Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26224.t1 | XP_003616102.1 | 94.6 | 574 | 24 | 3 | 87 | 655 | 80 | 651 | 3.00E-235 | 824.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26224.t1 | Q5XVH5 | 42.8 | 484 | 153 | 17 | 129 | 601 | 85 | 455 | 7.2e-44 | 180.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26224.t1 | G7K5X9 | 94.6 | 574 | 24 | 3 | 87 | 655 | 80 | 651 | 2.2e-235 | 824.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049328 | MS.gene26224 | 0.80403 | 2.63E-49 | -1.69E-46 |
| MS.gene049397 | MS.gene26224 | 0.82117 | 4.66E-53 | -1.69E-46 |
| MS.gene049418 | MS.gene26224 | 0.809789 | 1.59E-50 | -1.69E-46 |
| MS.gene049596 | MS.gene26224 | 0.811684 | 6.19E-51 | -1.69E-46 |
| MS.gene049622 | MS.gene26224 | 0.810996 | 8.73E-51 | -1.69E-46 |
| MS.gene04985 | MS.gene26224 | 0.833754 | 4.45E-56 | -1.69E-46 |
| MS.gene049989 | MS.gene26224 | 0.897783 | 1.01E-76 | -1.69E-46 |
| MS.gene050297 | MS.gene26224 | 0.903666 | 2.74E-79 | -1.69E-46 |
| MS.gene050310 | MS.gene26224 | 0.84011 | 1.06E-57 | -1.69E-46 |
| MS.gene050648 | MS.gene26224 | 0.873849 | 1.07E-67 | -1.69E-46 |
| MS.gene051067 | MS.gene26224 | 0.82378 | 1.15E-53 | -1.69E-46 |
| MS.gene051094 | MS.gene26224 | 0.841453 | 4.71E-58 | -1.69E-46 |
| MS.gene051263 | MS.gene26224 | 0.854244 | 1.40E-61 | -1.69E-46 |
| MS.gene051478 | MS.gene26224 | 0.843549 | 1.31E-58 | -1.69E-46 |
| MS.gene051629 | MS.gene26224 | 0.847994 | 8.13E-60 | -1.69E-46 |
| MS.gene051671 | MS.gene26224 | 0.803828 | 2.89E-49 | -1.69E-46 |
| MS.gene051698 | MS.gene26224 | 0.837015 | 6.67E-57 | -1.69E-46 |
| MS.gene052143 | MS.gene26224 | 0.806094 | 9.72E-50 | -1.69E-46 |
| MS.gene052367 | MS.gene26224 | 0.860012 | 2.78E-63 | -1.69E-46 |
| MS.gene053416 | MS.gene26224 | 0.869282 | 3.48E-66 | -1.69E-46 |
| MS.gene053417 | MS.gene26224 | 0.873701 | 1.20E-67 | -1.69E-46 |
| MS.gene05369 | MS.gene26224 | 0.821423 | 4.07E-53 | -1.69E-46 |
| MS.gene054643 | MS.gene26224 | 0.866643 | 2.45E-65 | -1.69E-46 |
| MS.gene055411 | MS.gene26224 | 0.842314 | 2.79E-58 | -1.69E-46 |
| MS.gene055764 | MS.gene26224 | 0.804359 | 2.24E-49 | -1.69E-46 |
| MS.gene055957 | MS.gene26224 | 0.844459 | 7.46E-59 | -1.69E-46 |
| MS.gene056041 | MS.gene26224 | 0.833329 | 5.68E-56 | -1.69E-46 |
| MS.gene056042 | MS.gene26224 | 0.80738 | 5.20E-50 | -1.69E-46 |
| MS.gene056169 | MS.gene26224 | 0.816927 | 4.30E-52 | -1.69E-46 |
| MS.gene056228 | MS.gene26224 | 0.825651 | 4.17E-54 | -1.69E-46 |
| MS.gene056526 | MS.gene26224 | 0.80715 | 5.82E-50 | -1.69E-46 |
| MS.gene057004 | MS.gene26224 | 0.842199 | 2.99E-58 | -1.69E-46 |
| MS.gene057483 | MS.gene26224 | 0.856984 | 2.22E-62 | -1.69E-46 |
| MS.gene058196 | MS.gene26224 | 0.845907 | 3.03E-59 | -1.69E-46 |
| MS.gene058197 | MS.gene26224 | 0.87493 | 4.60E-68 | -1.69E-46 |
| MS.gene058198 | MS.gene26224 | 0.872638 | 2.73E-67 | -1.69E-46 |
| MS.gene058818 | MS.gene26224 | 0.843961 | 1.02E-58 | -1.69E-46 |
| MS.gene058844 | MS.gene26224 | 0.817787 | 2.75E-52 | -1.69E-46 |
| MS.gene059300 | MS.gene26224 | 0.904578 | 1.06E-79 | -1.69E-46 |
| MS.gene060473 | MS.gene26224 | 0.836344 | 9.89E-57 | -1.69E-46 |
| MS.gene060565 | MS.gene26224 | 0.841708 | 4.03E-58 | -1.69E-46 |
| MS.gene06057 | MS.gene26224 | 0.89268 | 1.27E-74 | -1.69E-46 |
| MS.gene061260 | MS.gene26224 | 0.846902 | 1.62E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26224.t1 | MTR_5g076140 | 95.152 | 660 | 18 | 6 | 1 | 655 | 1 | 651 | 0.0 | 1250 |
| MS.gene26224.t1 | MTR_3g063210 | 41.347 | 757 | 245 | 26 | 1 | 651 | 1 | 664 | 3.26e-107 | 339 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26224.t1 | AT5G37010 | 36.820 | 717 | 277 | 31 | 1 | 649 | 1 | 609 | 6.24e-72 | 245 |
| MS.gene26224.t1 | AT1G65710 | 38.121 | 564 | 182 | 23 | 66 | 601 | 31 | 455 | 2.19e-59 | 206 |
Find 116 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATGGAACATTTGTTCTTC+TGG | 0.205146 | 5.4:-58270659 | MS.gene26224:CDS |
| AACAGTAATGGTTCTGGTTC+AGG | 0.276473 | 5.4:-58272236 | MS.gene26224:CDS |
| AGATTAAGCAGAAGCTCTTC+TGG | 0.279054 | 5.4:-58272587 | MS.gene26224:CDS |
| CTAAGAGGGTTTCTTCTATA+AGG | 0.281468 | 5.4:+58271933 | None:intergenic |
| GGAAGAAGATCTTCTGAAAA+TGG | 0.284257 | 5.4:-58272275 | MS.gene26224:CDS |
| ACATTCCCATTTCCTCTTGC+AGG | 0.287911 | 5.4:+58272020 | None:intergenic |
| CGTTGATCTCTTTCTCTACT+TGG | 0.292517 | 5.4:+58272335 | None:intergenic |
| TGTGGATAAGCAAGTGAATT+AGG | 0.300136 | 5.4:+58271900 | None:intergenic |
| GAAGAAGAAGAAGCTTTCTT+TGG | 0.300588 | 5.4:+58272377 | None:intergenic |
| GGTGGATTGGTTAGAGGTTC+GGG | 0.304904 | 5.4:+58271025 | None:intergenic |
| TTGTACTAGGCCAGGGAAAA+TGG | 0.305744 | 5.4:-58272213 | MS.gene26224:CDS |
| AAAGCTTCTTCTTCTTCTAA+TGG | 0.317765 | 5.4:-58272371 | MS.gene26224:CDS |
| TTGTCCCTCATTTCAACATT+TGG | 0.318273 | 5.4:+58271232 | None:intergenic |
| TGGTGGATTGGTTAGAGGTT+CGG | 0.323939 | 5.4:+58271024 | None:intergenic |
| ATGTCACCTGCAAGAGGAAA+TGG | 0.328874 | 5.4:-58272026 | MS.gene26224:CDS |
| TCTTCAGCTAGGAAATATTC+TGG | 0.337380 | 5.4:-58272548 | MS.gene26224:CDS |
| AAGCTTTCTTTGGTGAATTC+CGG | 0.339092 | 5.4:+58272387 | None:intergenic |
| ATCATTGAACAGCAACAATA+AGG | 0.348913 | 5.4:-58272684 | MS.gene26224:CDS |
| TGTGAAGATCAAGAGTCTTC+AGG | 0.356248 | 5.4:-58270716 | MS.gene26224:CDS |
| CCACAATCAAATGCTAATAA+TGG | 0.358815 | 5.4:-58271882 | MS.gene26224:CDS |
| TACTGTTACATCATTGGTTA+TGG | 0.360201 | 5.4:-58272177 | MS.gene26224:CDS |
| GATTCTACAAATGATGATTC+AGG | 0.361087 | 5.4:+58270815 | None:intergenic |
| GATGAACAAAAGAGAGTTCA+TGG | 0.370002 | 5.4:-58272467 | MS.gene26224:CDS |
| TCCTGCTACTGTTACATCAT+TGG | 0.374850 | 5.4:-58272183 | MS.gene26224:CDS |
| GTTTGTGGTGGATTGGTTAG+AGG | 0.379183 | 5.4:+58271019 | None:intergenic |
| AATTGAAGCTGAGACTATTC+AGG | 0.383102 | 5.4:-58271826 | MS.gene26224:intron |
| CTGGTGATTCATCGGATTGT+TGG | 0.383426 | 5.4:-58270640 | MS.gene26224:CDS |
| GTGGAGGAGAAGGTGTTAAG+AGG | 0.397596 | 5.4:-58272139 | MS.gene26224:CDS |
| GTTCTGGTTCAGGTTGTACT+AGG | 0.417475 | 5.4:-58272226 | MS.gene26224:CDS |
| CAGCAGAGTTGCTATGGAAA+AGG | 0.418147 | 5.4:-58271191 | MS.gene26224:CDS |
| AAATGATTTGGTGGAAGAAA+GGG | 0.427395 | 5.4:+58272991 | None:intergenic |
| CGGAGAGTGAGTAGATCTCC+TGG | 0.430572 | 5.4:-58272296 | MS.gene26224:CDS |
| TAAGATCAGCAACAGCTTCA+AGG | 0.433635 | 5.4:+58270891 | None:intergenic |
| CATCAGCATAGTGGTGGTAT+TGG | 0.433740 | 5.4:-58270566 | MS.gene26224:CDS |
| AAAATGATTTGGTGGAAGAA+AGG | 0.442559 | 5.4:+58272990 | None:intergenic |
| GTTCCATCACAACAAAATGA+TGG | 0.444007 | 5.4:-58272731 | MS.gene26224:CDS |
| AAGAATGTGGTGATGCCATC+AGG | 0.447953 | 5.4:-58271100 | MS.gene26224:CDS |
| GGTTCAGGTTGTACTAGGCC+AGG | 0.450436 | 5.4:-58272221 | MS.gene26224:CDS |
| ATGTCACCTGCTAGAGGGAA+TGG | 0.452778 | 5.4:-58272080 | MS.gene26224:CDS |
| TGAGGGACAACACAAGAAAC+AGG | 0.453620 | 5.4:-58271219 | MS.gene26224:CDS |
| AACAATAACAGTAATGGTTC+TGG | 0.460724 | 5.4:-58272242 | MS.gene26224:CDS |
| GGTTAGAGGTTCGGGATTGA+CGG | 0.468774 | 5.4:+58271033 | None:intergenic |
| TTGTTCTTCTGGTGATTCAT+CGG | 0.470946 | 5.4:-58270648 | MS.gene26224:CDS |
| GTATGAGGTTTGTGGTGGAT+TGG | 0.475371 | 5.4:+58271012 | None:intergenic |
| CCACACGAAGGAACAACAAC+AGG | 0.477360 | 5.4:-58271158 | MS.gene26224:CDS |
| AGTAACAATGGTGGAGGAGA+AGG | 0.480978 | 5.4:-58272149 | MS.gene26224:CDS |
| AAGTAGTAATGAAGTGTATG+AGG | 0.481142 | 5.4:+58270997 | None:intergenic |
| ATCAGCAACCTTCTCTTAGC+AGG | 0.482494 | 5.4:-58271986 | MS.gene26224:CDS |
| TTCGAGATTGAATTCAAAAG+AGG | 0.485046 | 5.4:-58270615 | MS.gene26224:CDS |
| ATCACAACAAAATGATGGGT+TGG | 0.488194 | 5.4:-58272726 | MS.gene26224:CDS |
| AGAGAAAGTTGAACTTGTTG+TGG | 0.489765 | 5.4:+58270865 | None:intergenic |
| CTTCTTCTTCTTCTAATGGA+AGG | 0.491446 | 5.4:-58272367 | MS.gene26224:CDS |
| AGCAGAGTTGCTATGGAAAA+GGG | 0.493636 | 5.4:-58271190 | MS.gene26224:CDS |
| GACAAACAGCAGAGTTGCTA+TGG | 0.496318 | 5.4:-58271197 | MS.gene26224:CDS |
| ACCAATGATGTAACAGTAGC+AGG | 0.497665 | 5.4:+58272182 | None:intergenic |
| TTAGGATCAACCTCACTAAG+AGG | 0.500068 | 5.4:+58271918 | None:intergenic |
| CCTGTTGTTGTTCCTTCGTG+TGG | 0.502796 | 5.4:+58271158 | None:intergenic |
| GTCACATACTTATGTAAACT+TGG | 0.509026 | 5.4:+58270761 | None:intergenic |
| TGTCACCTGCAAGAGGAAAT+GGG | 0.509249 | 5.4:-58272025 | MS.gene26224:CDS |
| TGTCACCTGCTAGAGGGAAT+GGG | 0.515047 | 5.4:-58272079 | MS.gene26224:CDS |
| CTGCTACTTCTTCTTCAGCT+AGG | 0.521567 | 5.4:-58272559 | MS.gene26224:CDS |
| CCATTATTAGCATTTGATTG+TGG | 0.522575 | 5.4:+58271882 | None:intergenic |
| TGGAGGAGAAGGTGTTAAGA+GGG | 0.522678 | 5.4:-58272138 | MS.gene26224:CDS |
| CATAGTGGTGGTATTGGACG+TGG | 0.522968 | 5.4:-58270560 | MS.gene26224:CDS |
| AATAAGGTTGGTAGCGCTGT+TGG | 0.523748 | 5.4:-58272668 | MS.gene26224:CDS |
| AATGAAGTGTATGAGGTTTG+TGG | 0.524066 | 5.4:+58271004 | None:intergenic |
| CTGCTTCTTGTAATCCCTGA+TGG | 0.525661 | 5.4:+58271085 | None:intergenic |
| ATAACCATCGTCCGCGTCAC+CGG | 0.527857 | 5.4:-58272406 | MS.gene26224:CDS |
| CCATTCCCATTCCCTCTAGC+AGG | 0.529797 | 5.4:+58272074 | None:intergenic |
| CAAGCTTTGTTGAGACAAGC+TGG | 0.533501 | 5.4:+58270920 | None:intergenic |
| ACAACAACAGGAAGAGATCA+AGG | 0.544746 | 5.4:-58271146 | MS.gene26224:CDS |
| GATAAAAGTAACAATGGTGG+AGG | 0.545003 | 5.4:-58272155 | MS.gene26224:CDS |
| TTCCATCACAACAAAATGAT+GGG | 0.545629 | 5.4:-58272730 | MS.gene26224:CDS |
| AGAAACCAAATGTTGAAATG+AGG | 0.549758 | 5.4:-58271237 | MS.gene26224:CDS |
| GAAACCAAATGTTGAAATGA+GGG | 0.552067 | 5.4:-58271236 | MS.gene26224:CDS |
| GGGTGTGGAAAATGATTTGG+TGG | 0.556301 | 5.4:+58272982 | None:intergenic |
| CAATCAAATGCTAATAATGG+TGG | 0.560234 | 5.4:-58271879 | MS.gene26224:CDS |
| TTGAACAGCAACAATAAGGT+TGG | 0.562041 | 5.4:-58272680 | MS.gene26224:CDS |
| AACAACAACAATAACAGTAA+TGG | 0.562799 | 5.4:-58272248 | MS.gene26224:CDS |
| AATGATTTGGTGGAAGAAAG+GGG | 0.570280 | 5.4:+58272992 | None:intergenic |
| GTTATGGATAAAAGTAACAA+TGG | 0.571865 | 5.4:-58272161 | MS.gene26224:CDS |
| GAGTTATTCCTGCTAAGAGA+AGG | 0.573600 | 5.4:+58271978 | None:intergenic |
| CCTGCTAGAGGGAATGGGAA+TGG | 0.579044 | 5.4:-58272074 | MS.gene26224:CDS |
| CGTTCAATGTCACCTGCAAG+AGG | 0.592581 | 5.4:-58272032 | MS.gene26224:CDS |
| TTAGCAGGAATAACTCTGCA+AGG | 0.592969 | 5.4:-58271971 | MS.gene26224:CDS |
| TAGGATCAACCTCACTAAGA+GGG | 0.593512 | 5.4:+58271919 | None:intergenic |
| ATGAACAAAAGAGAGTTCAT+GGG | 0.597175 | 5.4:-58272466 | MS.gene26224:CDS |
| AGGAATATGATGGTGTTGCT+CGG | 0.600454 | 5.4:-58272430 | MS.gene26224:CDS |
| CGTTCAATGTCACCTGCTAG+AGG | 0.601341 | 5.4:-58272086 | MS.gene26224:CDS |
| TATGTGACTGTTAAGAGAGG+TGG | 0.603741 | 5.4:-58270746 | MS.gene26224:CDS |
| GAGTGTGATCATCAGCATAG+TGG | 0.606136 | 5.4:-58270575 | MS.gene26224:CDS |
| CAATGATGCAATTTCAGCTG+AGG | 0.608354 | 5.4:-58272489 | MS.gene26224:CDS |
| TTTGGTGAATTCCGGTGACG+CGG | 0.608706 | 5.4:+58272395 | None:intergenic |
| GTTCAGGTTGTACTAGGCCA+GGG | 0.608850 | 5.4:-58272220 | MS.gene26224:CDS |
| GGAAACAAAGTTCAGAACAA+AGG | 0.613680 | 5.4:-58271858 | MS.gene26224:CDS |
| TGAGTAGTGGTCAACAACAA+TGG | 0.614677 | 5.4:-58270676 | MS.gene26224:CDS |
| AATAGTTTCACTGTGAGTAG+TGG | 0.617083 | 5.4:-58270689 | MS.gene26224:CDS |
| ATGGATAAAAGTAACAATGG+TGG | 0.618521 | 5.4:-58272158 | MS.gene26224:CDS |
| GATAACAGTGAGGAATATGA+TGG | 0.621876 | 5.4:-58272440 | MS.gene26224:CDS |
| TGTTGTGAGTGATGATGTGA+TGG | 0.622257 | 5.4:-58270786 | MS.gene26224:CDS |
| TAGAAGAAACCCTCTTAGTG+AGG | 0.626845 | 5.4:-58271928 | MS.gene26224:CDS |
| AACGTTCGAGTAGTAGAGAA+CGG | 0.630171 | 5.4:-58272316 | MS.gene26224:CDS |
| ATGATTTGGTGGAAGAAAGG+GGG | 0.632458 | 5.4:+58272993 | None:intergenic |
| AATTCCGGTGACGCGGACGA+TGG | 0.635607 | 5.4:+58272402 | None:intergenic |
| GTTCAATGTCACCTGCTAGA+GGG | 0.636297 | 5.4:-58272085 | MS.gene26224:CDS |
| CAAGCTGGAAGAGAAACAGA+AGG | 0.639034 | 5.4:+58270935 | None:intergenic |
| GAAGTGTATGAGGTTTGTGG+TGG | 0.648924 | 5.4:+58271007 | None:intergenic |
| ACATTGTGTTGAACAGTGAA+AGG | 0.652397 | 5.4:+58272752 | None:intergenic |
| AGAATGTGGTGATGCCATCA+GGG | 0.662260 | 5.4:-58271099 | MS.gene26224:CDS |
| TGTGATCATCAGCATAGTGG+TGG | 0.669655 | 5.4:-58270572 | MS.gene26224:CDS |
| GATGCAATTCTAATTCAATG+TGG | 0.677750 | 5.4:-58272611 | MS.gene26224:CDS |
| CTAGCAGGTGACATTGAACG+TGG | 0.678229 | 5.4:+58272089 | None:intergenic |
| GGGTGTGAATTGCCACACGA+AGG | 0.680878 | 5.4:-58271170 | MS.gene26224:CDS |
| AAGTATGTGACTGTTAAGAG+AGG | 0.686254 | 5.4:-58270749 | MS.gene26224:CDS |
| TAATGCTATTGTGAAGAATG+TGG | 0.688273 | 5.4:-58271113 | MS.gene26224:CDS |
| TCATGGGAGTGATAACAGTG+AGG | 0.744139 | 5.4:-58272450 | MS.gene26224:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAAAAATAAAAATTTACT+TGG | + | chr5.4:58271870-58271889 | None:intergenic | 10.0% |
| !!! | TTTTTATAATTTCATAGAAA+TGG | - | chr5.4:58271929-58271948 | MS.gene26224:CDS | 10.0% |
| !! | GAAATTATAAAAACAATCAT+TGG | + | chr5.4:58271922-58271941 | None:intergenic | 15.0% |
| !!! | ATGATAAAAATCTCTTTTTT+TGG | + | chr5.4:58270754-58270773 | None:intergenic | 15.0% |
| !! | AATATAGATAGATAATGATG+TGG | - | chr5.4:58271843-58271862 | MS.gene26224:CDS | 20.0% |
| !! | TAAGAATGTACATAAAATGA+TGG | + | chr5.4:58272294-58272313 | None:intergenic | 20.0% |
| !! | TAATGGTTATTAGAATTTGT+TGG | - | chr5.4:58272251-58272270 | MS.gene26224:CDS | 20.0% |
| !! | TCATGTCATAACAAAATTAA+TGG | - | chr5.4:58272234-58272253 | MS.gene26224:CDS | 20.0% |
| !!! | CATATTTTTTCTTAATCATC+CGG | + | chr5.4:58272162-58272181 | None:intergenic | 20.0% |
| !!! | GACATGAAATTTGAAATTAT+TGG | + | chr5.4:58272221-58272240 | None:intergenic | 20.0% |
| ! | AACAACAACAATAACAGTAA+TGG | - | chr5.4:58271333-58271352 | MS.gene26224:intron | 25.0% |
| ! | AGCTAAAAATTGTTACACTA+AGG | + | chr5.4:58272080-58272099 | None:intergenic | 25.0% |
| ! | GTTATGGATAAAAGTAACAA+TGG | - | chr5.4:58271420-58271439 | MS.gene26224:intron | 25.0% |
| ! | TGATTAAGGTTGAATAGTTT+CGG | - | chr5.4:58272037-58272056 | MS.gene26224:CDS | 25.0% |
| !!! | AGAATGTTTTTGTTGAATTG+GGG | + | chr5.4:58270623-58270642 | None:intergenic | 25.0% |
| !!! | CAGAATGTTTTTGTTGAATT+GGG | + | chr5.4:58270624-58270643 | None:intergenic | 25.0% |
| !!! | TCAGAATGTTTTTGTTGAAT+TGG | + | chr5.4:58270625-58270644 | None:intergenic | 25.0% |
| !!! | TTTTCTCTCTTTTTTCATCA+TGG | + | chr5.4:58270792-58270811 | None:intergenic | 25.0% |
| AAAGCTTCTTCTTCTTCTAA+TGG | - | chr5.4:58271210-58271229 | MS.gene26224:CDS | 30.0% | |
| AACAATAACAGTAATGGTTC+TGG | - | chr5.4:58271339-58271358 | MS.gene26224:intron | 30.0% | |
| AAGTAGTAATGAAGTGTATG+AGG | + | chr5.4:58272587-58272606 | None:intergenic | 30.0% | |
| AGAAACCAAATGTTGAAATG+AGG | - | chr5.4:58272344-58272363 | MS.gene26224:CDS | 30.0% | |
| AGTTCAGAACAAAGGAAAAA+AGG | - | chr5.4:58271731-58271750 | MS.gene26224:intron | 30.0% | |
| ATCATTGAACAGCAACAATA+AGG | - | chr5.4:58270897-58270916 | MS.gene26224:CDS | 30.0% | |
| ATGAACAAAAGAGAGTTCAT+GGG | - | chr5.4:58271115-58271134 | MS.gene26224:CDS | 30.0% | |
| ATGGATAAAAGTAACAATGG+TGG | - | chr5.4:58271423-58271442 | MS.gene26224:intron | 30.0% | |
| CAATCAAATGCTAATAATGG+TGG | - | chr5.4:58271702-58271721 | MS.gene26224:intron | 30.0% | |
| CCACAATCAAATGCTAATAA+TGG | - | chr5.4:58271699-58271718 | MS.gene26224:intron | 30.0% | |
| CCATTATTAGCATTTGATTG+TGG | + | chr5.4:58271702-58271721 | None:intergenic | 30.0% | |
| GAAACCAAATGTTGAAATGA+GGG | - | chr5.4:58272345-58272364 | MS.gene26224:CDS | 30.0% | |
| GATGCAATTCTAATTCAATG+TGG | - | chr5.4:58270970-58270989 | MS.gene26224:CDS | 30.0% | |
| GATTCTACAAATGATGATTC+AGG | + | chr5.4:58272769-58272788 | None:intergenic | 30.0% | |
| GTCACATACTTATGTAAACT+TGG | + | chr5.4:58272823-58272842 | None:intergenic | 30.0% | |
| TAATGCTATTGTGAAGAATG+TGG | - | chr5.4:58272468-58272487 | MS.gene26224:CDS | 30.0% | |
| TGGTTAATGTGCTTTGATTA+AGG | - | chr5.4:58272023-58272042 | MS.gene26224:CDS | 30.0% | |
| TTCCATCACAACAAAATGAT+GGG | - | chr5.4:58270851-58270870 | MS.gene26224:CDS | 30.0% | |
| TTCGAGATTGAATTCAAAAG+AGG | - | chr5.4:58272966-58272985 | MS.gene26224:CDS | 30.0% | |
| ! | CATGTTCTTTTACAACTTCT+GGG | + | chr5.4:58270726-58270745 | None:intergenic | 30.0% |
| ! | TACTGTTACATCATTGGTTA+TGG | - | chr5.4:58271404-58271423 | MS.gene26224:intron | 30.0% |
| ! | TCATGTTCTTTTACAACTTC+TGG | + | chr5.4:58270727-58270746 | None:intergenic | 30.0% |
| !! | AAAATGATTTGGTGGAAGAA+AGG | + | chr5.4:58270594-58270613 | None:intergenic | 30.0% |
| !! | AAATGATTTGGTGGAAGAAA+GGG | + | chr5.4:58270593-58270612 | None:intergenic | 30.0% |
| !! | GAATGTTTTTGTTGAATTGG+GGG | + | chr5.4:58270622-58270641 | None:intergenic | 30.0% |
| !!! | GTTGTTTTTGTTGTTCTTGA+GGG | + | chr5.4:58270677-58270696 | None:intergenic | 30.0% |
| !!! | TGTTGTTTTTGTTGTTCTTG+AGG | + | chr5.4:58270678-58270697 | None:intergenic | 30.0% |
| AAGCTTTCTTTGGTGAATTC+CGG | + | chr5.4:58271197-58271216 | None:intergenic | 35.0% | |
| AAGTATGTGACTGTTAAGAG+AGG | - | chr5.4:58272832-58272851 | MS.gene26224:CDS | 35.0% | |
| AATAGTTTCACTGTGAGTAG+TGG | - | chr5.4:58272892-58272911 | MS.gene26224:CDS | 35.0% | |
| AATGAAGTGTATGAGGTTTG+TGG | + | chr5.4:58272580-58272599 | None:intergenic | 35.0% | |
| AATTGAAGCTGAGACTATTC+AGG | - | chr5.4:58271755-58271774 | MS.gene26224:intron | 35.0% | |
| ACATTGTGTTGAACAGTGAA+AGG | + | chr5.4:58270832-58270851 | None:intergenic | 35.0% | |
| ATCAAGTGTTTGAGCTTCAA+TGG | - | chr5.4:58272003-58272022 | MS.gene26224:CDS | 35.0% | |
| CAATGGAACATTTGTTCTTC+TGG | - | chr5.4:58272922-58272941 | MS.gene26224:CDS | 35.0% | |
| CATAAAATGATGGTCCTCAT+AGG | + | chr5.4:58272284-58272303 | None:intergenic | 35.0% | |
| CTAAGAGGGTTTCTTCTATA+AGG | + | chr5.4:58271651-58271670 | None:intergenic | 35.0% | |
| CTTCTTCTTCTTCTAATGGA+AGG | - | chr5.4:58271214-58271233 | MS.gene26224:CDS | 35.0% | |
| GAAGAAGAAGAAGCTTTCTT+TGG | + | chr5.4:58271207-58271226 | None:intergenic | 35.0% | |
| GATAAAAGTAACAATGGTGG+AGG | - | chr5.4:58271426-58271445 | MS.gene26224:intron | 35.0% | |
| GATAACAGTGAGGAATATGA+TGG | - | chr5.4:58271141-58271160 | MS.gene26224:CDS | 35.0% | |
| GATGAACAAAAGAGAGTTCA+TGG | - | chr5.4:58271114-58271133 | MS.gene26224:CDS | 35.0% | |
| GGAAACAAAGTTCAGAACAA+AGG | - | chr5.4:58271723-58271742 | MS.gene26224:intron | 35.0% | |
| GTTCCATCACAACAAAATGA+TGG | - | chr5.4:58270850-58270869 | MS.gene26224:CDS | 35.0% | |
| TCTTCAGCTAGGAAATATTC+TGG | - | chr5.4:58271033-58271052 | MS.gene26224:CDS | 35.0% | |
| TGTGGATAAGCAAGTGAATT+AGG | + | chr5.4:58271684-58271703 | None:intergenic | 35.0% | |
| TTGAACAGCAACAATAAGGT+TGG | - | chr5.4:58270901-58270920 | MS.gene26224:CDS | 35.0% | |
| TTGTCCCTCATTTCAACATT+TGG | + | chr5.4:58272352-58272371 | None:intergenic | 35.0% | |
| TTGTTCTTCTGGTGATTCAT+CGG | - | chr5.4:58272933-58272952 | MS.gene26224:CDS | 35.0% | |
| TTGTTGGACTAAAACCTATG+AGG | - | chr5.4:58272267-58272286 | MS.gene26224:CDS | 35.0% | |
| ! | GGAAGAAGATCTTCTGAAAA+TGG | - | chr5.4:58271306-58271325 | MS.gene26224:intron | 35.0% |
| ! | GTTGTGTTGTGTTCTTTTGA+TGG | + | chr5.4:58272627-58272646 | None:intergenic | 35.0% |
| ! | TTTTCAGAAGATCTTCTTCC+AGG | + | chr5.4:58271306-58271325 | None:intergenic | 35.0% |
| !! | AACCCATCATTTTGTTGTGA+TGG | + | chr5.4:58270856-58270875 | None:intergenic | 35.0% |
| !! | AATGATTTGGTGGAAGAAAG+GGG | + | chr5.4:58270592-58270611 | None:intergenic | 35.0% |
| !! | AGAGAAAGTTGAACTTGTTG+TGG | + | chr5.4:58272719-58272738 | None:intergenic | 35.0% |
| !! | AGTGAAAGGTGTGATTTTGA+TGG | + | chr5.4:58270818-58270837 | None:intergenic | 35.0% |
| !! | ATCACAACAAAATGATGGGT+TGG | - | chr5.4:58270855-58270874 | MS.gene26224:CDS | 35.0% |
| AACGTTCGAGTAGTAGAGAA+CGG | - | chr5.4:58271265-58271284 | MS.gene26224:intron | 40.0% | |
| ACAACAACAGGAAGAGATCA+AGG | - | chr5.4:58272435-58272454 | MS.gene26224:CDS | 40.0% | |
| ACCAATGATGTAACAGTAGC+AGG | + | chr5.4:58271402-58271421 | None:intergenic | 40.0% | |
| AGATTAAGCAGAAGCTCTTC+TGG | - | chr5.4:58270994-58271013 | MS.gene26224:CDS | 40.0% | |
| AGCAGAGTTGCTATGGAAAA+GGG | - | chr5.4:58272391-58272410 | MS.gene26224:CDS | 40.0% | |
| CAATGATGCAATTTCAGCTG+AGG | - | chr5.4:58271092-58271111 | MS.gene26224:CDS | 40.0% | |
| CGTTGATCTCTTTCTCTACT+TGG | + | chr5.4:58271249-58271268 | None:intergenic | 40.0% | |
| GAGTTATTCCTGCTAAGAGA+AGG | + | chr5.4:58271606-58271625 | None:intergenic | 40.0% | |
| TAAGATCAGCAACAGCTTCA+AGG | + | chr5.4:58272693-58272712 | None:intergenic | 40.0% | |
| TAGAAGAAACCCTCTTAGTG+AGG | - | chr5.4:58271653-58271672 | MS.gene26224:intron | 40.0% | |
| TAGGATCAACCTCACTAAGA+GGG | + | chr5.4:58271665-58271684 | None:intergenic | 40.0% | |
| TATGTGACTGTTAAGAGAGG+TGG | - | chr5.4:58272835-58272854 | MS.gene26224:CDS | 40.0% | |
| TCCTGCTACTGTTACATCAT+TGG | - | chr5.4:58271398-58271417 | MS.gene26224:intron | 40.0% | |
| TGAGTAGTGGTCAACAACAA+TGG | - | chr5.4:58272905-58272924 | MS.gene26224:CDS | 40.0% | |
| TGTGAAGATCAAGAGTCTTC+AGG | - | chr5.4:58272865-58272884 | MS.gene26224:CDS | 40.0% | |
| TTAGCAGGAATAACTCTGCA+AGG | - | chr5.4:58271610-58271629 | MS.gene26224:intron | 40.0% | |
| TTAGGATCAACCTCACTAAG+AGG | + | chr5.4:58271666-58271685 | None:intergenic | 40.0% | |
| ! | TCAACATTTGGTTTCTGCAG+TGG | + | chr5.4:58272340-58272359 | None:intergenic | 40.0% |
| ! | TGTTGTGAGTGATGATGTGA+TGG | - | chr5.4:58272795-58272814 | MS.gene26224:CDS | 40.0% |
| ! | TTTGGTTTCTGCAGTGGATA+TGG | + | chr5.4:58272334-58272353 | None:intergenic | 40.0% |
| ! | TTTTTGTTGAATTGGGGGTG+TGG | + | chr5.4:58270617-58270636 | None:intergenic | 40.0% |
| !! | AACAGTAATGGTTCTGGTTC+AGG | - | chr5.4:58271345-58271364 | MS.gene26224:intron | 40.0% |
| !! | AGGAATATGATGGTGTTGCT+CGG | - | chr5.4:58271151-58271170 | MS.gene26224:CDS | 40.0% |
| !! | ATGATTTGGTGGAAGAAAGG+GGG | + | chr5.4:58270591-58270610 | None:intergenic | 40.0% |
| ACATTCCCATTTCCTCTTGC+AGG | + | chr5.4:58271564-58271583 | None:intergenic | 45.0% | |
| ATCAGCAACCTTCTCTTAGC+AGG | - | chr5.4:58271595-58271614 | MS.gene26224:intron | 45.0% | |
| ATGTCACCTGCAAGAGGAAA+TGG | - | chr5.4:58271555-58271574 | MS.gene26224:intron | 45.0% | |
| CAAGCTGGAAGAGAAACAGA+AGG | + | chr5.4:58272649-58272668 | None:intergenic | 45.0% | |
| CAGCAGAGTTGCTATGGAAA+AGG | - | chr5.4:58272390-58272409 | MS.gene26224:CDS | 45.0% | |
| CATCAGCATAGTGGTGGTAT+TGG | - | chr5.4:58273015-58273034 | MS.gene26224:CDS | 45.0% | |
| CTGCTTCTTGTAATCCCTGA+TGG | + | chr5.4:58272499-58272518 | None:intergenic | 45.0% | |
| CTGGTGATTCATCGGATTGT+TGG | - | chr5.4:58272941-58272960 | MS.gene26224:CDS | 45.0% | |
| GAAGTGTATGAGGTTTGTGG+TGG | + | chr5.4:58272577-58272596 | None:intergenic | 45.0% | |
| GACAAACAGCAGAGTTGCTA+TGG | - | chr5.4:58272384-58272403 | MS.gene26224:CDS | 45.0% | |
| GAGTGTGATCATCAGCATAG+TGG | - | chr5.4:58273006-58273025 | MS.gene26224:CDS | 45.0% | |
| GTTCAATGTCACCTGCTAGA+GGG | - | chr5.4:58271496-58271515 | MS.gene26224:intron | 45.0% | |
| TCATGGGAGTGATAACAGTG+AGG | - | chr5.4:58271131-58271150 | MS.gene26224:CDS | 45.0% | |
| TGAGGGACAACACAAGAAAC+AGG | - | chr5.4:58272362-58272381 | MS.gene26224:CDS | 45.0% | |
| TGTCACCTGCAAGAGGAAAT+GGG | - | chr5.4:58271556-58271575 | MS.gene26224:intron | 45.0% | |
| TGTGATCATCAGCATAGTGG+TGG | - | chr5.4:58273009-58273028 | MS.gene26224:CDS | 45.0% | |
| TTGTACTAGGCCAGGGAAAA+TGG | - | chr5.4:58271368-58271387 | MS.gene26224:intron | 45.0% | |
| ! | AAGAATGTGGTGATGCCATC+AGG | - | chr5.4:58272481-58272500 | MS.gene26224:CDS | 45.0% |
| ! | AATCATCCGGTTCTAGCAGA+AGG | + | chr5.4:58272149-58272168 | None:intergenic | 45.0% |
| ! | AGAATGTGGTGATGCCATCA+GGG | - | chr5.4:58272482-58272501 | MS.gene26224:CDS | 45.0% |
| ! | AGTAACAATGGTGGAGGAGA+AGG | - | chr5.4:58271432-58271451 | MS.gene26224:intron | 45.0% |
| ! | ATCATCCGGTTCTAGCAGAA+GGG | + | chr5.4:58272148-58272167 | None:intergenic | 45.0% |
| ! | CTGCTACTTCTTCTTCAGCT+AGG | - | chr5.4:58271022-58271041 | MS.gene26224:CDS | 45.0% |
| ! | GGGTGTGGAAAATGATTTGG+TGG | + | chr5.4:58270602-58270621 | None:intergenic | 45.0% |
| ! | TGGGGGTGTGGAAAATGATT+TGG | + | chr5.4:58270605-58270624 | None:intergenic | 45.0% |
| !! | AATAAGGTTGGTAGCGCTGT+TGG | - | chr5.4:58270913-58270932 | MS.gene26224:CDS | 45.0% |
| !! | CAAGCTTTGTTGAGACAAGC+TGG | + | chr5.4:58272664-58272683 | None:intergenic | 45.0% |
| !! | GTATGAGGTTTGTGGTGGAT+TGG | + | chr5.4:58272572-58272591 | None:intergenic | 45.0% |
| !! | GTTCTGGTTCAGGTTGTACT+AGG | - | chr5.4:58271355-58271374 | MS.gene26224:intron | 45.0% |
| !! | GTTTGTGGTGGATTGGTTAG+AGG | + | chr5.4:58272565-58272584 | None:intergenic | 45.0% |
| !! | TGGAGGAGAAGGTGTTAAGA+GGG | - | chr5.4:58271443-58271462 | MS.gene26224:intron | 45.0% |
| !! | TGGTGGATTGGTTAGAGGTT+CGG | + | chr5.4:58272560-58272579 | None:intergenic | 45.0% |
| ATGTCACCTGCTAGAGGGAA+TGG | - | chr5.4:58271501-58271520 | MS.gene26224:intron | 50.0% | |
| CCACACGAAGGAACAACAAC+AGG | - | chr5.4:58272423-58272442 | MS.gene26224:CDS | 50.0% | |
| CGTTCAATGTCACCTGCAAG+AGG | - | chr5.4:58271549-58271568 | MS.gene26224:intron | 50.0% | |
| CGTTCAATGTCACCTGCTAG+AGG | - | chr5.4:58271495-58271514 | MS.gene26224:intron | 50.0% | |
| CTAGCAGGTGACATTGAACG+TGG | + | chr5.4:58271495-58271514 | None:intergenic | 50.0% | |
| GGTTAGAGGTTCGGGATTGA+CGG | + | chr5.4:58272551-58272570 | None:intergenic | 50.0% | |
| TGTCACCTGCTAGAGGGAAT+GGG | - | chr5.4:58271502-58271521 | MS.gene26224:intron | 50.0% | |
| TTTGGTGAATTCCGGTGACG+CGG | + | chr5.4:58271189-58271208 | None:intergenic | 50.0% | |
| ! | CATAGTGGTGGTATTGGACG+TGG | - | chr5.4:58273021-58273040 | MS.gene26224:CDS | 50.0% |
| ! | CCTGTTGTTGTTCCTTCGTG+TGG | + | chr5.4:58272426-58272445 | None:intergenic | 50.0% |
| ! | GGAACAGTCACCATTTTCCC+TGG | + | chr5.4:58271381-58271400 | None:intergenic | 50.0% |
| ! | TCATCCGGTTCTAGCAGAAG+GGG | + | chr5.4:58272147-58272166 | None:intergenic | 50.0% |
| !! | GGTGGATTGGTTAGAGGTTC+GGG | + | chr5.4:58272559-58272578 | None:intergenic | 50.0% |
| !! | GTGGAGGAGAAGGTGTTAAG+AGG | - | chr5.4:58271442-58271461 | MS.gene26224:intron | 50.0% |
| !! | GTTCAGGTTGTACTAGGCCA+GGG | - | chr5.4:58271361-58271380 | MS.gene26224:intron | 50.0% |
| ATAACCATCGTCCGCGTCAC+CGG | - | chr5.4:58271175-58271194 | MS.gene26224:CDS | 55.0% | |
| CCATTCCCATTCCCTCTAGC+AGG | + | chr5.4:58271510-58271529 | None:intergenic | 55.0% | |
| CCTGCTAGAGGGAATGGGAA+TGG | - | chr5.4:58271507-58271526 | MS.gene26224:intron | 55.0% | |
| CGGAGAGTGAGTAGATCTCC+TGG | - | chr5.4:58271285-58271304 | MS.gene26224:intron | 55.0% | |
| GCTCTCGAGATAGCTCGTCT+AGG | + | chr5.4:58272124-58272143 | None:intergenic | 55.0% | |
| GGGTGTGAATTGCCACACGA+AGG | - | chr5.4:58272411-58272430 | MS.gene26224:CDS | 55.0% | |
| ! | CATCCGGTTCTAGCAGAAGG+GGG | + | chr5.4:58272146-58272165 | None:intergenic | 55.0% |
| !! | GGTTCAGGTTGTACTAGGCC+AGG | - | chr5.4:58271360-58271379 | MS.gene26224:intron | 55.0% |
| AATTCCGGTGACGCGGACGA+TGG | + | chr5.4:58271182-58271201 | None:intergenic | 60.0% | |
| GAGCCCCCTTCTGCTAGAAC+CGG | - | chr5.4:58272140-58272159 | MS.gene26224:CDS | 60.0% | |
| ! | GGAAGAAAGGGGGTGTGAGG+AGG | + | chr5.4:58270581-58270600 | None:intergenic | 60.0% |
| ! | GGTGGAAGAAAGGGGGTGTG+AGG | + | chr5.4:58270584-58270603 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 58270532 | 58273071 | 58270532 | ID=MS.gene26224 |
| chr5.4 | mRNA | 58270532 | 58273071 | 58270532 | ID=MS.gene26224.t1;Parent=MS.gene26224 |
| chr5.4 | exon | 58271827 | 58273071 | 58271827 | ID=MS.gene26224.t1.exon1;Parent=MS.gene26224.t1 |
| chr5.4 | CDS | 58271827 | 58273071 | 58271827 | ID=cds.MS.gene26224.t1;Parent=MS.gene26224.t1 |
| chr5.4 | exon | 58270532 | 58271257 | 58270532 | ID=MS.gene26224.t1.exon2;Parent=MS.gene26224.t1 |
| chr5.4 | CDS | 58270532 | 58271257 | 58270532 | ID=cds.MS.gene26224.t1;Parent=MS.gene26224.t1 |
| Gene Sequence |
| Protein sequence |
