AlfalfaGEDB | MS.gene070901

M. sativa cultivar XinJiangDaYe / MS.gene070901

KEGG: -
GO: GO:0003674 GO:0003824 GO:0016740 GO:0016757 GO:0016758
PFAM: PF00201.21

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene070901.t1	XP_003613028.1	88.4	146	17	0	1	146	329	474	3.70E-69	270.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene070901.t1	U5NH37	66.4	134	44	1	10	143	347	479	5.3e-48	191.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene070901.t1	G7JWC5	88.4	146	17	0	1	146	329	474	2.7e-69	270.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049297	MS.gene070901	0.83395	3.97E-56	-1.69E-46
MS.gene049669	MS.gene070901	0.804498	2.10E-49	-1.69E-46
MS.gene049825	MS.gene070901	0.805392	1.36E-49	-1.69E-46
MS.gene049873	MS.gene070901	0.813843	2.08E-51	-1.69E-46
MS.gene050201	MS.gene070901	0.807355	5.26E-50	-1.69E-46
MS.gene050228	MS.gene070901	0.807176	5.75E-50	-1.69E-46
MS.gene050303	MS.gene070901	0.80437	2.23E-49	-1.69E-46
MS.gene050330	MS.gene070901	-0.814442	1.54E-51	-1.69E-46
MS.gene050558	MS.gene070901	0.809046	2.30E-50	-1.69E-46
MS.gene050820	MS.gene070901	0.803814	2.91E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene070901.t1	MTR_5g031860	88.356	146	17	0	1	146	329	474	2.06e-93	278
MS.gene070901.t1	MTR_5g031840	86.301	146	20	0	1	146	321	466	3.88e-91	272
MS.gene070901.t1	MTR_5g031830	85.616	146	21	0	1	146	330	475	1.11e-90	271
MS.gene070901.t1	MTR_5g464810	51.493	134	60	4	8	139	345	475	3.16e-38	135
MS.gene070901.t1	MTR_5g064240	51.493	134	60	4	8	139	345	475	3.16e-38	135
MS.gene070901.t1	MTR_6g014300	46.721	122	64	1	19	139	342	463	1.55e-37	133
MS.gene070901.t1	MTR_0036s0220	50.000	134	62	4	8	139	345	475	4.99e-37	132
MS.gene070901.t1	MTR_6g014150	45.600	125	67	1	18	141	352	476	1.45e-36	130
MS.gene070901.t1	MTR_6g014270	45.600	125	67	1	18	141	354	478	1.60e-36	130
MS.gene070901.t1	MTR_0477s0010	42.308	130	74	1	13	141	187	316	3.16e-36	127

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene070901.t1	AT5G05900	51.200	125	60	1	18	141	323	447	1.77e-39	138
MS.gene070901.t1	AT5G05880	49.606	127	63	1	18	143	324	450	5.85e-38	134
MS.gene070901.t1	AT5G05890	48.819	127	64	1	18	143	328	454	2.15e-37	132
MS.gene070901.t1	AT3G11340	43.357	143	75	2	2	143	309	446	8.72e-37	130
MS.gene070901.t1	AT3G46660	44.882	127	69	1	18	143	331	457	1.46e-35	127
MS.gene070901.t1	AT1G78270	47.101	138	64	4	16	144	352	489	1.09e-33	123
MS.gene070901.t1	AT1G22400	45.600	125	66	2	16	138	354	478	1.36e-33	123
MS.gene070901.t1	AT3G46670	44.444	126	69	1	19	143	325	450	1.69e-33	122
MS.gene070901.t1	AT1G22380	43.750	128	70	2	16	141	353	480	1.74e-33	122
MS.gene070901.t1	AT5G05870	48.387	124	63	1	19	141	331	454	7.04e-33	120

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Find 38 sgRNAs with CRISPR-Local

Find 45 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTTGATTCAGTATATA+AGG	0.317414	5.4:+21707210	MS.gene070901:CDS
AAAGAGAAAGGGATGATTGT+GGG	0.472351	5.4:+21706855	MS.gene070901:CDS
AAATAAGGCCAACATATCAT+AGG	0.459700	5.4:-21706978	None:intergenic
AAGAGAAAGGGATGATTGTG+GGG	0.603887	5.4:+21706856	MS.gene070901:CDS
AAGATCTGCTATTGAAATGG+CGG	0.566824	5.4:+21707136	MS.gene070901:CDS
AAGGGACTACTAAAGAGAAA+GGG	0.595105	5.4:+21706844	MS.gene070901:CDS
ACCATTAGGACTTACACTCT+TGG	0.484150	5.4:-21707168	None:intergenic
ACTTTGGAGAGTGTGATTTG+TGG	0.454735	5.4:+21706951	MS.gene070901:CDS
AGAAAGGGATGATTGTGGGG+TGG	0.586735	5.4:+21706859	MS.gene070901:CDS
AGGACTATTGAAGGAGCTTG+AGG	0.572112	5.4:+21706821	MS.gene070901:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATAAGGCCAACATATCAT+AGG	-	chr5.4:21706981-21707000	None:intergenic	30.0%
ACAAGAAAAAGGACTATTGA+AGG	+	chr5.4:21706812-21706831	MS.gene070901:CDS	30.0%
ATATGAAGGATGTTTGTGAT+AGG	+	chr5.4:21707057-21707076	MS.gene070901:CDS	30.0%
TAGGAATGTTGTTGAGAAAA+TGG	+	chr5.4:21707076-21707095	MS.gene070901:CDS	30.0%
TGATATTATGACGAACAAGA+AGG	+	chr5.4:21707103-21707122	MS.gene070901:CDS	30.0%
TTCAAGATCTGCTATTGAAA+TGG	+	chr5.4:21707133-21707152	MS.gene070901:CDS	30.0%
AAAGAGAAAGGGATGATTGT+GGG	+	chr5.4:21706855-21706874	MS.gene070901:CDS	35.0%
AAGATCTGCTATTGAAATGG+CGG	+	chr5.4:21707136-21707155	MS.gene070901:CDS	35.0%
AAGGGACTACTAAAGAGAAA+GGG	+	chr5.4:21706844-21706863	MS.gene070901:CDS	35.0%
TAAAGAGAAAGGGATGATTG+TGG	+	chr5.4:21706854-21706873	MS.gene070901:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.4	gene	21706807	21707247	21706807	ID=MS.gene070901
chr5.4	mRNA	21706807	21707247	21706807	ID=MS.gene070901.t1;Parent=MS.gene070901
chr5.4	exon	21706807	21707247	21706807	ID=MS.gene070901.t1.exon1;Parent=MS.gene070901.t1
chr5.4	CDS	21706807	21707247	21706807	ID=cds.MS.gene070901.t1;Parent=MS.gene070901.t1

Gene Sequence

>MS.gene070901

ATGGTACAAGAAAAAGGACTATTGAAGGAGCTTGAGGAAGGGACTACTAAAGAGAAAGGGATGATTGTGGGGTGGGTTCCACAAGAGGAAGTTTTGTCACACAAAGCAATTGGTGCCTTTTTGACACATAGTGGGTGGAACTCTACTTTGGAGAGTGTGATTTGTGGAGTGCCTATGATATGTTGGCCTTATTTTGCTGATCAACAAATTAATAGTAGGTTTGTGAGTGAGGTTTGGAGAATTGGGTTGGATATGAAGGATGTTTGTGATAGGAATGTTGTTGAGAAAATGGTGAATGATATTATGACGAACAAGAAGGAGGAGTTTTCAAGATCTGCTATTGAAATGGCGGATTTGGCTTCCAAGAGTGTAAGTCCTAATGGTTCCTCCTACAACAACCTCCAAAATTTGATTCAGTATATAAGGTCTACTAGCCCATAA

Protein sequence

>MS.gene070901.t1

MVQEKGLLKELEEGTTKEKGMIVGWVPQEEVLSHKAIGAFLTHSGWNSTLESVICGVPMICWPYFADQQINSRFVSEVWRIGLDMKDVCDRNVVEKMVNDIMTNKKEEFSRSAIEMADLASKSVSPNGSSYNNLQNLIQYIRSTSP