGACTTGCATATTAGGGCAATCCGGGAAGGGGTCCCACCATTTGGTTTATTGTACGCAGCCTTGCCCTGTTTTTACACAAGAGGCTGTTTCCAGGACTTGAACCCTGTTTCCAGGACTTGCATATTATGGAGTGTTTTTTTGTTTTGAATGGAGTATTATGGAGTGCTTAAATCACACATCAAGTAGTATGAGATGCTTGTTTTAGTCCTTAAGTGGCTTGGTTTTTCCCATGGCAGCTAGTTTTACTGGAGGGTTCCCACATGCTTGGGGTGCTGAATTGCCCAAATGACCATATGCATAGCTCAGTGGTTCTTACTACTTTAGGGTCTGTTTGGGGGTTTAGGATGGGAGGGGAGGACGTTAAGCGGAAGGAATGGAGGGTTTTAGGAGGAAGGGCTTTGGGGTGTTTATTTCTCTTCATAATACAAAATCCCCCTAATTTGGGGAAACTCAAAATCTATTAGAAGAGAATTTTGAAGGGCTTAGATAAATTCTTCAAATCCTTTTCATGTTGTTGTAATACTTTAAAAATTGAAAATTTATTAATCGTTAGTCTTTTCTTACATCTTACAATTACAACTCCAATCCCCCAAAGCCCTCCCCTTCCCTCCAAATTCCCAAATAGAGCCTTTAGCTTGAGCCAAAAAATTCAAGTTATTTTGGCTCTCTGACTACATAAGCTCATCTTATTCATATTGAATTTTGACCTTTTATTGATATTATTAAATTTTCTCAGCTGATCAGTGGATACATTTAATTGCCATTTTTTTTTTTTGACCAAAACAAACTTAATTTATATCATTAATTAAACAATGTTCAATACAAGAAGGATAAACATAAAAAATACGGTGACTAGCCCAAGAACATGAGCAACTGTGTTCCCTTGTCGCCTAATAAACTTCACCTAAGATTTAGATTTAAATGACCTATCATTTGACATGATTCACAATAAAACATTGTGACATCGTTTGATGCTTGCAGCTAACTCTATCAAATGGGAAAGGCATTTATTCTCATTGTTGTAAGACTTGACGACCTAGCTTCAATTTTAAGGGTGTACCTGTTTAAGCTGAAAATTAGTTTATGCAAATATTAGATGGTGGGAAATAGATCCTTGTTTTTTTTTTTTTAAAGGAAATAGATCCTTGTTTGACATCAGTTCCGACTACCAAGTAATATAGAGGAGTGAAAACCAAAAGCTTTGAATATGCCACACTGCTTTCTTTCTTTACCCTTGATCCATTTTCCATCTTTCTCACCAACCATTCTCAAAGTGTTATTTTGCAATTGAATGTAAAGTACGAATCTTAATTTATGAAAGCTTTAATGTTTTCCAAGTCGAAACTTGACTAATTGAATGTTTATGGCAATTTTTTGTCCTTTCACAGGAGGTGCTATTTTATGAGGACGGCGAGCCCATAATTGATGGAGAATCTGGAGATTTAAGGGTTCGTAGATGCCTTTCATTTTTGTTAGCAAATGCTTAATATGCATGTTATTTATGTGCAGTTTGCTGACAATCCATATGCTAATATGAACAGTTTCGTATCCGCACCGCACCTCATGAACTTTTCAAAAGGGAAGGCAATGACTTACACACGACTGTCACTATCACGCTGGTAAGTATAATCATGGTATTATTTTAGTTGTACCTTACCTTTCGGATTTTGGATAACACTGCAAGTAGTAACTACTATTACTAACCACTGTTGTAGTAAGTATTAAACAGTAACTAGCATGGACGAGTTGGAATATGACACTTGTTGATTGTGCAAACGGTTAACTGTTCTCTGATATATTTGCATCTTAAAAATTCTAAGCAGTGTAAAGTTTATTAACCTTGATCTCCTTTAGGTTCAAGCTCTTGTTGGTTTTGAGAAGACCGTTAAACACCTTGATGAACATTTGGTAGACATAAGCTCGAAGGTGAGCATGAAATATCTTCTTTGCTGCTCTTAATTGGTGTTGATTCTCCCACCCCAAAATCATTGAAACACACCTAACATATTTCTTTTGTCCCTCAGGGAATCACAAATCCAAAGCAAGTAAGGAAGTTCAAAGGGGAGGGTATGCCATTGCATATGAGCACAAAGAAAGGAGATCTTTACGTCACTTTTGAGGTTCTGTTCCCCACCTCACTATCGGAGGAACAGAAAACAAAAATAAAATCAATTCTTGGTTAG

Protein sequence

>MS.gene07038.t1

MAHQRAKLLFLLCALCYSLSAIAVKSYYDILQVSKGASDDQIKRAYRKLALKYHPDKNPGNEEANKKFAEISNAYEVLSDNEKRNIYDKYGEEGLKQHAAGGGRGGGMNMQDIFNSFFGGGSMEEEEEKIAKGDDVIVDLDATLEDLYMGGSLKVWREKNVVKPAPGKRRCNCRNEVYHRQIGPGMFQQMTEQVCDQCANVKYIREGYFVTVDIEKGMKDGQEVLFYEDGEPIIDGESGDLRFRIRTAPHELFKREGNDLHTTVTITLVQALVGFEKTVKHLDEHLVDISSKGITNPKQVRKFKGEGMPLHMSTKKGDLYVTFEVLFPTSLSEEQKTKIKSILG