Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20655.t1 | XP_013450842.1 | 96 | 276 | 7 | 1 | 26 | 301 | 113 | 384 | 6.30E-151 | 543.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20655.t1 | Q9FL07 | 58.4 | 322 | 99 | 10 | 6 | 306 | 68 | 375 | 5.0e-88 | 325.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20655.t1 | A0A072U5F9 | 96.0 | 276 | 7 | 1 | 26 | 301 | 113 | 384 | 4.5e-151 | 543.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene20655 | 0.801186 | 1.01E-48 | -1.69E-46 |
| MS.gene049254 | MS.gene20655 | 0.827763 | 1.31E-54 | -1.69E-46 |
| MS.gene049647 | MS.gene20655 | 0.818427 | 1.97E-52 | -1.69E-46 |
| MS.gene049825 | MS.gene20655 | 0.813877 | 2.05E-51 | -1.69E-46 |
| MS.gene051363 | MS.gene20655 | 0.806249 | 9.02E-50 | -1.69E-46 |
| MS.gene051365 | MS.gene20655 | 0.806645 | 7.44E-50 | -1.69E-46 |
| MS.gene051700 | MS.gene20655 | 0.801861 | 7.37E-49 | -1.69E-46 |
| MS.gene052108 | MS.gene20655 | 0.804003 | 2.66E-49 | -1.69E-46 |
| MS.gene052519 | MS.gene20655 | 0.821705 | 3.50E-53 | -1.69E-46 |
| MS.gene052582 | MS.gene20655 | 0.803188 | 3.93E-49 | -1.69E-46 |
| MS.gene052584 | MS.gene20655 | 0.808741 | 2.67E-50 | -1.69E-46 |
| MS.gene052773 | MS.gene20655 | 0.802396 | 5.72E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene20655 | 0.837887 | 3.99E-57 | -1.69E-46 |
| MS.gene05365 | MS.gene20655 | 0.811778 | 5.91E-51 | -1.69E-46 |
| MS.gene054651 | MS.gene20655 | 0.819788 | 9.66E-53 | -1.69E-46 |
| MS.gene055586 | MS.gene20655 | 0.81692 | 4.31E-52 | -1.69E-46 |
| MS.gene055778 | MS.gene20655 | 0.812921 | 3.32E-51 | -1.69E-46 |
| MS.gene055818 | MS.gene20655 | 0.804497 | 2.10E-49 | -1.69E-46 |
| MS.gene05659 | MS.gene20655 | 0.826596 | 2.49E-54 | -1.69E-46 |
| MS.gene057026 | MS.gene20655 | 0.805019 | 1.63E-49 | -1.69E-46 |
| MS.gene057208 | MS.gene20655 | 0.805607 | 1.23E-49 | -1.69E-46 |
| MS.gene058008 | MS.gene20655 | 0.8001 | 1.69E-48 | -1.69E-46 |
| MS.gene058009 | MS.gene20655 | 0.806078 | 9.80E-50 | -1.69E-46 |
| MS.gene058037 | MS.gene20655 | 0.818298 | 2.11E-52 | -1.69E-46 |
| MS.gene058502 | MS.gene20655 | 0.802305 | 5.97E-49 | -1.69E-46 |
| MS.gene058625 | MS.gene20655 | 0.81774 | 2.82E-52 | -1.69E-46 |
| MS.gene058783 | MS.gene20655 | 0.800462 | 1.43E-48 | -1.69E-46 |
| MS.gene058829 | MS.gene20655 | 0.801093 | 1.06E-48 | -1.69E-46 |
| MS.gene058979 | MS.gene20655 | 0.822532 | 2.25E-53 | -1.69E-46 |
| MS.gene05954 | MS.gene20655 | 0.803656 | 3.14E-49 | -1.69E-46 |
| MS.gene059625 | MS.gene20655 | 0.811921 | 5.50E-51 | -1.69E-46 |
| MS.gene059935 | MS.gene20655 | 0.816906 | 4.34E-52 | -1.69E-46 |
| MS.gene060365 | MS.gene20655 | 0.813177 | 2.92E-51 | -1.69E-46 |
| MS.gene060572 | MS.gene20655 | 0.80584 | 1.10E-49 | -1.69E-46 |
| MS.gene060586 | MS.gene20655 | 0.808165 | 3.54E-50 | -1.69E-46 |
| MS.gene060781 | MS.gene20655 | 0.801187 | 1.01E-48 | -1.69E-46 |
| MS.gene060879 | MS.gene20655 | 0.807991 | 3.86E-50 | -1.69E-46 |
| MS.gene060935 | MS.gene20655 | 0.807062 | 6.07E-50 | -1.69E-46 |
| MS.gene060937 | MS.gene20655 | 0.809477 | 1.86E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20655.t1 | MTR_6g007737 | 95.946 | 296 | 7 | 2 | 6 | 301 | 94 | 384 | 0.0 | 585 |
| MS.gene20655.t1 | MTR_8g063660 | 55.197 | 279 | 115 | 3 | 6 | 274 | 28 | 306 | 1.19e-92 | 278 |
| MS.gene20655.t1 | MTR_5g034790 | 56.140 | 285 | 111 | 6 | 6 | 283 | 72 | 349 | 5.95e-91 | 275 |
| MS.gene20655.t1 | MTR_4g106680 | 51.429 | 280 | 92 | 9 | 6 | 281 | 67 | 306 | 3.56e-84 | 256 |
| MS.gene20655.t1 | MTR_4g129420 | 38.871 | 319 | 120 | 12 | 24 | 274 | 95 | 406 | 1.25e-50 | 175 |
| MS.gene20655.t1 | MTR_3g100400 | 53.521 | 71 | 33 | 0 | 44 | 114 | 128 | 198 | 4.70e-23 | 98.6 |
| MS.gene20655.t1 | MTR_5g030010 | 42.453 | 106 | 61 | 0 | 12 | 117 | 88 | 193 | 3.44e-22 | 95.5 |
| MS.gene20655.t1 | MTR_5g064890 | 52.500 | 80 | 38 | 0 | 46 | 125 | 128 | 207 | 1.81e-21 | 93.6 |
| MS.gene20655.t1 | MTR_3g110190 | 46.591 | 88 | 45 | 1 | 44 | 131 | 64 | 149 | 3.41e-21 | 92.4 |
| MS.gene20655.t1 | MTR_8g089880 | 45.882 | 85 | 46 | 0 | 46 | 130 | 127 | 211 | 6.71e-21 | 90.5 |
| MS.gene20655.t1 | MTR_4g093830 | 45.349 | 86 | 47 | 0 | 39 | 124 | 119 | 204 | 7.86e-21 | 91.7 |
| MS.gene20655.t1 | MTR_5g066250 | 48.684 | 76 | 39 | 0 | 39 | 114 | 127 | 202 | 1.89e-20 | 91.3 |
| MS.gene20655.t1 | MTR_2g009310 | 40.517 | 116 | 57 | 2 | 11 | 120 | 100 | 209 | 2.75e-20 | 90.5 |
| MS.gene20655.t1 | MTR_4g063070 | 37.500 | 136 | 70 | 3 | 5 | 129 | 262 | 393 | 4.32e-20 | 90.1 |
| MS.gene20655.t1 | MTR_8g066780 | 43.750 | 96 | 52 | 1 | 30 | 123 | 98 | 193 | 2.60e-19 | 87.4 |
| MS.gene20655.t1 | MTR_3g091620 | 32.857 | 140 | 69 | 2 | 46 | 165 | 101 | 235 | 3.48e-19 | 87.0 |
| MS.gene20655.t1 | MTR_6g087150 | 48.571 | 70 | 36 | 0 | 45 | 114 | 92 | 161 | 4.56e-19 | 87.0 |
| MS.gene20655.t1 | MTR_1g074190 | 50.000 | 78 | 33 | 1 | 46 | 117 | 99 | 176 | 1.30e-18 | 85.1 |
| MS.gene20655.t1 | MTR_1g070140 | 37.705 | 122 | 64 | 4 | 42 | 158 | 99 | 213 | 1.34e-18 | 85.1 |
| MS.gene20655.t1 | MTR_4g120270 | 48.649 | 74 | 36 | 1 | 46 | 119 | 80 | 151 | 2.97e-18 | 83.2 |
| MS.gene20655.t1 | MTR_8g023400 | 48.750 | 80 | 32 | 2 | 39 | 114 | 85 | 159 | 4.29e-18 | 83.6 |
| MS.gene20655.t1 | MTR_7g076250 | 41.772 | 79 | 45 | 1 | 41 | 118 | 58 | 136 | 6.37e-18 | 80.5 |
| MS.gene20655.t1 | MTR_3g099650 | 43.750 | 80 | 42 | 1 | 41 | 117 | 102 | 181 | 6.71e-18 | 83.6 |
| MS.gene20655.t1 | MTR_8g009190 | 52.113 | 71 | 31 | 1 | 50 | 117 | 80 | 150 | 8.54e-18 | 82.4 |
| MS.gene20655.t1 | MTR_5g064980 | 46.053 | 76 | 38 | 1 | 45 | 117 | 107 | 182 | 9.90e-18 | 83.2 |
| MS.gene20655.t1 | MTR_3g078450 | 38.043 | 92 | 55 | 1 | 33 | 122 | 63 | 154 | 1.08e-17 | 80.5 |
| MS.gene20655.t1 | MTR_2g044570 | 54.545 | 66 | 27 | 1 | 55 | 117 | 63 | 128 | 1.53e-17 | 81.6 |
| MS.gene20655.t1 | MTR_3g078470 | 36.957 | 92 | 56 | 1 | 33 | 122 | 63 | 154 | 1.63e-17 | 80.1 |
| MS.gene20655.t1 | MTR_7g113800 | 44.737 | 76 | 37 | 2 | 46 | 117 | 91 | 165 | 2.70e-17 | 81.6 |
| MS.gene20655.t1 | MTR_4g030070 | 38.776 | 98 | 47 | 2 | 20 | 117 | 71 | 155 | 4.83e-17 | 79.0 |
| MS.gene20655.t1 | MTR_1g082550 | 46.053 | 76 | 36 | 2 | 46 | 117 | 98 | 172 | 5.13e-17 | 80.9 |
| MS.gene20655.t1 | MTR_6g055030 | 39.535 | 86 | 49 | 1 | 46 | 128 | 97 | 182 | 6.89e-17 | 80.1 |
| MS.gene20655.t1 | MTR_5g064990 | 48.000 | 75 | 36 | 1 | 46 | 117 | 114 | 188 | 7.08e-17 | 80.5 |
| MS.gene20655.t1 | MTR_1g100737 | 40.506 | 79 | 42 | 1 | 44 | 117 | 90 | 168 | 7.90e-17 | 77.8 |
| MS.gene20655.t1 | MTR_6g007680 | 45.070 | 71 | 39 | 0 | 47 | 117 | 41 | 111 | 8.18e-17 | 76.6 |
| MS.gene20655.t1 | MTR_7g073200 | 42.045 | 88 | 49 | 2 | 37 | 123 | 72 | 158 | 9.59e-17 | 77.0 |
| MS.gene20655.t1 | MTR_1g043410 | 47.222 | 72 | 35 | 1 | 46 | 114 | 94 | 165 | 1.01e-16 | 79.7 |
| MS.gene20655.t1 | MTR_7g116220 | 46.667 | 75 | 37 | 1 | 46 | 117 | 70 | 144 | 1.31e-16 | 76.6 |
| MS.gene20655.t1 | MTR_7g116180 | 46.667 | 75 | 37 | 1 | 46 | 117 | 67 | 141 | 3.97e-16 | 75.5 |
| MS.gene20655.t1 | MTR_3g086730 | 38.095 | 126 | 60 | 4 | 7 | 128 | 20 | 131 | 5.33e-16 | 76.3 |
| MS.gene20655.t1 | MTR_2g090905 | 41.379 | 87 | 45 | 1 | 38 | 118 | 31 | 117 | 5.56e-16 | 73.6 |
| MS.gene20655.t1 | MTR_2g090950 | 42.045 | 88 | 43 | 2 | 38 | 118 | 83 | 169 | 7.20e-16 | 75.9 |
| MS.gene20655.t1 | MTR_1g070425 | 46.667 | 75 | 37 | 1 | 46 | 117 | 68 | 142 | 7.49e-16 | 74.7 |
| MS.gene20655.t1 | MTR_3g094000 | 40.000 | 90 | 50 | 2 | 31 | 117 | 76 | 164 | 8.35e-16 | 74.3 |
| MS.gene20655.t1 | MTR_7g096690 | 43.038 | 79 | 41 | 1 | 46 | 120 | 70 | 148 | 1.26e-15 | 76.6 |
| MS.gene20655.t1 | MTR_4g056590 | 42.105 | 76 | 41 | 2 | 46 | 121 | 100 | 172 | 1.62e-15 | 73.9 |
| MS.gene20655.t1 | MTR_1g492830 | 41.892 | 74 | 42 | 1 | 46 | 118 | 61 | 134 | 2.05e-15 | 74.3 |
| MS.gene20655.t1 | MTR_3g086700 | 37.302 | 126 | 61 | 4 | 7 | 128 | 20 | 131 | 2.15e-15 | 73.6 |
| MS.gene20655.t1 | MTR_7g117540 | 50.667 | 75 | 28 | 3 | 47 | 117 | 77 | 146 | 2.18e-15 | 75.5 |
| MS.gene20655.t1 | MTR_8g027980 | 52.778 | 72 | 31 | 2 | 49 | 117 | 93 | 164 | 3.56e-15 | 74.3 |
| MS.gene20655.t1 | MTR_2g096350 | 46.053 | 76 | 39 | 1 | 42 | 115 | 103 | 178 | 5.90e-15 | 72.8 |
| MS.gene20655.t1 | MTR_7g116200 | 47.143 | 70 | 36 | 1 | 46 | 115 | 68 | 136 | 6.45e-15 | 71.6 |
| MS.gene20655.t1 | MTR_5g024730 | 38.824 | 85 | 42 | 2 | 42 | 120 | 73 | 153 | 6.59e-15 | 72.8 |
| MS.gene20655.t1 | MTR_8g099495 | 40.816 | 98 | 48 | 2 | 28 | 115 | 293 | 390 | 7.30e-15 | 74.7 |
| MS.gene20655.t1 | MTR_3g464780 | 31.169 | 154 | 77 | 4 | 43 | 192 | 99 | 227 | 7.61e-15 | 73.2 |
| MS.gene20655.t1 | MTR_7g079280 | 40.000 | 75 | 39 | 2 | 46 | 116 | 80 | 152 | 9.36e-15 | 71.6 |
| MS.gene20655.t1 | MTR_8g028465 | 40.845 | 71 | 40 | 1 | 46 | 116 | 90 | 158 | 1.33e-14 | 71.6 |
| MS.gene20655.t1 | MTR_3g114500 | 40.476 | 84 | 47 | 1 | 44 | 127 | 46 | 126 | 1.46e-14 | 69.7 |
| MS.gene20655.t1 | MTR_8g032690 | 57.447 | 47 | 20 | 0 | 72 | 118 | 19 | 65 | 1.64e-14 | 68.9 |
| MS.gene20655.t1 | MTR_3g071300 | 43.590 | 78 | 40 | 1 | 46 | 119 | 76 | 153 | 1.86e-14 | 70.5 |
| MS.gene20655.t1 | MTR_8g073120 | 38.750 | 80 | 39 | 2 | 42 | 115 | 66 | 141 | 2.10e-14 | 71.2 |
| MS.gene20655.t1 | MTR_2g436100 | 43.836 | 73 | 41 | 0 | 46 | 118 | 93 | 165 | 2.15e-14 | 72.4 |
| MS.gene20655.t1 | MTR_2g035800 | 41.558 | 77 | 45 | 0 | 44 | 120 | 74 | 150 | 3.13e-14 | 69.7 |
| MS.gene20655.t1 | MTR_5g076990 | 41.026 | 78 | 42 | 1 | 46 | 119 | 76 | 153 | 4.41e-14 | 71.6 |
| MS.gene20655.t1 | MTR_2g055790 | 35.833 | 120 | 58 | 4 | 1 | 120 | 48 | 148 | 5.30e-14 | 69.7 |
| MS.gene20655.t1 | MTR_7g116210 | 45.714 | 70 | 37 | 1 | 46 | 115 | 10 | 78 | 5.84e-14 | 67.4 |
| MS.gene20655.t1 | MTR_3g116000 | 61.702 | 47 | 18 | 0 | 71 | 117 | 103 | 149 | 6.00e-14 | 69.7 |
| MS.gene20655.t1 | MTR_7g079290 | 35.294 | 85 | 51 | 2 | 46 | 126 | 125 | 209 | 8.30e-14 | 69.7 |
| MS.gene20655.t1 | MTR_3g095560 | 59.574 | 47 | 19 | 0 | 71 | 117 | 135 | 181 | 1.58e-13 | 69.3 |
| MS.gene20655.t1 | MTR_4g094725 | 41.026 | 78 | 44 | 1 | 44 | 119 | 76 | 153 | 1.80e-13 | 67.4 |
| MS.gene20655.t1 | MTR_3g081030 | 44.444 | 81 | 44 | 1 | 47 | 127 | 95 | 174 | 3.44e-13 | 67.8 |
| MS.gene20655.t1 | MTR_8g092990 | 57.447 | 47 | 20 | 0 | 71 | 117 | 140 | 186 | 3.78e-13 | 68.2 |
| MS.gene20655.t1 | MTR_8g092970 | 57.447 | 47 | 20 | 0 | 71 | 117 | 130 | 176 | 4.73e-13 | 67.4 |
| MS.gene20655.t1 | MTR_8g092840 | 38.462 | 78 | 47 | 1 | 41 | 117 | 108 | 185 | 6.62e-13 | 67.4 |
| MS.gene20655.t1 | MTR_8g092960 | 55.319 | 47 | 21 | 0 | 71 | 117 | 129 | 175 | 7.45e-13 | 67.0 |
| MS.gene20655.t1 | MTR_3g078120 | 50.000 | 62 | 29 | 1 | 55 | 114 | 66 | 127 | 7.52e-13 | 65.5 |
| MS.gene20655.t1 | MTR_7g108855 | 41.892 | 74 | 41 | 1 | 47 | 118 | 67 | 140 | 8.89e-13 | 66.2 |
| MS.gene20655.t1 | MTR_5g009200 | 34.821 | 112 | 71 | 1 | 5 | 114 | 281 | 392 | 9.59e-13 | 68.6 |
| MS.gene20655.t1 | MTR_5g026730 | 57.778 | 45 | 19 | 0 | 72 | 116 | 94 | 138 | 9.69e-13 | 65.9 |
| MS.gene20655.t1 | MTR_6g055030 | 49.180 | 61 | 30 | 1 | 69 | 128 | 91 | 151 | 1.33e-12 | 67.4 |
| MS.gene20655.t1 | MTR_8g092930 | 39.726 | 73 | 43 | 1 | 46 | 117 | 112 | 184 | 1.58e-12 | 66.2 |
| MS.gene20655.t1 | MTR_5g009210 | 43.421 | 76 | 41 | 1 | 41 | 114 | 282 | 357 | 1.75e-12 | 67.4 |
| MS.gene20655.t1 | MTR_5g009190 | 42.105 | 76 | 42 | 1 | 41 | 114 | 261 | 336 | 2.58e-12 | 67.0 |
| MS.gene20655.t1 | MTR_6g007670 | 44.615 | 65 | 35 | 1 | 52 | 115 | 151 | 215 | 2.58e-12 | 65.9 |
| MS.gene20655.t1 | MTR_6g007670 | 54.167 | 48 | 22 | 0 | 70 | 117 | 31 | 78 | 3.51e-12 | 65.5 |
| MS.gene20655.t1 | MTR_8g071815 | 56.818 | 44 | 19 | 0 | 72 | 115 | 90 | 133 | 2.63e-12 | 64.7 |
| MS.gene20655.t1 | MTR_8g092985 | 38.667 | 75 | 45 | 1 | 44 | 117 | 109 | 183 | 2.78e-12 | 65.1 |
| MS.gene20655.t1 | MTR_3g012550 | 32.258 | 93 | 59 | 2 | 46 | 134 | 80 | 172 | 3.59e-12 | 64.3 |
| MS.gene20655.t1 | MTR_5g092790 | 40.845 | 71 | 40 | 1 | 46 | 114 | 157 | 227 | 4.37e-12 | 65.1 |
| MS.gene20655.t1 | MTR_4g077570 | 52.000 | 50 | 20 | 2 | 68 | 114 | 7 | 55 | 5.47e-12 | 61.2 |
| MS.gene20655.t1 | MTR_5g082940 | 36.364 | 77 | 47 | 1 | 46 | 120 | 75 | 151 | 6.27e-12 | 63.5 |
| MS.gene20655.t1 | MTR_8g066740 | 38.158 | 76 | 43 | 1 | 46 | 117 | 76 | 151 | 7.04e-12 | 65.5 |
| MS.gene20655.t1 | MTR_8g093010 | 36.000 | 75 | 47 | 1 | 44 | 117 | 105 | 179 | 8.82e-12 | 63.9 |
| MS.gene20655.t1 | MTR_8g098770 | 49.206 | 63 | 29 | 2 | 53 | 114 | 69 | 129 | 1.15e-11 | 62.4 |
| MS.gene20655.t1 | MTR_5g026720 | 37.500 | 72 | 40 | 1 | 50 | 116 | 66 | 137 | 1.31e-11 | 62.4 |
| MS.gene20655.t1 | MTR_8g099515 | 41.860 | 86 | 46 | 2 | 46 | 129 | 309 | 392 | 1.59e-11 | 64.7 |
| MS.gene20655.t1 | MTR_5g071930 | 38.889 | 72 | 41 | 1 | 46 | 117 | 66 | 134 | 1.99e-11 | 62.4 |
| MS.gene20655.t1 | MTR_3g091200 | 35.897 | 78 | 48 | 1 | 41 | 116 | 298 | 375 | 2.04e-11 | 64.3 |
| MS.gene20655.t1 | MTR_1g026070 | 37.975 | 79 | 46 | 1 | 44 | 122 | 46 | 121 | 2.08e-11 | 60.8 |
| MS.gene20655.t1 | MTR_8g074900 | 37.037 | 81 | 46 | 2 | 35 | 114 | 146 | 222 | 2.87e-11 | 62.8 |
| MS.gene20655.t1 | MTR_5g092750 | 39.437 | 71 | 41 | 1 | 46 | 114 | 157 | 227 | 2.96e-11 | 62.8 |
| MS.gene20655.t1 | MTR_3g078520 | 35.526 | 76 | 48 | 1 | 46 | 120 | 76 | 151 | 4.18e-11 | 60.8 |
| MS.gene20655.t1 | MTR_1g056350 | 38.298 | 94 | 47 | 4 | 28 | 116 | 60 | 147 | 4.42e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20655.t1 | AT5G40250 | 60.185 | 324 | 90 | 11 | 6 | 306 | 68 | 375 | 2.34e-116 | 340 |
| MS.gene20655.t1 | AT1G23980 | 55.970 | 268 | 92 | 5 | 9 | 272 | 81 | 326 | 1.23e-78 | 244 |
| MS.gene20655.t1 | AT4G30400 | 39.498 | 319 | 133 | 12 | 13 | 276 | 77 | 390 | 5.43e-52 | 177 |
| MS.gene20655.t1 | AT2G18650 | 38.944 | 303 | 150 | 11 | 6 | 279 | 62 | 358 | 3.01e-51 | 174 |
| MS.gene20655.t1 | AT3G48030 | 47.644 | 191 | 83 | 5 | 35 | 224 | 91 | 265 | 7.16e-49 | 164 |
| MS.gene20655.t1 | AT3G48030 | 47.644 | 191 | 83 | 5 | 35 | 224 | 169 | 343 | 4.45e-48 | 164 |
| MS.gene20655.t1 | AT5G57750 | 63.636 | 88 | 31 | 1 | 28 | 114 | 77 | 164 | 7.02e-34 | 123 |
| MS.gene20655.t1 | AT5G05810 | 53.521 | 71 | 33 | 0 | 44 | 114 | 118 | 188 | 5.35e-22 | 95.5 |
| MS.gene20655.t1 | AT3G03550 | 47.619 | 84 | 44 | 0 | 37 | 120 | 124 | 207 | 1.09e-21 | 94.0 |
| MS.gene20655.t1 | AT2G20030 | 53.521 | 71 | 33 | 0 | 45 | 115 | 97 | 167 | 2.85e-21 | 93.2 |
| MS.gene20655.t1 | AT5G17600 | 42.056 | 107 | 57 | 1 | 9 | 115 | 84 | 185 | 5.30e-21 | 92.4 |
| MS.gene20655.t1 | AT4G28890 | 44.554 | 101 | 46 | 2 | 45 | 137 | 96 | 194 | 7.09e-21 | 92.8 |
| MS.gene20655.t1 | AT1G72220 | 46.154 | 91 | 47 | 1 | 39 | 129 | 144 | 232 | 8.45e-21 | 92.4 |
| MS.gene20655.t1 | AT4G09110 | 42.574 | 101 | 53 | 3 | 37 | 132 | 84 | 184 | 1.42e-20 | 90.1 |
| MS.gene20655.t1 | AT1G35330 | 37.097 | 124 | 64 | 2 | 11 | 131 | 76 | 188 | 1.74e-20 | 90.5 |
| MS.gene20655.t1 | AT4G33565 | 48.101 | 79 | 41 | 0 | 39 | 117 | 184 | 262 | 5.10e-20 | 89.7 |
| MS.gene20655.t1 | AT3G60220 | 52.113 | 71 | 31 | 1 | 50 | 117 | 92 | 162 | 5.54e-20 | 89.0 |
| MS.gene20655.t1 | AT2G47560 | 48.837 | 86 | 42 | 1 | 43 | 126 | 77 | 162 | 1.08e-19 | 86.3 |
| MS.gene20655.t1 | AT5G10380 | 46.341 | 82 | 44 | 0 | 36 | 117 | 99 | 180 | 2.37e-19 | 86.7 |
| MS.gene20655.t1 | AT4G09130 | 42.857 | 91 | 48 | 2 | 46 | 132 | 91 | 181 | 2.49e-19 | 87.4 |
| MS.gene20655.t1 | AT4G40070 | 42.000 | 100 | 44 | 4 | 46 | 141 | 95 | 184 | 6.08e-19 | 85.9 |
| MS.gene20655.t1 | AT2G35000 | 40.367 | 109 | 60 | 2 | 17 | 120 | 75 | 183 | 6.12e-19 | 86.7 |
| MS.gene20655.t1 | AT3G16720 | 50.000 | 74 | 36 | 1 | 46 | 119 | 94 | 166 | 1.63e-18 | 84.3 |
| MS.gene20655.t1 | AT5G43420 | 43.678 | 87 | 35 | 1 | 42 | 114 | 94 | 180 | 2.40e-18 | 84.7 |
| MS.gene20655.t1 | AT1G53820 | 46.053 | 76 | 40 | 1 | 42 | 117 | 91 | 165 | 2.81e-18 | 84.0 |
| MS.gene20655.t1 | AT1G04360 | 47.619 | 84 | 37 | 2 | 41 | 117 | 96 | 179 | 4.02e-18 | 84.3 |
| MS.gene20655.t1 | AT1G72200 | 48.000 | 75 | 36 | 1 | 46 | 117 | 115 | 189 | 5.36e-18 | 84.0 |
| MS.gene20655.t1 | AT4G09120 | 46.667 | 75 | 37 | 1 | 46 | 117 | 94 | 168 | 1.02e-17 | 82.8 |
| MS.gene20655.t1 | AT2G42350 | 42.553 | 94 | 42 | 3 | 46 | 131 | 75 | 164 | 1.71e-17 | 80.1 |
| MS.gene20655.t1 | AT1G22500 | 45.455 | 77 | 39 | 1 | 44 | 117 | 87 | 163 | 1.88e-17 | 82.4 |
| MS.gene20655.t1 | AT2G34990 | 44.318 | 88 | 42 | 3 | 46 | 127 | 67 | 153 | 2.78e-17 | 80.9 |
| MS.gene20655.t1 | AT2G34990 | 44.318 | 88 | 42 | 3 | 46 | 127 | 89 | 175 | 2.93e-17 | 81.3 |
| MS.gene20655.t1 | AT4G15975 | 30.534 | 131 | 77 | 3 | 46 | 165 | 51 | 178 | 4.88e-17 | 79.3 |
| MS.gene20655.t1 | AT3G18930 | 45.122 | 82 | 35 | 1 | 46 | 117 | 120 | 201 | 1.32e-16 | 80.1 |
| MS.gene20655.t1 | AT3G18930 | 45.122 | 82 | 35 | 1 | 46 | 117 | 120 | 201 | 1.32e-16 | 80.1 |
| MS.gene20655.t1 | AT3G18930 | 45.122 | 82 | 35 | 1 | 46 | 117 | 120 | 201 | 1.32e-16 | 80.1 |
| MS.gene20655.t1 | AT1G20823 | 46.667 | 75 | 39 | 1 | 44 | 117 | 82 | 156 | 4.00e-16 | 75.9 |
| MS.gene20655.t1 | AT2G35420 | 38.542 | 96 | 54 | 2 | 24 | 114 | 50 | 145 | 5.17e-16 | 76.6 |
| MS.gene20655.t1 | AT5G01880 | 42.466 | 73 | 42 | 0 | 45 | 117 | 78 | 150 | 7.33e-16 | 73.9 |
| MS.gene20655.t1 | AT1G72310 | 42.105 | 76 | 43 | 1 | 42 | 117 | 98 | 172 | 7.71e-16 | 77.0 |
| MS.gene20655.t1 | AT3G62690 | 44.444 | 72 | 40 | 0 | 47 | 118 | 88 | 159 | 9.65e-16 | 75.9 |
| MS.gene20655.t1 | AT2G42360 | 40.476 | 84 | 49 | 1 | 36 | 118 | 71 | 154 | 1.33e-15 | 75.1 |
| MS.gene20655.t1 | AT5G46650 | 39.423 | 104 | 58 | 3 | 22 | 121 | 62 | 164 | 1.88e-15 | 75.5 |
| MS.gene20655.t1 | AT3G05200 | 43.421 | 76 | 38 | 2 | 46 | 117 | 99 | 173 | 2.28e-15 | 76.3 |
| MS.gene20655.t1 | AT4G09100 | 44.737 | 76 | 37 | 2 | 46 | 117 | 56 | 130 | 2.48e-15 | 72.0 |
| MS.gene20655.t1 | AT2G27940 | 38.776 | 98 | 54 | 4 | 46 | 140 | 115 | 209 | 3.77e-15 | 73.9 |
| MS.gene20655.t1 | AT4G17905 | 45.570 | 79 | 33 | 2 | 45 | 117 | 126 | 200 | 3.92e-15 | 75.1 |
| MS.gene20655.t1 | AT1G76410 | 45.333 | 75 | 40 | 1 | 44 | 117 | 75 | 149 | 6.57e-15 | 72.0 |
| MS.gene20655.t1 | AT2G46160 | 39.241 | 79 | 40 | 1 | 46 | 116 | 104 | 182 | 6.93e-15 | 72.8 |
| MS.gene20655.t1 | AT2G46160 | 39.241 | 79 | 40 | 1 | 46 | 116 | 104 | 182 | 6.93e-15 | 72.8 |
| MS.gene20655.t1 | AT4G17905 | 45.570 | 79 | 33 | 2 | 45 | 117 | 152 | 226 | 7.19e-15 | 74.3 |
| MS.gene20655.t1 | AT1G33480 | 44.444 | 72 | 39 | 1 | 46 | 117 | 75 | 145 | 9.13e-15 | 73.2 |
| MS.gene20655.t1 | AT4G35480 | 57.447 | 47 | 20 | 0 | 71 | 117 | 112 | 158 | 1.13e-14 | 72.0 |
| MS.gene20655.t1 | AT3G10910 | 41.096 | 73 | 43 | 0 | 45 | 117 | 87 | 159 | 1.25e-14 | 71.2 |
| MS.gene20655.t1 | AT3G61550 | 36.585 | 82 | 41 | 1 | 46 | 116 | 99 | 180 | 1.39e-14 | 72.0 |
| MS.gene20655.t1 | AT4G10160 | 43.056 | 72 | 40 | 1 | 46 | 117 | 72 | 142 | 1.70e-14 | 72.0 |
| MS.gene20655.t1 | AT3G14320 | 43.478 | 69 | 38 | 1 | 46 | 114 | 63 | 130 | 2.87e-14 | 70.9 |
| MS.gene20655.t1 | AT5G27420 | 43.421 | 76 | 38 | 2 | 46 | 117 | 95 | 169 | 3.14e-14 | 72.8 |
| MS.gene20655.t1 | AT5G05280 | 40.278 | 72 | 42 | 1 | 46 | 117 | 88 | 158 | 4.12e-14 | 69.7 |
| MS.gene20655.t1 | AT2G35910 | 46.377 | 69 | 37 | 0 | 46 | 114 | 121 | 189 | 4.89e-14 | 70.5 |
| MS.gene20655.t1 | AT4G10150 | 43.056 | 72 | 40 | 1 | 46 | 117 | 86 | 156 | 7.55e-14 | 70.1 |
| MS.gene20655.t1 | AT5G07040 | 32.967 | 91 | 57 | 2 | 46 | 134 | 66 | 154 | 2.53e-13 | 67.0 |
| MS.gene20655.t1 | AT4G17920 | 41.558 | 77 | 42 | 1 | 44 | 117 | 79 | 155 | 5.48e-13 | 68.6 |
| MS.gene20655.t1 | AT2G17450 | 51.064 | 47 | 23 | 0 | 71 | 117 | 101 | 147 | 7.91e-13 | 66.2 |
| MS.gene20655.t1 | AT2G18670 | 43.243 | 74 | 41 | 1 | 46 | 118 | 83 | 156 | 1.25e-12 | 65.9 |
| MS.gene20655.t1 | AT3G19140 | 34.831 | 89 | 57 | 1 | 30 | 118 | 38 | 125 | 1.93e-12 | 64.3 |
| MS.gene20655.t1 | AT5G53110 | 42.353 | 85 | 43 | 2 | 38 | 116 | 290 | 374 | 2.44e-12 | 67.4 |
| MS.gene20655.t1 | AT1G49220 | 38.961 | 77 | 42 | 2 | 44 | 117 | 106 | 180 | 2.67e-12 | 65.9 |
| MS.gene20655.t1 | AT1G32361 | 36.905 | 84 | 50 | 2 | 46 | 128 | 130 | 211 | 3.23e-12 | 66.6 |
| MS.gene20655.t1 | AT1G49230 | 53.191 | 47 | 22 | 0 | 71 | 117 | 130 | 176 | 5.48e-12 | 64.7 |
| MS.gene20655.t1 | AT3G18773 | 37.662 | 77 | 43 | 2 | 44 | 117 | 101 | 175 | 6.74e-12 | 64.3 |
| MS.gene20655.t1 | AT4G24015 | 43.478 | 69 | 38 | 1 | 53 | 121 | 87 | 154 | 1.12e-11 | 62.8 |
| MS.gene20655.t1 | AT1G49210 | 37.662 | 77 | 43 | 2 | 44 | 117 | 106 | 180 | 1.20e-11 | 63.9 |
| MS.gene20655.t1 | AT2G46493 | 28.448 | 116 | 76 | 3 | 4 | 116 | 71 | 182 | 1.49e-11 | 62.8 |
| MS.gene20655.t1 | AT1G49200 | 36.364 | 77 | 44 | 2 | 44 | 117 | 107 | 181 | 1.55e-11 | 63.5 |
| MS.gene20655.t1 | AT4G11360 | 37.895 | 95 | 46 | 4 | 23 | 114 | 45 | 129 | 3.25e-11 | 61.2 |
| MS.gene20655.t1 | AT5G58580 | 41.333 | 75 | 43 | 1 | 44 | 117 | 109 | 183 | 3.50e-11 | 63.5 |
| MS.gene20655.t1 | AT1G28040 | 32.353 | 102 | 62 | 3 | 18 | 116 | 200 | 297 | 4.53e-11 | 63.2 |
| MS.gene20655.t1 | AT1G71980 | 41.558 | 77 | 42 | 3 | 46 | 120 | 205 | 280 | 5.31e-11 | 63.5 |
| MS.gene20655.t1 | AT1G22670 | 38.462 | 78 | 45 | 3 | 46 | 121 | 205 | 281 | 7.70e-11 | 62.8 |
| MS.gene20655.t1 | AT2G44578 | 50.000 | 46 | 23 | 0 | 72 | 117 | 70 | 115 | 9.37e-11 | 59.7 |
| MS.gene20655.t1 | AT4G30370 | 38.889 | 72 | 44 | 0 | 43 | 114 | 86 | 157 | 1.00e-10 | 60.1 |
Find 56 sgRNAs with CRISPR-Local
Find 76 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTGGCCATAACCAAATTT+TGG | 0.157592 | 6.3:+3734484 | None:intergenic |
| TATTCGATTTCGATGATCTT+AGG | 0.158395 | 6.3:-3734892 | MS.gene20655:CDS |
| AATTCTACTCTCATGGTTTA+AGG | 0.162913 | 6.3:+3734622 | None:intergenic |
| GGAAACAAGTAGTAGTAATT+TGG | 0.288672 | 6.3:-3734711 | MS.gene20655:CDS |
| TTGAGGAAGTTGTTGATAAA+GGG | 0.310918 | 6.3:-3734805 | MS.gene20655:CDS |
| GTTGAGGAAGTTGTTGATAA+AGG | 0.336638 | 6.3:-3734806 | MS.gene20655:CDS |
| GTTATCAAAGGAATTGAAAA+TGG | 0.356686 | 6.3:-3734584 | MS.gene20655:CDS |
| AACAAAGATTTGCAGAATCA+TGG | 0.368301 | 6.3:-3734398 | MS.gene20655:CDS |
| TTGAATTTCCCGAGTCGAAC+CGG | 0.368984 | 6.3:+3734776 | None:intergenic |
| AGAGGAACACTTCAAACTAA+TGG | 0.369520 | 6.3:-3734935 | MS.gene20655:CDS |
| CTATTTCCAAAATTTGGTTA+TGG | 0.370519 | 6.3:-3734490 | MS.gene20655:CDS |
| TGTAATGGAGAGAATGGATT+TGG | 0.372483 | 6.3:-3734851 | MS.gene20655:CDS |
| TGGTTGGAAATTCAGAGTTA+AGG | 0.382406 | 6.3:-3734649 | MS.gene20655:CDS |
| GGTTGGAAATTCAGAGTTAA+GGG | 0.387873 | 6.3:-3734648 | MS.gene20655:CDS |
| AGTTCTTTAGAAGCTCATAA+TGG | 0.409499 | 6.3:-3734443 | MS.gene20655:CDS |
| GTAGAGAGAATGAAGAAGTA+GGG | 0.416897 | 6.3:-3734733 | MS.gene20655:CDS |
| ATTCGATTTCGATGATCTTA+GGG | 0.431362 | 6.3:-3734891 | MS.gene20655:CDS |
| ATATAAGTTGTATAGATACT+TGG | 0.434910 | 6.3:-3734988 | MS.gene20655:CDS |
| CGCAAGAAGATGTTATTCAA+TGG | 0.442403 | 6.3:-3734687 | MS.gene20655:CDS |
| AAATCTTTGTTAAGATATGA+TGG | 0.460353 | 6.3:+3734410 | None:intergenic |
| TTTCAATTCAAGGAGATTGT+TGG | 0.461922 | 6.3:-3735103 | MS.gene20655:CDS |
| GGTAGAGAGAATGAAGAAGT+AGG | 0.472099 | 6.3:-3734734 | MS.gene20655:CDS |
| AGATCATCGAAATCGAATAT+CGG | 0.475880 | 6.3:+3734896 | None:intergenic |
| TTAGAAGAACTTGATGAAGA+TGG | 0.478882 | 6.3:+3735244 | None:intergenic |
| AATTTGGTTATGGCCAAGAA+AGG | 0.479921 | 6.3:-3734480 | MS.gene20655:CDS |
| CATGATGAATTCTACTCTCA+TGG | 0.489369 | 6.3:+3734615 | None:intergenic |
| AATGGGATCTTATCAATATG+TGG | 0.489833 | 6.3:-3734669 | MS.gene20655:CDS |
| TCTTTGTGTTGAGAGTGATT+TGG | 0.490017 | 6.3:-3734555 | MS.gene20655:CDS |
| GCAAGAAGATGTTATTCAAT+GGG | 0.490217 | 6.3:-3734686 | MS.gene20655:CDS |
| TGTCCTTGTAATGGAGAGAA+TGG | 0.491168 | 6.3:-3734857 | MS.gene20655:CDS |
| AAGATTAGTAATGTTAGTAA+AGG | 0.491990 | 6.3:-3734524 | MS.gene20655:CDS |
| ATCAAAGGAATTGAAAATGG+TGG | 0.506466 | 6.3:-3734581 | MS.gene20655:CDS |
| AAACAAACAGCACAATCAAA+AGG | 0.507813 | 6.3:+3735070 | None:intergenic |
| ACAAAGATTTGCAGAATCAT+GGG | 0.517329 | 6.3:-3734397 | MS.gene20655:CDS |
| ATTTGGTTATGGCCAAGAAA+GGG | 0.522743 | 6.3:-3734479 | MS.gene20655:CDS |
| GGATCTTATCAATATGTGGT+TGG | 0.530819 | 6.3:-3734665 | MS.gene20655:CDS |
| GATGATCTTAGGGAAGATGA+TGG | 0.535942 | 6.3:-3734881 | MS.gene20655:CDS |
| TGAGGAAGTTGTTGATAAAG+GGG | 0.540146 | 6.3:-3734804 | MS.gene20655:CDS |
| ATTTGCAGAATCATGGGATG+AGG | 0.541198 | 6.3:-3734391 | MS.gene20655:CDS |
| GATGATGGTTGTCCTTGTAA+TGG | 0.542547 | 6.3:-3734866 | MS.gene20655:CDS |
| TCAAAGGAATTGAAAATGGT+GGG | 0.548623 | 6.3:-3734580 | MS.gene20655:CDS |
| TTTAGAAGCTCATAATGGAA+TGG | 0.557904 | 6.3:-3734438 | MS.gene20655:CDS |
| AATCCATTCTCTCCATTACA+AGG | 0.564226 | 6.3:+3734854 | None:intergenic |
| TGAAGTGTTCCTCTACAAAG+AGG | 0.570614 | 6.3:+3734944 | None:intergenic |
| TAGAGAGAATGAAGAAGTAG+GGG | 0.574565 | 6.3:-3734732 | MS.gene20655:CDS |
| GTAGAATTCATCATGATACA+AGG | 0.593018 | 6.3:-3734607 | MS.gene20655:CDS |
| GAAATTCAAGAAGACGAATG+TGG | 0.607434 | 6.3:-3734762 | MS.gene20655:CDS |
| CATGATACAAGGGTTATCAA+AGG | 0.608541 | 6.3:-3734596 | MS.gene20655:CDS |
| TACAACTTATATGAAAAGCA+TGG | 0.613483 | 6.3:+3734999 | None:intergenic |
| TTTGCAGAATCATGGGATGA+GGG | 0.613784 | 6.3:-3734390 | MS.gene20655:CDS |
| TGAAAAGCATGGCTACACAT+AGG | 0.613953 | 6.3:+3735010 | None:intergenic |
| AAGAAGACGAATGTGGAAGT+CGG | 0.638238 | 6.3:-3734755 | MS.gene20655:CDS |
| TCTACATGTCCTCTTTGTAG+AGG | 0.648357 | 6.3:-3734953 | MS.gene20655:CDS |
| TAGAATTCATCATGATACAA+GGG | 0.648957 | 6.3:-3734606 | MS.gene20655:CDS |
| TGTGTTGAGAGTGATTTGGA+AGG | 0.653262 | 6.3:-3734551 | MS.gene20655:CDS |
| CATGGGATGAGGGAAACAGA+CGG | 0.703991 | 6.3:-3734380 | MS.gene20655:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATCTTTGTTAAGATATGA+TGG | + | chr6.3:3735501-3735520 | None:intergenic | 20.0% |
| !! | AAGATTAGTAATGTTAGTAA+AGG | - | chr6.3:3735384-3735403 | MS.gene20655:intron | 20.0% |
| !! | ATATAAGTTGTATAGATACT+TGG | - | chr6.3:3734920-3734939 | MS.gene20655:CDS | 20.0% |
| !! | CATCAAATTTATCAAAAAGA+TGG | - | chr6.3:3734442-3734461 | MS.gene20655:CDS | 20.0% |
| !!! | GTTTTTCTATTTCCAAAATT+TGG | - | chr6.3:3735412-3735431 | MS.gene20655:intron | 20.0% |
| ! | CTATTTCCAAAATTTGGTTA+TGG | - | chr6.3:3735418-3735437 | MS.gene20655:intron | 25.0% |
| ! | GTATGTTCAAATAACAACTT+AGG | + | chr6.3:3734394-3734413 | None:intergenic | 25.0% |
| ! | GTTATCAAAGGAATTGAAAA+TGG | - | chr6.3:3735324-3735343 | MS.gene20655:intron | 25.0% |
| ! | TACAACTTATATGAAAAGCA+TGG | + | chr6.3:3734912-3734931 | None:intergenic | 25.0% |
| ! | TAGAATTCATCATGATACAA+GGG | - | chr6.3:3735302-3735321 | MS.gene20655:intron | 25.0% |
| !! | ACAAAAAGAAATTGTTGTTG+AGG | - | chr6.3:3735086-3735105 | MS.gene20655:CDS | 25.0% |
| AAACAAACAGCACAATCAAA+AGG | + | chr6.3:3734841-3734860 | None:intergenic | 30.0% | |
| AACAAAGATTTGCAGAATCA+TGG | - | chr6.3:3735510-3735529 | MS.gene20655:intron | 30.0% | |
| AATGGGATCTTATCAATATG+TGG | - | chr6.3:3735239-3735258 | MS.gene20655:CDS | 30.0% | |
| AATTCTACTCTCATGGTTTA+AGG | + | chr6.3:3735289-3735308 | None:intergenic | 30.0% | |
| ACAAAGATTTGCAGAATCAT+GGG | - | chr6.3:3735511-3735530 | MS.gene20655:intron | 30.0% | |
| AGATCATCGAAATCGAATAT+CGG | + | chr6.3:3735015-3735034 | None:intergenic | 30.0% | |
| ATCAAAGGAATTGAAAATGG+TGG | - | chr6.3:3735327-3735346 | MS.gene20655:intron | 30.0% | |
| ATCTCCTTGAATTGAAAAAC+AGG | + | chr6.3:3734802-3734821 | None:intergenic | 30.0% | |
| ATTCGATTTCGATGATCTTA+GGG | - | chr6.3:3735017-3735036 | MS.gene20655:CDS | 30.0% | |
| GCAAGAAGATGTTATTCAAT+GGG | - | chr6.3:3735222-3735241 | MS.gene20655:CDS | 30.0% | |
| GGAAACAAGTAGTAGTAATT+TGG | - | chr6.3:3735197-3735216 | MS.gene20655:CDS | 30.0% | |
| GTAGAATTCATCATGATACA+AGG | - | chr6.3:3735301-3735320 | MS.gene20655:intron | 30.0% | |
| TATTCGATTTCGATGATCTT+AGG | - | chr6.3:3735016-3735035 | MS.gene20655:CDS | 30.0% | |
| TCAAAGGAATTGAAAATGGT+GGG | - | chr6.3:3735328-3735347 | MS.gene20655:intron | 30.0% | |
| TTAGAAGAACTTGATGAAGA+TGG | + | chr6.3:3734667-3734686 | None:intergenic | 30.0% | |
| TTAGTACTAGAAGATGAAGA+TGG | + | chr6.3:3734547-3734566 | None:intergenic | 30.0% | |
| TTTCAATTCAAGGAGATTGT+TGG | - | chr6.3:3734805-3734824 | MS.gene20655:CDS | 30.0% | |
| ! | AGTTCTTTAGAAGCTCATAA+TGG | - | chr6.3:3735465-3735484 | MS.gene20655:intron | 30.0% |
| ! | GAAGAAAATTTTCCCTTTCT+TGG | + | chr6.3:3735444-3735463 | None:intergenic | 30.0% |
| ! | TTGAGGAAGTTGTTGATAAA+GGG | - | chr6.3:3735103-3735122 | MS.gene20655:CDS | 30.0% |
| ! | TTTAGAAGCTCATAATGGAA+TGG | - | chr6.3:3735470-3735489 | MS.gene20655:intron | 30.0% |
| !! | ACTACCTGTTTTTCAATTCA+AGG | - | chr6.3:3734795-3734814 | MS.gene20655:CDS | 30.0% |
| !! | CTTTTTCATCTTCATGATTC+TGG | - | chr6.3:3734748-3734767 | MS.gene20655:CDS | 30.0% |
| !!! | GCTGTTTTGTTTTTCATATC+TGG | - | chr6.3:3734604-3734623 | MS.gene20655:CDS | 30.0% |
| AATCCATTCTCTCCATTACA+AGG | + | chr6.3:3735057-3735076 | None:intergenic | 35.0% | |
| AATTTGGTTATGGCCAAGAA+AGG | - | chr6.3:3735428-3735447 | MS.gene20655:intron | 35.0% | |
| ACTATGATGAAAAGAACAGC+TGG | + | chr6.3:3734577-3734596 | None:intergenic | 35.0% | |
| AGAGGAACACTTCAAACTAA+TGG | - | chr6.3:3734973-3734992 | MS.gene20655:CDS | 35.0% | |
| ATTTGGTTATGGCCAAGAAA+GGG | - | chr6.3:3735429-3735448 | MS.gene20655:intron | 35.0% | |
| CATGATACAAGGGTTATCAA+AGG | - | chr6.3:3735312-3735331 | MS.gene20655:intron | 35.0% | |
| CATGATGAATTCTACTCTCA+TGG | + | chr6.3:3735296-3735315 | None:intergenic | 35.0% | |
| CGCAAGAAGATGTTATTCAA+TGG | - | chr6.3:3735221-3735240 | MS.gene20655:CDS | 35.0% | |
| CTTGATGAAGATTGTGATGA+TGG | + | chr6.3:3734490-3734509 | None:intergenic | 35.0% | |
| GAAATTCAAGAAGACGAATG+TGG | - | chr6.3:3735146-3735165 | MS.gene20655:CDS | 35.0% | |
| GGATCTTATCAATATGTGGT+TGG | - | chr6.3:3735243-3735262 | MS.gene20655:CDS | 35.0% | |
| GGTTGGAAATTCAGAGTTAA+GGG | - | chr6.3:3735260-3735279 | MS.gene20655:CDS | 35.0% | |
| GTAGAGAGAATGAAGAAGTA+GGG | - | chr6.3:3735175-3735194 | MS.gene20655:CDS | 35.0% | |
| TAGAGAGAATGAAGAAGTAG+GGG | - | chr6.3:3735176-3735195 | MS.gene20655:CDS | 35.0% | |
| TCTTTGTGTTGAGAGTGATT+TGG | - | chr6.3:3735353-3735372 | MS.gene20655:intron | 35.0% | |
| TGGTTGGAAATTCAGAGTTA+AGG | - | chr6.3:3735259-3735278 | MS.gene20655:CDS | 35.0% | |
| ! | AGCTGTTCTTTTCATCATAG+TGG | - | chr6.3:3734576-3734595 | MS.gene20655:CDS | 35.0% |
| ! | GTTGAGGAAGTTGTTGATAA+AGG | - | chr6.3:3735102-3735121 | MS.gene20655:CDS | 35.0% |
| ! | TCTTGGCCATAACCAAATTT+TGG | + | chr6.3:3735427-3735446 | None:intergenic | 35.0% |
| ! | TGAGGAAGTTGTTGATAAAG+GGG | - | chr6.3:3735104-3735123 | MS.gene20655:CDS | 35.0% |
| ! | TGTAATGGAGAGAATGGATT+TGG | - | chr6.3:3735057-3735076 | MS.gene20655:CDS | 35.0% |
| AAGAAGACGAATGTGGAAGT+CGG | - | chr6.3:3735153-3735172 | MS.gene20655:CDS | 40.0% | |
| ATTTGCAGAATCATGGGATG+AGG | - | chr6.3:3735517-3735536 | MS.gene20655:intron | 40.0% | |
| GATGATCTTAGGGAAGATGA+TGG | - | chr6.3:3735027-3735046 | MS.gene20655:CDS | 40.0% | |
| GGTAGAGAGAATGAAGAAGT+AGG | - | chr6.3:3735174-3735193 | MS.gene20655:CDS | 40.0% | |
| TCAACAACATCAACAGCATC+CGG | - | chr6.3:3734514-3734533 | MS.gene20655:CDS | 40.0% | |
| TCTACATGTCCTCTTTGTAG+AGG | - | chr6.3:3734955-3734974 | MS.gene20655:CDS | 40.0% | |
| TTTGCAGAATCATGGGATGA+GGG | - | chr6.3:3735518-3735537 | MS.gene20655:intron | 40.0% | |
| ! | GATGATGGTTGTCCTTGTAA+TGG | - | chr6.3:3735042-3735061 | MS.gene20655:CDS | 40.0% |
| ! | TGAAAAGCATGGCTACACAT+AGG | + | chr6.3:3734901-3734920 | None:intergenic | 40.0% |
| ! | TGAAGTGTTCCTCTACAAAG+AGG | + | chr6.3:3734967-3734986 | None:intergenic | 40.0% |
| ! | TGTCCTTGTAATGGAGAGAA+TGG | - | chr6.3:3735051-3735070 | MS.gene20655:CDS | 40.0% |
| ! | TGTGTTGAGAGTGATTTGGA+AGG | - | chr6.3:3735357-3735376 | MS.gene20655:intron | 40.0% |
| !! | GATGAAGATTGTGATGATGG+TGG | + | chr6.3:3734487-3734506 | None:intergenic | 40.0% |
| !! | TGTTGATAAAGGGGTTTTGC+CGG | - | chr6.3:3735113-3735132 | MS.gene20655:CDS | 40.0% |
| TTGAATTTCCCGAGTCGAAC+CGG | + | chr6.3:3735135-3735154 | None:intergenic | 45.0% | |
| !! | AGATGAAGATGGTGCTGTTC+CGG | + | chr6.3:3734536-3734555 | None:intergenic | 45.0% |
| !! | GAAGATTGTGATGATGGTGG+TGG | + | chr6.3:3734484-3734503 | None:intergenic | 45.0% |
| CATGGGATGAGGGAAACAGA+CGG | - | chr6.3:3735528-3735547 | MS.gene20655:intron | 50.0% | |
| !!! | GGGGTTTTGCCGGTTCGACT+CGG | - | chr6.3:3735123-3735142 | MS.gene20655:CDS | 60.0% |
| !!! | GGGTTTTGCCGGTTCGACTC+GGG | - | chr6.3:3735124-3735143 | MS.gene20655:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 3734373 | 3735557 | 3734373 | ID=MS.gene20655 |
| chr6.3 | mRNA | 3734373 | 3735557 | 3734373 | ID=MS.gene20655.t1;Parent=MS.gene20655 |
| chr6.3 | exon | 3735544 | 3735557 | 3735544 | ID=MS.gene20655.t1.exon1;Parent=MS.gene20655.t1 |
| chr6.3 | CDS | 3735544 | 3735557 | 3735544 | ID=cds.MS.gene20655.t1;Parent=MS.gene20655.t1 |
| chr6.3 | exon | 3734373 | 3735282 | 3734373 | ID=MS.gene20655.t1.exon2;Parent=MS.gene20655.t1 |
| chr6.3 | CDS | 3734373 | 3735282 | 3734373 | ID=cds.MS.gene20655.t1;Parent=MS.gene20655.t1 |
| Gene Sequence |
| Protein sequence |
