Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074206.t1 | XP_013451320.1 | 90.8 | 457 | 39 | 2 | 1 | 457 | 1 | 454 | 7.60E-60 | 241.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074206.t1 | A0A072UHW8 | 90.8 | 457 | 39 | 2 | 1 | 457 | 1 | 454 | 5.5e-60 | 241.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene074206 | 0.809527 | 1.81E-50 | -1.69E-46 |
| MS.gene049711 | MS.gene074206 | 0.816205 | 6.23E-52 | -1.69E-46 |
| MS.gene049821 | MS.gene074206 | 0.806246 | 9.03E-50 | -1.69E-46 |
| MS.gene049850 | MS.gene074206 | 0.820721 | 5.91E-53 | -1.69E-46 |
| MS.gene050657 | MS.gene074206 | 0.816129 | 6.49E-52 | -1.69E-46 |
| MS.gene050901 | MS.gene074206 | 0.810632 | 1.05E-50 | -1.69E-46 |
| MS.gene051021 | MS.gene074206 | 0.807157 | 5.80E-50 | -1.69E-46 |
| MS.gene051247 | MS.gene074206 | 0.816168 | 6.36E-52 | -1.69E-46 |
| MS.gene051279 | MS.gene074206 | 0.816714 | 4.79E-52 | -1.69E-46 |
| MS.gene05157 | MS.gene074206 | 0.823365 | 1.44E-53 | -1.69E-46 |
| MS.gene051700 | MS.gene074206 | 0.803231 | 3.85E-49 | -1.69E-46 |
| MS.gene051719 | MS.gene074206 | 0.873743 | 1.16E-67 | -1.69E-46 |
| MS.gene051720 | MS.gene074206 | 0.88949 | 2.31E-73 | -1.69E-46 |
| MS.gene052133 | MS.gene074206 | 0.811722 | 6.07E-51 | -1.69E-46 |
| MS.gene052463 | MS.gene074206 | 0.819384 | 1.19E-52 | -1.69E-46 |
| MS.gene052516 | MS.gene074206 | 0.824272 | 8.83E-54 | -1.69E-46 |
| MS.gene052665 | MS.gene074206 | 0.808857 | 2.52E-50 | -1.69E-46 |
| MS.gene052732 | MS.gene074206 | 0.801611 | 8.30E-49 | -1.69E-46 |
| MS.gene053079 | MS.gene074206 | 0.800097 | 1.69E-48 | -1.69E-46 |
| MS.gene053122 | MS.gene074206 | 0.806139 | 9.51E-50 | -1.69E-46 |
| MS.gene053144 | MS.gene074206 | 0.842181 | 3.02E-58 | -1.69E-46 |
| MS.gene053164 | MS.gene074206 | 0.809056 | 2.28E-50 | -1.69E-46 |
| MS.gene053171 | MS.gene074206 | 0.801467 | 8.88E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene074206 | 0.816933 | 4.28E-52 | -1.69E-46 |
| MS.gene053581 | MS.gene074206 | 0.818162 | 2.26E-52 | -1.69E-46 |
| MS.gene053599 | MS.gene074206 | 0.800597 | 1.34E-48 | -1.69E-46 |
| MS.gene05423 | MS.gene074206 | 0.806191 | 9.27E-50 | -1.69E-46 |
| MS.gene054584 | MS.gene074206 | 0.848797 | 4.87E-60 | -1.69E-46 |
| MS.gene054775 | MS.gene074206 | 0.822046 | 2.92E-53 | -1.69E-46 |
| MS.gene054991 | MS.gene074206 | 0.801814 | 7.54E-49 | -1.69E-46 |
| MS.gene055144 | MS.gene074206 | 0.800641 | 1.31E-48 | -1.69E-46 |
| MS.gene055465 | MS.gene074206 | 0.871024 | 9.36E-67 | -1.69E-46 |
| MS.gene055466 | MS.gene074206 | 0.855736 | 5.17E-62 | -1.69E-46 |
| MS.gene055468 | MS.gene074206 | 0.851217 | 1.02E-60 | -1.69E-46 |
| MS.gene055469 | MS.gene074206 | 0.848729 | 5.09E-60 | -1.69E-46 |
| MS.gene055513 | MS.gene074206 | 0.809584 | 1.76E-50 | -1.69E-46 |
| MS.gene055537 | MS.gene074206 | 0.856997 | 2.20E-62 | -1.69E-46 |
| MS.gene055580 | MS.gene074206 | -0.853631 | 2.10E-61 | -1.69E-46 |
| MS.gene055891 | MS.gene074206 | 0.801861 | 7.37E-49 | -1.69E-46 |
| MS.gene056005 | MS.gene074206 | 0.803632 | 3.18E-49 | -1.69E-46 |
| MS.gene056043 | MS.gene074206 | -0.835464 | 1.65E-56 | -1.69E-46 |
| MS.gene056215 | MS.gene074206 | 0.807698 | 4.45E-50 | -1.69E-46 |
| MS.gene056308 | MS.gene074206 | 0.82017 | 7.90E-53 | -1.69E-46 |
| MS.gene057294 | MS.gene074206 | 0.807109 | 5.94E-50 | -1.69E-46 |
| MS.gene057915 | MS.gene074206 | 0.801606 | 8.32E-49 | -1.69E-46 |
| MS.gene058087 | MS.gene074206 | 0.822962 | 1.79E-53 | -1.69E-46 |
| MS.gene058339 | MS.gene074206 | 0.821833 | 3.27E-53 | -1.69E-46 |
| MS.gene058625 | MS.gene074206 | 0.816165 | 6.36E-52 | -1.69E-46 |
| MS.gene058668 | MS.gene074206 | 0.801619 | 8.27E-49 | -1.69E-46 |
| MS.gene059084 | MS.gene074206 | 0.818773 | 1.65E-52 | -1.69E-46 |
| MS.gene059625 | MS.gene074206 | 0.81671 | 4.81E-52 | -1.69E-46 |
| MS.gene060519 | MS.gene074206 | 0.829227 | 5.79E-55 | -1.69E-46 |
| MS.gene060587 | MS.gene074206 | 0.829028 | 6.47E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074206.t1 | MTR_6g018780 | 92.560 | 457 | 31 | 2 | 1 | 457 | 1 | 454 | 0.0 | 845 |
| MS.gene074206.t1 | MTR_7g082230 | 53.191 | 141 | 54 | 5 | 314 | 450 | 45 | 177 | 1.07e-31 | 120 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074206.t1 | AT5G38300 | 49.505 | 101 | 39 | 4 | 337 | 435 | 144 | 234 | 6.19e-16 | 78.2 |
| MS.gene074206.t1 | AT1G67035 | 47.059 | 102 | 36 | 5 | 339 | 435 | 107 | 195 | 4.51e-14 | 72.0 |
Find 97 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTCAACCAAATTCCTTTC+TGG | 0.129782 | 6.2:+14923558 | None:intergenic |
| TTGAATTTGAATTTGAATTT+TGG | 0.204549 | 6.2:+14923748 | None:intergenic |
| CTTAACCTCTTTCTTTGTTC+TGG | 0.226938 | 6.2:+14923284 | None:intergenic |
| TTTCATGGTGGATTTGCTTA+TGG | 0.228551 | 6.2:-14923051 | MS.gene074206:CDS |
| TCCTCTTGCTTCACCATTGA+TGG | 0.232858 | 6.2:+14922519 | None:intergenic |
| TTTGAAGGTGATTTGGGTTA+TGG | 0.234233 | 6.2:-14923261 | MS.gene074206:CDS |
| TGGTTAAGGATCAATGAAAT+TGG | 0.265606 | 6.2:+14923768 | None:intergenic |
| TTTCAAGGTGGATTTGGTTA+TGG | 0.268019 | 6.2:-14922946 | MS.gene074206:CDS |
| GTTAACCTCTTTACTTGTTT+TGG | 0.268573 | 6.2:+14923074 | None:intergenic |
| CTTGTTTCTTGTGGGAGAAA+TGG | 0.269447 | 6.2:-14923357 | MS.gene074206:CDS |
| TGTTGACCCAGAAAGGAATT+TGG | 0.281401 | 6.2:-14923565 | MS.gene074206:CDS |
| AATGGAACAAGAAGAAAATT+TGG | 0.281543 | 6.2:-14923016 | MS.gene074206:CDS |
| TTTGTTCTGGATGCAAATTT+TGG | 0.291455 | 6.2:+14923297 | None:intergenic |
| CAAACCAACCTTGTCCTCTA+AGG | 0.295035 | 6.2:-14923728 | MS.gene074206:CDS |
| TTCGATGGTGATTTGGGTTA+TGG | 0.296857 | 6.2:-14923537 | MS.gene074206:CDS |
| TTGAAGGTGATTTGGGTTAT+GGG | 0.301077 | 6.2:-14923260 | MS.gene074206:CDS |
| GGTTAAGTTTGAAGGTGATT+TGG | 0.308687 | 6.2:-14923268 | MS.gene074206:CDS |
| TTCAAGGTGGATTTGGTTAT+GGG | 0.309630 | 6.2:-14922945 | MS.gene074206:CDS |
| GTTAAGTTTGAAGGTGATTT+GGG | 0.317289 | 6.2:-14923267 | MS.gene074206:CDS |
| TTCATGGTGGATTTGCTTAT+GGG | 0.321123 | 6.2:-14923050 | MS.gene074206:CDS |
| TGAAGTAGAGGTTCAAGAAT+TGG | 0.327921 | 6.2:+14923801 | None:intergenic |
| GGGAAAAGAGGTTGCAGTTA+AGG | 0.328889 | 6.2:-14923638 | MS.gene074206:CDS |
| GTTAGGTTTCAAGGTGGATT+TGG | 0.330231 | 6.2:-14922952 | MS.gene074206:CDS |
| TCGATGGTGATTTGGGTTAT+GGG | 0.339482 | 6.2:-14923536 | MS.gene074206:CDS |
| AGTAAAGAGGTTAACTTTCA+TGG | 0.341553 | 6.2:-14923066 | MS.gene074206:CDS |
| GGTTGAGTTCGATGGTGATT+TGG | 0.351012 | 6.2:-14923544 | MS.gene074206:CDS |
| TTGTGGGAGAAATGGGTCTT+TGG | 0.351667 | 6.2:-14923349 | MS.gene074206:CDS |
| TCTAAAGGAGTAAGCCTTAG+AGG | 0.352135 | 6.2:+14923714 | None:intergenic |
| TTGTTTCTTGTGGGAGAAAT+GGG | 0.366891 | 6.2:-14923356 | MS.gene074206:CDS |
| TTATGGGAGAAAAGGTTCTA+TGG | 0.377909 | 6.2:-14922929 | MS.gene074206:CDS |
| GTTGAGTTCGATGGTGATTT+GGG | 0.381600 | 6.2:-14923543 | MS.gene074206:CDS |
| ACTCAACCAAATTCCTTTCT+GGG | 0.393347 | 6.2:+14923559 | None:intergenic |
| AAGAAAGAGGTTAAGTTTGA+AGG | 0.396584 | 6.2:-14923276 | MS.gene074206:CDS |
| GATTGAATCAGAGAAAGTTT+TGG | 0.402844 | 6.2:-14923478 | MS.gene074206:CDS |
| GATAACTTTGAAGGTGGATC+TGG | 0.406902 | 6.2:-14923438 | MS.gene074206:CDS |
| GATTTGGGTTATGGGAGAAA+TGG | 0.411151 | 6.2:-14923528 | MS.gene074206:CDS |
| CATAACTCCATTATCATCCT+TGG | 0.412396 | 6.2:+14922687 | None:intergenic |
| TTCAAGGTGGATTGGTTAGT+GGG | 0.421334 | 6.2:-14922843 | MS.gene074206:CDS |
| AGAAAAGAGGTTAAGTTTCA+AGG | 0.427742 | 6.2:-14922859 | MS.gene074206:CDS |
| AAGAAAACGGTTGGCGGCGG+TGG | 0.428638 | 6.2:-14922616 | MS.gene074206:CDS |
| GAAGTAGAGGTTCAAGAATT+GGG | 0.429631 | 6.2:+14923802 | None:intergenic |
| TTTCAAGGTGGATTGGTTAG+TGG | 0.436808 | 6.2:-14922844 | MS.gene074206:CDS |
| CTCAATACAGCAGAGAAATC+AGG | 0.438389 | 6.2:+14922787 | None:intergenic |
| AGGAAAGAGGTTAGGTTTCA+AGG | 0.439962 | 6.2:-14922961 | MS.gene074206:CDS |
| ATTTGGGTTATGGGAGAAAT+GGG | 0.443961 | 6.2:-14923527 | MS.gene074206:CDS |
| AAAACGGTTGGCGGCGGTGG+CGG | 0.448986 | 6.2:-14922613 | MS.gene074206:CDS |
| GGATTTGGTTATGGGAGAAA+AGG | 0.457666 | 6.2:-14922937 | MS.gene074206:CDS |
| CCTCAACAAGGAAAGAGGTT+AGG | 0.463514 | 6.2:-14922969 | MS.gene074206:CDS |
| GATTTGGGTTATGGGAGAAA+AGG | 0.464132 | 6.2:-14923252 | MS.gene074206:CDS |
| CTGATTTCTCTGCTGTATTG+AGG | 0.464776 | 6.2:-14922786 | MS.gene074206:CDS |
| CTGTATTGAGGAAAGAGAAT+AGG | 0.466893 | 6.2:-14922774 | MS.gene074206:CDS |
| GGGAGCAAGTCAGAGAGTGC+AGG | 0.467142 | 6.2:-14922652 | MS.gene074206:CDS |
| TGCAACCAAAACAAGTAAAG+AGG | 0.470161 | 6.2:-14923079 | MS.gene074206:CDS |
| ATGCTTGCATTGATGAGCTT+AGG | 0.472666 | 6.2:-14922567 | MS.gene074206:CDS |
| GGTTAAGTTTCAAGGTGGAT+TGG | 0.473263 | 6.2:-14922851 | MS.gene074206:CDS |
| TTATGAGAGAAAAGGGTCAT+TGG | 0.474606 | 6.2:-14923415 | MS.gene074206:CDS |
| GGATTTGCTTATGGGAGAAA+AGG | 0.475489 | 6.2:-14923042 | MS.gene074206:CDS |
| TTATGGGAGAAAAGGGTCAT+TGG | 0.475958 | 6.2:-14923244 | MS.gene074206:CDS |
| AGGAATTTGGTTGAGTTCGA+TGG | 0.485186 | 6.2:-14923552 | MS.gene074206:CDS |
| TTATGGGAGAAAAGGGTTGT+TGG | 0.492331 | 6.2:-14923139 | MS.gene074206:CDS |
| TGTAGCCTCAACAAGGAAAG+AGG | 0.497480 | 6.2:-14922974 | MS.gene074206:CDS |
| ATGATCGTTATGCTGAATTG+AGG | 0.497816 | 6.2:-14923659 | MS.gene074206:CDS |
| GGATCTGGTTATGAGAGAAA+AGG | 0.497835 | 6.2:-14923423 | MS.gene074206:CDS |
| TGCATCCAGAACAAAGAAAG+AGG | 0.499381 | 6.2:-14923289 | MS.gene074206:CDS |
| ATTTGGGTTATGGGAGAAAA+GGG | 0.506933 | 6.2:-14923251 | MS.gene074206:CDS |
| GAATTATTTGCCTGCAGTGA+TGG | 0.512436 | 6.2:-14922743 | MS.gene074206:CDS |
| ATAACAAAACTATCTTCTAA+AGG | 0.512774 | 6.2:+14923699 | None:intergenic |
| GTCATTATCTCCATCACTGC+AGG | 0.516529 | 6.2:+14922733 | None:intergenic |
| AGGTGTTTGATGAATGTTCA+AGG | 0.520295 | 6.2:-14923618 | MS.gene074206:CDS |
| TGATCGTTATGCTGAATTGA+GGG | 0.522928 | 6.2:-14923658 | MS.gene074206:CDS |
| AATAAGAAGAAAACGGTTGG+CGG | 0.524967 | 6.2:-14922622 | MS.gene074206:CDS |
| CCTAACCTCTTTCCTTGTTG+AGG | 0.526122 | 6.2:+14922969 | None:intergenic |
| GGAGCAAGTCAGAGAGTGCA+GGG | 0.537483 | 6.2:-14922651 | MS.gene074206:CDS |
| ATGCTGAATTGAGGGAAAAG+AGG | 0.541617 | 6.2:-14923650 | MS.gene074206:CDS |
| GATCTGGTTATGAGAGAAAA+GGG | 0.547344 | 6.2:-14923422 | MS.gene074206:CDS |
| GCTACTGCTACTGCCATCAA+TGG | 0.548475 | 6.2:-14922532 | MS.gene074206:CDS |
| TGCAACCAAAGCAAGAAAAG+AGG | 0.551288 | 6.2:-14922872 | MS.gene074206:CDS |
| GGATCAATGAAATTGGATCA+AGG | 0.555295 | 6.2:+14923775 | None:intergenic |
| AAGAAGAAAACGGTTGGCGG+CGG | 0.558964 | 6.2:-14922619 | MS.gene074206:CDS |
| GGAGAAGAATAAGAAGAAAA+CGG | 0.559986 | 6.2:-14922629 | MS.gene074206:CDS |
| ACTGCAGGCAAATAATTCAA+TGG | 0.561302 | 6.2:+14922748 | None:intergenic |
| AAAGAGGTTAAGTTTCAAGG+TGG | 0.561406 | 6.2:-14922856 | MS.gene074206:CDS |
| GTTGAGGCTACAAATTTCTG+TGG | 0.573758 | 6.2:+14922985 | None:intergenic |
| AAGAATAAGAAGAAAACGGT+TGG | 0.574511 | 6.2:-14922625 | MS.gene074206:CDS |
| TTATGGGAGAAAAGGATCAA+TGG | 0.580933 | 6.2:-14923034 | MS.gene074206:CDS |
| TAAGCCTTAGAGGACAAGGT+TGG | 0.592914 | 6.2:+14923724 | None:intergenic |
| GGAGTAAGCCTTAGAGGACA+AGG | 0.597214 | 6.2:+14923720 | None:intergenic |
| AAAGAGGTTAGGTTTCAAGG+TGG | 0.599875 | 6.2:-14922958 | MS.gene074206:CDS |
| GGAGTTATGTCAAATTCAAG+AGG | 0.600622 | 6.2:-14922673 | MS.gene074206:CDS |
| AGAAATTTGTAGCCTCAACA+AGG | 0.608034 | 6.2:-14922981 | MS.gene074206:CDS |
| AAAGAGGTTAACTTTCATGG+TGG | 0.633453 | 6.2:-14923063 | MS.gene074206:CDS |
| GGATCAAGGACATGAAGTAG+AGG | 0.638358 | 6.2:+14923789 | None:intergenic |
| GCCATCAATGGTGAAGCAAG+AGG | 0.644545 | 6.2:-14922520 | MS.gene074206:CDS |
| GAGCAAGTCAGAGAGTGCAG+GGG | 0.649394 | 6.2:-14922650 | MS.gene074206:CDS |
| ATCAATGGTGAAGCAAGAGG+AGG | 0.652726 | 6.2:-14922517 | MS.gene074206:CDS |
| GAGTTATGTCAAATTCAAGA+GGG | 0.683609 | 6.2:-14922672 | MS.gene074206:CDS |
| ATGGTGAAGCAAGAGGAGGA+AGG | 0.698421 | 6.2:-14922513 | MS.gene074206:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGAAAAAAGTTAATTTTCA+AGG | - | chr6.2:14923110-14923129 | MS.gene074206:CDS | 15.0% |
| !!! | TTGAATTTGAATTTGAATTT+TGG | + | chr6.2:14922536-14922555 | None:intergenic | 15.0% |
| !! | ATAACAAAACTATCTTCTAA+AGG | + | chr6.2:14922585-14922604 | None:intergenic | 20.0% |
| !!! | AAAAAAGTTAATTTTCAAGG+TGG | - | chr6.2:14923113-14923132 | MS.gene074206:CDS | 20.0% |
| !!! | AAAAGAAGAAGATTTTGATA+TGG | - | chr6.2:14923061-14923080 | MS.gene074206:CDS | 20.0% |
| !!! | AAAAGAAGAATTTTTTGAGA+TGG | - | chr6.2:14922956-14922975 | MS.gene074206:CDS | 20.0% |
| !!! | TTGAATTTGAATTTTGGTTA+AGG | + | chr6.2:14922530-14922549 | None:intergenic | 20.0% |
| !!! | TTTAGAAGATAGTTTTGTTA+TGG | - | chr6.2:14922584-14922603 | MS.gene074206:CDS | 20.0% |
| ! | AATGGAACAAGAAGAAAATT+TGG | - | chr6.2:14923265-14923284 | MS.gene074206:CDS | 25.0% |
| ! | AGGAAAAATGATAACTTTGA+AGG | - | chr6.2:14922834-14922853 | MS.gene074206:CDS | 25.0% |
| !! | AAAAATGATAACTTTGAAGG+TGG | - | chr6.2:14922837-14922856 | MS.gene074206:CDS | 25.0% |
| !! | TTCAAAAACTTGTTTCTTGT+GGG | - | chr6.2:14922916-14922935 | MS.gene074206:CDS | 25.0% |
| !! | TTTCAAAAACTTGTTTCTTG+TGG | - | chr6.2:14922915-14922934 | MS.gene074206:CDS | 25.0% |
| !!! | AAGTTATCATTTTTCCTTGA+AGG | + | chr6.2:14922831-14922850 | None:intergenic | 25.0% |
| !!! | AGTTATCATTTTTCCTTGAA+GGG | + | chr6.2:14922830-14922849 | None:intergenic | 25.0% |
| !!! | ATTAACTTTTTTCTTTGCTG+AGG | + | chr6.2:14923105-14923124 | None:intergenic | 25.0% |
| AAGAAAGAGGTTAAGTTTGA+AGG | - | chr6.2:14923005-14923024 | MS.gene074206:CDS | 30.0% | |
| AAGAATAAGAAGAAAACGGT+TGG | - | chr6.2:14923656-14923675 | MS.gene074206:CDS | 30.0% | |
| AGAAAAAGTTCTTCTGTTGT+TGG | - | chr6.2:14923461-14923480 | MS.gene074206:CDS | 30.0% | |
| AGAAAAGAGGTTAAGTTTCA+AGG | - | chr6.2:14923422-14923441 | MS.gene074206:CDS | 30.0% | |
| AGTAAAGAGGTTAACTTTCA+TGG | - | chr6.2:14923215-14923234 | MS.gene074206:CDS | 30.0% | |
| GAGTTATGTCAAATTCAAGA+GGG | - | chr6.2:14923609-14923628 | MS.gene074206:CDS | 30.0% | |
| GGAGAAGAATAAGAAGAAAA+CGG | - | chr6.2:14923652-14923671 | MS.gene074206:CDS | 30.0% | |
| GTTAAGTTTGAAGGTGATTT+GGG | - | chr6.2:14923014-14923033 | MS.gene074206:CDS | 30.0% | |
| TGGTTAAGGATCAATGAAAT+TGG | + | chr6.2:14922516-14922535 | None:intergenic | 30.0% | |
| ! | AGTTTTTCCAAGGATGATAA+TGG | - | chr6.2:14923587-14923606 | MS.gene074206:CDS | 30.0% |
| ! | GATTGAATCAGAGAAAGTTT+TGG | - | chr6.2:14922803-14922822 | MS.gene074206:CDS | 30.0% |
| ! | GTTAACCTCTTTACTTGTTT+TGG | + | chr6.2:14923210-14923229 | None:intergenic | 30.0% |
| !! | GTTATCATTTTTCCTTGAAG+GGG | + | chr6.2:14922829-14922848 | None:intergenic | 30.0% |
| !! | TTTGTTCTGGATGCAAATTT+TGG | + | chr6.2:14922987-14923006 | None:intergenic | 30.0% |
| AAAAAGTTGTTGACCCAGAA+AGG | - | chr6.2:14922709-14922728 | MS.gene074206:CDS | 35.0% | |
| AAAGAGGTTAACTTTCATGG+TGG | - | chr6.2:14923218-14923237 | MS.gene074206:CDS | 35.0% | |
| AAAGAGGTTAAGTTTCAAGG+TGG | - | chr6.2:14923425-14923444 | MS.gene074206:CDS | 35.0% | |
| AACTCAACCAAATTCCTTTC+TGG | + | chr6.2:14922726-14922745 | None:intergenic | 35.0% | |
| AATAAGAAGAAAACGGTTGG+CGG | - | chr6.2:14923659-14923678 | MS.gene074206:CDS | 35.0% | |
| ACTCAACCAAATTCCTTTCT+GGG | + | chr6.2:14922725-14922744 | None:intergenic | 35.0% | |
| ACTGCAGGCAAATAATTCAA+TGG | + | chr6.2:14923536-14923555 | None:intergenic | 35.0% | |
| AGAAATTTGTAGCCTCAACA+AGG | - | chr6.2:14923300-14923319 | MS.gene074206:CDS | 35.0% | |
| AGGTGTTTGATGAATGTTCA+AGG | - | chr6.2:14922663-14922682 | MS.gene074206:CDS | 35.0% | |
| ATCCTTGGAAAAACTACTCT+TGG | + | chr6.2:14923582-14923601 | None:intergenic | 35.0% | |
| ATGATCGTTATGCTGAATTG+AGG | - | chr6.2:14922622-14922641 | MS.gene074206:CDS | 35.0% | |
| CATAACTCCATTATCATCCT+TGG | + | chr6.2:14923597-14923616 | None:intergenic | 35.0% | |
| CTGTATTGAGGAAAGAGAAT+AGG | - | chr6.2:14923507-14923526 | MS.gene074206:CDS | 35.0% | |
| CTTAACCTCTTTCTTTGTTC+TGG | + | chr6.2:14923000-14923019 | None:intergenic | 35.0% | |
| GAAGTAGAGGTTCAAGAATT+GGG | + | chr6.2:14922482-14922501 | None:intergenic | 35.0% | |
| GATCTGGTTATGAGAGAAAA+GGG | - | chr6.2:14922859-14922878 | MS.gene074206:CDS | 35.0% | |
| GGAGTTATGTCAAATTCAAG+AGG | - | chr6.2:14923608-14923627 | MS.gene074206:CDS | 35.0% | |
| GGATCAATGAAATTGGATCA+AGG | + | chr6.2:14922509-14922528 | None:intergenic | 35.0% | |
| GGTTAAGTTTGAAGGTGATT+TGG | - | chr6.2:14923013-14923032 | MS.gene074206:CDS | 35.0% | |
| TGAAGTAGAGGTTCAAGAAT+TGG | + | chr6.2:14922483-14922502 | None:intergenic | 35.0% | |
| TGATCGTTATGCTGAATTGA+GGG | - | chr6.2:14922623-14922642 | MS.gene074206:CDS | 35.0% | |
| TGCAACCAAAACAAGTAAAG+AGG | - | chr6.2:14923202-14923221 | MS.gene074206:CDS | 35.0% | |
| TTATGAGAGAAAAGGGTCAT+TGG | - | chr6.2:14922866-14922885 | MS.gene074206:CDS | 35.0% | |
| TTATGGGAGAAAAGGATCAA+TGG | - | chr6.2:14923247-14923266 | MS.gene074206:CDS | 35.0% | |
| TTATGGGAGAAAAGGTTCTA+TGG | - | chr6.2:14923352-14923371 | MS.gene074206:CDS | 35.0% | |
| TTGGAAAAACTACTCTTGGA+AGG | + | chr6.2:14923578-14923597 | None:intergenic | 35.0% | |
| ! | ATTTGGGTTATGGGAGAAAA+GGG | - | chr6.2:14923030-14923049 | MS.gene074206:CDS | 35.0% |
| ! | ATTTGGGTTATGGGAGAAAT+GGG | - | chr6.2:14922754-14922773 | MS.gene074206:CDS | 35.0% |
| ! | CTTAACCTCTTTTCTTGCTT+TGG | + | chr6.2:14923417-14923436 | None:intergenic | 35.0% |
| ! | GTTTTGCTTATGGGAGAAAA+GGG | - | chr6.2:14923135-14923154 | MS.gene074206:CDS | 35.0% |
| ! | TTCAAGGTGGATTTGGTTAT+GGG | - | chr6.2:14923336-14923355 | MS.gene074206:CDS | 35.0% |
| ! | TTCCAAGAGTAGTTTTTCCA+AGG | - | chr6.2:14923577-14923596 | MS.gene074206:CDS | 35.0% |
| ! | TTGAAGGTGATTTGGGTTAT+GGG | - | chr6.2:14923021-14923040 | MS.gene074206:CDS | 35.0% |
| ! | TTGTTTCTTGTGGGAGAAAT+GGG | - | chr6.2:14922925-14922944 | MS.gene074206:CDS | 35.0% |
| ! | TTTCAAGGTGGATTTGGTTA+TGG | - | chr6.2:14923335-14923354 | MS.gene074206:CDS | 35.0% |
| ! | TTTGAAGGTGATTTGGGTTA+TGG | - | chr6.2:14923020-14923039 | MS.gene074206:CDS | 35.0% |
| !! | TTCAAGGTGGTTTTGCTTAT+GGG | - | chr6.2:14923126-14923145 | MS.gene074206:CDS | 35.0% |
| !! | TTCATGGTGGATTTGCTTAT+GGG | - | chr6.2:14923231-14923250 | MS.gene074206:CDS | 35.0% |
| !! | TTTCAAGGTGGTTTTGCTTA+TGG | - | chr6.2:14923125-14923144 | MS.gene074206:CDS | 35.0% |
| !! | TTTCATGGTGGATTTGCTTA+TGG | - | chr6.2:14923230-14923249 | MS.gene074206:CDS | 35.0% |
| !!! | GATAGTTTTGTTATGGAGAG+AGG | - | chr6.2:14922591-14922610 | MS.gene074206:CDS | 35.0% |
| AAAGAGGTTAGGTTTCAAGG+TGG | - | chr6.2:14923323-14923342 | MS.gene074206:CDS | 40.0% | |
| AGGAAAGAGGTTAGGTTTCA+AGG | - | chr6.2:14923320-14923339 | MS.gene074206:CDS | 40.0% | |
| AGGAATTTGGTTGAGTTCGA+TGG | - | chr6.2:14922729-14922748 | MS.gene074206:CDS | 40.0% | |
| ATGCTGAATTGAGGGAAAAG+AGG | - | chr6.2:14922631-14922650 | MS.gene074206:CDS | 40.0% | |
| CTCAATACAGCAGAGAAATC+AGG | + | chr6.2:14923497-14923516 | None:intergenic | 40.0% | |
| CTGATTTCTCTGCTGTATTG+AGG | - | chr6.2:14923495-14923514 | MS.gene074206:CDS | 40.0% | |
| GAAAAACTACTCTTGGAAGG+TGG | + | chr6.2:14923575-14923594 | None:intergenic | 40.0% | |
| GAATTATTTGCCTGCAGTGA+TGG | - | chr6.2:14923538-14923557 | MS.gene074206:CDS | 40.0% | |
| GGATCTGGTTATGAGAGAAA+AGG | - | chr6.2:14922858-14922877 | MS.gene074206:CDS | 40.0% | |
| GGTTAAGTTTCAAGGTGGAT+TGG | - | chr6.2:14923430-14923449 | MS.gene074206:CDS | 40.0% | |
| GTTGAGGCTACAAATTTCTG+TGG | + | chr6.2:14923299-14923318 | None:intergenic | 40.0% | |
| GTTGAGTTCGATGGTGATTT+GGG | - | chr6.2:14922738-14922757 | MS.gene074206:CDS | 40.0% | |
| TCTAAAGGAGTAAGCCTTAG+AGG | + | chr6.2:14922570-14922589 | None:intergenic | 40.0% | |
| TGCAACCAAAGCAAGAAAAG+AGG | - | chr6.2:14923409-14923428 | MS.gene074206:CDS | 40.0% | |
| TGCATCCAGAACAAAGAAAG+AGG | - | chr6.2:14922992-14923011 | MS.gene074206:CDS | 40.0% | |
| TGTTGACCCAGAAAGGAATT+TGG | - | chr6.2:14922716-14922735 | MS.gene074206:CDS | 40.0% | |
| TTATGGGAGAAAAGGGTCAT+TGG | - | chr6.2:14923037-14923056 | MS.gene074206:CDS | 40.0% | |
| TTATGGGAGAAAAGGGTTGT+TGG | - | chr6.2:14923142-14923161 | MS.gene074206:CDS | 40.0% | |
| ! | ATGCTTGCATTGATGAGCTT+AGG | - | chr6.2:14923714-14923733 | MS.gene074206:CDS | 40.0% |
| ! | CTTGTTTCTTGTGGGAGAAA+TGG | - | chr6.2:14922924-14922943 | MS.gene074206:CDS | 40.0% |
| ! | GATAACTTTGAAGGTGGATC+TGG | - | chr6.2:14922843-14922862 | MS.gene074206:CDS | 40.0% |
| ! | GATTTGGGTTATGGGAGAAA+AGG | - | chr6.2:14922753-14922772 | MS.gene074206:CDS | 40.0% |
| ! | GATTTGGGTTATGGGAGAAA+TGG | - | chr6.2:14922753-14922772 | MS.gene074206:CDS | 40.0% |
| ! | GCTTTGGTTGCAAGTTTTTG+TGG | + | chr6.2:14923401-14923420 | None:intergenic | 40.0% |
| ! | GGATTTGCTTATGGGAGAAA+AGG | - | chr6.2:14923239-14923258 | MS.gene074206:CDS | 40.0% |
| ! | GGATTTGGTTATGGGAGAAA+AGG | - | chr6.2:14923344-14923363 | MS.gene074206:CDS | 40.0% |
| ! | GGTTTTGCTTATGGGAGAAA+AGG | - | chr6.2:14923134-14923153 | MS.gene074206:CDS | 40.0% |
| ! | GTTAGGTTTCAAGGTGGATT+TGG | - | chr6.2:14923329-14923348 | MS.gene074206:CDS | 40.0% |
| ! | TCGATGGTGATTTGGGTTAT+GGG | - | chr6.2:14922745-14922764 | MS.gene074206:CDS | 40.0% |
| ! | TTCGATGGTGATTTGGGTTA+TGG | - | chr6.2:14922744-14922763 | MS.gene074206:CDS | 40.0% |
| !! | GTTCTGGATGCAAATTTTGG+TGG | + | chr6.2:14922984-14923003 | None:intergenic | 40.0% |
| !! | GTTTTGTTATGGAGAGAGGA+AGG | - | chr6.2:14922595-14922614 | MS.gene074206:CDS | 40.0% |
| !! | TTCAAGGTGGATTGGTTAGT+GGG | - | chr6.2:14923438-14923457 | MS.gene074206:CDS | 40.0% |
| !! | TTTCAAGGTGGATTGGTTAG+TGG | - | chr6.2:14923437-14923456 | MS.gene074206:CDS | 40.0% |
| ATCAATGGTGAAGCAAGAGG+AGG | - | chr6.2:14923764-14923783 | MS.gene074206:CDS | 45.0% | |
| CAAACCAACCTTGTCCTCTA+AGG | - | chr6.2:14922553-14922572 | MS.gene074206:CDS | 45.0% | |
| CCTAACCTCTTTCCTTGTTG+AGG | + | chr6.2:14923315-14923334 | None:intergenic | 45.0% | |
| CCTCAACAAGGAAAGAGGTT+AGG | - | chr6.2:14923312-14923331 | MS.gene074206:CDS | 45.0% | |
| GGATCAAGGACATGAAGTAG+AGG | + | chr6.2:14922495-14922514 | None:intergenic | 45.0% | |
| GGGAAAAGAGGTTGCAGTTA+AGG | - | chr6.2:14922643-14922662 | MS.gene074206:CDS | 45.0% | |
| GGTTGAGTTCGATGGTGATT+TGG | - | chr6.2:14922737-14922756 | MS.gene074206:CDS | 45.0% | |
| GTCATTATCTCCATCACTGC+AGG | + | chr6.2:14923551-14923570 | None:intergenic | 45.0% | |
| TAAGCCTTAGAGGACAAGGT+TGG | + | chr6.2:14922560-14922579 | None:intergenic | 45.0% | |
| TCCTCTTGCTTCACCATTGA+TGG | + | chr6.2:14923765-14923784 | None:intergenic | 45.0% | |
| TGTAGCCTCAACAAGGAAAG+AGG | - | chr6.2:14923307-14923326 | MS.gene074206:CDS | 45.0% | |
| TTGTGGGAGAAATGGGTCTT+TGG | - | chr6.2:14922932-14922951 | MS.gene074206:CDS | 45.0% | |
| !! | AGAAAGTTTTGGCCCCTTCA+AGG | - | chr6.2:14922814-14922833 | MS.gene074206:CDS | 45.0% |
| AAGAAGAAAACGGTTGGCGG+CGG | - | chr6.2:14923662-14923681 | MS.gene074206:CDS | 50.0% | |
| ATGGTGAAGCAAGAGGAGGA+AGG | - | chr6.2:14923768-14923787 | MS.gene074206:CDS | 50.0% | |
| GCCATCAATGGTGAAGCAAG+AGG | - | chr6.2:14923761-14923780 | MS.gene074206:CDS | 50.0% | |
| GCTACTGCTACTGCCATCAA+TGG | - | chr6.2:14923749-14923768 | MS.gene074206:CDS | 50.0% | |
| GGAGTAAGCCTTAGAGGACA+AGG | + | chr6.2:14922564-14922583 | None:intergenic | 50.0% | |
| ! | GAGCAAGTCAGAGAGTGCAG+GGG | - | chr6.2:14923631-14923650 | MS.gene074206:CDS | 55.0% |
| ! | GGAGCAAGTCAGAGAGTGCA+GGG | - | chr6.2:14923630-14923649 | MS.gene074206:CDS | 55.0% |
| !!! | GTGGCGGTGTTTTGATGGGA+AGG | - | chr6.2:14923684-14923703 | MS.gene074206:CDS | 55.0% |
| AAGAAAACGGTTGGCGGCGG+TGG | - | chr6.2:14923665-14923684 | MS.gene074206:CDS | 60.0% | |
| ! | GGGAGCAAGTCAGAGAGTGC+AGG | - | chr6.2:14923629-14923648 | MS.gene074206:CDS | 60.0% |
| !!! | GGCGGTGGCGGTGTTTTGAT+GGG | - | chr6.2:14923680-14923699 | MS.gene074206:CDS | 60.0% |
| AAAACGGTTGGCGGCGGTGG+CGG | - | chr6.2:14923668-14923687 | MS.gene074206:CDS | 65.0% | |
| !! | CGGCGGTGGCGGTGTTTTGA+TGG | - | chr6.2:14923679-14923698 | MS.gene074206:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.2 | gene | 14922465 | 14923838 | 14922465 | ID=MS.gene074206 |
| chr6.2 | mRNA | 14922465 | 14923838 | 14922465 | ID=MS.gene074206.t1;Parent=MS.gene074206 |
| chr6.2 | exon | 14922465 | 14923838 | 14922465 | ID=MS.gene074206.t1.exon1;Parent=MS.gene074206.t1 |
| chr6.2 | CDS | 14922465 | 14923838 | 14922465 | ID=cds.MS.gene074206.t1;Parent=MS.gene074206.t1 |
| Gene Sequence |
| Protein sequence |
