AlfalfaGEDB | MS.gene074206

M. sativa cultivar XinJiangDaYe / MS.gene074206

KEGG: -
GO: -
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene074206.t1	XP_013451320.1	90.8	457	39	2	1	457	1	454	7.60E-60	241.5

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene074206.t1	A0A072UHW8	90.8	457	39	2	1	457	1	454	5.5e-60	241.5

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene074206	0.809527	1.81E-50	-1.69E-46
MS.gene049711	MS.gene074206	0.816205	6.23E-52	-1.69E-46
MS.gene049821	MS.gene074206	0.806246	9.03E-50	-1.69E-46
MS.gene049850	MS.gene074206	0.820721	5.91E-53	-1.69E-46
MS.gene050657	MS.gene074206	0.816129	6.49E-52	-1.69E-46
MS.gene050901	MS.gene074206	0.810632	1.05E-50	-1.69E-46
MS.gene051021	MS.gene074206	0.807157	5.80E-50	-1.69E-46
MS.gene051247	MS.gene074206	0.816168	6.36E-52	-1.69E-46
MS.gene051279	MS.gene074206	0.816714	4.79E-52	-1.69E-46
MS.gene05157	MS.gene074206	0.823365	1.44E-53	-1.69E-46

Showing 1 to 10 of 53 entries

Previous1 2 3 4 5 6Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene074206.t1	MTR_6g018780	92.560	457	31	2	1	457	1	454	0.0	845
MS.gene074206.t1	MTR_7g082230	53.191	141	54	5	314	450	45	177	1.07e-31	120

Showing 1 to 2 of 2 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene074206.t1	AT5G38300	49.505	101	39	4	337	435	144	234	6.19e-16	78.2
MS.gene074206.t1	AT1G67035	47.059	102	36	5	339	435	107	195	4.51e-14	72.0

Showing 1 to 2 of 2 entries

Previous1Next

Find 97 sgRNAs with CRISPR-Local

Find 131 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGGTTGGCGGCGGTGG+CGG	0.448986	6.2:-14922613	MS.gene074206:CDS
AAAGAGGTTAACTTTCATGG+TGG	0.633453	6.2:-14923063	MS.gene074206:CDS
AAAGAGGTTAAGTTTCAAGG+TGG	0.561406	6.2:-14922856	MS.gene074206:CDS
AAAGAGGTTAGGTTTCAAGG+TGG	0.599875	6.2:-14922958	MS.gene074206:CDS
AACTCAACCAAATTCCTTTC+TGG	0.129782	6.2:+14923558	None:intergenic
AAGAAAACGGTTGGCGGCGG+TGG	0.428638	6.2:-14922616	MS.gene074206:CDS
AAGAAAGAGGTTAAGTTTGA+AGG	0.396584	6.2:-14923276	MS.gene074206:CDS
AAGAAGAAAACGGTTGGCGG+CGG	0.558964	6.2:-14922619	MS.gene074206:CDS
AAGAATAAGAAGAAAACGGT+TGG	0.574511	6.2:-14922625	MS.gene074206:CDS
AATAAGAAGAAAACGGTTGG+CGG	0.524967	6.2:-14922622	MS.gene074206:CDS

Showing 1 to 10 of 97 entries

Previous1 2 3 4 5…10Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAGAAAGAGGTTAAGTTTGA+AGG	-	chr6.2:14923005-14923024	MS.gene074206:CDS	30.0%
AAGAATAAGAAGAAAACGGT+TGG	-	chr6.2:14923656-14923675	MS.gene074206:CDS	30.0%
AGAAAAAGTTCTTCTGTTGT+TGG	-	chr6.2:14923461-14923480	MS.gene074206:CDS	30.0%
AGAAAAGAGGTTAAGTTTCA+AGG	-	chr6.2:14923422-14923441	MS.gene074206:CDS	30.0%
AGTAAAGAGGTTAACTTTCA+TGG	-	chr6.2:14923215-14923234	MS.gene074206:CDS	30.0%
GAGTTATGTCAAATTCAAGA+GGG	-	chr6.2:14923609-14923628	MS.gene074206:CDS	30.0%
GGAGAAGAATAAGAAGAAAA+CGG	-	chr6.2:14923652-14923671	MS.gene074206:CDS	30.0%
GTTAAGTTTGAAGGTGATTT+GGG	-	chr6.2:14923014-14923033	MS.gene074206:CDS	30.0%
TGGTTAAGGATCAATGAAAT+TGG	+	chr6.2:14922516-14922535	None:intergenic	30.0%
AAAAAGTTGTTGACCCAGAA+AGG	-	chr6.2:14922709-14922728	MS.gene074206:CDS	35.0%

Showing 1 to 10 of 131 entries

Previous1 2 3 4 5…14Next

Chromosome	Type	Strat	End	Strand	Name
chr6.2	gene	14922465	14923838	14922465	ID=MS.gene074206
chr6.2	mRNA	14922465	14923838	14922465	ID=MS.gene074206.t1;Parent=MS.gene074206
chr6.2	exon	14922465	14923838	14922465	ID=MS.gene074206.t1.exon1;Parent=MS.gene074206.t1
chr6.2	CDS	14922465	14923838	14922465	ID=cds.MS.gene074206.t1;Parent=MS.gene074206.t1

Gene Sequence

>MS.gene074206

ATGTCAAAAACAAACCCAATTCTTGAACCTCTACTTCATGTCCTTGATCCAATTTCATTGATCCTTAACCAAAATTCAAATTCAAATTCAAACCAACCTTGTCCTCTAAGGCTTACTCCTTTAGAAGATAGTTTTGTTATGGAGAGAGGAAGGAATTATGATCGTTATGCTGAATTGAGGGAAAAGAGGTTGCAGTTAAGGTGTTTGATGAATGTTCAAGGTGAGAGTTTTGAGATTGAAAGTGAAAAAGTTGTTGACCCAGAAAGGAATTTGGTTGAGTTCGATGGTGATTTGGGTTATGGGAGAAATGGGTTGTTGAAAAAAGATGAATTTTTTGAGATTGAATCAGAGAAAGTTTTGGCCCCTTCAAGGAAAAATGATAACTTTGAAGGTGGATCTGGTTATGAGAGAAAAGGGTCATTGGAAAATGATGAGAGTTTTGAGATTGAATTTCAAAAACTTGTTTCTTGTGGGAGAAATGGGTCTTTGGAAAAAGAAGAATTTTTTGAGATGGAACCACCAAAATTTGCATCCAGAACAAAGAAAGAGGTTAAGTTTGAAGGTGATTTGGGTTATGGGAGAAAAGGGTCATTGGAAAAAGAAGAAGATTTTGATATGGAACTGCAAAAACTTGTAGCCTCAGCAAAGAAAAAAGTTAATTTTCAAGGTGGTTTTGCTTATGGGAGAAAAGGGTTGTTGGAACAAGATGAATATTTTGAGATTGAATCACAAAAATTTGCAACCAAAACAAGTAAAGAGGTTAACTTTCATGGTGGATTTGCTTATGGGAGAAAAGGATCAATGGAACAAGAAGAAAATTTGGTAATTGAACCACAGAAATTTGTAGCCTCAACAAGGAAAGAGGTTAGGTTTCAAGGTGGATTTGGTTATGGGAGAAAAGGTTCTATGGAACAAGAATATTTTGAGATTGAACCACAAAAACTTGCAACCAAAGCAAGAAAAGAGGTTAAGTTTCAAGGTGGATTGGTTAGTGGGAGAAAAAGTTCTTCTGTTGTTGGTCAATCTGTACCTGATTTCTCTGCTGTATTGAGGAAAGAGAATAGGAAGCCATTGAATTATTTGCCTGCAGTGATGGAGATAATGACACCACCTTCCAAGAGTAGTTTTTCCAAGGATGATAATGGAGTTATGTCAAATTCAAGAGGGAGCAAGTCAGAGAGTGCAGGGGAGAAGAATAAGAAGAAAACGGTTGGCGGCGGTGGCGGTGTTTTGATGGGAAGGAAGAGTTATGCTTGCATTGATGAGCTTAGGAGTTTGTCTTCTGCTACTGCTACTGCCATCAATGGTGAAGCAAGAGGAGGAAGGAATAGTAGAGTTTTGAGAAAGTCAGTATCAGCACATAGACAGTTTTGA

Protein sequence

>MS.gene074206.t1

MSKTNPILEPLLHVLDPISLILNQNSNSNSNQPCPLRLTPLEDSFVMERGRNYDRYAELREKRLQLRCLMNVQGESFEIESEKVVDPERNLVEFDGDLGYGRNGLLKKDEFFEIESEKVLAPSRKNDNFEGGSGYERKGSLENDESFEIEFQKLVSCGRNGSLEKEEFFEMEPPKFASRTKKEVKFEGDLGYGRKGSLEKEEDFDMELQKLVASAKKKVNFQGGFAYGRKGLLEQDEYFEIESQKFATKTSKEVNFHGGFAYGRKGSMEQEENLVIEPQKFVASTRKEVRFQGGFGYGRKGSMEQEYFEIEPQKLATKARKEVKFQGGLVSGRKSSSVVGQSVPDFSAVLRKENRKPLNYLPAVMEIMTPPSKSSFSKDDNGVMSNSRGSKSESAGEKNKKKTVGGGGGVLMGRKSYACIDELRSLSSATATAINGEARGGRNSRVLRKSVSAHRQF