Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07388.t1 | XP_013468732.1 | 99.3 | 147 | 1 | 0 | 1 | 147 | 1 | 147 | 1.00E-74 | 289.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07388.t1 | Q8SAG3 | 79.6 | 147 | 26 | 1 | 1 | 147 | 1 | 143 | 9.4e-61 | 234.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07388.t1 | A0A072VL70 | 99.3 | 147 | 1 | 0 | 1 | 147 | 1 | 147 | 7.4e-75 | 289.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049341 | MS.gene07388 | 0.833923 | 4.03E-56 | -1.69E-46 |
| MS.gene049580 | MS.gene07388 | 0.828702 | 7.76E-55 | -1.69E-46 |
| MS.gene049808 | MS.gene07388 | 0.834606 | 2.72E-56 | -1.69E-46 |
| MS.gene049825 | MS.gene07388 | 0.800591 | 1.34E-48 | -1.69E-46 |
| MS.gene050277 | MS.gene07388 | 0.815815 | 7.62E-52 | -1.69E-46 |
| MS.gene051063 | MS.gene07388 | 0.80045 | 1.43E-48 | -1.69E-46 |
| MS.gene051687 | MS.gene07388 | 0.817399 | 3.37E-52 | -1.69E-46 |
| MS.gene051746 | MS.gene07388 | 0.842836 | 2.03E-58 | -1.69E-46 |
| MS.gene051748 | MS.gene07388 | 0.82235 | 2.48E-53 | -1.69E-46 |
| MS.gene051903 | MS.gene07388 | 0.82575 | 3.95E-54 | -1.69E-46 |
| MS.gene052133 | MS.gene07388 | 0.822483 | 2.31E-53 | -1.69E-46 |
| MS.gene052879 | MS.gene07388 | 0.801947 | 7.08E-49 | -1.69E-46 |
| MS.gene052947 | MS.gene07388 | 0.851205 | 1.03E-60 | -1.69E-46 |
| MS.gene053678 | MS.gene07388 | 0.800719 | 1.26E-48 | -1.69E-46 |
| MS.gene054250 | MS.gene07388 | 0.814897 | 1.22E-51 | -1.69E-46 |
| MS.gene055162 | MS.gene07388 | 0.801877 | 7.32E-49 | -1.69E-46 |
| MS.gene055555 | MS.gene07388 | 0.838895 | 2.19E-57 | -1.69E-46 |
| MS.gene055891 | MS.gene07388 | 0.805291 | 1.43E-49 | -1.69E-46 |
| MS.gene056043 | MS.gene07388 | -0.800498 | 1.40E-48 | -1.69E-46 |
| MS.gene056075 | MS.gene07388 | 0.837695 | 4.47E-57 | -1.69E-46 |
| MS.gene057234 | MS.gene07388 | 0.817639 | 2.97E-52 | -1.69E-46 |
| MS.gene057287 | MS.gene07388 | 0.81153 | 6.69E-51 | -1.69E-46 |
| MS.gene057705 | MS.gene07388 | 0.838896 | 2.19E-57 | -1.69E-46 |
| MS.gene058074 | MS.gene07388 | 0.809816 | 1.57E-50 | -1.69E-46 |
| MS.gene058852 | MS.gene07388 | 0.818196 | 2.22E-52 | -1.69E-46 |
| MS.gene058906 | MS.gene07388 | 0.805219 | 1.48E-49 | -1.69E-46 |
| MS.gene06001 | MS.gene07388 | 0.835063 | 2.09E-56 | -1.69E-46 |
| MS.gene060917 | MS.gene07388 | 0.813856 | 2.07E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07388.t1 | MTR_1g076170 | 99.320 | 147 | 1 | 0 | 1 | 147 | 1 | 147 | 1.46e-108 | 305 |
| MS.gene07388.t1 | MTR_7g096890 | 78.912 | 147 | 30 | 1 | 1 | 147 | 1 | 146 | 2.23e-86 | 249 |
| MS.gene07388.t1 | MTR_1g068950 | 62.319 | 138 | 52 | 0 | 10 | 147 | 2 | 139 | 1.82e-66 | 198 |
| MS.gene07388.t1 | MTR_4g073590 | 61.644 | 146 | 50 | 1 | 1 | 146 | 3 | 142 | 3.79e-66 | 197 |
| MS.gene07388.t1 | MTR_5g010430 | 61.314 | 137 | 51 | 1 | 10 | 146 | 4 | 138 | 1.23e-63 | 191 |
| MS.gene07388.t1 | MTR_8g098470 | 60.584 | 137 | 52 | 1 | 10 | 146 | 2 | 136 | 1.48e-61 | 186 |
| MS.gene07388.t1 | MTR_2g028670 | 55.797 | 138 | 61 | 0 | 10 | 147 | 2 | 139 | 1.14e-58 | 179 |
| MS.gene07388.t1 | MTR_8g088210 | 55.072 | 138 | 62 | 0 | 10 | 147 | 2 | 139 | 6.67e-56 | 172 |
| MS.gene07388.t1 | MTR_1g101190 | 58.394 | 137 | 55 | 1 | 10 | 146 | 463 | 597 | 5.48e-55 | 182 |
| MS.gene07388.t1 | MTR_8g088210 | 54.545 | 132 | 60 | 0 | 16 | 147 | 1 | 132 | 3.43e-52 | 162 |
| MS.gene07388.t1 | MTR_4g073590 | 58.416 | 101 | 36 | 1 | 1 | 101 | 3 | 97 | 3.17e-40 | 131 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07388.t1 | AT2G31200 | 76.190 | 147 | 34 | 1 | 1 | 147 | 1 | 146 | 6.42e-82 | 238 |
| MS.gene07388.t1 | AT5G59890 | 61.594 | 138 | 53 | 0 | 10 | 147 | 2 | 139 | 2.89e-65 | 195 |
| MS.gene07388.t1 | AT3G46010 | 57.931 | 145 | 61 | 0 | 3 | 147 | 6 | 150 | 8.31e-65 | 194 |
| MS.gene07388.t1 | AT4G00680 | 58.042 | 143 | 60 | 0 | 5 | 147 | 7 | 149 | 1.27e-64 | 194 |
| MS.gene07388.t1 | AT3G46010 | 60.145 | 138 | 55 | 0 | 10 | 147 | 2 | 139 | 2.34e-64 | 193 |
| MS.gene07388.t1 | AT4G00680 | 58.696 | 138 | 57 | 0 | 10 | 147 | 2 | 139 | 4.93e-64 | 192 |
| MS.gene07388.t1 | AT1G01750 | 58.696 | 138 | 57 | 0 | 10 | 147 | 2 | 139 | 1.87e-63 | 191 |
| MS.gene07388.t1 | AT1G01750 | 58.696 | 138 | 57 | 0 | 10 | 147 | 7 | 144 | 2.09e-63 | 191 |
| MS.gene07388.t1 | AT2G16700 | 58.503 | 147 | 55 | 1 | 1 | 147 | 3 | 143 | 2.93e-63 | 190 |
| MS.gene07388.t1 | AT4G25590 | 62.774 | 137 | 49 | 1 | 10 | 146 | 2 | 136 | 3.51e-63 | 190 |
| MS.gene07388.t1 | AT3G46000 | 60.870 | 138 | 52 | 1 | 10 | 147 | 2 | 137 | 2.57e-62 | 188 |
| MS.gene07388.t1 | AT3G46000 | 60.870 | 138 | 52 | 1 | 10 | 147 | 21 | 156 | 3.61e-62 | 188 |
| MS.gene07388.t1 | AT5G59890 | 61.364 | 132 | 51 | 0 | 16 | 147 | 1 | 132 | 2.07e-61 | 185 |
| MS.gene07388.t1 | AT5G59890 | 61.364 | 132 | 51 | 0 | 16 | 147 | 1 | 132 | 2.07e-61 | 185 |
| MS.gene07388.t1 | AT2G16700 | 61.364 | 132 | 51 | 0 | 16 | 147 | 1 | 132 | 1.08e-60 | 183 |
| MS.gene07388.t1 | AT2G16700 | 61.364 | 132 | 51 | 0 | 16 | 147 | 1 | 132 | 1.08e-60 | 183 |
| MS.gene07388.t1 | AT4G34970 | 58.394 | 137 | 57 | 0 | 11 | 147 | 5 | 141 | 1.92e-60 | 183 |
| MS.gene07388.t1 | AT5G52360 | 61.314 | 137 | 51 | 1 | 10 | 146 | 2 | 136 | 4.43e-60 | 182 |
| MS.gene07388.t1 | AT4G25590 | 62.595 | 131 | 47 | 1 | 16 | 146 | 1 | 129 | 1.66e-59 | 181 |
| MS.gene07388.t1 | AT5G59880 | 55.797 | 138 | 61 | 0 | 10 | 147 | 2 | 139 | 2.69e-59 | 180 |
| MS.gene07388.t1 | AT3G46000 | 60.606 | 132 | 50 | 1 | 16 | 147 | 1 | 130 | 1.29e-58 | 178 |
| MS.gene07388.t1 | AT5G59880 | 48.551 | 138 | 56 | 1 | 10 | 147 | 2 | 124 | 3.37e-46 | 146 |
| MS.gene07388.t1 | AT2G16700 | 50.427 | 117 | 51 | 2 | 1 | 117 | 3 | 112 | 9.26e-37 | 122 |
| MS.gene07388.t1 | AT3G45990 | 42.754 | 138 | 68 | 3 | 16 | 147 | 1 | 133 | 2.32e-34 | 117 |
Find 30 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTAGGGAAATGCATCTTC+TGG | 0.261866 | 1.2:-64400743 | MS.gene07388:intron |
| GCAGAGCGTAAGCACATTTC+AGG | 0.286465 | 1.2:-64400705 | MS.gene07388:CDS |
| GGGAATCCACTATGAGATTC+AGG | 0.356002 | 1.2:-64398711 | MS.gene07388:CDS |
| CAGGTTCAGAAGGGAGCTGC+AGG | 0.400251 | 1.2:-64398732 | MS.gene07388:CDS |
| GCTTTCAGAGTGGGAGTTGG+AGG | 0.419649 | 1.2:-64402092 | MS.gene07388:CDS |
| GTGATTAGTTCGCACGCTCC+TGG | 0.421098 | 1.2:+64398654 | None:intergenic |
| GATGTAGCATAAAGCATCTT+CGG | 0.454388 | 1.2:+64398761 | None:intergenic |
| ACTTCGAGTTCCATCTCTGT+TGG | 0.461999 | 1.2:+64398680 | None:intergenic |
| CTTCGAGTTCCATCTCTGTT+GGG | 0.469550 | 1.2:+64398681 | None:intergenic |
| TGTAGGGAAATGCATCTTCT+GGG | 0.504974 | 1.2:-64400742 | MS.gene07388:intron |
| CTTTCAGAGTGGGAGTTGGA+GGG | 0.516133 | 1.2:-64402091 | MS.gene07388:CDS |
| ATGGCTTTCAGAGTGGGAGT+TGG | 0.530306 | 1.2:-64402095 | MS.gene07388:CDS |
| TTTCAGAGTGGGAGTTGGAG+GGG | 0.532929 | 1.2:-64402090 | MS.gene07388:intron |
| ATAGCTATGGCTTTCAGAGT+GGG | 0.535262 | 1.2:-64402101 | None:intergenic |
| GGGAAATGCATCTTCTGGGA+TGG | 0.538512 | 1.2:-64400738 | MS.gene07388:CDS |
| CATCAAAGGACAGGTTCAGA+AGG | 0.548452 | 1.2:-64398742 | MS.gene07388:CDS |
| GGAAATGCATCTTCTGGGAT+GGG | 0.555903 | 1.2:-64400737 | MS.gene07388:CDS |
| GGCAACAGACCCAACAGAGA+TGG | 0.557284 | 1.2:-64398690 | MS.gene07388:CDS |
| GATGGAACTCGAAGTCCTCC+AGG | 0.560122 | 1.2:-64398672 | MS.gene07388:CDS |
| AAATCATCATAGCTCTCAGA+AGG | 0.561770 | 1.2:+64400596 | None:intergenic |
| GGACGAATACGAGCTACAGA+AGG | 0.568172 | 1.2:+64398782 | None:intergenic |
| CATAGCTATGGCTTTCAGAG+TGG | 0.573358 | 1.2:-64402102 | None:intergenic |
| CTGTTGCCTGAATCTCATAG+TGG | 0.585469 | 1.2:+64398705 | None:intergenic |
| TTTATGCTACATCAAAGGAC+AGG | 0.592719 | 1.2:-64398751 | MS.gene07388:CDS |
| GATGCTTTATGCTACATCAA+AGG | 0.601779 | 1.2:-64398756 | MS.gene07388:CDS |
| ATCAAAGGACAGGTTCAGAA+GGG | 0.621100 | 1.2:-64398741 | MS.gene07388:CDS |
| GCACATTTCAGGAATTGCAG+AGG | 0.661602 | 1.2:-64400694 | MS.gene07388:CDS |
| ATTAGTTCGCACGCTCCTGG+AGG | 0.663424 | 1.2:+64398657 | None:intergenic |
| AGGTTCAGAAGGGAGCTGCA+GGG | 0.689968 | 1.2:-64398731 | MS.gene07388:CDS |
| AATCATCATAGCTCTCAGAA+GGG | 0.724970 | 1.2:+64400597 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACATGATTGAAAAATATA+TGG | + | chr1.2:64398907-64398926 | None:intergenic | 15.0% |
| !! | AACACAAAAATGAATAAAAA+AGG | + | chr1.2:64401537-64401556 | None:intergenic | 15.0% |
| !! | ATTTGAATAAAAATTTCTGA+GGG | - | chr1.2:64399093-64399112 | MS.gene07388:intron | 15.0% |
| !!! | CTATTAAGTTTTATTAGATA+GGG | - | chr1.2:64400625-64400644 | MS.gene07388:CDS | 15.0% |
| !!! | TAAAAAATGCTTTTGATATT+TGG | - | chr1.2:64400846-64400865 | MS.gene07388:intron | 15.0% |
| !!! | TCTATTAAGTTTTATTAGAT+AGG | - | chr1.2:64400624-64400643 | MS.gene07388:CDS | 15.0% |
| !!! | TTAATTAGTTTATATACTGT+AGG | - | chr1.2:64401575-64401594 | MS.gene07388:intron | 15.0% |
| !! | AAAAAATGATAGAATGAAGA+TGG | + | chr1.2:64398696-64398715 | None:intergenic | 20.0% |
| !! | AATAATTCATATGAATGGAA+AGG | + | chr1.2:64401078-64401097 | None:intergenic | 20.0% |
| !! | ACACTTAATAATCATATCAA+AGG | + | chr1.2:64399436-64399455 | None:intergenic | 20.0% |
| !! | ACATATGTATATATTGCATT+TGG | - | chr1.2:64400370-64400389 | MS.gene07388:intron | 20.0% |
| !! | ACTTAATAATCATATCAAAG+GGG | + | chr1.2:64399434-64399453 | None:intergenic | 20.0% |
| !! | AGACAAATATAATCAAGTAT+TGG | + | chr1.2:64401024-64401043 | None:intergenic | 20.0% |
| !! | ATACTTGATTATATTTGTCT+CGG | - | chr1.2:64401024-64401043 | MS.gene07388:intron | 20.0% |
| !! | ATCACAATAATTCATATGAA+TGG | + | chr1.2:64401083-64401102 | None:intergenic | 20.0% |
| !! | ATTTATATACATCAGAATCA+TGG | - | chr1.2:64401631-64401650 | MS.gene07388:intron | 20.0% |
| !! | CACTTAATAATCATATCAAA+GGG | + | chr1.2:64399435-64399454 | None:intergenic | 20.0% |
| !! | CATTTGAATAAAAATTTCTG+AGG | - | chr1.2:64399092-64399111 | MS.gene07388:intron | 20.0% |
| !! | GACAATCTTAAAAAAAACTT+TGG | - | chr1.2:64401664-64401683 | MS.gene07388:intron | 20.0% |
| !! | TGATATGATTATTAAGTGTT+GGG | - | chr1.2:64399437-64399456 | MS.gene07388:intron | 20.0% |
| !! | TTCATATGAATTATTGTGAT+AGG | - | chr1.2:64401083-64401102 | MS.gene07388:intron | 20.0% |
| !! | TTGATATGATTATTAAGTGT+TGG | - | chr1.2:64399436-64399455 | MS.gene07388:intron | 20.0% |
| !!! | AAATAAAAAACCCTTTTAGA+AGG | + | chr1.2:64400917-64400936 | None:intergenic | 20.0% |
| !!! | GATTATTTTGGTTTGAAAAA+AGG | - | chr1.2:64399954-64399973 | MS.gene07388:intron | 20.0% |
| !!! | TAAAAAAGATTTTGCTCTTT+TGG | + | chr1.2:64400255-64400274 | None:intergenic | 20.0% |
| !!! | TTTGTGTTGATTTTTCTTTT+GGG | - | chr1.2:64401549-64401568 | MS.gene07388:intron | 20.0% |
| !!! | TTTTATTTTCTGCTTACATA+TGG | - | chr1.2:64401800-64401819 | MS.gene07388:intron | 20.0% |
| !!! | TTTTGTGTTGATTTTTCTTT+TGG | - | chr1.2:64401548-64401567 | MS.gene07388:intron | 20.0% |
| ! | AAACAACAATCACATGAATT+TGG | + | chr1.2:64401053-64401072 | None:intergenic | 25.0% |
| ! | AACTAAATCACCAATCAAAA+AGG | + | chr1.2:64399781-64399800 | None:intergenic | 25.0% |
| ! | AAGTTAAATGTAGATAGTGT+AGG | - | chr1.2:64399529-64399548 | MS.gene07388:intron | 25.0% |
| ! | AATTGATGAGAAAAAGAAAG+AGG | - | chr1.2:64400111-64400130 | MS.gene07388:intron | 25.0% |
| ! | AATTTCGTGTAACTAATATG+TGG | - | chr1.2:64399982-64400001 | MS.gene07388:intron | 25.0% |
| ! | ACTAAATCACCAATCAAAAA+GGG | + | chr1.2:64399780-64399799 | None:intergenic | 25.0% |
| ! | AGCATATTGCTAATTTACTA+GGG | - | chr1.2:64400648-64400667 | MS.gene07388:CDS | 25.0% |
| ! | AGTAAACTCAAGCAAAATAA+AGG | + | chr1.2:64401927-64401946 | None:intergenic | 25.0% |
| ! | AGTATAAAGTGAGAAAATCA+AGG | + | chr1.2:64399589-64399608 | None:intergenic | 25.0% |
| ! | ATACAGAATTAACAGTGATT+TGG | + | chr1.2:64401444-64401463 | None:intergenic | 25.0% |
| ! | ATTATAGTATTGTAGCGTAA+CGG | + | chr1.2:64401747-64401766 | None:intergenic | 25.0% |
| ! | CAATTGCAGAATATTATTGA+TGG | + | chr1.2:64401409-64401428 | None:intergenic | 25.0% |
| ! | CATAGAAAGAATGCAAAAAT+GGG | + | chr1.2:64399310-64399329 | None:intergenic | 25.0% |
| ! | GTATAAAGTGAGAAAATCAA+GGG | + | chr1.2:64399588-64399607 | None:intergenic | 25.0% |
| ! | TAATTCTGTATGTTTGGTAT+CGG | - | chr1.2:64401453-64401472 | MS.gene07388:intron | 25.0% |
| ! | TCCAATGATGTTAAGAAATT+AGG | - | chr1.2:64399197-64399216 | MS.gene07388:intron | 25.0% |
| ! | TGATAAACTAATTGCCTATT+TGG | + | chr1.2:64401129-64401148 | None:intergenic | 25.0% |
| !! | AAACATATATCTTCGCATTT+TGG | + | chr1.2:64399168-64399187 | None:intergenic | 25.0% |
| !! | ATTTTGCTTGAGTTTACTAA+TGG | - | chr1.2:64401929-64401948 | MS.gene07388:intron | 25.0% |
| !! | TTACTCAATTTTTCTTGCAT+TGG | - | chr1.2:64400328-64400347 | MS.gene07388:intron | 25.0% |
| !!! | ACTTTAGTATTCTTTTTTGG+GGG | - | chr1.2:64399927-64399946 | MS.gene07388:intron | 25.0% |
| !!! | AGGACTTTAGTATTCTTTTT+TGG | - | chr1.2:64399924-64399943 | MS.gene07388:intron | 25.0% |
| !!! | CTGGAATTTGAAATGATTTT+TGG | + | chr1.2:64400818-64400837 | None:intergenic | 25.0% |
| !!! | GACTTTAGTATTCTTTTTTG+GGG | - | chr1.2:64399926-64399945 | MS.gene07388:intron | 25.0% |
| !!! | GGACTTTAGTATTCTTTTTT+GGG | - | chr1.2:64399925-64399944 | MS.gene07388:intron | 25.0% |
| !!! | TAATATGTGGATTTGTTGTA+GGG | - | chr1.2:64399995-64400014 | MS.gene07388:intron | 25.0% |
| !!! | TCAGTTTTAATTTTGCTTTG+TGG | - | chr1.2:64398840-64398859 | MS.gene07388:intron | 25.0% |
| !!! | TCTGATGTATTATTTCTGTT+TGG | - | chr1.2:64401300-64401319 | MS.gene07388:intron | 25.0% |
| !!! | TTGTTTTTGTCGGATTTTAT+TGG | - | chr1.2:64398772-64398791 | MS.gene07388:CDS | 25.0% |
| !!! | TTTTGGTTTGAAAAAAGGAT+TGG | - | chr1.2:64399959-64399978 | MS.gene07388:intron | 25.0% |
| !!! | TTTTTTTTGCAATCCACTAT+TGG | + | chr1.2:64401706-64401725 | None:intergenic | 25.0% |
| AAATCAAACCAAAATCAGCA+TGG | + | chr1.2:64398740-64398759 | None:intergenic | 30.0% | |
| AACCAGATACTAAAAGAAAG+GGG | + | chr1.2:64400986-64401005 | None:intergenic | 30.0% | |
| AAGAAAAACCGCATAATATG+AGG | + | chr1.2:64398872-64398891 | None:intergenic | 30.0% | |
| ACAACCAGATACTAAAAGAA+AGG | + | chr1.2:64400988-64401007 | None:intergenic | 30.0% | |
| AGAAGTTTATGACTACACTT+CGG | + | chr1.2:64399636-64399655 | None:intergenic | 30.0% | |
| ATGAGATATATCTTACTCCA+GGG | + | chr1.2:64399734-64399753 | None:intergenic | 30.0% | |
| ATGCCTATTCTTAATCTTCA+TGG | - | chr1.2:64400560-64400579 | MS.gene07388:CDS | 30.0% | |
| CAACCAGATACTAAAAGAAA+GGG | + | chr1.2:64400987-64401006 | None:intergenic | 30.0% | |
| CACTGTTAATTCTGTATGTT+TGG | - | chr1.2:64401447-64401466 | MS.gene07388:intron | 30.0% | |
| CCATAGAAAGAATGCAAAAA+TGG | + | chr1.2:64399311-64399330 | None:intergenic | 30.0% | |
| CTAAATCACCAATCAAAAAG+GGG | + | chr1.2:64399779-64399798 | None:intergenic | 30.0% | |
| GAGCATATTGCTAATTTACT+AGG | - | chr1.2:64400647-64400666 | MS.gene07388:CDS | 30.0% | |
| GCCTAATTTCTTAACATCAT+TGG | + | chr1.2:64399201-64399220 | None:intergenic | 30.0% | |
| TATTCTTAATCTTCATGGGT+GGG | - | chr1.2:64400565-64400584 | MS.gene07388:CDS | 30.0% | |
| TGCCTATTCTTAATCTTCAT+GGG | - | chr1.2:64400561-64400580 | MS.gene07388:CDS | 30.0% | |
| TGTTAGAAGAATGTAGGAAA+CGG | - | chr1.2:64401178-64401197 | MS.gene07388:intron | 30.0% | |
| TTGTCAAATGAAATCTTGTG+CGG | - | chr1.2:64399227-64399246 | MS.gene07388:intron | 30.0% | |
| ! | CTAATGGATAATTGCTTTAC+AGG | - | chr1.2:64401945-64401964 | MS.gene07388:intron | 30.0% |
| ! | GCATATCTACAATCATTTTC+AGG | + | chr1.2:64400196-64400215 | None:intergenic | 30.0% |
| ! | GTGGATTGCAAAAAAAATAG+CGG | - | chr1.2:64401709-64401728 | MS.gene07388:intron | 30.0% |
| ! | TGCTTTTGATATTTGGCAAA+AGG | - | chr1.2:64400853-64400872 | MS.gene07388:intron | 30.0% |
| ! | TTCTTCCCACTACAAATTTT+GGG | - | chr1.2:64398815-64398834 | MS.gene07388:intron | 30.0% |
| ! | TTGAGTTACAAGTAGCTTTA+AGG | - | chr1.2:64399281-64399300 | MS.gene07388:intron | 30.0% |
| !! | CCATTTTTGCATTCTTTCTA+TGG | - | chr1.2:64399308-64399327 | MS.gene07388:intron | 30.0% |
| !! | CTAATATGTGGATTTGTTGT+AGG | - | chr1.2:64399994-64400013 | MS.gene07388:intron | 30.0% |
| !! | CTGTATTTTTGAATGGAGTA+GGG | - | chr1.2:64400682-64400701 | MS.gene07388:CDS | 30.0% |
| !! | TGTATTTTTGAATGGAGTAG+GGG | - | chr1.2:64400683-64400702 | MS.gene07388:CDS | 30.0% |
| !!! | AGCATTTTTTATCAAGAGTC+TGG | + | chr1.2:64400837-64400856 | None:intergenic | 30.0% |
| !!! | GCAAAATCTTTTTTATCGCA+TGG | - | chr1.2:64400260-64400279 | MS.gene07388:intron | 30.0% |
| !!! | TCGAATGTTGTTGTTTTTGT+CGG | - | chr1.2:64398762-64398781 | MS.gene07388:CDS | 30.0% |
| !!! | TTATACTCTAGTCACTTTTG+AGG | - | chr1.2:64399602-64399621 | MS.gene07388:intron | 30.0% |
| AAAATAATGTGACGTGGTAG+GGG | - | chr1.2:64401205-64401224 | MS.gene07388:intron | 35.0% | |
| AAATCATCATAGCTCTCAGA+AGG | + | chr1.2:64400160-64400179 | None:intergenic | 35.0% | |
| AACGAAAGTAGATTGCAGAA+AGG | + | chr1.2:64401385-64401404 | None:intergenic | 35.0% | |
| AACGCAACATGGTAAATGAA+AGG | + | chr1.2:64401866-64401885 | None:intergenic | 35.0% | |
| AATCATCATAGCTCTCAGAA+GGG | + | chr1.2:64400159-64400178 | None:intergenic | 35.0% | |
| AATGAGGAAAACAGCATGTT+TGG | + | chr1.2:64399883-64399902 | None:intergenic | 35.0% | |
| ACGAAAGTAGATTGCAGAAA+GGG | + | chr1.2:64401384-64401403 | None:intergenic | 35.0% | |
| ACTATAGTACCTTGTTGAAC+TGG | - | chr1.2:64400763-64400782 | MS.gene07388:intron | 35.0% | |
| ATACCATATATGTAGCCACT+GGG | + | chr1.2:64401497-64401516 | None:intergenic | 35.0% | |
| CACCCATGAAGATTAAGAAT+AGG | + | chr1.2:64400566-64400585 | None:intergenic | 35.0% | |
| CATACCAGTTGATTATAGCA+AGG | + | chr1.2:64400947-64400966 | None:intergenic | 35.0% | |
| CATGAGATATATCTTACTCC+AGG | + | chr1.2:64399735-64399754 | None:intergenic | 35.0% | |
| CTATAGTACCTTGTTGAACT+GGG | - | chr1.2:64400764-64400783 | MS.gene07388:intron | 35.0% | |
| CTATTCTTAATCTTCATGGG+TGG | - | chr1.2:64400564-64400583 | MS.gene07388:CDS | 35.0% | |
| CTCCATTCAAAAATACAGCT+TGG | + | chr1.2:64400680-64400699 | None:intergenic | 35.0% | |
| CTGGGATTCATTTCATTGAA+AGG | - | chr1.2:64399904-64399923 | MS.gene07388:intron | 35.0% | |
| GAAAATAATGTGACGTGGTA+GGG | - | chr1.2:64401204-64401223 | MS.gene07388:intron | 35.0% | |
| GATGAGAATGTGATCCAAAT+AGG | - | chr1.2:64401112-64401131 | MS.gene07388:intron | 35.0% | |
| GATGCTTTATGCTACATCAA+AGG | - | chr1.2:64401997-64402016 | MS.gene07388:intron | 35.0% | |
| GCATGTCTTTAGTACTTTCT+TGG | - | chr1.2:64399115-64399134 | MS.gene07388:intron | 35.0% | |
| GTGATTGAATGTACATGTGT+CGG | - | chr1.2:64399398-64399417 | MS.gene07388:intron | 35.0% | |
| GTGTGATGTTAGAAGAATGT+AGG | - | chr1.2:64401172-64401191 | MS.gene07388:intron | 35.0% | |
| GTTTATGCAAACGGTTCAAA+CGG | + | chr1.2:64400888-64400907 | None:intergenic | 35.0% | |
| TAAACCCATAGCCTTCTAAA+AGG | - | chr1.2:64400903-64400922 | MS.gene07388:intron | 35.0% | |
| TAAACTAGTGTTGCCAATAG+TGG | - | chr1.2:64401690-64401709 | MS.gene07388:intron | 35.0% | |
| TATAGTACCTTGTTGAACTG+GGG | - | chr1.2:64400765-64400784 | MS.gene07388:intron | 35.0% | |
| TCAGAGAAAATACACTTCTC+TGG | + | chr1.2:64401326-64401345 | None:intergenic | 35.0% | |
| TCTTTAGTACTTTCTTGGAC+AGG | - | chr1.2:64399120-64399139 | MS.gene07388:intron | 35.0% | |
| TGAATTATTGTGATAGGACC+CGG | - | chr1.2:64401089-64401108 | MS.gene07388:intron | 35.0% | |
| TGAGAAAAAGAAAGAGGTTG+TGG | - | chr1.2:64400117-64400136 | MS.gene07388:intron | 35.0% | |
| TGAGACCCAAAATTTGTAGT+GGG | + | chr1.2:64398823-64398842 | None:intergenic | 35.0% | |
| TGTCAAATTACAACTTCCTC+TGG | + | chr1.2:64401892-64401911 | None:intergenic | 35.0% | |
| TTATGACTACACTTCGGATT+TGG | + | chr1.2:64399630-64399649 | None:intergenic | 35.0% | |
| TTCTCTGCAAGCAGATAATA+GGG | + | chr1.2:64401772-64401791 | None:intergenic | 35.0% | |
| TTTATATACTGTAGGCATCC+TGG | - | chr1.2:64401583-64401602 | MS.gene07388:intron | 35.0% | |
| TTTATGCTACATCAAAGGAC+AGG | - | chr1.2:64402002-64402021 | MS.gene07388:intron | 35.0% | |
| TTTCTCTGCAAGCAGATAAT+AGG | + | chr1.2:64401773-64401792 | None:intergenic | 35.0% | |
| ! | AAACCCATAGCCTTCTAAAA+GGG | - | chr1.2:64400904-64400923 | MS.gene07388:intron | 35.0% |
| ! | ACAACCTTGCTATAATCAAC+TGG | - | chr1.2:64400940-64400959 | MS.gene07388:intron | 35.0% |
| ! | GATGTAGCATAAAGCATCTT+CGG | + | chr1.2:64401995-64402014 | None:intergenic | 35.0% |
| ! | GGTTGATTCCTCATATTATG+CGG | - | chr1.2:64398861-64398880 | MS.gene07388:intron | 35.0% |
| ! | GTTCTTCCCACTACAAATTT+TGG | - | chr1.2:64398814-64398833 | MS.gene07388:intron | 35.0% |
| ! | TACAGTTTCCCCTTTTTGAT+TGG | - | chr1.2:64399768-64399787 | MS.gene07388:intron | 35.0% |
| ! | TGTGACCATCTTGTTATAAG+CGG | - | chr1.2:64401249-64401268 | MS.gene07388:intron | 35.0% |
| ! | TTTTCTGCTTACATATGGAG+AGG | - | chr1.2:64401805-64401824 | MS.gene07388:intron | 35.0% |
| !! | AAAACCCTTTTAGAAGGCTA+TGG | + | chr1.2:64400911-64400930 | None:intergenic | 35.0% |
| !! | AAACCCTTTTAGAAGGCTAT+GGG | + | chr1.2:64400910-64400929 | None:intergenic | 35.0% |
| !! | AGAAGTGTATTTTCTCTGAG+AGG | - | chr1.2:64401327-64401346 | MS.gene07388:intron | 35.0% |
| !! | GATTATTAAGTGTTGGGATC+CGG | - | chr1.2:64399443-64399462 | MS.gene07388:intron | 35.0% |
| !! | GCTGTATTTTTGAATGGAGT+AGG | - | chr1.2:64400681-64400700 | MS.gene07388:CDS | 35.0% |
| !! | TCTACAATCATTTTCAGGCA+AGG | + | chr1.2:64400191-64400210 | None:intergenic | 35.0% |
| !! | TGCCAAGCTGTATTTTTGAA+TGG | - | chr1.2:64400675-64400694 | MS.gene07388:CDS | 35.0% |
| !! | TTTGGGGGAGTTGATTATTT+TGG | - | chr1.2:64399942-64399961 | MS.gene07388:intron | 35.0% |
| AAGTGAATTGCCCACTTTAG+AGG | + | chr1.2:64399471-64399490 | None:intergenic | 40.0% | |
| AGAAGAATGTAGGAAACGGA+GGG | - | chr1.2:64401182-64401201 | MS.gene07388:intron | 40.0% | |
| AGGCTATGGGTTTATGCAAA+CGG | + | chr1.2:64400897-64400916 | None:intergenic | 40.0% | |
| AGTTGTCCAAATCCATTGTG+TGG | - | chr1.2:64401148-64401167 | MS.gene07388:intron | 40.0% | |
| ATCAAAGGACAGGTTCAGAA+GGG | - | chr1.2:64402012-64402031 | MS.gene07388:intron | 40.0% | |
| CTCGTTCAGATTTCTGTCTT+CGG | + | chr1.2:64400448-64400467 | None:intergenic | 40.0% | |
| CTGAGACCCAAAATTTGTAG+TGG | + | chr1.2:64398824-64398843 | None:intergenic | 40.0% | |
| GAAGACAGAAATCTGAACGA+GGG | - | chr1.2:64400447-64400466 | MS.gene07388:intron | 40.0% | |
| GAATTATTGTGATAGGACCC+GGG | - | chr1.2:64401090-64401109 | MS.gene07388:intron | 40.0% | |
| GATACCATATATGTAGCCAC+TGG | + | chr1.2:64401498-64401517 | None:intergenic | 40.0% | |
| GCAAAGTGTGAAGATAGAGA+TGG | + | chr1.2:64401831-64401850 | None:intergenic | 40.0% | |
| GGAAAATAATGTGACGTGGT+AGG | - | chr1.2:64401203-64401222 | MS.gene07388:intron | 40.0% | |
| GGAAACTGTAAATATTCCCG+GGG | + | chr1.2:64399758-64399777 | None:intergenic | 40.0% | |
| GGGAAACTGTAAATATTCCC+GGG | + | chr1.2:64399759-64399778 | None:intergenic | 40.0% | |
| GGGGAAACTGTAAATATTCC+CGG | + | chr1.2:64399760-64399779 | None:intergenic | 40.0% | |
| GTAAGATATATCTCATGCCC+CGG | - | chr1.2:64399738-64399757 | MS.gene07388:intron | 40.0% | |
| GTTGTCCAAATCCATTGTGT+GGG | - | chr1.2:64401149-64401168 | MS.gene07388:intron | 40.0% | |
| TAAGATATATCTCATGCCCC+GGG | - | chr1.2:64399739-64399758 | MS.gene07388:intron | 40.0% | |
| TAGAAGAATGTAGGAAACGG+AGG | - | chr1.2:64401181-64401200 | MS.gene07388:intron | 40.0% | |
| TATCCCAGTGGCTACATATA+TGG | - | chr1.2:64401491-64401510 | MS.gene07388:intron | 40.0% | |
| TCAAAGCAACTTCATGCATG+AGG | + | chr1.2:64399265-64399284 | None:intergenic | 40.0% | |
| TCAGCATTGTCAGTTGAGAT+AGG | + | chr1.2:64398962-64398981 | None:intergenic | 40.0% | |
| TGAAATGAATCCCAGCAATG+AGG | + | chr1.2:64399899-64399918 | None:intergenic | 40.0% | |
| TGTAGGGAAATGCATCTTCT+GGG | - | chr1.2:64400011-64400030 | MS.gene07388:intron | 40.0% | |
| TTGTAGGGAAATGCATCTTC+TGG | - | chr1.2:64400010-64400029 | MS.gene07388:intron | 40.0% | |
| TTGTCCAAATCCATTGTGTG+GGG | - | chr1.2:64401150-64401169 | MS.gene07388:intron | 40.0% | |
| TTTGGATCACATTCTCATCC+CGG | + | chr1.2:64401111-64401130 | None:intergenic | 40.0% | |
| ! | CCAAAATCAGCATGGTCTTA+AGG | + | chr1.2:64398732-64398751 | None:intergenic | 40.0% |
| ! | GACCCCTTTCTTTTAGTATC+TGG | - | chr1.2:64400981-64401000 | MS.gene07388:intron | 40.0% |
| ! | GTGACCATCTTGTTATAAGC+GGG | - | chr1.2:64401250-64401269 | MS.gene07388:intron | 40.0% |
| !! | GTCGGATTTTATTGGTTGCA+TGG | - | chr1.2:64398780-64398799 | MS.gene07388:CDS | 40.0% |
| !! | TGTTTGGCAGAGCATTCTTT+TGG | + | chr1.2:64399867-64399886 | None:intergenic | 40.0% |
| !!! | ATGCTGTTTTCCTCATTGCT+GGG | - | chr1.2:64399886-64399905 | MS.gene07388:intron | 40.0% |
| !!! | CCTTAAGACCATGCTGATTT+TGG | - | chr1.2:64398729-64398748 | MS.gene07388:CDS | 40.0% |
| AACCTGTGAAGCATAGACAC+TGG | - | chr1.2:64399338-64399357 | MS.gene07388:intron | 45.0% | |
| ACCATGTTGCGTTAAACCAG+AGG | - | chr1.2:64401873-64401892 | MS.gene07388:intron | 45.0% | |
| AGATTGTCGATCTTGAGACC+AGG | + | chr1.2:64401604-64401623 | None:intergenic | 45.0% | |
| ATTGCTACTAGCGTCAGTGT+CGG | + | chr1.2:64399372-64399391 | None:intergenic | 45.0% | |
| CATCAAAGGACAGGTTCAGA+AGG | - | chr1.2:64402011-64402030 | MS.gene07388:intron | 45.0% | |
| CCTACCCGCTTATAACAAGA+TGG | + | chr1.2:64401257-64401276 | None:intergenic | 45.0% | |
| CGAAGACAGAAATCTGAACG+AGG | - | chr1.2:64400446-64400465 | MS.gene07388:intron | 45.0% | |
| CTGTTGCCTGAATCTCATAG+TGG | + | chr1.2:64402051-64402070 | None:intergenic | 45.0% | |
| GAGGTTGTGGTCGAAAAAAC+TGG | - | chr1.2:64400130-64400149 | MS.gene07388:intron | 45.0% | |
| GCACATTTCAGGAATTGCAG+AGG | - | chr1.2:64400059-64400078 | MS.gene07388:intron | 45.0% | |
| GGAGGGAAAATAATGTGACG+TGG | - | chr1.2:64401199-64401218 | MS.gene07388:intron | 45.0% | |
| GGGAATCCACTATGAGATTC+AGG | - | chr1.2:64402042-64402061 | MS.gene07388:intron | 45.0% | |
| GTTGTGGTCGAAAAAACTGG+AGG | - | chr1.2:64400133-64400152 | MS.gene07388:intron | 45.0% | |
| TAACATCACACCCCACACAA+TGG | + | chr1.2:64401163-64401182 | None:intergenic | 45.0% | |
| TTGGATCACATTCTCATCCC+GGG | + | chr1.2:64401110-64401129 | None:intergenic | 45.0% | |
| ! | ACTTCGAGTTCCATCTCTGT+TGG | + | chr1.2:64402076-64402095 | None:intergenic | 45.0% |
| ! | ATTGCCCACTTTAGAGGATC+CGG | + | chr1.2:64399465-64399484 | None:intergenic | 45.0% |
| ! | CCATCTTGTTATAAGCGGGT+AGG | - | chr1.2:64401254-64401273 | MS.gene07388:intron | 45.0% |
| ! | CTTCGAGTTCCATCTCTGTT+GGG | + | chr1.2:64402075-64402094 | None:intergenic | 45.0% |
| ! | TCCTCTGGTTTAACGCAACA+TGG | + | chr1.2:64401877-64401896 | None:intergenic | 45.0% |
| ! | TCTTGTTATAAGCGGGTAGG+AGG | - | chr1.2:64401257-64401276 | MS.gene07388:intron | 45.0% |
| !! | GGAAATGCATCTTCTGGGAT+GGG | - | chr1.2:64400016-64400035 | MS.gene07388:intron | 45.0% |
| !!! | CATGCTGTTTTCCTCATTGC+TGG | - | chr1.2:64399885-64399904 | MS.gene07388:intron | 45.0% |
| AATGTGACGTGGTAGGGGAT+GGG | - | chr1.2:64401210-64401229 | MS.gene07388:intron | 50.0% | |
| ACGATCGTTTCCGAGCGAAA+GGG | + | chr1.2:64398999-64399018 | None:intergenic | 50.0% | |
| ATGCAGTCCCCAGTTCAACA+AGG | + | chr1.2:64400775-64400794 | None:intergenic | 50.0% | |
| ATGGCTTTCAGAGTGGGAGT+TGG | - | chr1.2:64398658-64398677 | MS.gene07388:CDS | 50.0% | |
| CGCATCATACTGTATCCCAG+TGG | - | chr1.2:64401479-64401498 | MS.gene07388:intron | 50.0% | |
| CTTTCAGAGTGGGAGTTGGA+GGG | - | chr1.2:64398662-64398681 | MS.gene07388:CDS | 50.0% | |
| GCAGAGCGTAAGCACATTTC+AGG | - | chr1.2:64400048-64400067 | MS.gene07388:intron | 50.0% | |
| GGACGAATACGAGCTACAGA+AGG | + | chr1.2:64401974-64401993 | None:intergenic | 50.0% | |
| GTCCAGTGTCTATGCTTCAC+AGG | + | chr1.2:64399343-64399362 | None:intergenic | 50.0% | |
| GTGTGTTAGACCCTTTCGCT+CGG | - | chr1.2:64398986-64399005 | MS.gene07388:intron | 50.0% | |
| GTTATAAGCGGGTAGGAGGA+GGG | - | chr1.2:64401261-64401280 | MS.gene07388:intron | 50.0% | |
| TAATGTGACGTGGTAGGGGA+TGG | - | chr1.2:64401209-64401228 | MS.gene07388:intron | 50.0% | |
| TGAGAGGAGCCTAGCTATGT+GGG | - | chr1.2:64401343-64401362 | MS.gene07388:intron | 50.0% | |
| TGTTATAAGCGGGTAGGAGG+AGG | - | chr1.2:64401260-64401279 | MS.gene07388:intron | 50.0% | |
| TTTCAGAGTGGGAGTTGGAG+GGG | - | chr1.2:64398663-64398682 | MS.gene07388:CDS | 50.0% | |
| ! | CACACCCCACACAATGGATT+TGG | + | chr1.2:64401157-64401176 | None:intergenic | 50.0% |
| ! | GGGAAATGCATCTTCTGGGA+TGG | - | chr1.2:64400015-64400034 | MS.gene07388:intron | 50.0% |
| ! | TGCATGCACATTTTGTGCCC+TGG | - | chr1.2:64399714-64399733 | MS.gene07388:intron | 50.0% |
| !! | GGATCCGGATCCTCTAAAGT+GGG | - | chr1.2:64399458-64399477 | MS.gene07388:intron | 50.0% |
| AGGTTCAGAAGGGAGCTGCA+GGG | - | chr1.2:64402022-64402041 | MS.gene07388:intron | 55.0% | |
| ATGTGACGTGGTAGGGGATG+GGG | - | chr1.2:64401211-64401230 | MS.gene07388:intron | 55.0% | |
| CACGATCGTTTCCGAGCGAA+AGG | + | chr1.2:64399000-64399019 | None:intergenic | 55.0% | |
| CCTAGCTATGTGGGTAGAGG+AGG | - | chr1.2:64401352-64401371 | MS.gene07388:intron | 55.0% | |
| CCTCCTCTACCCACATAGCT+AGG | + | chr1.2:64401355-64401374 | None:intergenic | 55.0% | |
| CTGAGAGGAGCCTAGCTATG+TGG | - | chr1.2:64401342-64401361 | MS.gene07388:intron | 55.0% | |
| GAGCCTAGCTATGTGGGTAG+AGG | - | chr1.2:64401349-64401368 | MS.gene07388:intron | 55.0% | |
| GATGGAACTCGAAGTCCTCC+AGG | - | chr1.2:64402081-64402100 | MS.gene07388:intron | 55.0% | |
| GCTTTCAGAGTGGGAGTTGG+AGG | - | chr1.2:64398661-64398680 | MS.gene07388:CDS | 55.0% | |
| GGCAACAGACCCAACAGAGA+TGG | - | chr1.2:64402063-64402082 | MS.gene07388:intron | 55.0% | |
| ! | GGGATCCGGATCCTCTAAAG+TGG | - | chr1.2:64399457-64399476 | MS.gene07388:intron | 55.0% |
| CAGGTTCAGAAGGGAGCTGC+AGG | - | chr1.2:64402021-64402040 | MS.gene07388:intron | 60.0% | |
| GGGTAGGAGGAGGGAGAGAA+AGG | - | chr1.2:64401270-64401289 | MS.gene07388:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 64398658 | 64402117 | 64398658 | ID=MS.gene07388 |
| chr1.2 | mRNA | 64398658 | 64402117 | 64398658 | ID=MS.gene07388.t1;Parent=MS.gene07388 |
| chr1.2 | exon | 64402091 | 64402117 | 64402091 | ID=MS.gene07388.t1.exon1;Parent=MS.gene07388.t1 |
| chr1.2 | CDS | 64402091 | 64402117 | 64402091 | ID=cds.MS.gene07388.t1;Parent=MS.gene07388.t1 |
| chr1.2 | exon | 64400494 | 64400759 | 64400494 | ID=MS.gene07388.t1.exon2;Parent=MS.gene07388.t1 |
| chr1.2 | CDS | 64400494 | 64400759 | 64400494 | ID=cds.MS.gene07388.t1;Parent=MS.gene07388.t1 |
| chr1.2 | exon | 64398658 | 64398808 | 64398658 | ID=MS.gene07388.t1.exon3;Parent=MS.gene07388.t1 |
| chr1.2 | CDS | 64398658 | 64398808 | 64398658 | ID=cds.MS.gene07388.t1;Parent=MS.gene07388.t1 |
| Gene Sequence |
| Protein sequence |
