Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08208.t1 | XP_013449497.1 | 94.2 | 223 | 13 | 0 | 3 | 225 | 81 | 303 | 1.80E-110 | 408.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08208.t1 | Q8CXD3 | 59.5 | 42 | 14 | 1 | 3 | 44 | 32 | 70 | 2.7e-06 | 53.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08208.t1 | A0A072UCE8 | 94.2 | 223 | 13 | 0 | 3 | 225 | 81 | 303 | 1.3e-110 | 408.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050315 | MS.gene08208 | 0.820434 | 6.87E-53 | -1.69E-46 |
| MS.gene050426 | MS.gene08208 | -0.819097 | 1.39E-52 | -1.69E-46 |
| MS.gene050625 | MS.gene08208 | 0.802425 | 5.64E-49 | -1.69E-46 |
| MS.gene050670 | MS.gene08208 | 0.822363 | 2.47E-53 | -1.69E-46 |
| MS.gene05105 | MS.gene08208 | 0.801008 | 1.10E-48 | -1.69E-46 |
| MS.gene051525 | MS.gene08208 | 0.83642 | 9.46E-57 | -1.69E-46 |
| MS.gene051582 | MS.gene08208 | 0.804321 | 2.29E-49 | -1.69E-46 |
| MS.gene051588 | MS.gene08208 | 0.801299 | 9.61E-49 | -1.69E-46 |
| MS.gene052011 | MS.gene08208 | -0.840254 | 9.71E-58 | -1.69E-46 |
| MS.gene052134 | MS.gene08208 | 0.821828 | 3.28E-53 | -1.69E-46 |
| MS.gene052135 | MS.gene08208 | 0.827075 | 1.91E-54 | -1.69E-46 |
| MS.gene052253 | MS.gene08208 | 0.847058 | 1.47E-59 | -1.69E-46 |
| MS.gene052414 | MS.gene08208 | 0.83249 | 9.18E-56 | -1.69E-46 |
| MS.gene052982 | MS.gene08208 | 0.839924 | 1.18E-57 | -1.69E-46 |
| MS.gene053330 | MS.gene08208 | 0.821493 | 3.92E-53 | -1.69E-46 |
| MS.gene054102 | MS.gene08208 | 0.845064 | 5.13E-59 | -1.69E-46 |
| MS.gene054183 | MS.gene08208 | 0.829122 | 6.14E-55 | -1.69E-46 |
| MS.gene054556 | MS.gene08208 | 0.805763 | 1.14E-49 | -1.69E-46 |
| MS.gene054719 | MS.gene08208 | 0.820002 | 8.63E-53 | -1.69E-46 |
| MS.gene054917 | MS.gene08208 | 0.843361 | 1.47E-58 | -1.69E-46 |
| MS.gene054918 | MS.gene08208 | 0.813475 | 2.51E-51 | -1.69E-46 |
| MS.gene054920 | MS.gene08208 | 0.816367 | 5.73E-52 | -1.69E-46 |
| MS.gene055116 | MS.gene08208 | 0.825204 | 5.33E-54 | -1.69E-46 |
| MS.gene055369 | MS.gene08208 | 0.825168 | 5.43E-54 | -1.69E-46 |
| MS.gene055539 | MS.gene08208 | 0.829148 | 6.05E-55 | -1.69E-46 |
| MS.gene05553 | MS.gene08208 | 0.800561 | 1.36E-48 | -1.69E-46 |
| MS.gene055741 | MS.gene08208 | 0.803693 | 3.09E-49 | -1.69E-46 |
| MS.gene055744 | MS.gene08208 | 0.814568 | 1.44E-51 | -1.69E-46 |
| MS.gene05594 | MS.gene08208 | 0.800518 | 1.39E-48 | -1.69E-46 |
| MS.gene056514 | MS.gene08208 | 0.814053 | 1.87E-51 | -1.69E-46 |
| MS.gene056659 | MS.gene08208 | 0.808921 | 2.44E-50 | -1.69E-46 |
| MS.gene056723 | MS.gene08208 | 0.810621 | 1.05E-50 | -1.69E-46 |
| MS.gene057124 | MS.gene08208 | 0.821591 | 3.72E-53 | -1.69E-46 |
| MS.gene057749 | MS.gene08208 | 0.812417 | 4.29E-51 | -1.69E-46 |
| MS.gene057823 | MS.gene08208 | 0.804751 | 1.86E-49 | -1.69E-46 |
| MS.gene057825 | MS.gene08208 | 0.824368 | 8.38E-54 | -1.69E-46 |
| MS.gene058142 | MS.gene08208 | 0.817072 | 3.99E-52 | -1.69E-46 |
| MS.gene058444 | MS.gene08208 | 0.803894 | 2.80E-49 | -1.69E-46 |
| MS.gene058700 | MS.gene08208 | 0.80783 | 4.17E-50 | -1.69E-46 |
| MS.gene05886 | MS.gene08208 | 0.823539 | 1.31E-53 | -1.69E-46 |
| MS.gene059011 | MS.gene08208 | 0.829004 | 6.56E-55 | -1.69E-46 |
| MS.gene059247 | MS.gene08208 | 0.810337 | 1.21E-50 | -1.69E-46 |
| MS.gene059420 | MS.gene08208 | 0.834438 | 3.00E-56 | -1.69E-46 |
| MS.gene061154 | MS.gene08208 | 0.813438 | 2.56E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08208.t1 | MTR_7g085600 | 94.170 | 223 | 13 | 0 | 3 | 225 | 81 | 303 | 1.75e-158 | 441 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08208.t1 | AT5G18140 | 54.148 | 229 | 96 | 5 | 3 | 223 | 104 | 331 | 7.46e-75 | 229 |
Find 52 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGTGTGGTTGCACTATTTA+TGG | 0.208759 | 7.3:-23007984 | MS.gene08208:CDS |
| AGAGGCATGGTCTTTATATT+TGG | 0.242299 | 7.3:+23007864 | None:intergenic |
| TTATGTAATAGCATGGATTT+TGG | 0.245621 | 7.3:-23008077 | MS.gene08208:CDS |
| CTGAACTCTTGTTGTTTCAT+TGG | 0.280900 | 7.3:+23008450 | None:intergenic |
| TTGGTCAGATTGCAGCTTAA+TGG | 0.284327 | 7.3:+23007883 | None:intergenic |
| AAATGCGTCGTGAAAGATAC+TGG | 0.307636 | 7.3:-23008318 | MS.gene08208:CDS |
| AACAGAGCACCTTGGGGAAT+TGG | 0.318144 | 7.3:+23007923 | None:intergenic |
| TCTTACCTCATCTTCAAATT+CGG | 0.359902 | 7.3:+23008369 | None:intergenic |
| AAGAGTTAACAGAGCACCTT+GGG | 0.387757 | 7.3:+23007916 | None:intergenic |
| GATCTTGTCGTTTGCAAGTT+GGG | 0.391179 | 7.3:-23008026 | MS.gene08208:CDS |
| CGCTAAATGTAAGGGAGAGC+TGG | 0.394328 | 7.3:+23008149 | None:intergenic |
| TTAGATGTTGGCTATAAAGT+TGG | 0.395194 | 7.3:-23008100 | MS.gene08208:CDS |
| GTCTGACAGCATTGTTTGAT+AGG | 0.403060 | 7.3:-23008126 | MS.gene08208:CDS |
| CTGTCAGACCGCTAAATGTA+AGG | 0.420848 | 7.3:+23008140 | None:intergenic |
| CAGCTCTCCCTTACATTTAG+CGG | 0.434302 | 7.3:-23008148 | MS.gene08208:CDS |
| CGTTTGCAAGTTGGGTTTGT+GGG | 0.438261 | 7.3:-23008018 | MS.gene08208:CDS |
| GAATTGGTGCATAGCTAGAA+AGG | 0.464524 | 7.3:+23007939 | None:intergenic |
| AGAGCTGGGATCCTAACGTT+TGG | 0.467322 | 7.3:+23008164 | None:intergenic |
| CAACAAGAGTTCAGTATGAT+CGG | 0.473904 | 7.3:-23008441 | MS.gene08208:CDS |
| CTATTATTATTCCAAACGTT+AGG | 0.477258 | 7.3:-23008175 | MS.gene08208:CDS |
| TGATCTTGTCGTTTGCAAGT+TGG | 0.479851 | 7.3:-23008027 | MS.gene08208:CDS |
| ACAGATGAGAAGGAGGATGA+AGG | 0.485837 | 7.3:-23008256 | MS.gene08208:CDS |
| TCTAAATCCTTGCTAACATC+AGG | 0.486199 | 7.3:+23008941 | None:intergenic |
| TTTGATAGGAAATTAGATGT+TGG | 0.488383 | 7.3:-23008112 | MS.gene08208:CDS |
| CACTATTTATGGTAGCCATG+TGG | 0.496148 | 7.3:-23007973 | MS.gene08208:CDS |
| AAGATGAGGTAAGAAGATAT+AGG | 0.498568 | 7.3:-23008360 | MS.gene08208:CDS |
| TAGTGCAACCACACTACTAC+TGG | 0.513219 | 7.3:+23007991 | None:intergenic |
| AACAAGAGTTCAGTATGATC+GGG | 0.528911 | 7.3:-23008440 | MS.gene08208:CDS |
| ACTATTTATGGTAGCCATGT+GGG | 0.536513 | 7.3:-23007972 | MS.gene08208:CDS |
| AAGTTGGTTATGTAATAGCA+TGG | 0.537098 | 7.3:-23008084 | MS.gene08208:CDS |
| ATGAGGTAAGAAGATATAGG+TGG | 0.544512 | 7.3:-23008357 | MS.gene08208:CDS |
| TCGTTTGCAAGTTGGGTTTG+TGG | 0.544871 | 7.3:-23008019 | MS.gene08208:CDS |
| TAAGAGTTAACAGAGCACCT+TGG | 0.566651 | 7.3:+23007915 | None:intergenic |
| TGAGGTAAGAAGATATAGGT+GGG | 0.567585 | 7.3:-23008356 | MS.gene08208:CDS |
| TTTATGGTAGCCATGTGGGT+TGG | 0.568127 | 7.3:-23007968 | MS.gene08208:CDS |
| GCTAAATGTAAGGGAGAGCT+GGG | 0.573562 | 7.3:+23008150 | None:intergenic |
| CAACAGTGAAACAGATGAGA+AGG | 0.577327 | 7.3:-23008266 | MS.gene08208:CDS |
| CAACACCGAATTTGAAGATG+AGG | 0.577423 | 7.3:-23008374 | MS.gene08208:CDS |
| ACTGTTGTAGTAATCCTCGT+TGG | 0.598072 | 7.3:+23008282 | None:intergenic |
| GTATCATCCTGATGTTAGCA+AGG | 0.612202 | 7.3:-23008948 | MS.gene08208:CDS |
| AATTGGTGCATAGCTAGAAA+GGG | 0.613598 | 7.3:+23007940 | None:intergenic |
| CAGTGAAACAGATGAGAAGG+AGG | 0.614143 | 7.3:-23008263 | MS.gene08208:CDS |
| GGTTGCTCACTTCATAAGCA+TGG | 0.626473 | 7.3:+23008891 | None:intergenic |
| TGTCAGACCGCTAAATGTAA+GGG | 0.629536 | 7.3:+23008141 | None:intergenic |
| GATATAGGTGGGCTTACATG+AGG | 0.631143 | 7.3:-23008345 | MS.gene08208:CDS |
| AAGGGATGAGCCAACCCACA+TGG | 0.645849 | 7.3:+23007958 | None:intergenic |
| AATGCGTCGTGAAAGATACT+GGG | 0.654807 | 7.3:-23008317 | MS.gene08208:CDS |
| AGCTATGCACCAATTCCCCA+AGG | 0.655323 | 7.3:-23007932 | MS.gene08208:CDS |
| TGGGAAAACCAGTAGTAGTG+TGG | 0.704395 | 7.3:-23007999 | MS.gene08208:CDS |
| TGCTCACTTCATAAGCATGG+CGG | 0.714270 | 7.3:+23008894 | None:intergenic |
| GGAACATTACAATGCCAACG+AGG | 0.761003 | 7.3:-23008296 | MS.gene08208:CDS |
| AGAGTTAACAGAGCACCTTG+GGG | 0.786394 | 7.3:+23007917 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGAATTTAATTTATGTAATT+TGG | - | chr7.3:23007943-23007962 | MS.gene08208:CDS | 10.0% |
| !! | AAATGATAATAACACAATAA+TGG | + | chr7.3:23008020-23008039 | None:intergenic | 15.0% |
| !! | GTCTTGAAATATATATTATA+GGG | + | chr7.3:23008303-23008322 | None:intergenic | 15.0% |
| !! | TCTTGAAATATATATTATAG+GGG | + | chr7.3:23008302-23008321 | None:intergenic | 15.0% |
| !!! | ACATAAATTAAATTCTAAAG+TGG | + | chr7.3:23007939-23007958 | None:intergenic | 15.0% |
| !! | AATATATTCTTGGTAGAAAA+AGG | + | chr7.3:23008752-23008771 | None:intergenic | 20.0% |
| !! | ATAATATATATTTCAAGACG+AGG | - | chr7.3:23008304-23008323 | MS.gene08208:CDS | 20.0% |
| !! | ATGAAAATTCAAAGAGAAAA+AGG | + | chr7.3:23008254-23008273 | None:intergenic | 20.0% |
| !! | CGTCTTGAAATATATATTAT+AGG | + | chr7.3:23008304-23008323 | None:intergenic | 20.0% |
| !! | CTTGAAATATATATTATAGG+GGG | + | chr7.3:23008301-23008320 | None:intergenic | 20.0% |
| !! | TAATATATATTTCAAGACGA+GGG | - | chr7.3:23008305-23008324 | MS.gene08208:CDS | 20.0% |
| !! | TGAAAATTCAAAGAGAAAAA+GGG | + | chr7.3:23008253-23008272 | None:intergenic | 20.0% |
| !!! | AAAAGTTTTAGATTCTTTTG+TGG | - | chr7.3:23008588-23008607 | MS.gene08208:intron | 20.0% |
| !!! | GATTTAATTTCATCTTTCTA+GGG | - | chr7.3:23008559-23008578 | MS.gene08208:intron | 20.0% |
| !!! | TCTTGATAACAATATATTCT+TGG | + | chr7.3:23008762-23008781 | None:intergenic | 20.0% |
| ! | AAAACTGCAAAATAACAGTA+AGG | + | chr7.3:23008617-23008636 | None:intergenic | 25.0% |
| ! | AAGCAAGAAAAGTTGAATAA+CGG | + | chr7.3:23008503-23008522 | None:intergenic | 25.0% |
| ! | ATTATTCAAATGTCAACGAT+AGG | + | chr7.3:23008660-23008679 | None:intergenic | 25.0% |
| ! | CAAAAATACATATGCTCTAA+AGG | + | chr7.3:23008853-23008872 | None:intergenic | 25.0% |
| ! | CTATTATTATTCCAAACGTT+AGG | - | chr7.3:23009195-23009214 | MS.gene08208:intron | 25.0% |
| ! | TGTCAATATCATCATATGAT+TGG | + | chr7.3:23008138-23008157 | None:intergenic | 25.0% |
| ! | TTAATGAATATGCATCGTAA+GGG | - | chr7.3:23008091-23008110 | MS.gene08208:CDS | 25.0% |
| ! | TTTAATGAATATGCATCGTA+AGG | - | chr7.3:23008090-23008109 | MS.gene08208:CDS | 25.0% |
| ! | TTTGATAGGAAATTAGATGT+TGG | - | chr7.3:23009258-23009277 | MS.gene08208:intron | 25.0% |
| !! | ATTCAACTTTTCTTGCTTTA+TGG | - | chr7.3:23008505-23008524 | MS.gene08208:intron | 25.0% |
| !! | GGATTTAATTTCATCTTTCT+AGG | - | chr7.3:23008558-23008577 | MS.gene08208:intron | 25.0% |
| !! | TATGTAATAGCATGGATTTT+GGG | - | chr7.3:23009294-23009313 | MS.gene08208:intron | 25.0% |
| !! | TTATGTAATAGCATGGATTT+TGG | - | chr7.3:23009293-23009312 | MS.gene08208:intron | 25.0% |
| !! | TTTTAATGCAGTAGAAATTC+TGG | + | chr7.3:23008812-23008831 | None:intergenic | 25.0% |
| !!! | CAATATAACTAGTTTTACAC+TGG | + | chr7.3:23008219-23008238 | None:intergenic | 25.0% |
| !!! | GTATTTTTATATCCTCAAAC+AGG | - | chr7.3:23008891-23008910 | MS.gene08208:intron | 25.0% |
| !!! | TATGTAATTTGGCTTCTTTT+TGG | - | chr7.3:23007954-23007973 | MS.gene08208:CDS | 25.0% |
| AAGATGAGGTAAGAAGATAT+AGG | - | chr7.3:23009010-23009029 | MS.gene08208:intron | 30.0% | |
| ATCCAATAAGATCCATCATT+TGG | + | chr7.3:23008195-23008214 | None:intergenic | 30.0% | |
| CAAATAATTGTCTCGTAACA+TGG | - | chr7.3:23008537-23008556 | MS.gene08208:intron | 30.0% | |
| TCTTACCTCATCTTCAAATT+CGG | + | chr7.3:23009004-23009023 | None:intergenic | 30.0% | |
| ! | AAGTTGGTTATGTAATAGCA+TGG | - | chr7.3:23009286-23009305 | MS.gene08208:intron | 30.0% |
| ! | TTAGATGTTGGCTATAAAGT+TGG | - | chr7.3:23009270-23009289 | MS.gene08208:intron | 30.0% |
| !! | AATTCTGGAATTTCATGAGA+TGG | + | chr7.3:23008797-23008816 | None:intergenic | 30.0% |
| !! | TAACTCCATTTTTCTTGGTA+TGG | + | chr7.3:23008976-23008995 | None:intergenic | 30.0% |
| !! | TGTTGTAACTCCATTTTTCT+TGG | + | chr7.3:23008981-23009000 | None:intergenic | 30.0% |
| AACAAGAGTTCAGTATGATC+GGG | - | chr7.3:23008930-23008949 | MS.gene08208:CDS | 35.0% | |
| AATTGGTGCATAGCTAGAAA+GGG | + | chr7.3:23009433-23009452 | None:intergenic | 35.0% | |
| ACAAGCCATACCAAGAAAAA+TGG | - | chr7.3:23008968-23008987 | MS.gene08208:intron | 35.0% | |
| ACTATTTATGGTAGCCATGT+GGG | - | chr7.3:23009398-23009417 | MS.gene08208:intron | 35.0% | |
| ATGAGGTAAGAAGATATAGG+TGG | - | chr7.3:23009013-23009032 | MS.gene08208:intron | 35.0% | |
| CAACAAGAGTTCAGTATGAT+CGG | - | chr7.3:23008929-23008948 | MS.gene08208:CDS | 35.0% | |
| GTGTATGTTGCAAGAATGTT+GGG | + | chr7.3:23008056-23008075 | None:intergenic | 35.0% | |
| TAAAGATAAGCGCCAAATGA+TGG | - | chr7.3:23008180-23008199 | MS.gene08208:CDS | 35.0% | |
| TAGTGTGGTTGCACTATTTA+TGG | - | chr7.3:23009386-23009405 | MS.gene08208:intron | 35.0% | |
| TCTAAATCCTTGCTAACATC+AGG | + | chr7.3:23008432-23008451 | None:intergenic | 35.0% | |
| TGAGGTAAGAAGATATAGGT+GGG | - | chr7.3:23009014-23009033 | MS.gene08208:intron | 35.0% | |
| TGGCGCTTATCTTTAAATTG+TGG | + | chr7.3:23008175-23008194 | None:intergenic | 35.0% | |
| TGTGTATGTTGCAAGAATGT+TGG | + | chr7.3:23008057-23008076 | None:intergenic | 35.0% | |
| ! | AATTTGAAATCCGATGCAGA+TGG | + | chr7.3:23008699-23008718 | None:intergenic | 35.0% |
| !! | AGTCGTGAGCTTTTTGTTTA+GGG | + | chr7.3:23008382-23008401 | None:intergenic | 35.0% |
| !! | ATTCTAAAGTGGATCAGTCT+AGG | + | chr7.3:23007928-23007947 | None:intergenic | 35.0% |
| !! | CTGAACTCTTGTTGTTTCAT+TGG | + | chr7.3:23008923-23008942 | None:intergenic | 35.0% |
| !! | TAATAGCATGGATTTTGGGT+GGG | - | chr7.3:23009298-23009317 | MS.gene08208:intron | 35.0% |
| !! | TAGTCGTGAGCTTTTTGTTT+AGG | + | chr7.3:23008383-23008402 | None:intergenic | 35.0% |
| !! | TTCTAAAGTGGATCAGTCTA+GGG | + | chr7.3:23007927-23007946 | None:intergenic | 35.0% |
| !!! | CTGTTATTTTGCAGTTTTGC+TGG | - | chr7.3:23008619-23008638 | MS.gene08208:intron | 35.0% |
| !!! | TTTTGTTTTGCCATCTGCAT+CGG | - | chr7.3:23008686-23008705 | MS.gene08208:intron | 35.0% |
| AAATGCGTCGTGAAAGATAC+TGG | - | chr7.3:23009052-23009071 | MS.gene08208:intron | 40.0% | |
| AATGCGTCGTGAAAGATACT+GGG | - | chr7.3:23009053-23009072 | MS.gene08208:intron | 40.0% | |
| ACTGTTGTAGTAATCCTCGT+TGG | + | chr7.3:23009091-23009110 | None:intergenic | 40.0% | |
| CAACACCGAATTTGAAGATG+AGG | - | chr7.3:23008996-23009015 | MS.gene08208:intron | 40.0% | |
| CAACAGTGAAACAGATGAGA+AGG | - | chr7.3:23009104-23009123 | MS.gene08208:intron | 40.0% | |
| CACTATTTATGGTAGCCATG+TGG | - | chr7.3:23009397-23009416 | MS.gene08208:intron | 40.0% | |
| CATTGGATAGTACCTGTTTG+AGG | + | chr7.3:23008906-23008925 | None:intergenic | 40.0% | |
| GAATTGGTGCATAGCTAGAA+AGG | + | chr7.3:23009434-23009453 | None:intergenic | 40.0% | |
| GTATCATCCTGATGTTAGCA+AGG | - | chr7.3:23008422-23008441 | MS.gene08208:CDS | 40.0% | |
| GTCTGACAGCATTGTTTGAT+AGG | - | chr7.3:23009244-23009263 | MS.gene08208:intron | 40.0% | |
| TCTTCATTTGCAGACCAGTT+TGG | - | chr7.3:23007895-23007914 | MS.gene08208:CDS | 40.0% | |
| TGTCAGACCGCTAAATGTAA+GGG | + | chr7.3:23009232-23009251 | None:intergenic | 40.0% | |
| TTGGTCAGATTGCAGCTTAA+TGG | + | chr7.3:23009490-23009509 | None:intergenic | 40.0% | |
| ! | AAACTGGTCTGCAAATGAAG+AGG | + | chr7.3:23007896-23007915 | None:intergenic | 40.0% |
| ! | AAGAGTTAACAGAGCACCTT+GGG | + | chr7.3:23009457-23009476 | None:intergenic | 40.0% |
| ! | GATCTTGTCGTTTGCAAGTT+GGG | - | chr7.3:23009344-23009363 | MS.gene08208:intron | 40.0% |
| ! | GTAATAGCATGGATTTTGGG+TGG | - | chr7.3:23009297-23009316 | MS.gene08208:intron | 40.0% |
| ! | TAAGAGTTAACAGAGCACCT+TGG | + | chr7.3:23009458-23009477 | None:intergenic | 40.0% |
| ! | TGATCTTGTCGTTTGCAAGT+TGG | - | chr7.3:23009343-23009362 | MS.gene08208:intron | 40.0% |
| !! | CGCCAAATGATGGATCTTAT+TGG | - | chr7.3:23008190-23008209 | MS.gene08208:CDS | 40.0% |
| !! | GACGAGGGTATCTATGAATT+TGG | - | chr7.3:23008320-23008339 | MS.gene08208:CDS | 40.0% |
| !! | GTCGTGAGCTTTTTGTTTAG+GGG | + | chr7.3:23008381-23008400 | None:intergenic | 40.0% |
| ACAGATGAGAAGGAGGATGA+AGG | - | chr7.3:23009114-23009133 | MS.gene08208:intron | 45.0% | |
| CAGCTCTCCCTTACATTTAG+CGG | - | chr7.3:23009222-23009241 | MS.gene08208:intron | 45.0% | |
| CAGTGAAACAGATGAGAAGG+AGG | - | chr7.3:23009107-23009126 | MS.gene08208:intron | 45.0% | |
| CTGTCAGACCGCTAAATGTA+AGG | + | chr7.3:23009233-23009252 | None:intergenic | 45.0% | |
| GCTAAATGTAAGGGAGAGCT+GGG | + | chr7.3:23009223-23009242 | None:intergenic | 45.0% | |
| GGAACATTACAATGCCAACG+AGG | - | chr7.3:23009074-23009093 | MS.gene08208:intron | 45.0% | |
| GGTTGCTCACTTCATAAGCA+TGG | + | chr7.3:23008482-23008501 | None:intergenic | 45.0% | |
| TAGTGCAACCACACTACTAC+TGG | + | chr7.3:23009382-23009401 | None:intergenic | 45.0% | |
| TGCTCACTTCATAAGCATGG+CGG | + | chr7.3:23008479-23008498 | None:intergenic | 45.0% | |
| TGGGAAAACCAGTAGTAGTG+TGG | - | chr7.3:23009371-23009390 | MS.gene08208:intron | 45.0% | |
| TTTATGGTAGCCATGTGGGT+TGG | - | chr7.3:23009402-23009421 | MS.gene08208:intron | 45.0% | |
| ! | AGAGTTAACAGAGCACCTTG+GGG | + | chr7.3:23009456-23009475 | None:intergenic | 45.0% |
| ! | CGTTTGCAAGTTGGGTTTGT+GGG | - | chr7.3:23009352-23009371 | MS.gene08208:intron | 45.0% |
| ! | GATATAGGTGGGCTTACATG+AGG | - | chr7.3:23009025-23009044 | MS.gene08208:intron | 45.0% |
| ! | TCGTTTGCAAGTTGGGTTTG+TGG | - | chr7.3:23009351-23009370 | MS.gene08208:intron | 45.0% |
| AGAGCTGGGATCCTAACGTT+TGG | + | chr7.3:23009209-23009228 | None:intergenic | 50.0% | |
| AGCTATGCACCAATTCCCCA+AGG | - | chr7.3:23009438-23009457 | MS.gene08208:intron | 50.0% | |
| CGCTAAATGTAAGGGAGAGC+TGG | + | chr7.3:23009224-23009243 | None:intergenic | 50.0% | |
| ! | AACAGAGCACCTTGGGGAAT+TGG | + | chr7.3:23009450-23009469 | None:intergenic | 50.0% |
| ! | GTCTAGGGCTTCAACCAAAC+TGG | + | chr7.3:23007912-23007931 | None:intergenic | 50.0% |
| !! | AGCATGGATTTTGGGTGGGA+GGG | - | chr7.3:23009302-23009321 | MS.gene08208:intron | 50.0% |
| !! | TAGCATGGATTTTGGGTGGG+AGG | - | chr7.3:23009301-23009320 | MS.gene08208:intron | 50.0% |
| AAGGGATGAGCCAACCCACA+TGG | + | chr7.3:23009415-23009434 | None:intergenic | 55.0% | |
| !! | GCATGGATTTTGGGTGGGAG+GGG | - | chr7.3:23009303-23009322 | MS.gene08208:intron | 55.0% |
| !! | TGGATTTTGGGTGGGAGGGG+TGG | - | chr7.3:23009306-23009325 | MS.gene08208:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 23007877 | 23009515 | 23007877 | ID=MS.gene08208 |
| chr7.3 | mRNA | 23007877 | 23009515 | 23007877 | ID=MS.gene08208.t1;Parent=MS.gene08208 |
| chr7.3 | exon | 23009510 | 23009515 | 23009510 | ID=MS.gene08208.t1.exon1;Parent=MS.gene08208.t1 |
| chr7.3 | CDS | 23009510 | 23009515 | 23009510 | ID=cds.MS.gene08208.t1;Parent=MS.gene08208.t1 |
| chr7.3 | exon | 23008901 | 23008969 | 23008901 | ID=MS.gene08208.t1.exon2;Parent=MS.gene08208.t1 |
| chr7.3 | CDS | 23008901 | 23008969 | 23008901 | ID=cds.MS.gene08208.t1;Parent=MS.gene08208.t1 |
| chr7.3 | exon | 23007877 | 23008479 | 23007877 | ID=MS.gene08208.t1.exon3;Parent=MS.gene08208.t1 |
| chr7.3 | CDS | 23007877 | 23008479 | 23007877 | ID=cds.MS.gene08208.t1;Parent=MS.gene08208.t1 |
| Gene Sequence |
| Protein sequence |
