AlfalfaGEDB | MS.gene24429

M. sativa cultivar XinJiangDaYe / MS.gene24429

KEGG: K09286
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00847.23

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24429.t1	XP_003589156.2	94.1	136	6	1	12	145	45	180	8.90E-55	223

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24429.t1	Q9FH94	71.2	104	23	1	5	108	15	111	5.7e-34	145.2

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24429.t1	G7I2D8	94.1	136	6	1	12	145	45	180	6.4e-55	223.0

TFs/TRs:

Gene ID	Type	Classification
MS.gene24429.t1	TF	AP2/ERF-ERF

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049254	MS.gene24429	0.802947	4.40E-49	-1.69E-46
MS.gene049983	MS.gene24429	0.812265	4.63E-51	-1.69E-46
MS.gene050312	MS.gene24429	0.800412	1.46E-48	-1.69E-46
MS.gene050559	MS.gene24429	0.803696	3.08E-49	-1.69E-46
MS.gene050561	MS.gene24429	0.802685	4.99E-49	-1.69E-46
MS.gene050605	MS.gene24429	0.801134	1.04E-48	-1.69E-46
MS.gene050680	MS.gene24429	0.805573	1.25E-49	-1.69E-46
MS.gene050953	MS.gene24429	0.80601	1.01E-49	-1.69E-46
MS.gene051368	MS.gene24429	0.835178	1.95E-56	-1.69E-46
MS.gene051597	MS.gene24429	0.821687	3.54E-53	-1.69E-46
MS.gene052500	MS.gene24429	0.834587	2.75E-56	-1.69E-46
MS.gene052502	MS.gene24429	0.830496	2.84E-55	-1.69E-46
MS.gene052824	MS.gene24429	0.809895	1.51E-50	-1.69E-46
MS.gene052826	MS.gene24429	0.834343	3.17E-56	-1.69E-46
MS.gene052954	MS.gene24429	0.845669	3.51E-59	-1.69E-46
MS.gene053006	MS.gene24429	0.801407	9.14E-49	-1.69E-46
MS.gene053166	MS.gene24429	0.804738	1.87E-49	-1.69E-46
MS.gene053188	MS.gene24429	0.805612	1.23E-49	-1.69E-46
MS.gene053931	MS.gene24429	0.823039	1.72E-53	-1.69E-46
MS.gene054657	MS.gene24429	0.835439	1.68E-56	-1.69E-46
MS.gene05510	MS.gene24429	0.801949	7.07E-49	-1.69E-46
MS.gene055464	MS.gene24429	0.827362	1.63E-54	-1.69E-46
MS.gene055701	MS.gene24429	0.807206	5.66E-50	-1.69E-46
MS.gene055841	MS.gene24429	0.801746	7.79E-49	-1.69E-46
MS.gene057208	MS.gene24429	0.836786	7.63E-57	-1.69E-46
MS.gene058008	MS.gene24429	0.819548	1.10E-52	-1.69E-46
MS.gene058009	MS.gene24429	0.829005	6.55E-55	-1.69E-46
MS.gene058595	MS.gene24429	0.825097	5.64E-54	-1.69E-46
MS.gene058781	MS.gene24429	0.817495	3.20E-52	-1.69E-46
MS.gene058783	MS.gene24429	0.827252	1.73E-54	-1.69E-46
MS.gene058979	MS.gene24429	0.817643	2.96E-52	-1.69E-46
MS.gene059317	MS.gene24429	0.800384	1.48E-48	-1.69E-46
MS.gene060011	MS.gene24429	0.801853	7.40E-49	-1.69E-46
MS.gene060244	MS.gene24429	0.821148	4.71E-53	-1.69E-46
MS.gene060310	MS.gene24429	0.820339	7.23E-53	-1.69E-46
MS.gene060935	MS.gene24429	0.825931	3.58E-54	-1.69E-46
MS.gene060937	MS.gene24429	0.811247	7.70E-51	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24429.t1	MTR_1g019110	97.279	147	2	1	1	145	34	180	8.54e-105	296
MS.gene24429.t1	MTR_3g102100	66.912	136	38	1	9	144	43	171	1.45e-62	189
MS.gene24429.t1	MTR_5g016750	55.195	154	44	3	11	143	25	174	1.36e-48	154
MS.gene24429.t1	MTR_5g012910	69.492	59	18	0	11	69	28	86	1.60e-24	93.2
MS.gene24429.t1	MTR_4g100650	62.121	66	25	0	4	69	67	132	2.45e-24	94.7
MS.gene24429.t1	MTR_2g101340	66.102	59	20	0	11	69	41	99	5.97e-24	92.4
MS.gene24429.t1	MTR_1g014820	65.079	63	22	0	9	71	25	87	8.76e-24	93.2
MS.gene24429.t1	MTR_6g088405	69.492	59	18	0	11	69	44	102	1.09e-23	92.0
MS.gene24429.t1	MTR_3g110205	66.102	59	20	0	11	69	43	101	1.11e-23	91.3
MS.gene24429.t1	MTR_1g014860	67.797	59	19	0	9	67	20	78	1.11e-23	92.0
MS.gene24429.t1	MTR_7g117690	65.517	58	20	0	11	68	28	85	1.23e-23	90.9
MS.gene24429.t1	MTR_5g008790	48.000	100	43	3	9	105	16	109	3.12e-23	89.4
MS.gene24429.t1	MTR_1g014800	66.102	59	20	0	9	67	29	87	3.59e-23	90.9
MS.gene24429.t1	MTR_8g102800	66.102	59	20	0	11	69	37	95	3.83e-23	90.9
MS.gene24429.t1	MTR_1g014780	66.102	59	20	0	9	67	36	94	1.28e-22	89.7
MS.gene24429.t1	MTR_7g046260	66.102	59	20	0	11	69	61	119	4.25e-22	88.2
MS.gene24429.t1	MTR_2g043030	64.912	57	20	0	11	67	19	75	6.14e-22	87.0
MS.gene24429.t1	MTR_2g043040	64.912	57	20	0	11	67	19	75	1.56e-21	86.7
MS.gene24429.t1	MTR_3g105510	58.730	63	26	0	4	66	30	92	2.83e-21	86.3
MS.gene24429.t1	MTR_8g006410	63.333	60	22	0	11	70	52	111	3.06e-21	85.5
MS.gene24429.t1	MTR_7g021010	45.055	91	47	1	1	88	2	92	6.26e-21	82.8
MS.gene24429.t1	MTR_5g062700	46.535	101	43	3	6	106	168	257	8.64e-21	87.0
MS.gene24429.t1	MTR_8g027465	60.345	58	23	0	11	68	39	96	9.96e-21	83.6
MS.gene24429.t1	MTR_7g021010	43.956	91	48	1	1	88	41	131	1.03e-20	83.2
MS.gene24429.t1	MTR_8g013860	61.017	59	23	0	11	69	47	105	1.11e-20	84.0
MS.gene24429.t1	MTR_2g043050	64.912	57	20	0	11	67	19	75	1.42e-20	84.0
MS.gene24429.t1	MTR_2g089170	59.322	59	24	0	11	69	65	123	1.46e-20	83.2
MS.gene24429.t1	MTR_5g083340	62.712	59	22	0	11	69	85	143	1.55e-20	86.7
MS.gene24429.t1	MTR_3g053690	42.063	126	63	3	11	136	27	142	2.16e-20	83.6
MS.gene24429.t1	MTR_1g090170	59.016	61	25	0	9	69	150	210	2.37e-20	85.1
MS.gene24429.t1	MTR_7g092190	62.712	59	22	0	11	69	30	88	2.60e-20	84.7
MS.gene24429.t1	MTR_4g086160	59.649	57	23	0	11	67	96	152	2.91e-20	83.6
MS.gene24429.t1	MTR_4g086165	59.649	57	23	0	11	67	82	138	4.09e-20	82.4
MS.gene24429.t1	MTR_1g101600	59.677	62	25	0	11	72	41	102	4.88e-20	82.0
MS.gene24429.t1	MTR_1g090170	59.016	61	25	0	9	69	237	297	4.98e-20	85.1
MS.gene24429.t1	MTR_4g086220	59.649	57	23	0	11	67	96	152	6.49e-20	82.4
MS.gene24429.t1	MTR_4g035430	50.746	67	33	0	2	68	23	89	6.53e-20	82.4
MS.gene24429.t1	MTR_2g043020	61.404	57	22	0	11	67	19	75	8.29e-20	81.6
MS.gene24429.t1	MTR_4g100420	65.517	58	19	1	11	67	157	214	8.95e-20	83.6
MS.gene24429.t1	MTR_8g092460	50.000	76	38	0	1	76	135	210	1.01e-19	83.2
MS.gene24429.t1	MTR_4g086190	59.649	57	23	0	11	67	96	152	1.22e-19	81.6
MS.gene24429.t1	MTR_7g020980	48.611	72	37	0	1	72	41	112	1.31e-19	80.5
MS.gene24429.t1	MTR_0939s0010	55.932	59	26	0	11	69	65	123	1.58e-19	80.9
MS.gene24429.t1	MTR_4g100450	63.793	58	20	1	11	67	154	211	1.71e-19	82.8
MS.gene24429.t1	MTR_3g074130	59.375	64	26	0	6	69	145	208	2.19e-19	82.8
MS.gene24429.t1	MTR_8g090350	56.061	66	29	0	6	71	108	173	3.89e-19	81.3
MS.gene24429.t1	MTR_1g048610	55.072	69	30	1	9	76	87	155	4.41e-19	80.5
MS.gene24429.t1	MTR_2g090235	59.016	61	25	0	11	71	218	278	6.18e-19	82.0
MS.gene24429.t1	MTR_3g105480	62.963	54	20	0	13	66	33	86	1.03e-18	79.3
MS.gene24429.t1	MTR_2g435590	60.345	58	23	0	11	68	96	153	1.13e-18	79.7
MS.gene24429.t1	MTR_7g081795	52.632	76	32	2	2	73	48	123	1.38e-18	78.6
MS.gene24429.t1	MTR_5g008470	58.333	60	25	0	13	72	77	136	2.91e-18	77.0
MS.gene24429.t1	MTR_1g070070	58.621	58	23	1	11	67	21	78	2.96e-18	76.3
MS.gene24429.t1	MTR_7g081815	52.113	71	33	1	9	78	59	129	3.08e-18	77.8
MS.gene24429.t1	MTR_5g008590	49.505	101	42	2	11	111	11	102	3.22e-18	77.0
MS.gene24429.t1	MTR_6g465530	40.187	107	60	2	2	104	23	129	3.24e-18	77.4
MS.gene24429.t1	MTR_1g090290	50.725	69	31	2	2	67	102	170	4.32e-18	77.0
MS.gene24429.t1	MTR_7g028925	61.017	59	20	1	9	67	27	82	5.01e-18	74.3
MS.gene24429.t1	MTR_8g006815	53.731	67	30	1	11	76	96	162	6.37e-18	76.6
MS.gene24429.t1	MTR_7g081805	54.545	66	29	1	9	73	59	124	7.07e-18	76.6
MS.gene24429.t1	MTR_6g465420	39.394	99	57	1	11	106	54	152	7.76e-18	77.8
MS.gene24429.t1	MTR_2g014340	56.140	57	25	0	11	67	19	75	8.73e-18	76.3
MS.gene24429.t1	MTR_4g078710	56.140	57	25	0	11	67	28	84	9.77e-18	76.6
MS.gene24429.t1	MTR_1g087920	53.731	67	29	1	1	67	69	133	1.25e-17	77.4
MS.gene24429.t1	MTR_2g105380	58.621	58	24	0	11	68	117	174	1.57e-17	77.8
MS.gene24429.t1	MTR_5g008550	51.136	88	35	1	11	98	21	100	2.04e-17	75.1
MS.gene24429.t1	MTR_8g022820	58.621	58	24	0	11	68	123	180	3.34e-17	77.0
MS.gene24429.t1	MTR_8g022820	58.621	58	24	0	11	68	124	181	3.49e-17	77.0
MS.gene24429.t1	MTR_8g022820	58.621	58	24	0	11	68	124	181	3.49e-17	77.0
MS.gene24429.t1	MTR_4g008860	56.140	57	25	0	11	67	8	64	4.31e-17	74.3
MS.gene24429.t1	MTR_6g465450	53.226	62	29	0	11	72	54	115	4.58e-17	75.1
MS.gene24429.t1	MTR_5g082950	60.714	56	22	0	11	66	66	121	5.27e-17	76.3
MS.gene24429.t1	MTR_5g083330	57.627	59	25	0	11	69	35	93	5.48e-17	75.9
MS.gene24429.t1	MTR_8g006840	54.688	64	28	1	11	73	125	188	7.13e-17	73.9
MS.gene24429.t1	MTR_8g006825	55.556	63	27	1	9	70	94	156	7.22e-17	73.9
MS.gene24429.t1	MTR_6g088425	64.407	59	21	0	11	69	49	107	7.31e-17	74.7
MS.gene24429.t1	MTR_1g074310	58.621	58	23	1	11	67	21	78	7.40e-17	72.4
MS.gene24429.t1	MTR_3g090760	55.172	58	26	0	9	66	111	168	7.63e-17	75.9
MS.gene24429.t1	MTR_6g465510	51.389	72	34	1	2	72	23	94	8.05e-17	73.9
MS.gene24429.t1	MTR_1g074230	58.621	58	23	1	11	67	19	76	9.07e-17	72.0
MS.gene24429.t1	MTR_6g466130	52.941	68	31	1	2	68	56	123	9.55e-17	73.9
MS.gene24429.t1	MTR_6g465430	37.374	99	59	1	11	106	54	152	1.05e-16	74.3
MS.gene24429.t1	MTR_1g028560	55.357	56	25	0	11	66	115	170	1.38e-16	75.1
MS.gene24429.t1	MTR_5g008540	47.761	67	35	0	13	79	26	92	1.55e-16	70.5
MS.gene24429.t1	MTR_2g078680	53.333	60	28	0	11	70	31	90	1.90e-16	72.8
MS.gene24429.t1	MTR_2g015050	52.239	67	31	1	2	67	125	191	2.00e-16	73.9
MS.gene24429.t1	MTR_1g006660	64.407	59	21	0	11	69	47	105	2.27e-16	73.6
MS.gene24429.t1	MTR_6g466000	42.000	100	49	2	2	100	47	138	2.62e-16	72.8
MS.gene24429.t1	MTR_7g096750	54.839	62	27	1	11	71	20	81	2.85e-16	70.9
MS.gene24429.t1	MTR_5g009620	55.172	58	26	0	9	66	110	167	3.17e-16	73.9
MS.gene24429.t1	MTR_4g114570	50.847	59	29	0	9	67	5	63	3.41e-16	72.4
MS.gene24429.t1	MTR_6g465690	52.941	68	31	1	2	68	53	120	3.59e-16	73.2
MS.gene24429.t1	MTR_3g072610	63.934	61	20	1	9	67	23	83	3.64e-16	72.4
MS.gene24429.t1	MTR_5g058470	66.667	60	19	1	9	67	94	153	3.91e-16	73.6
MS.gene24429.t1	MTR_6g465850	53.448	58	27	0	11	68	63	120	4.32e-16	73.2
MS.gene24429.t1	MTR_4g010640	50.847	59	29	0	9	67	5	63	4.64e-16	72.0
MS.gene24429.t1	MTR_2g085015	60.000	60	22	2	11	68	47	106	4.89e-16	72.0
MS.gene24429.t1	MTR_6g466020	51.471	68	32	1	2	68	33	100	5.17e-16	71.2
MS.gene24429.t1	MTR_2g014300	56.140	57	25	0	11	67	15	71	5.46e-16	70.9
MS.gene24429.t1	MTR_7g096700	56.897	58	24	1	11	67	20	77	6.90e-16	70.1
MS.gene24429.t1	MTR_4g088005	55.000	60	26	1	9	67	55	114	7.23e-16	69.3
MS.gene24429.t1	MTR_3g106290	54.386	57	26	0	11	67	8	64	8.77e-16	70.9
MS.gene24429.t1	MTR_6g465460	36.364	99	60	1	11	106	54	152	9.47e-16	72.0
MS.gene24429.t1	MTR_2g438180	54.839	62	27	1	11	71	14	75	1.04e-15	69.3
MS.gene24429.t1	MTR_2g015040	53.226	62	28	1	7	67	59	120	1.39e-15	69.7
MS.gene24429.t1	MTR_7g070220	53.968	63	22	1	11	66	78	140	1.41e-15	72.8
MS.gene24429.t1	MTR_4g102670	61.404	57	21	1	11	67	15	70	1.52e-15	69.7
MS.gene24429.t1	MTR_2g103700	49.153	59	30	0	9	67	5	63	1.84e-15	69.7
MS.gene24429.t1	MTR_4g054740	50.000	64	31	1	11	73	97	160	3.15e-15	70.1
MS.gene24429.t1	MTR_5g010940	54.688	64	23	1	11	68	54	117	3.41e-15	70.1
MS.gene24429.t1	MTR_5g010910	54.688	64	23	1	11	68	49	112	6.44e-15	69.3
MS.gene24429.t1	MTR_4g054360	50.000	64	31	1	11	73	124	187	6.60e-15	69.7
MS.gene24429.t1	MTR_5g010930	41.905	105	46	3	11	109	49	144	1.07e-14	68.6
MS.gene24429.t1	MTR_8g032610	45.833	72	39	0	2	73	18	89	1.65e-14	68.9
MS.gene24429.t1	MTR_5g085070	52.632	57	27	0	11	67	51	107	1.86e-14	68.6
MS.gene24429.t1	MTR_5g085100	50.877	57	28	0	11	67	46	102	2.49e-14	68.6
MS.gene24429.t1	MTR_5g075570	41.667	72	42	0	11	82	124	195	2.57e-14	68.2
MS.gene24429.t1	MTR_3g095190	57.576	66	28	0	3	68	162	227	2.67e-14	68.9
MS.gene24429.t1	MTR_4g100380	55.172	58	25	1	11	67	145	202	3.30e-14	67.8
MS.gene24429.t1	MTR_4g054860	50.794	63	30	1	12	73	132	194	3.48e-14	67.8
MS.gene24429.t1	MTR_8g099215	53.448	58	27	0	9	66	105	162	5.21e-14	67.8
MS.gene24429.t1	MTR_3g112440	60.000	60	24	0	10	69	38	97	5.72e-14	66.6
MS.gene24429.t1	MTR_1g040430	56.000	50	21	1	19	67	119	168	6.98e-14	65.9
MS.gene24429.t1	MTR_8g085960	50.000	66	30	1	4	66	15	80	1.26e-13	65.9
MS.gene24429.t1	MTR_3g098580	58.621	58	24	0	11	68	76	133	1.29e-13	66.2
MS.gene24429.t1	MTR_1g069985	50.847	59	28	1	9	66	73	131	1.30e-13	65.5
MS.gene24429.t1	MTR_1g074250	50.847	59	27	1	11	67	19	77	1.44e-13	63.5
MS.gene24429.t1	MTR_4g082345	50.000	62	31	0	5	66	42	103	1.46e-13	66.6
MS.gene24429.t1	MTR_8g069360	50.000	56	28	0	11	66	44	99	1.49e-13	67.0
MS.gene24429.t1	MTR_2g019750	30.657	137	88	3	2	134	39	172	1.55e-13	66.2
MS.gene24429.t1	MTR_7g011630	46.032	63	34	0	4	66	35	97	2.89e-13	66.2
MS.gene24429.t1	MTR_1g023170	59.322	59	24	0	11	69	40	98	3.74e-13	65.1
MS.gene24429.t1	MTR_1g070035	49.153	59	29	1	9	66	75	133	4.25e-13	64.3
MS.gene24429.t1	MTR_7g096810	59.375	64	25	1	5	67	7	70	5.67e-13	62.0
MS.gene24429.t1	MTR_1g012470	50.704	71	33	1	11	81	7	75	9.83e-13	62.8
MS.gene24429.t1	MTR_4g102660	57.377	61	23	2	11	68	44	104	1.23e-12	63.2
MS.gene24429.t1	MTR_6g012970	43.548	62	35	0	5	66	32	93	1.45e-12	63.9
MS.gene24429.t1	MTR_5g032820	50.000	56	28	0	11	66	46	101	1.52e-12	63.9
MS.gene24429.t1	MTR_4g111915	44.068	59	33	0	9	67	51	109	2.03e-12	60.8
MS.gene24429.t1	MTR_2g016730	44.615	65	36	0	2	66	14	78	2.16e-12	63.2
MS.gene24429.t1	MTR_5g009410	63.934	61	22	0	9	69	115	175	2.53e-12	63.2
MS.gene24429.t1	MTR_7g085810	46.429	56	30	0	11	66	30	85	3.71e-12	62.0
MS.gene24429.t1	MTR_1g070045	46.875	64	33	1	4	66	59	122	4.02e-12	60.8
MS.gene24429.t1	MTR_1g070015	49.123	57	28	1	11	66	84	140	4.18e-12	61.6
MS.gene24429.t1	MTR_1g070020	45.312	64	34	1	4	66	63	126	4.31e-12	61.6
MS.gene24429.t1	MTR_8g023680	50.000	48	24	0	5	52	110	157	4.70e-12	62.4
MS.gene24429.t1	MTR_8g023700	57.143	42	18	0	11	52	117	158	5.27e-12	62.4
MS.gene24429.t1	MTR_6g033255	56.667	60	26	0	11	70	20	79	6.42e-12	60.8
MS.gene24429.t1	MTR_4g112490	44.068	59	33	0	9	67	51	109	7.99e-12	60.5
MS.gene24429.t1	MTR_1g069960	60.345	58	22	1	11	67	27	84	9.35e-12	59.3
MS.gene24429.t1	MTR_1g070000	49.091	55	27	1	13	66	86	140	1.39e-11	60.1
MS.gene24429.t1	MTR_1g069945	47.945	73	37	1	9	80	99	171	1.46e-11	60.5
MS.gene24429.t1	MTR_1g101550	57.377	61	25	1	11	71	57	116	2.61e-11	59.7
MS.gene24429.t1	MTR_4g119270	44.643	56	31	0	11	66	53	108	3.01e-11	60.1
MS.gene24429.t1	MTR_3g107380	50.725	69	32	1	9	77	6	72	3.01e-11	58.9
MS.gene24429.t1	MTR_1g105400	47.059	51	27	0	2	52	106	156	6.04e-11	59.3
MS.gene24429.t1	MTR_5g057810	59.524	42	17	0	11	52	88	129	8.32e-11	58.5
MS.gene24429.t1	MTR_5g057647	59.524	42	17	0	11	52	88	129	8.32e-11	58.5
MS.gene24429.t1	MTR_1g069940	46.575	73	38	1	9	80	93	165	9.94e-11	58.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24429.t1	AT2G23340	56.552	145	56	2	5	144	22	164	4.51e-50	158
MS.gene24429.t1	AT3G50260	58.621	145	45	4	1	144	15	145	2.80e-49	155
MS.gene24429.t1	AT1G46768	57.664	137	46	2	9	145	29	153	2.80e-49	155
MS.gene24429.t1	AT1G46768	57.664	137	46	2	9	145	29	153	2.80e-49	155
MS.gene24429.t1	AT5G67190	66.102	118	32	2	5	122	15	124	2.37e-48	154
MS.gene24429.t1	AT1G46768	64.035	114	39	1	9	122	29	140	5.21e-47	149
MS.gene24429.t1	AT4G36900	50.000	168	55	3	5	143	24	191	1.73e-45	147
MS.gene24429.t1	AT4G06746	74.227	97	22	1	9	105	34	127	2.22e-44	143
MS.gene24429.t1	AT1G71450	42.857	126	54	2	11	136	24	131	2.35e-26	98.2
MS.gene24429.t1	AT1G21910	52.083	96	33	3	11	100	50	138	3.19e-25	96.3
MS.gene24429.t1	AT4G16750	63.934	61	22	0	11	71	40	100	8.20e-25	94.0
MS.gene24429.t1	AT2G35700	62.295	61	23	0	11	71	45	105	2.26e-23	90.9
MS.gene24429.t1	AT1G74930	64.179	67	23	1	2	67	11	77	2.54e-23	90.5
MS.gene24429.t1	AT4G32800	60.294	68	27	0	2	69	10	77	2.75e-23	91.3
MS.gene24429.t1	AT5G11590	66.102	59	20	0	11	69	51	109	3.14e-23	91.3
MS.gene24429.t1	AT3G16280	62.712	59	22	0	11	69	79	137	4.88e-23	91.3
MS.gene24429.t1	AT3G16280	62.712	59	22	0	11	69	61	119	5.00e-23	90.9
MS.gene24429.t1	AT1G19210	57.971	69	28	1	1	68	1	69	7.02e-23	89.4
MS.gene24429.t1	AT2G20880	51.111	90	42	1	7	94	183	272	1.44e-22	91.3
MS.gene24429.t1	AT3G60490	66.102	59	20	0	11	69	71	129	2.41e-22	89.4
MS.gene24429.t1	AT1G01250	65.517	58	20	0	11	68	45	102	3.24e-22	87.8
MS.gene24429.t1	AT2G44940	64.407	59	21	0	11	69	100	158	3.33e-22	89.7
MS.gene24429.t1	AT2G25820	66.102	59	20	0	11	69	26	84	5.91e-22	87.8
MS.gene24429.t1	AT2G22200	48.810	84	43	0	11	94	71	154	1.78e-21	87.4
MS.gene24429.t1	AT5G25810	62.712	59	22	0	11	69	36	94	1.96e-21	86.3
MS.gene24429.t1	AT5G21960	63.793	58	21	0	11	68	7	64	3.01e-21	85.9
MS.gene24429.t1	AT4G28140	62.903	62	23	0	7	68	139	200	6.93e-21	86.3
MS.gene24429.t1	AT2G33710	62.069	58	22	0	11	68	70	127	7.71e-21	84.7
MS.gene24429.t1	AT2G33710	62.069	58	22	0	11	68	70	127	7.89e-21	85.1
MS.gene24429.t1	AT1G71520	45.455	99	41	2	11	105	14	103	7.96e-21	82.8
MS.gene24429.t1	AT2G47520	50.588	85	36	2	2	86	43	121	8.09e-21	83.6
MS.gene24429.t1	AT1G36060	46.602	103	42	2	6	106	138	229	9.33e-21	86.3
MS.gene24429.t1	AT4G39780	54.930	71	32	0	3	73	85	155	1.56e-20	85.1
MS.gene24429.t1	AT4G13620	62.295	61	23	0	9	69	230	290	1.57e-20	86.3
MS.gene24429.t1	AT4G27950	37.857	140	67	3	9	143	116	240	2.08e-20	85.5
MS.gene24429.t1	AT1G77640	50.000	96	46	1	5	100	37	130	2.56e-20	84.0
MS.gene24429.t1	AT1G22190	54.930	71	32	0	6	76	78	148	3.10e-20	84.0
MS.gene24429.t1	AT5G65130	54.795	73	30	1	1	70	98	170	3.77e-20	84.0
MS.gene24429.t1	AT5G65130	54.795	73	30	1	1	70	100	172	3.84e-20	84.0
MS.gene24429.t1	AT5G47230	45.918	98	50	2	11	105	156	253	4.80e-20	84.0
MS.gene24429.t1	AT4G31060	57.812	64	27	0	4	67	20	83	6.80e-20	81.6
MS.gene24429.t1	AT1G75490	60.000	60	24	0	11	70	42	101	7.78e-20	81.6
MS.gene24429.t1	AT1G22810	45.361	97	42	2	11	105	14	101	1.33e-19	79.7
MS.gene24429.t1	AT3G57600	58.462	65	27	0	5	69	22	86	1.43e-19	82.4
MS.gene24429.t1	AT1G33760	70.000	60	18	0	11	70	20	79	2.17e-19	80.1
MS.gene24429.t1	AT1G78080	59.375	64	26	0	6	69	147	210	4.04e-19	82.0
MS.gene24429.t1	AT4G11140	57.895	57	24	0	11	67	87	143	4.87e-19	81.3
MS.gene24429.t1	AT2G44840	58.209	67	26	2	5	70	87	152	5.68e-19	80.1
MS.gene24429.t1	AT5G05410	61.404	57	22	0	11	67	79	135	7.74e-19	80.9
MS.gene24429.t1	AT5G61600	63.793	58	20	1	11	67	88	145	8.29e-19	79.7
MS.gene24429.t1	AT5G05410	61.404	57	22	0	11	67	79	135	9.18e-19	80.9
MS.gene24429.t1	AT1G77200	61.765	68	26	0	2	69	34	101	9.45e-19	79.7
MS.gene24429.t1	AT5G51190	60.345	58	22	1	11	67	72	129	1.05e-18	79.3
MS.gene24429.t1	AT4G25480	55.882	68	29	1	2	68	41	108	1.34e-18	79.0
MS.gene24429.t1	AT5G07580	62.069	58	21	1	11	67	110	167	1.37e-18	78.6
MS.gene24429.t1	AT3G20310	59.649	57	23	0	11	67	27	83	1.44e-18	79.3
MS.gene24429.t1	AT5G51990	64.286	56	20	0	11	66	54	109	1.75e-18	78.6
MS.gene24429.t1	AT4G25490	62.500	56	21	0	11	66	48	103	1.77e-18	78.6
MS.gene24429.t1	AT4G25470	60.345	58	23	0	11	68	51	108	1.93e-18	78.6
MS.gene24429.t1	AT3G16770	55.224	67	30	0	3	69	71	137	1.94e-18	79.0
MS.gene24429.t1	AT4G17490	62.069	58	21	1	11	67	137	194	2.17e-18	79.3
MS.gene24429.t1	AT2G40340	50.769	65	32	0	5	69	8	72	2.29e-18	79.3
MS.gene24429.t1	AT2G40340	50.769	65	32	0	5	69	8	72	2.29e-18	79.3
MS.gene24429.t1	AT2G40340	50.769	65	32	0	5	69	8	72	2.29e-18	79.3
MS.gene24429.t1	AT5G61890	56.897	58	25	0	11	68	90	147	2.60e-18	78.6
MS.gene24429.t1	AT5G13330	56.897	58	25	0	11	68	39	96	3.15e-18	77.8
MS.gene24429.t1	AT3G15210	53.030	66	30	1	11	75	25	90	3.24e-18	77.8
MS.gene24429.t1	AT1G44830	66.667	63	20	1	8	69	32	94	3.81e-18	77.4
MS.gene24429.t1	AT2G40340	35.714	126	77	2	11	136	72	193	6.00e-18	79.0
MS.gene24429.t1	AT2G40340	35.714	126	77	2	11	136	79	200	6.13e-18	79.0
MS.gene24429.t1	AT2G40340	55.932	59	26	0	11	69	72	130	7.29e-18	78.2
MS.gene24429.t1	AT3G61630	56.897	58	25	0	9	66	103	160	7.33e-18	78.6
MS.gene24429.t1	AT1G28360	53.968	63	29	0	11	73	12	74	2.11e-17	75.1
MS.gene24429.t1	AT4G23750	58.621	58	24	0	9	66	120	177	2.14e-17	77.4
MS.gene24429.t1	AT4G23750	58.621	58	24	0	9	66	120	177	2.14e-17	77.4
MS.gene24429.t1	AT1G03800	52.459	61	29	0	11	71	53	113	2.68e-17	75.9
MS.gene24429.t1	AT5G25390	52.542	59	28	0	9	67	5	63	2.78e-17	74.7
MS.gene24429.t1	AT5G53290	55.932	59	26	0	8	66	122	180	3.76e-17	76.6
MS.gene24429.t1	AT1G28370	56.140	57	25	0	11	67	20	76	4.43e-17	73.6
MS.gene24429.t1	AT1G28370	56.140	57	25	0	11	67	58	114	5.79e-17	74.3
MS.gene24429.t1	AT5G18450	55.000	60	27	0	7	66	30	89	6.19e-17	75.9
MS.gene24429.t1	AT1G72360	53.968	63	29	0	5	67	19	81	6.83e-17	74.3
MS.gene24429.t1	AT5G44210	54.386	57	26	0	11	67	33	89	7.31e-17	73.9
MS.gene24429.t1	AT1G15360	54.237	59	27	0	9	67	5	63	8.87e-17	73.6
MS.gene24429.t1	AT1G15360	54.237	59	27	0	9	67	5	63	8.87e-17	73.6
MS.gene24429.t1	AT1G72360	53.968	63	29	0	5	67	68	130	9.85e-17	74.7
MS.gene24429.t1	AT1G72360	53.968	63	29	0	5	67	70	132	1.01e-16	74.7
MS.gene24429.t1	AT5G25190	54.386	57	26	0	11	67	8	64	1.45e-16	72.8
MS.gene24429.t1	AT1G12610	62.500	56	21	0	11	66	30	85	3.40e-16	72.4
MS.gene24429.t1	AT2G36450	60.345	58	22	1	11	67	15	72	3.41e-16	71.6
MS.gene24429.t1	AT3G11020	55.172	58	26	0	11	68	78	135	4.93e-16	73.6
MS.gene24429.t1	AT1G63030	42.222	90	44	1	11	100	30	111	4.96e-16	71.2
MS.gene24429.t1	AT1G63030	42.222	90	44	1	11	100	30	111	4.96e-16	71.2
MS.gene24429.t1	AT1G50640	54.386	57	26	0	11	67	28	84	5.18e-16	72.0
MS.gene24429.t1	AT5G47220	56.667	60	25	1	9	67	115	174	9.34e-16	71.6
MS.gene24429.t1	AT3G23230	56.897	58	24	1	11	67	20	77	9.49e-16	69.7
MS.gene24429.t1	AT5G43410	55.172	58	25	1	11	67	15	72	1.02e-15	69.3
MS.gene24429.t1	AT2G40350	52.542	59	28	0	11	69	74	132	1.51e-15	69.7
MS.gene24429.t1	AT2G40350	52.542	59	28	0	11	69	67	125	1.74e-15	69.3
MS.gene24429.t1	AT2G38340	49.351	77	31	1	11	79	70	146	3.55e-15	70.1
MS.gene24429.t1	AT4G17500	56.667	60	25	1	9	67	146	205	6.77e-15	69.7
MS.gene24429.t1	AT3G23240	50.794	63	30	1	5	66	76	138	1.01e-14	68.6
MS.gene24429.t1	AT5G25390	50.847	59	26	1	9	67	5	60	1.14e-14	67.8
MS.gene24429.t1	AT1G43160	61.667	60	23	0	9	68	59	118	1.31e-14	67.8
MS.gene24429.t1	AT2G46310	47.541	61	32	0	6	66	94	154	1.54e-14	68.9
MS.gene24429.t1	AT1G71130	48.148	81	35	2	3	78	71	149	2.08e-14	66.6
MS.gene24429.t1	AT5G64750	58.000	50	21	0	19	68	193	242	6.34e-14	67.8
MS.gene24429.t1	AT5G52020	60.656	61	23	1	11	71	65	124	7.16e-14	66.6
MS.gene24429.t1	AT5G50080	57.576	66	26	1	3	68	80	143	1.43e-13	65.9
MS.gene24429.t1	AT5G50080	57.576	66	26	1	3	68	71	134	1.79e-13	65.5
MS.gene24429.t1	AT5G07310	58.621	58	24	0	11	68	92	149	2.70e-13	65.5
MS.gene24429.t1	AT2G31230	41.892	74	42	1	9	81	84	157	3.83e-13	64.7
MS.gene24429.t1	AT1G53910	35.338	133	79	2	11	139	123	252	5.31e-13	65.1
MS.gene24429.t1	AT1G53910	35.338	133	79	2	11	139	125	254	5.78e-13	65.1
MS.gene24429.t1	AT1G53910	35.338	133	79	2	11	139	125	254	5.78e-13	65.1
MS.gene24429.t1	AT2G40220	64.286	56	20	0	11	66	55	110	9.82e-13	64.3
MS.gene24429.t1	AT1G64380	60.563	71	26	1	6	76	131	199	1.07e-12	64.3
MS.gene24429.t1	AT4G34410	57.895	57	24	0	11	67	136	192	1.72e-12	63.2
MS.gene24429.t1	AT1G12980	50.000	56	28	0	11	66	57	112	2.55e-12	63.2
MS.gene24429.t1	AT5G61590	63.793	58	20	1	11	67	107	164	2.98e-12	61.6
MS.gene24429.t1	AT1G22985	50.820	61	27	1	9	66	73	133	3.30e-12	60.8
MS.gene24429.t1	AT5G19790	44.615	65	36	0	2	66	13	77	5.93e-12	61.6
MS.gene24429.t1	AT1G24590	50.000	56	28	0	11	66	58	113	7.48e-12	61.6
MS.gene24429.t1	AT5G18560	46.429	56	30	0	11	66	55	110	8.12e-12	61.6
MS.gene24429.t1	AT3G14230	62.069	58	22	0	11	68	124	181	8.23e-12	62.0
MS.gene24429.t1	AT3G14230	62.069	58	22	0	11	68	123	180	8.38e-12	62.0
MS.gene24429.t1	AT3G14230	62.069	58	22	0	11	68	128	185	9.67e-12	61.6
MS.gene24429.t1	AT1G68550	61.538	39	15	0	13	51	115	153	1.22e-11	61.2
MS.gene24429.t1	AT1G68550	61.538	39	15	0	13	51	115	153	1.22e-11	61.2
MS.gene24429.t1	AT1G28160	48.214	56	29	0	11	66	39	94	2.59e-11	59.7
MS.gene24429.t1	AT1G12890	45.455	66	35	1	2	66	11	76	2.78e-11	59.3
MS.gene24429.t1	AT5G13910	41.538	65	38	0	2	66	11	75	3.89e-11	58.9

Find 25 sgRNAs with CRISPR-Local

Find 27 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GATCAACAATCTTCAGGTTT+TGG	0.213321	1.1:+3944155	None:intergenic
CAAACAAGAGATCAAGAATT+TGG	0.229206	1.1:-3944487	MS.gene24429:CDS
CTCATCCTTATTCCTCTATA+TGG	0.230567	1.1:+3944545	None:intergenic
ACAACAGTTCTGGAAAATTA+AGG	0.258743	1.1:+3944384	None:intergenic
ATTGGAGTGAACATGATTAT+TGG	0.266059	1.1:+3944214	None:intergenic
TTTGAGAGAAGAAGTAGAAT+TGG	0.281114	1.1:+3944196	None:intergenic
CAAATTCTTGATCTCTTGTT+TGG	0.310510	1.1:+3944488	None:intergenic
TTGCATGATCAACAATCTTC+AGG	0.324330	1.1:+3944149	None:intergenic
TGGTCTTTGAACAACAGTTC+TGG	0.346041	1.1:+3944374	None:intergenic
TGAAACCATATAGAGGAATA+AGG	0.368718	1.1:-3944550	MS.gene24429:CDS
ATATGTCGGCTGATTCAATA+AGG	0.409220	1.1:-3944316	MS.gene24429:CDS
AAGAGATCAAGAATTTGGTT+AGG	0.437115	1.1:-3944482	MS.gene24429:CDS
GAGGAATAAGGATGAGAAAG+TGG	0.441232	1.1:-3944538	MS.gene24429:CDS
TTTGGAAACTCATTCAAGTC+AGG	0.457299	1.1:+3944173	None:intergenic
GATGAGAAAGTGGGGTAAGT+GGG	0.457552	1.1:-3944528	MS.gene24429:CDS
TAAGCACGTGCAGCAGCAAT+AGG	0.459867	1.1:+3944446	None:intergenic
AGGAATAAGGATGAGAAAGT+GGG	0.476638	1.1:-3944537	MS.gene24429:CDS
GGATGAGAAAGTGGGGTAAG+TGG	0.483953	1.1:-3944529	MS.gene24429:CDS
AAAGCTATGAAACCATATAG+AGG	0.522157	1.1:-3944557	MS.gene24429:CDS
GAGAAAGTGGGGTAAGTGGG+TGG	0.554706	1.1:-3944525	MS.gene24429:CDS
GGAAAATTAAGGTTTGCAGA+AGG	0.579289	1.1:+3944395	None:intergenic
GGAATAAGGATGAGAAAGTG+GGG	0.610907	1.1:-3944536	MS.gene24429:CDS
ACAACAACGTGGGAATATGT+CGG	0.633780	1.1:-3944330	MS.gene24429:CDS
AAGAAAATCTACAACAACGT+GGG	0.641819	1.1:-3944340	MS.gene24429:CDS
GAAGAAAATCTACAACAACG+TGG	0.766530	1.1:-3944341	MS.gene24429:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
	AAAGCTATGAAACCATATAG+AGG	-	chr1.1:3944172-3944191	MS.gene24429:CDS	30.0%
	AAGAAAATCTACAACAACGT+GGG	-	chr1.1:3944389-3944408	MS.gene24429:CDS	30.0%
	AAGAGATCAAGAATTTGGTT+AGG	-	chr1.1:3944247-3944266	MS.gene24429:CDS	30.0%
	ATTGGAGTGAACATGATTAT+TGG	+	chr1.1:3944518-3944537	None:intergenic	30.0%
	CAAACAAGAGATCAAGAATT+TGG	-	chr1.1:3944242-3944261	MS.gene24429:CDS	30.0%
	CAAATTCTTGATCTCTTGTT+TGG	+	chr1.1:3944244-3944263	None:intergenic	30.0%
	TGAAACCATATAGAGGAATA+AGG	-	chr1.1:3944179-3944198	MS.gene24429:CDS	30.0%
	TTTGAGAGAAGAAGTAGAAT+TGG	+	chr1.1:3944536-3944555	None:intergenic	30.0%
!	GATTTTCTTCATCTTCTTGT+TGG	+	chr1.1:3944378-3944397	None:intergenic	30.0%
!!	ACAACAGTTCTGGAAAATTA+AGG	+	chr1.1:3944348-3944367	None:intergenic	30.0%
	AGGAAAAAAGCTACACAAGT+TGG	-	chr1.1:3944433-3944452	MS.gene24429:CDS	35.0%
	AGGAATAAGGATGAGAAAGT+GGG	-	chr1.1:3944192-3944211	MS.gene24429:CDS	35.0%
	CTCATCCTTATTCCTCTATA+TGG	+	chr1.1:3944187-3944206	None:intergenic	35.0%
	GAAGAAAATCTACAACAACG+TGG	-	chr1.1:3944388-3944407	MS.gene24429:CDS	35.0%
	GGAAAATTAAGGTTTGCAGA+AGG	+	chr1.1:3944337-3944356	None:intergenic	35.0%
	TTTGGAAACTCATTCAAGTC+AGG	+	chr1.1:3944559-3944578	None:intergenic	35.0%
!	ACTGCTGTGTTTTATCTTAG+AGG	-	chr1.1:3944310-3944329	MS.gene24429:CDS	35.0%
!	ATATGTCGGCTGATTCAATA+AGG	-	chr1.1:3944413-3944432	MS.gene24429:CDS	35.0%
!	CTGCTGTGTTTTATCTTAGA+GGG	-	chr1.1:3944311-3944330	MS.gene24429:CDS	35.0%
	ACAACAACGTGGGAATATGT+CGG	-	chr1.1:3944399-3944418	MS.gene24429:CDS	40.0%
	GAGGAATAAGGATGAGAAAG+TGG	-	chr1.1:3944191-3944210	MS.gene24429:CDS	40.0%
	GGAATAAGGATGAGAAAGTG+GGG	-	chr1.1:3944193-3944212	MS.gene24429:CDS	40.0%
	TGGTCTTTGAACAACAGTTC+TGG	+	chr1.1:3944358-3944377	None:intergenic	40.0%
	GATGAGAAAGTGGGGTAAGT+GGG	-	chr1.1:3944201-3944220	MS.gene24429:CDS	45.0%
	GGATGAGAAAGTGGGGTAAG+TGG	-	chr1.1:3944200-3944219	MS.gene24429:CDS	50.0%
	TAAGCACGTGCAGCAGCAAT+AGG	+	chr1.1:3944286-3944305	None:intergenic	50.0%
	GAGAAAGTGGGGTAAGTGGG+TGG	-	chr1.1:3944204-3944223	MS.gene24429:CDS	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	3944157	3944594	3944157	ID=MS.gene24429
chr1.1	mRNA	3944157	3944594	3944157	ID=MS.gene24429.t1;Parent=MS.gene24429
chr1.1	exon	3944157	3944594	3944157	ID=MS.gene24429.t1.exon1;Parent=MS.gene24429.t1
chr1.1	CDS	3944157	3944594	3944157	ID=cds.MS.gene24429.t1;Parent=MS.gene24429.t1

Gene Sequence

>MS.gene24429

ATGAAAAAAGAGAAAAAAGCTATGAAACCATATAGAGGAATAAGGATGAGAAAGTGGGGTAAGTGGGTGGCAGAGATTAGAGAACCAAACAAGAGATCAAGAATTTGGTTAGGTTCTTACATAACTCCTATTGCTGCTGCACGTGCTTATGATACTGCTGTGTTTTATCTTAGAGGGCCTTCTGCAAACCTTAATTTTCCAGAACTGTTGTTCAAAGACCAACAAGAAGATGAAGAAAATCTACAACAACGTGGGAATATGTCGGCTGATTCAATAAGGAAAAAAGCTACACAAGTTGGTGCTAGAGTTGATGCTATTGAAACTAATTCTCTAATTAATCATCATCATCATGTTTCTTCCAATAATCATGTTCACTCCAATTCTACTTCTTCTCTCAAACCTGACTTGAATGAGTTTCCAAAACCTGAAGATTGTTGA

Protein sequence

>MS.gene24429.t1

MKKEKKAMKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYITPIAAARAYDTAVFYLRGPSANLNFPELLFKDQQEDEENLQQRGNMSADSIRKKATQVGARVDAIETNSLINHHHHVSSNNHVHSNSTSSLKPDLNEFPKPEDC