AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene072269

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene072269.t1 MTR_8g013680 97.177 248 7 0 1 248 1 248 1.15e-170 470
MS.gene072269.t1 MTR_2g101370 84.553 246 38 0 3 248 4 249 3.39e-147 411
MS.gene072269.t1 MTR_5g012810 77.419 248 55 1 1 248 1 247 2.17e-121 345
MS.gene072269.t1 MTR_4g063090 62.832 226 81 1 24 246 26 251 1.45e-93 275
MS.gene072269.t1 MTR_1g006490 57.661 248 99 3 1 247 1 243 3.22e-91 269
MS.gene072269.t1 MTR_1g115405 57.490 247 103 2 4 248 6 252 7.01e-90 266
MS.gene072269.t1 MTR_1g006590 55.645 248 104 3 1 247 1 243 1.70e-86 257
MS.gene072269.t1 MTR_7g103030 60.643 249 96 2 1 248 3 250 1.98e-85 254
MS.gene072269.t1 MTR_7g023350 60.684 234 90 2 17 248 19 252 3.81e-85 254
MS.gene072269.t1 MTR_1g077540 50.000 250 118 1 5 247 7 256 4.77e-83 249
MS.gene072269.t1 MTR_6g069040 53.441 247 111 1 5 247 7 253 2.51e-78 237
MS.gene072269.t1 MTR_2g060360 45.041 242 132 1 1 242 1 241 1.89e-73 224
MS.gene072269.t1 MTR_2g094270 38.431 255 121 8 9 238 30 273 2.78e-39 137
MS.gene072269.t1 MTR_7g101190 40.167 239 126 6 19 242 39 275 3.48e-39 137
MS.gene072269.t1 MTR_3g118010 41.026 234 117 7 19 238 37 263 2.66e-38 135
MS.gene072269.t1 MTR_4g059390 39.076 238 122 7 19 238 39 271 3.06e-35 127
MS.gene072269.t1 MTR_5g063930 36.910 233 133 6 9 238 27 248 4.76e-35 126
MS.gene072269.t1 MTR_5g010150 37.131 237 133 6 14 238 47 279 3.48e-33 122
MS.gene072269.t1 MTR_5g082070 37.229 231 130 5 14 232 50 277 1.15e-31 118
MS.gene072269.t1 MTR_8g098375 35.443 237 137 6 14 238 47 279 4.12e-31 116
MS.gene072269.t1 MTR_2g094270 37.946 224 107 6 9 210 30 243 4.70e-31 115
MS.gene072269.t1 MTR_3g070210 36.287 237 135 7 14 238 50 282 1.08e-30 115
MS.gene072269.t1 MTR_2g017590 33.624 229 143 5 18 246 35 254 2.66e-29 111
MS.gene072269.t1 MTR_4g415300 35.714 238 134 7 14 238 51 282 5.30e-29 111
MS.gene072269.t1 MTR_2g017620 34.498 229 139 5 10 238 17 234 7.18e-29 110
MS.gene072269.t1 MTR_2g017620 34.498 229 139 5 10 238 31 248 9.18e-29 110
MS.gene072269.t1 MTR_4g006730 36.715 207 113 5 23 224 79 272 2.94e-28 109
MS.gene072269.t1 MTR_1g097840 35.398 226 126 6 23 242 78 289 4.20e-28 108
MS.gene072269.t1 MTR_3g008920 36.864 236 125 8 18 246 25 243 4.30e-28 108
MS.gene072269.t1 MTR_2g017660 33.333 231 145 4 18 248 38 259 1.77e-27 106
MS.gene072269.t1 MTR_2g104940 36.715 207 113 4 23 224 84 277 1.99e-27 107
MS.gene072269.t1 MTR_8g087710 33.051 236 146 5 14 246 31 257 4.54e-27 105
MS.gene072269.t1 MTR_1g095070 38.144 194 85 6 67 238 25 205 6.10e-27 103
MS.gene072269.t1 MTR_5g079570 36.087 230 129 8 18 243 39 254 1.78e-26 103
MS.gene072269.t1 MTR_2g017610 31.878 229 147 5 18 246 37 256 2.23e-26 103
MS.gene072269.t1 MTR_8g087720 32.353 238 150 4 7 241 23 252 4.70e-26 102
MS.gene072269.t1 MTR_2g017570 31.441 229 148 5 18 246 37 256 8.20e-26 102
MS.gene072269.t1 MTR_4g006730 35.859 198 109 5 32 224 1 185 8.64e-26 100
MS.gene072269.t1 MTR_4g006630 35.859 198 109 5 32 224 1 185 8.73e-26 100
MS.gene072269.t1 MTR_7g010650 34.956 226 132 6 19 241 37 250 2.74e-25 100
MS.gene072269.t1 MTR_4g084880 32.314 229 148 3 18 246 34 255 4.57e-25 100
MS.gene072269.t1 MTR_1g070385 33.778 225 131 7 22 241 65 276 5.77e-25 103
MS.gene072269.t1 MTR_2g017620 38.926 149 89 1 76 224 9 155 7.74e-23 92.4
MS.gene072269.t1 MTR_3g070210 35.468 203 119 5 14 207 50 249 1.15e-22 94.0
MS.gene072269.t1 MTR_1g095070 38.690 168 71 5 67 215 25 179 1.56e-20 86.3
MS.gene072269.t1 MTR_4g059390 37.647 170 91 4 19 177 39 204 1.65e-20 86.7
MS.gene072269.t1 MTR_5g010150 34.911 169 102 3 14 177 47 212 2.70e-18 80.9
MS.gene072269.t1 MTR_8g098375 33.140 172 107 3 14 180 47 215 1.10e-17 79.7
MS.gene072269.t1 MTR_4g415300 33.696 184 109 5 14 191 51 227 5.92e-16 74.7
MS.gene072269.t1 MTR_3g070210 33.333 168 104 4 14 176 50 214 6.54e-16 74.3
MS.gene072269.t1 MTR_4g006730 35.465 172 93 5 23 189 79 237 7.21e-15 72.4
MS.gene072269.t1 MTR_8g468730 35.922 103 47 2 141 243 5 88 1.40e-13 65.5
MS.gene072269.t1 MTR_4g075570 28.516 256 146 8 7 235 33 278 1.11e-11 63.9
MS.gene072269.t1 MTR_1g097840 32.948 173 96 6 23 189 78 236 1.17e-11 63.5
MS.gene072269.t1 MTR_8g087720 30.108 186 120 3 7 189 23 201 9.04e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene072269.t1 AT3G16240 81.200 250 45 2 1 248 1 250 3.28e-142 399
MS.gene072269.t1 AT5G47450 71.901 242 68 0 1 242 1 242 1.27e-121 346
MS.gene072269.t1 AT4G17340 74.897 243 60 1 1 243 1 242 9.17e-115 329
MS.gene072269.t1 AT2G36830 63.008 246 90 1 4 248 6 251 3.49e-102 297
MS.gene072269.t1 AT3G26520 62.295 244 90 2 7 248 10 253 5.91e-99 289
MS.gene072269.t1 AT4G01470 58.704 247 100 2 4 248 6 252 4.83e-92 271
MS.gene072269.t1 AT2G25810 55.061 247 107 2 1 247 1 243 3.68e-82 246
MS.gene072269.t1 AT1G73190 53.125 256 106 2 6 247 11 266 2.20e-80 243
MS.gene072269.t1 AT1G17810 51.765 255 110 2 6 247 11 265 1.69e-75 230
MS.gene072269.t1 AT3G47440 45.726 234 126 1 8 241 12 244 2.39e-68 211
MS.gene072269.t1 AT4G35100 40.586 239 121 7 14 238 33 264 1.69e-39 138
MS.gene072269.t1 AT4G35100 40.586 239 121 7 14 238 33 264 1.69e-39 138
MS.gene072269.t1 AT2G37170 38.340 253 138 8 10 246 28 278 6.81e-37 131
MS.gene072269.t1 AT2G37170 38.340 253 138 8 10 246 71 321 9.43e-37 132
MS.gene072269.t1 AT3G54820 39.407 236 124 8 19 238 38 270 6.41e-36 129
MS.gene072269.t1 AT5G60660 38.723 235 127 7 19 238 39 271 7.34e-36 129
MS.gene072269.t1 AT3G53420 38.934 244 131 7 19 246 39 280 2.69e-35 127
MS.gene072269.t1 AT3G53420 38.934 244 131 7 19 246 39 280 2.69e-35 127
MS.gene072269.t1 AT2G37180 38.618 246 129 8 19 246 37 278 6.46e-35 126
MS.gene072269.t1 AT2G16850 40.084 237 115 9 19 238 36 262 8.88e-35 125
MS.gene072269.t1 AT2G39010 39.241 237 123 7 19 238 38 270 1.29e-34 125
MS.gene072269.t1 AT4G00430 37.238 239 129 7 14 238 48 279 6.70e-32 118
MS.gene072269.t1 AT1G52180 69.880 83 25 0 129 211 39 121 2.16e-31 112
MS.gene072269.t1 AT1G01620 37.083 240 128 7 14 238 47 278 3.50e-31 117
MS.gene072269.t1 AT4G23400 37.288 236 133 7 14 238 48 279 7.30e-31 115
MS.gene072269.t1 AT3G61430 36.752 234 126 6 14 232 47 273 3.88e-30 114
MS.gene072269.t1 AT3G61430 36.752 234 126 6 14 232 47 273 3.88e-30 114
MS.gene072269.t1 AT2G45960 36.325 234 127 6 14 232 47 273 3.00e-29 111
MS.gene072269.t1 AT1G01620 38.693 199 101 6 55 238 14 206 3.67e-27 104
MS.gene072269.t1 AT4G10380 34.426 244 136 7 3 235 56 286 6.50e-27 105
MS.gene072269.t1 AT1G80760 34.978 223 127 5 23 240 84 293 8.23e-27 105
MS.gene072269.t1 AT4G19030 33.333 243 144 7 12 246 48 280 1.32e-26 105
MS.gene072269.t1 AT5G37820 32.900 231 140 4 19 246 43 261 4.85e-26 103
MS.gene072269.t1 AT1G31885 33.333 240 136 6 18 246 42 268 7.21e-26 103
MS.gene072269.t1 AT5G37820 32.900 231 140 4 19 246 79 297 7.27e-26 103
MS.gene072269.t1 AT5G37810 32.468 231 141 4 19 246 43 261 2.90e-25 101
MS.gene072269.t1 AT4G18910 33.745 243 143 7 12 246 45 277 4.95e-25 100
MS.gene072269.t1 AT3G06100 31.064 235 155 4 6 240 33 260 3.79e-24 97.8
MS.gene072269.t1 AT3G06100 32.420 219 141 4 22 240 1 212 3.17e-23 94.4
MS.gene072269.t1 AT1G31885 33.480 227 127 6 31 246 1 214 6.85e-23 94.4
MS.gene072269.t1 AT2G45960 35.981 214 117 6 14 215 47 252 9.21e-22 91.7
MS.gene072269.t1 AT2G45960 36.408 206 112 5 14 207 47 245 1.13e-21 91.7
MS.gene072269.t1 AT2G39010 37.500 168 92 4 19 176 38 202 7.21e-19 82.8
MS.gene072269.t1 AT3G06100 34.058 138 89 2 103 240 44 179 3.34e-16 74.7
MS.gene072269.t1 AT4G00430 34.286 175 102 4 14 181 48 216 3.98e-16 75.1
MS.gene072269.t1 AT2G34390 31.532 222 137 6 18 232 47 260 7.69e-15 72.8
MS.gene072269.t1 AT2G34390 32.110 218 133 6 22 232 9 218 1.49e-14 71.2
MS.gene072269.t1 AT4G19030 31.351 185 111 6 12 188 48 224 4.97e-12 63.9

Find 78 sgRNAs with CRISPR-Local

Find 102 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTGGATTGCTCAGCTTCT+TGG 0.181745 8.3:+75076801 MS.gene072269:CDS
GCAGTTGGTGCAAACATTTC+TGG 0.199557 8.3:+75076705 MS.gene072269:CDS
GTGCCTATTGCCCCTTTCTT+TGG 0.207140 8.3:-75077072 None:intergenic
ATGAACCCGGCAAGATCTTT+TGG 0.247257 8.3:+75077168 MS.gene072269:CDS
CTTATCGGTGGTGGTTTGGC+TGG 0.262849 8.3:+75077246 MS.gene072269:CDS
TCCACGACAACTGGATCTAT+TGG 0.277829 8.3:+75077214 MS.gene072269:CDS
GTCAACCCTGCTGTCACCTT+TGG 0.291721 8.3:+75076735 MS.gene072269:CDS
GGTTTGGCTGGGCTTATCTA+TGG 0.292902 8.3:+75077258 MS.gene072269:CDS
TATTGGGCTGGGCCTCTTAT+CGG 0.322796 8.3:+75077231 MS.gene072269:CDS
GTCACCTTTGGATTGGCTCT+TGG 0.343040 8.3:+75076747 MS.gene072269:CDS
TTCATTGACCCGCCGGAGAA+TGG 0.346434 8.3:-75077150 None:intergenic
GCCTCTTATCGGTGGTGGTT+TGG 0.373518 8.3:+75077242 MS.gene072269:CDS
ATTGCCATTGGTTTCATTGT+TGG 0.375835 8.3:+75077105 MS.gene072269:CDS
GCCAAACCACCACCGATAAG+AGG 0.379268 8.3:-75077243 None:intergenic
ACTGAAATAATCATAACATT+TGG 0.380784 8.3:+75077015 MS.gene072269:CDS
GTGGAAATTTCCACGACAAC+TGG 0.386505 8.3:+75077205 MS.gene072269:CDS
TGAGATGAACTCAGCAATAT+AGG 0.386935 8.3:-75076071 None:intergenic
TTTGGGCCTGCAGTTGTTAG+TGG 0.387568 8.3:+75077186 MS.gene072269:CDS
AATAATCATAACATTTGGTT+TGG 0.391631 8.3:+75077020 MS.gene072269:CDS
CCACGACAACTGGATCTATT+GGG 0.398062 8.3:+75077215 MS.gene072269:CDS
AAGATGGCTGGCATAGCATT+TGG 0.399858 8.3:+75076010 None:intergenic
CCAAGCCTCCAGTGACAAAC+TGG 0.399981 8.3:-75076848 None:intergenic
TTTCTTCTCCAGTTTGTCAC+TGG 0.408023 8.3:+75076840 MS.gene072269:CDS
CCCTGCTGTCACCTTTGGAT+TGG 0.409091 8.3:+75076740 MS.gene072269:CDS
ACCTTTGGATTGGCTCTTGG+TGG 0.411041 8.3:+75076750 MS.gene072269:CDS
GATCCAAAGAAAGGGGCAAT+AGG 0.421974 8.3:+75077069 MS.gene072269:CDS
CCAGTTTGTCACTGGAGGCT+TGG 0.423778 8.3:+75076848 MS.gene072269:CDS
TCATTGACCCGCCGGAGAAT+GGG 0.436160 8.3:-75077149 None:intergenic
CATTGTTGGTGCCAACATAT+TGG 0.446875 8.3:+75077119 MS.gene072269:CDS
TTATCGGTGGTGGTTTGGCT+GGG 0.451028 8.3:+75077247 MS.gene072269:CDS
GCCAATCCAAAGGTGACAGC+AGG 0.452295 8.3:-75076741 None:intergenic
GCAGGCCCAAAAGATCTTGC+CGG 0.452714 8.3:-75077174 None:intergenic
GCAGCTGAAGTAGGACCAAT+TGG 0.457874 8.3:+75076982 MS.gene072269:CDS
TCATCACTGGTATCTTCTAC+TGG 0.458106 8.3:+75076784 MS.gene072269:CDS
GACAACTGGATCTATTGGGC+TGG 0.462914 8.3:+75077219 MS.gene072269:CDS
CTAGCAGTTGCTGTTTGCCA+TGG 0.466889 8.3:+75076660 MS.gene072269:CDS
TCAGTAACAACTCCTCCAAT+TGG 0.467322 8.3:-75076997 None:intergenic
CTTCTCCAGTTTGTCACTGG+AGG 0.467570 8.3:+75076843 MS.gene072269:CDS
TTGGCTGCAGGCCCATTCTC+CGG 0.481177 8.3:+75077138 MS.gene072269:CDS
GTTGGTTCAGCCATAGCCTA+TGG 0.499410 8.3:+75076118 MS.gene072269:CDS
ACAGTTGCACCCATTGCCAT+TGG 0.503181 8.3:+75077093 MS.gene072269:CDS
ACAATGAAACCAATGGCAAT+GGG 0.510446 8.3:-75077102 None:intergenic
CAGCAGCTGATCCAAAGAAA+GGG 0.511871 8.3:+75077061 MS.gene072269:CDS
TTTCTTTGGATCAGCTGCTG+TGG 0.517451 8.3:-75077058 None:intergenic
GATGCAGCTCTTGATCCAGC+AGG 0.519356 8.3:+75076633 MS.gene072269:CDS
AATCAAAAGTCACTAGAAAG+AGG 0.520771 8.3:-75077309 None:intergenic
TCAGCTGCTACACTGTGGAT+TGG 0.521297 8.3:-75076967 None:intergenic
GCTGGGCCTCTTATCGGTGG+TGG 0.521426 8.3:+75077237 MS.gene072269:CDS
CTGCAGGCCCATTCTCCGGC+GGG 0.524422 8.3:+75077142 MS.gene072269:CDS
AACAATGAAACCAATGGCAA+TGG 0.533814 8.3:-75077103 None:intergenic
CTCCGGCGGGTCAATGAACC+CGG 0.537997 8.3:+75077155 MS.gene072269:CDS
ACAGCAGCTGATCCAAAGAA+AGG 0.538310 8.3:+75077060 MS.gene072269:CDS
GTAGAAGATACCAGTGATGA+TGG 0.540575 8.3:-75076781 None:intergenic
CAGGCCCAAAAGATCTTGCC+GGG 0.541468 8.3:-75077173 None:intergenic
TAGAAACTTCTGAAGATGGC+TGG 0.543796 8.3:+75075998 None:intergenic
GCAACTGCTAGTAACCCTGC+TGG 0.551593 8.3:-75076648 None:intergenic
GGACAGATCACCATCATCAC+TGG 0.553513 8.3:+75076771 MS.gene072269:CDS
AGAAAACTAACCATAGGCTA+TGG 0.555965 8.3:-75076128 None:intergenic
GGTGCCAACATATTGGCTGC+AGG 0.556816 8.3:+75077126 MS.gene072269:CDS
TGGCTGGCATAGCATTTGGA+AGG 0.562910 8.3:+75076014 MS.gene072269:CDS
CCCAATAGATCCAGTTGTCG+TGG 0.571271 8.3:-75077215 None:intergenic
ACAACTGGATCTATTGGGCT+GGG 0.575806 8.3:+75077220 MS.gene072269:CDS
AAATTTCCACTAACAACTGC+AGG 0.577339 8.3:-75077192 None:intergenic
GAGAAGAAAACATGCAACAA+TGG 0.578089 8.3:-75076826 None:intergenic
TGCCGGGTTCATTGACCCGC+CGG 0.579953 8.3:-75077157 None:intergenic
TGGGCTGGGCCTCTTATCGG+TGG 0.584633 8.3:+75077234 MS.gene072269:CDS
GCTGCAGGCCCATTCTCCGG+CGG 0.592050 8.3:+75077141 MS.gene072269:CDS
TGGGCCTGCAGCCAATATGT+TGG 0.594871 8.3:-75077130 None:intergenic
GCTGAAGTAGGACCAATTGG+AGG 0.613066 8.3:+75076985 MS.gene072269:CDS
CACAGTGTAGCAGCTGAAGT+AGG 0.614482 8.3:+75076973 MS.gene072269:CDS
AGCAATATAGGCCTTAATTG+AGG 0.617601 8.3:-75076059 None:intergenic
GGCACCAACAATGAAACCAA+TGG 0.627058 8.3:-75077109 None:intergenic
CCAATCCAAAGGTGACAGCA+GGG 0.629836 8.3:-75076740 None:intergenic
AGCAGCTGATCCAAAGAAAG+GGG 0.630978 8.3:+75077062 MS.gene072269:CDS
TCCACCAAGAGCCAATCCAA+AGG 0.646031 8.3:-75076751 None:intergenic
ATGCAGCTCTTGATCCAGCA+GGG 0.652800 8.3:+75076634 MS.gene072269:CDS
GTTGGTGCAAACATTTCTGG+TGG 0.676373 8.3:+75076708 MS.gene072269:CDS
CTACTTCAGCTGCTACACTG+TGG 0.681799 8.3:-75076972 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTAATATTGTGATTTGT+TGG + chr8.3:75076935-75076954 MS.gene072269:intron 15.0%
!! AATAATCATAACATTTGGTT+TGG + chr8.3:75077020-75077039 MS.gene072269:CDS 20.0%
!! ACTATAATTCTAGTAGTAAT+GGG - chr8.3:75076195-75076214 None:intergenic 20.0%
!! ACTGAAATAATCATAACATT+TGG + chr8.3:75077015-75077034 MS.gene072269:CDS 20.0%
!! TACTATAATTCTAGTAGTAA+TGG - chr8.3:75076196-75076215 None:intergenic 20.0%
!!! AGTAACTTCATTTTATAAGT+TGG + chr8.3:75076453-75076472 MS.gene072269:intron 20.0%
!!! TTCATTTTATAAGTTGGAAA+GGG + chr8.3:75076459-75076478 MS.gene072269:intron 20.0%
! CATCAATAATTCAACTTCAA+TGG - chr8.3:75076228-75076247 None:intergenic 25.0%
! CTATAATTCTAGTAGTAATG+GGG - chr8.3:75076194-75076213 None:intergenic 25.0%
! GAAGTTACTAATATCAGAAA+CGG - chr8.3:75076442-75076461 None:intergenic 25.0%
!! TTGTTAAAGACGTTCAATTT+TGG + chr8.3:75076398-75076417 MS.gene072269:intron 25.0%
!!! CTTCATTTTATAAGTTGGAA+AGG + chr8.3:75076458-75076477 MS.gene072269:intron 25.0%
AAGAAGAGAAAACTAACCAT+AGG - chr8.3:75076137-75076156 None:intergenic 30.0%
GAACGTCTTTAACAATTAGA+CGG - chr8.3:75076393-75076412 None:intergenic 30.0%
TAAACGTTAGACGTCAAAAT+TGG + chr8.3:75076292-75076311 MS.gene072269:intron 30.0%
TTGTAACCTCAAGAGATAAA+CGG - chr8.3:75076495-75076514 None:intergenic 30.0%
! TTTCAGTTTTGCCTCAATTA+AGG + chr8.3:75076048-75076067 MS.gene072269:CDS 30.0%
!! TAATATTGTGATTTGTTGGC+AGG + chr8.3:75076939-75076958 MS.gene072269:intron 30.0%
!! TGTTCTTTGACTTAATTTGC+AGG + chr8.3:75076597-75076616 MS.gene072269:intron 30.0%
AAATTTCCACTAACAACTGC+AGG - chr8.3:75077195-75077214 None:intergenic 35.0%
AACAATGAAACCAATGGCAA+TGG - chr8.3:75077106-75077125 None:intergenic 35.0%
ACAATGAAACCAATGGCAAT+GGG - chr8.3:75077105-75077124 None:intergenic 35.0%
AGAAAACTAACCATAGGCTA+TGG - chr8.3:75076131-75076150 None:intergenic 35.0%
AGCAATATAGGCCTTAATTG+AGG - chr8.3:75076062-75076081 None:intergenic 35.0%
GAGAAGAAAACATGCAACAA+TGG - chr8.3:75076829-75076848 None:intergenic 35.0%
TGAGATGAACTCAGCAATAT+AGG - chr8.3:75076074-75076093 None:intergenic 35.0%
TTACAACCGTTTATCTCTTG+AGG + chr8.3:75076486-75076505 MS.gene072269:intron 35.0%
! CAACAAAAAGTGCAAAACCA+TGG - chr8.3:75076680-75076699 None:intergenic 35.0%
! TAATTCTAGTAGTAATGGGG+TGG - chr8.3:75076191-75076210 None:intergenic 35.0%
!! ATTGCCATTGGTTTCATTGT+TGG + chr8.3:75077105-75077124 MS.gene072269:CDS 35.0%
!!! ACTTTGCTCTTTGTTTTTGC+TGG + chr8.3:75076094-75076113 MS.gene072269:CDS 35.0%
GTAGAAGATACCAGTGATGA+TGG - chr8.3:75076784-75076803 None:intergenic 40.0%
TCAGTAACAACTCCTCCAAT+TGG - chr8.3:75077000-75077019 None:intergenic 40.0%
TCATCACTGGTATCTTCTAC+TGG + chr8.3:75076784-75076803 MS.gene072269:CDS 40.0%
TTTCTTCTCCAGTTTGTCAC+TGG + chr8.3:75076840-75076859 MS.gene072269:CDS 40.0%
!! CATTGTTGGTGCCAACATAT+TGG + chr8.3:75077119-75077138 MS.gene072269:CDS 40.0%
!! CTTTTTGTTGCTGTTGCAGT+TGG + chr8.3:75076690-75076709 MS.gene072269:CDS 40.0%
!!! CTCTTTGTTTTTGCTGGTGT+TGG + chr8.3:75076100-75076119 MS.gene072269:CDS 40.0%
ACAACTGGATCTATTGGGCT+GGG + chr8.3:75077220-75077239 MS.gene072269:CDS 45.0%
ACAGCAGCTGATCCAAAGAA+AGG + chr8.3:75077060-75077079 MS.gene072269:CDS 45.0%
AGCAGCTGATCCAAAGAAAG+GGG + chr8.3:75077062-75077081 MS.gene072269:CDS 45.0%
CAGCAGCTGATCCAAAGAAA+GGG + chr8.3:75077061-75077080 MS.gene072269:CDS 45.0%
CCACGACAACTGGATCTATT+GGG + chr8.3:75077215-75077234 MS.gene072269:CDS 45.0%
GATCCAAAGAAAGGGGCAAT+AGG + chr8.3:75077069-75077088 MS.gene072269:CDS 45.0%
GGCACCAACAATGAAACCAA+TGG - chr8.3:75077112-75077131 None:intergenic 45.0%
GTGGAAATTTCCACGACAAC+TGG + chr8.3:75077205-75077224 MS.gene072269:CDS 45.0%
TACTGGATTGCTCAGCTTCT+TGG + chr8.3:75076801-75076820 MS.gene072269:CDS 45.0%
TCCACGACAACTGGATCTAT+TGG + chr8.3:75077214-75077233 MS.gene072269:CDS 45.0%
TTTCTTTGGATCAGCTGCTG+TGG - chr8.3:75077061-75077080 None:intergenic 45.0%
! ATGAACCCGGCAAGATCTTT+TGG + chr8.3:75077168-75077187 MS.gene072269:CDS 45.0%
! GCAGTTGGTGCAAACATTTC+TGG + chr8.3:75076705-75076724 MS.gene072269:CDS 45.0%
! GTTGGTGCAAACATTTCTGG+TGG + chr8.3:75076708-75076727 MS.gene072269:CDS 45.0%
! TGAACCCGGCAAGATCTTTT+GGG + chr8.3:75077169-75077188 MS.gene072269:CDS 45.0%
ACAGTTGCACCCATTGCCAT+TGG + chr8.3:75077093-75077112 MS.gene072269:CDS 50.0%
ATGCAGCTCTTGATCCAGCA+GGG + chr8.3:75076634-75076653 MS.gene072269:CDS 50.0%
CACAGTGTAGCAGCTGAAGT+AGG + chr8.3:75076973-75076992 MS.gene072269:CDS 50.0%
CCAATCCAAAGGTGACAGCA+GGG - chr8.3:75076743-75076762 None:intergenic 50.0%
CCCAATAGATCCAGTTGTCG+TGG - chr8.3:75077218-75077237 None:intergenic 50.0%
CTACTTCAGCTGCTACACTG+TGG - chr8.3:75076975-75076994 None:intergenic 50.0%
CTTCTCCAGTTTGTCACTGG+AGG + chr8.3:75076843-75076862 MS.gene072269:CDS 50.0%
GACAACTGGATCTATTGGGC+TGG + chr8.3:75077219-75077238 MS.gene072269:CDS 50.0%
GCAGCTGAAGTAGGACCAAT+TGG + chr8.3:75076982-75077001 MS.gene072269:CDS 50.0%
GCTGAAGTAGGACCAATTGG+AGG + chr8.3:75076985-75077004 MS.gene072269:CDS 50.0%
GGACAGATCACCATCATCAC+TGG + chr8.3:75076771-75076790 MS.gene072269:CDS 50.0%
GGTTTGGCTGGGCTTATCTA+TGG + chr8.3:75077258-75077277 MS.gene072269:CDS 50.0%
GTGCCTATTGCCCCTTTCTT+TGG - chr8.3:75077075-75077094 None:intergenic 50.0%
TCAGCTGCTACACTGTGGAT+TGG - chr8.3:75076970-75076989 None:intergenic 50.0%
TCCACCAAGAGCCAATCCAA+AGG - chr8.3:75076754-75076773 None:intergenic 50.0%
TGGCTGGCATAGCATTTGGA+AGG + chr8.3:75076014-75076033 MS.gene072269:CDS 50.0%
TTTGGGCCTGCAGTTGTTAG+TGG + chr8.3:75077186-75077205 MS.gene072269:CDS 50.0%
! CTAGTAGTAATGGGGTGGCA+GGG - chr8.3:75076186-75076205 None:intergenic 50.0%
! GTTGGTTCAGCCATAGCCTA+TGG + chr8.3:75076118-75076137 MS.gene072269:CDS 50.0%
! TATTGGGCTGGGCCTCTTAT+CGG + chr8.3:75077231-75077250 MS.gene072269:CDS 50.0%
! TCTAGTAGTAATGGGGTGGC+AGG - chr8.3:75076187-75076206 None:intergenic 50.0%
! TTATCGGTGGTGGTTTGGCT+GGG + chr8.3:75077247-75077266 MS.gene072269:CDS 50.0%
!! ACCTTTGGATTGGCTCTTGG+TGG + chr8.3:75076750-75076769 MS.gene072269:CDS 50.0%
!! CTAGCAGTTGCTGTTTGCCA+TGG + chr8.3:75076660-75076679 MS.gene072269:CDS 50.0%
!! GTCACCTTTGGATTGGCTCT+TGG + chr8.3:75076747-75076766 MS.gene072269:CDS 50.0%
CAGGCCCAAAAGATCTTGCC+GGG - chr8.3:75077176-75077195 None:intergenic 55.0%
CCAAGCCTCCAGTGACAAAC+TGG - chr8.3:75076851-75076870 None:intergenic 55.0%
CCAGTTTGTCACTGGAGGCT+TGG + chr8.3:75076848-75076867 MS.gene072269:CDS 55.0%
CCCTGCTGTCACCTTTGGAT+TGG + chr8.3:75076740-75076759 MS.gene072269:CDS 55.0%
GATGCAGCTCTTGATCCAGC+AGG + chr8.3:75076633-75076652 MS.gene072269:CDS 55.0%
GCAACTGCTAGTAACCCTGC+TGG - chr8.3:75076651-75076670 None:intergenic 55.0%
GCAGGCCCAAAAGATCTTGC+CGG - chr8.3:75077177-75077196 None:intergenic 55.0%
GCCAAACCACCACCGATAAG+AGG - chr8.3:75077246-75077265 None:intergenic 55.0%
GCCAATCCAAAGGTGACAGC+AGG - chr8.3:75076744-75076763 None:intergenic 55.0%
GTCAACCCTGCTGTCACCTT+TGG + chr8.3:75076735-75076754 MS.gene072269:CDS 55.0%
TCATTGACCCGCCGGAGAAT+GGG - chr8.3:75077152-75077171 None:intergenic 55.0%
TGGGCCTGCAGCCAATATGT+TGG - chr8.3:75077133-75077152 None:intergenic 55.0%
TTCATTGACCCGCCGGAGAA+TGG - chr8.3:75077153-75077172 None:intergenic 55.0%
! AGTAATGGGGTGGCAGGGTT+AGG - chr8.3:75076181-75076200 None:intergenic 55.0%
! CTTATCGGTGGTGGTTTGGC+TGG + chr8.3:75077246-75077265 MS.gene072269:CDS 55.0%
! GCCTCTTATCGGTGGTGGTT+TGG + chr8.3:75077242-75077261 MS.gene072269:CDS 55.0%
! GGTGCCAACATATTGGCTGC+AGG + chr8.3:75077126-75077145 MS.gene072269:CDS 55.0%
TTGGCTGCAGGCCCATTCTC+CGG + chr8.3:75077138-75077157 MS.gene072269:CDS 60.0%
CTCCGGCGGGTCAATGAACC+CGG + chr8.3:75077155-75077174 MS.gene072269:CDS 65.0%
GCTGGGCCTCTTATCGGTGG+TGG + chr8.3:75077237-75077256 MS.gene072269:CDS 65.0%
TGCCGGGTTCATTGACCCGC+CGG - chr8.3:75077160-75077179 None:intergenic 65.0%
! TGGGCTGGGCCTCTTATCGG+TGG + chr8.3:75077234-75077253 MS.gene072269:CDS 65.0%
CTGCAGGCCCATTCTCCGGC+GGG + chr8.3:75077142-75077161 MS.gene072269:CDS 70.0%
GCTGCAGGCCCATTCTCCGG+CGG + chr8.3:75077141-75077160 MS.gene072269:CDS 70.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 75076013 75077329 75076013 ID=MS.gene072269
chr8.3 mRNA 75076013 75077329 75076013 ID=MS.gene072269.t1;Parent=MS.gene072269
chr8.3 exon 75076013 75076139 75076013 ID=MS.gene072269.t1.exon1;Parent=MS.gene072269.t1
chr8.3 CDS 75076013 75076139 75076013 ID=cds.MS.gene072269.t1;Parent=MS.gene072269.t1
chr8.3 exon 75076619 75076869 75076619 ID=MS.gene072269.t1.exon2;Parent=MS.gene072269.t1
chr8.3 CDS 75076619 75076869 75076619 ID=cds.MS.gene072269.t1;Parent=MS.gene072269.t1
chr8.3 exon 75076961 75077329 75076961 ID=MS.gene072269.t1.exon3;Parent=MS.gene072269.t1
chr8.3 CDS 75076961 75077329 75076961 ID=cds.MS.gene072269.t1;Parent=MS.gene072269.t1
Gene Sequence

>MS.gene072269

ATGGCTGGCATAGCATTTGGAAGGTTTGATGATTCTTTCAGTTTTGCCTCAATTAAGGCCTATATTGCTGAGTTCATCTCAACTTTGCTCTTTGTTTTTGCTGGTGTTGGTTCAGCCATAGCCTATGGTTAGTTTTCTCTTCTTTACAAGATAAATATACAATGTCCTAACCCTGCCACCCCATTACTACTAGAATTATAGTAAAGTTTTCACCATTGAAGTTGAATTATTGATGAAAATTAGATCAGAAAAGATAAAATTTATGTCAAAGTTCGTTGATAAACGTTAGACGTCAAAATTGGAGATTTATTTAATTTTTTCTGTGAGTAATTCGACAAAAATTTAGAGACATAAAAAGACAAAATACATCTTTATTTCCGTCTAATTGTTAAAGACGTTCAATTTTGGCGAGCAATTTTATTTTTTCCGTTTCTGATATTAGTAACTTCATTTTATAAGTTGGAAAGGGCATTTTACAACCGTTTATCTCTTGAGGTTACAAGTTCAAACTCTTACTATTGAAAAGAAGAAAAAAAAAATGAAAATAAGAGTATTTAAATTTCTTATTGAATAACAAAGATTATTGTTCTTTGACTTAATTTGCAGGTAAGTTGACATCAGATGCAGCTCTTGATCCAGCAGGGTTACTAGCAGTTGCTGTTTGCCATGGTTTTGCACTTTTTGTTGCTGTTGCAGTTGGTGCAAACATTTCTGGTGGTCATGTCAACCCTGCTGTCACCTTTGGATTGGCTCTTGGTGGACAGATCACCATCATCACTGGTATCTTCTACTGGATTGCTCAGCTTCTTGGCTCCATTGTTGCATGTTTTCTTCTCCAGTTTGTCACTGGAGGCTTGGTAAGTTCTTATCATAATGTTGAGTTCATTATAGTTAAGAATTAAGATTATAATATAATGTGCTGAAATTAATATTGTGATTTGTTGGCAGGAAACTCCAATCCACAGTGTAGCAGCTGAAGTAGGACCAATTGGAGGAGTTGTTACTGAAATAATCATAACATTTGGTTTGGTATACACAGTTTATGCCACAGCAGCTGATCCAAAGAAAGGGGCAATAGGCACAGTTGCACCCATTGCCATTGGTTTCATTGTTGGTGCCAACATATTGGCTGCAGGCCCATTCTCCGGCGGGTCAATGAACCCGGCAAGATCTTTTGGGCCTGCAGTTGTTAGTGGAAATTTCCACGACAACTGGATCTATTGGGCTGGGCCTCTTATCGGTGGTGGTTTGGCTGGGCTTATCTATGGCAACGTGTTCATGCGCACTGAACATGCACCTCTTTCTAGTGACTTTTGA
Protein sequence

>MS.gene072269.t1

MAGIAFGRFDDSFSFASIKAYIAEFISTLLFVFAGVGSAIAYGKLTSDAALDPAGLLAVAVCHGFALFVAVAVGANISGGHVNPAVTFGLALGGQITIITGIFYWIAQLLGSIVACFLLQFVTGGLETPIHSVAAEVGPIGGVVTEIIITFGLVYTVYATAADPKKGAIGTVAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGNFHDNWIYWAGPLIGGGLAGLIYGNVFMRTEHAPLSSDF