Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26305.t1 | AES98921.1 | 89.6 | 154 | 15 | 1 | 1 | 154 | 1 | 153 | 7.10E-74 | 286.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26305.t1 | Q8GWL2 | 44.7 | 141 | 63 | 3 | 14 | 154 | 16 | 141 | 8.3e-23 | 108.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26305.t1 | G7KFJ0 | 89.6 | 154 | 15 | 1 | 1 | 154 | 1 | 153 | 5.1e-74 | 286.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene26305 | MS.gene42848 | PPI |
| MS.gene42098 | MS.gene26305 | PPI |
| MS.gene26305 | MS.gene87039 | PPI |
| MS.gene26305 | MS.gene42099 | PPI |
| MS.gene87043 | MS.gene26305 | PPI |
| MS.gene26305 | MS.gene87040 | PPI |
| MS.gene87767 | MS.gene26305 | PPI |
| MS.gene26305 | MS.gene87046 | PPI |
| MS.gene26305 | MS.gene87768 | PPI |
| MS.gene26305 | MS.gene87769 | PPI |
| MS.gene26305 | MS.gene42100 | PPI |
| MS.gene26305 | MS.gene42097 | PPI |
| MS.gene26305 | MS.gene87762 | PPI |
| MS.gene26305 | MS.gene42091 | PPI |
| MS.gene26305 | MS.gene42103 | PPI |
| MS.gene26305 | MS.gene87038 | PPI |
| MS.gene26305 | MS.gene87765 | PPI |
| MS.gene26305 | MS.gene42096 | PPI |
| MS.gene26305 | MS.gene87041 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26305.t1 | MTR_5g074550 | 89.610 | 154 | 15 | 1 | 1 | 154 | 1 | 153 | 3.46e-100 | 286 |
| MS.gene26305.t1 | MTR_5g074560 | 74.194 | 155 | 28 | 3 | 1 | 154 | 3 | 146 | 1.89e-76 | 226 |
| MS.gene26305.t1 | MTR_7g072120 | 34.028 | 144 | 81 | 4 | 17 | 155 | 33 | 167 | 1.92e-18 | 78.6 |
| MS.gene26305.t1 | MTR_7g072170 | 33.333 | 144 | 82 | 4 | 17 | 155 | 33 | 167 | 2.79e-18 | 78.6 |
| MS.gene26305.t1 | MTR_7g072270 | 34.028 | 144 | 80 | 5 | 17 | 155 | 32 | 165 | 6.89e-18 | 76.3 |
| MS.gene26305.t1 | MTR_7g072270 | 33.333 | 144 | 81 | 5 | 17 | 155 | 32 | 165 | 4.74e-17 | 75.1 |
| MS.gene26305.t1 | MTR_7g072140 | 31.250 | 144 | 85 | 4 | 17 | 155 | 33 | 167 | 3.15e-15 | 70.1 |
| MS.gene26305.t1 | MTR_7g072250 | 31.496 | 127 | 69 | 4 | 34 | 155 | 83 | 196 | 9.56e-12 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26305.t1 | AT2G30270 | 39.007 | 141 | 71 | 2 | 14 | 154 | 16 | 141 | 2.87e-23 | 90.5 |
| MS.gene26305.t1 | AT5G01750 | 27.778 | 144 | 90 | 5 | 17 | 155 | 37 | 171 | 2.03e-11 | 59.3 |
Find 41 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTGCGACTTAAAAGTAAT+TGG | 0.281487 | 5.4:+59715971 | MS.gene26305:CDS |
| TGGGACTTGGAAATGTTATA+AGG | 0.293104 | 5.4:+59715832 | MS.gene26305:CDS |
| GGGAAGTGGTGATGAGAATA+AGG | 0.296657 | 5.4:+59715853 | MS.gene26305:CDS |
| GGAAATGGAAACTTCAGATT+TGG | 0.309392 | 5.4:+59714292 | None:intergenic |
| AGCAAGAGTTTGGTATCCTT+TGG | 0.337774 | 5.4:-59714473 | None:intergenic |
| CATTTCTAAAGATGGTGATT+TGG | 0.375415 | 5.4:+59716018 | MS.gene26305:CDS |
| ATTGGAATCAAGCAAGAGTT+TGG | 0.382566 | 5.4:-59714483 | None:intergenic |
| AATTACCCGAGTTGAGTTAG+AGG | 0.392515 | 5.4:+59715910 | MS.gene26305:CDS |
| GATGAAGAGGAGTTGGGATT+GGG | 0.425075 | 5.4:-59714449 | None:intergenic |
| AGATGAAGAGGAGTTGGGAT+TGG | 0.436379 | 5.4:-59714450 | None:intergenic |
| AGTTGGGATTGGGTGGTTGA+CGG | 0.438138 | 5.4:-59714439 | None:intergenic |
| TGCTGCATGATCTCTTGAAA+GGG | 0.441228 | 5.4:-59715997 | None:intergenic |
| CTTTGGAGATGAAGAGGAGT+TGG | 0.446851 | 5.4:-59714456 | None:intergenic |
| TTAGCGTTTGCTGATGCATC+GGG | 0.457884 | 5.4:+59714395 | MS.gene26305:CDS |
| TTCTAAAGATGGTGATTTGG+TGG | 0.461988 | 5.4:+59716021 | MS.gene26305:CDS |
| GAAGAACAGAGGATTATCAT+TGG | 0.463772 | 5.4:-59714501 | None:intergenic |
| TTTGGAGATGAAGAGGAGTT+GGG | 0.467401 | 5.4:-59714455 | None:intergenic |
| GGGACTTGGAAATGTTATAA+GGG | 0.475852 | 5.4:+59715833 | MS.gene26305:CDS |
| TTGGAACCGAAAAGATCGAT+TGG | 0.478169 | 5.4:-59714344 | None:intergenic |
| GATTGGGATGTGTTGATCTT+CGG | 0.483082 | 5.4:-59714327 | None:intergenic |
| ATCGGGTAACATAGTCTTCA+AGG | 0.483954 | 5.4:+59714412 | MS.gene26305:CDS |
| TGGAACCGAAAAGATCGATT+GGG | 0.488185 | 5.4:-59714343 | None:intergenic |
| ATGCTGCATGATCTCTTGAA+AGG | 0.498992 | 5.4:-59715998 | None:intergenic |
| TAAGATTCCACGTGGAACTC+CGG | 0.515660 | 5.4:-59714375 | None:intergenic |
| AGATGGTGATTTGGTGGCAC+AGG | 0.523496 | 5.4:+59716027 | MS.gene26305:CDS |
| CTTAGCGTTTGCTGATGCAT+CGG | 0.528232 | 5.4:+59714394 | MS.gene26305:CDS |
| TGGAAATGTTATAAGGGAAG+TGG | 0.531416 | 5.4:+59715839 | MS.gene26305:CDS |
| TCATGCAGCATTTCTAAAGA+TGG | 0.534516 | 5.4:+59716010 | MS.gene26305:CDS |
| GGTATCCTTTGGAGATGAAG+AGG | 0.545069 | 5.4:-59714462 | None:intergenic |
| AAAACACCTCTAACTCAACT+CGG | 0.575143 | 5.4:-59715916 | None:intergenic |
| CAACTCCTCTTCATCTCCAA+AGG | 0.576391 | 5.4:+59714457 | MS.gene26305:CDS |
| GAAGAGGAGTTGGGATTGGG+TGG | 0.577971 | 5.4:-59714446 | None:intergenic |
| AGCTTGTGTTAGAAGTGAAG+AGG | 0.604864 | 5.4:+59715876 | MS.gene26305:CDS |
| AAACACCTCTAACTCAACTC+GGG | 0.609005 | 5.4:-59715915 | None:intergenic |
| GCTGCATGATCTCTTGAAAG+GGG | 0.632578 | 5.4:-59715996 | None:intergenic |
| AAGAGAGACTAACATGATGA+CGG | 0.636080 | 5.4:-59714529 | None:intergenic |
| ACTTCAGATTTGGAGTACAC+AGG | 0.646841 | 5.4:+59714302 | MS.gene26305:CDS |
| AGAGACTAACATGATGACGG+TGG | 0.699942 | 5.4:-59714526 | None:intergenic |
| AAACAAACCGGAGTTCCACG+TGG | 0.713755 | 5.4:+59714368 | MS.gene26305:CDS |
| TGACGGTGGATGAAGAACAG+AGG | 0.729871 | 5.4:-59714512 | None:intergenic |
| GCAAACGCTAAGATTCCACG+TGG | 0.780342 | 5.4:-59714383 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAATACTGATTTAGTTAT+AGG | + | chr5.4:59716151-59716170 | MS.gene26305:intron | 15.0% |
| !!! | TTTTTTTTTTTTGGTAGAAT+GGG | + | chr5.4:59715813-59715832 | MS.gene26305:intron | 15.0% |
| !!! | TTTTTTTTTTTTTGGTAGAA+TGG | + | chr5.4:59715812-59715831 | MS.gene26305:intron | 15.0% |
| !! | AACATAAAAACAAGTTCTTA+TGG | - | chr5.4:59715090-59715109 | None:intergenic | 20.0% |
| !! | AACTCCTAAGAATAAAAATA+AGG | + | chr5.4:59714802-59714821 | MS.gene26305:intron | 20.0% |
| !! | ACAAGTTAAGAAGTTAAAAA+TGG | + | chr5.4:59714839-59714858 | MS.gene26305:intron | 20.0% |
| !! | ACTCCTAAGAATAAAAATAA+GGG | + | chr5.4:59714803-59714822 | MS.gene26305:intron | 20.0% |
| !! | GTTCTTAATTTATTCTAAGT+GGG | - | chr5.4:59715189-59715208 | None:intergenic | 20.0% |
| !! | TGTTCTTAATTTATTCTAAG+TGG | - | chr5.4:59715190-59715209 | None:intergenic | 20.0% |
| !! | TTAAATCAAAACTGCAAATA+CGG | - | chr5.4:59715696-59715715 | None:intergenic | 20.0% |
| !! | TTCTTCTTTATTATTCAATC+TGG | + | chr5.4:59714561-59714580 | MS.gene26305:intron | 20.0% |
| !!! | ATCCCTTTTAAAAAAGAAAA+AGG | + | chr5.4:59714981-59715000 | MS.gene26305:intron | 20.0% |
| !!! | CAATCATTATATTTTTGCAT+TGG | + | chr5.4:59715208-59715227 | MS.gene26305:intron | 20.0% |
| !!! | GATGTTATTTTGATGAATTA+TGG | + | chr5.4:59716434-59716453 | MS.gene26305:intron | 20.0% |
| !!! | GGATTGTAAATGTTATTTTT+AGG | + | chr5.4:59716455-59716474 | MS.gene26305:intron | 20.0% |
| !!! | TCCCTTTTAAAAAAGAAAAA+GGG | + | chr5.4:59714982-59715001 | MS.gene26305:intron | 20.0% |
| !!! | TCCCTTTTTCTTTTTTAAAA+GGG | - | chr5.4:59714986-59715005 | None:intergenic | 20.0% |
| !!! | TTTTGAGTAAACAATCATTT+TGG | - | chr5.4:59715757-59715776 | None:intergenic | 20.0% |
| ! | AACATATCATAGAACAACAT+CGG | - | chr5.4:59715060-59715079 | None:intergenic | 25.0% |
| !! | AAGTCTTCAAAATTTAAGAC+CGG | - | chr5.4:59715029-59715048 | None:intergenic | 25.0% |
| !! | AATTTTAAATCATCTCCTCA+AGG | - | chr5.4:59714885-59714904 | None:intergenic | 25.0% |
| !! | TTTATGTTCTTCAAGCATTT+TGG | - | chr5.4:59715285-59715304 | None:intergenic | 25.0% |
| !! | TTTGAAATGAACTGTTATCT+AGG | - | chr5.4:59716117-59716136 | None:intergenic | 25.0% |
| !!! | AATACTGATTTAGTTATAGG+TGG | + | chr5.4:59716154-59716173 | MS.gene26305:intron | 25.0% |
| !!! | GTCCCTTTTTCTTTTTTAAA+AGG | - | chr5.4:59714987-59715006 | None:intergenic | 25.0% |
| !!! | TGACCCTTATTTTTATTCTT+AGG | - | chr5.4:59714809-59714828 | None:intergenic | 25.0% |
| !!! | TGTATGCGTGTATTTTTTTT+TGG | + | chr5.4:59716206-59716225 | MS.gene26305:intron | 25.0% |
| !!! | TTTTTGGTCAAATAGTCTAT+TGG | + | chr5.4:59716222-59716241 | MS.gene26305:intron | 25.0% |
| AAAAATAAGGGTCATGCTAA+GGG | + | chr5.4:59714815-59714834 | MS.gene26305:intron | 30.0% | |
| AAGAAATTTGTGCGAGATAT+TGG | + | chr5.4:59715492-59715511 | MS.gene26305:intron | 30.0% | |
| AATCAAGCAATTAACTCGAA+TGG | + | chr5.4:59714696-59714715 | MS.gene26305:intron | 30.0% | |
| ACAAGGAAATTTGATGTGTT+GGG | - | chr5.4:59716305-59716324 | None:intergenic | 30.0% | |
| ACCATATGAGTTGTACTTAT+GGG | + | chr5.4:59716329-59716348 | MS.gene26305:intron | 30.0% | |
| AGAAATTTGTGCGAGATATT+GGG | + | chr5.4:59715493-59715512 | MS.gene26305:intron | 30.0% | |
| AGTAATAAACAGTCTTACAG+CGG | - | chr5.4:59714623-59714642 | None:intergenic | 30.0% | |
| GCTAAACTTTACTTAACTTC+CGG | + | chr5.4:59714776-59714795 | MS.gene26305:intron | 30.0% | |
| TAAAAATAAGGGTCATGCTA+AGG | + | chr5.4:59714814-59714833 | MS.gene26305:intron | 30.0% | |
| TACAAGGAAATTTGATGTGT+TGG | - | chr5.4:59716306-59716325 | None:intergenic | 30.0% | |
| TACCATATGAGTTGTACTTA+TGG | + | chr5.4:59716328-59716347 | MS.gene26305:intron | 30.0% | |
| TGTTCTATGATATGTTCTTG+AGG | + | chr5.4:59715064-59715083 | MS.gene26305:intron | 30.0% | |
| TTTATTCTTAGGAGTTTGAC+CGG | - | chr5.4:59714798-59714817 | None:intergenic | 30.0% | |
| ! | CATTTCTAAAGATGGTGATT+TGG | + | chr5.4:59716018-59716037 | MS.gene26305:CDS | 30.0% |
| ! | GTTTTTATGTTCTATCCCAT+TGG | + | chr5.4:59715099-59715118 | MS.gene26305:intron | 30.0% |
| ! | TTTTGTTCTAGCATTGTAGA+TGG | + | chr5.4:59715305-59715324 | MS.gene26305:intron | 30.0% |
| !! | AATCATAAGTTTTGTCCTTG+AGG | + | chr5.4:59714867-59714886 | MS.gene26305:intron | 30.0% |
| !! | ACATTAAGTGTTGGTAAGTA+GGG | + | chr5.4:59716257-59716276 | MS.gene26305:intron | 30.0% |
| !! | CGTATTTTAAATAGGCAACA+AGG | + | chr5.4:59716359-59716378 | MS.gene26305:intron | 30.0% |
| !! | GCTATCTGCGTATTTTAAAT+AGG | + | chr5.4:59716351-59716370 | MS.gene26305:intron | 30.0% |
| AAAACACCTCTAACTCAACT+CGG | - | chr5.4:59715919-59715938 | None:intergenic | 35.0% | |
| AAGAGAGACTAACATGATGA+CGG | - | chr5.4:59714532-59714551 | None:intergenic | 35.0% | |
| ACTTACCAACACTTAATGTG+TGG | - | chr5.4:59716256-59716275 | None:intergenic | 35.0% | |
| AGTGTTCTCCAATGTTCTTT+AGG | - | chr5.4:59715164-59715183 | None:intergenic | 35.0% | |
| ATCAGAGAGAAAATTGGTTG+GGG | + | chr5.4:59715345-59715364 | MS.gene26305:intron | 35.0% | |
| ATCCAACTCAGGTTATGATT+AGG | - | chr5.4:59714735-59714754 | None:intergenic | 35.0% | |
| ATTGGAATCAAGCAAGAGTT+TGG | - | chr5.4:59714486-59714505 | None:intergenic | 35.0% | |
| CAACTCATATGGTAACTACA+AGG | - | chr5.4:59716322-59716341 | None:intergenic | 35.0% | |
| CAAGGAAATTTGATGTGTTG+GGG | - | chr5.4:59716304-59716323 | None:intergenic | 35.0% | |
| CATCAGAGAGAAAATTGGTT+GGG | + | chr5.4:59715344-59715363 | MS.gene26305:intron | 35.0% | |
| CATTGTAGATGGTACCTATT+AGG | + | chr5.4:59715316-59715335 | MS.gene26305:intron | 35.0% | |
| CTTACCAACACTTAATGTGT+GGG | - | chr5.4:59716255-59716274 | None:intergenic | 35.0% | |
| GAAATGATCGAGACTTTGTT+CGG | - | chr5.4:59714663-59714682 | None:intergenic | 35.0% | |
| GAACAAAGTCTCGATCATTT+CGG | + | chr5.4:59714662-59714681 | MS.gene26305:intron | 35.0% | |
| GAAGAACAGAGGATTATCAT+TGG | - | chr5.4:59714504-59714523 | None:intergenic | 35.0% | |
| GCAATTAACTCGAATGGTTA+AGG | + | chr5.4:59714702-59714721 | MS.gene26305:intron | 35.0% | |
| GCTTGCGACTTAAAAGTAAT+TGG | + | chr5.4:59715971-59715990 | MS.gene26305:CDS | 35.0% | |
| GGGACTTGGAAATGTTATAA+GGG | + | chr5.4:59715833-59715852 | MS.gene26305:CDS | 35.0% | |
| GTAGATCACACTTAAGATTG+AGG | - | chr5.4:59715401-59715420 | None:intergenic | 35.0% | |
| GTGTTCTCCAATGTTCTTTA+GGG | - | chr5.4:59715163-59715182 | None:intergenic | 35.0% | |
| TATAACAGAGTTAGACCATC+CGG | + | chr5.4:59715007-59715026 | MS.gene26305:intron | 35.0% | |
| TCGCACAAATTTCTTAAACG+AGG | - | chr5.4:59715487-59715506 | None:intergenic | 35.0% | |
| TGCATTGGAGTAAAACTACA+TGG | + | chr5.4:59715223-59715242 | MS.gene26305:intron | 35.0% | |
| TGGAAATGTTATAAGGGAAG+TGG | + | chr5.4:59715839-59715858 | MS.gene26305:CDS | 35.0% | |
| TGGGACTTGGAAATGTTATA+AGG | + | chr5.4:59715832-59715851 | MS.gene26305:CDS | 35.0% | |
| TTCGGTTCCAAAAAACAAAC+CGG | + | chr5.4:59714356-59714375 | MS.gene26305:CDS | 35.0% | |
| ! | AACCAATTTTCTCTCTGATG+GGG | - | chr5.4:59715344-59715363 | None:intergenic | 35.0% |
| ! | ATGTTCTTCAAGCATTTTGG+TGG | - | chr5.4:59715282-59715301 | None:intergenic | 35.0% |
| ! | CAACCAATTTTCTCTCTGAT+GGG | - | chr5.4:59715345-59715364 | None:intergenic | 35.0% |
| ! | CTGTTATCTAGGATCATCAA+CGG | - | chr5.4:59716106-59716125 | None:intergenic | 35.0% |
| ! | CTTCAAAATTTAAGACCGGA+TGG | - | chr5.4:59715025-59715044 | None:intergenic | 35.0% |
| ! | TCATGCAGCATTTCTAAAGA+TGG | + | chr5.4:59716010-59716029 | MS.gene26305:CDS | 35.0% |
| ! | TTCTAAAGATGGTGATTTGG+TGG | + | chr5.4:59716021-59716040 | MS.gene26305:CDS | 35.0% |
| !! | AGAGGGATTAAGTGTTGATA+AGG | + | chr5.4:59715589-59715608 | MS.gene26305:intron | 35.0% |
| !! | CACATTAAGTGTTGGTAAGT+AGG | + | chr5.4:59716256-59716275 | MS.gene26305:intron | 35.0% |
| !! | TGTTCTTCAAGCATTTTGGT+GGG | - | chr5.4:59715281-59715300 | None:intergenic | 35.0% |
| !!! | TGGCACATGTTTTAGTTGTT+TGG | + | chr5.4:59716174-59716193 | MS.gene26305:intron | 35.0% |
| !!! | TTTTTTGGTAGAATGGGACT+TGG | + | chr5.4:59715819-59715838 | MS.gene26305:intron | 35.0% |
| AAACACCTCTAACTCAACTC+GGG | - | chr5.4:59715918-59715937 | None:intergenic | 40.0% | |
| ACACTTAATGTGTGGGATAC+TGG | - | chr5.4:59716248-59716267 | None:intergenic | 40.0% | |
| AGCAAGAGTTTGGTATCCTT+TGG | - | chr5.4:59714476-59714495 | None:intergenic | 40.0% | |
| AGCTTGTGTTAGAAGTGAAG+AGG | + | chr5.4:59715876-59715895 | MS.gene26305:CDS | 40.0% | |
| AGTGAGACCTTTGGACTTAT+AGG | - | chr5.4:59715373-59715392 | None:intergenic | 40.0% | |
| ATCGGGTAACATAGTCTTCA+AGG | + | chr5.4:59714412-59714431 | MS.gene26305:CDS | 40.0% | |
| ATGCTGCATGATCTCTTGAA+AGG | - | chr5.4:59716001-59716020 | None:intergenic | 40.0% | |
| CAACTCAGGTTATGATTAGG+TGG | - | chr5.4:59714732-59714751 | None:intergenic | 40.0% | |
| CACCTAATCATAACCTGAGT+TGG | + | chr5.4:59714730-59714749 | MS.gene26305:intron | 40.0% | |
| CCATCAGAGAGAAAATTGGT+TGG | + | chr5.4:59715343-59715362 | MS.gene26305:intron | 40.0% | |
| GAATGACATGGATTCCATGT+CGG | + | chr5.4:59715126-59715145 | MS.gene26305:intron | 40.0% | |
| GCCCATAAGTACAACTCATA+TGG | - | chr5.4:59716333-59716352 | None:intergenic | 40.0% | |
| GTATCCCACACATTAAGTGT+TGG | + | chr5.4:59716248-59716267 | MS.gene26305:intron | 40.0% | |
| TACCCCATCAGAGAGAAAAT+TGG | + | chr5.4:59715339-59715358 | MS.gene26305:intron | 40.0% | |
| TATGTTCTATCCCATTGGAG+TGG | + | chr5.4:59715104-59715123 | MS.gene26305:intron | 40.0% | |
| TATTTAAGTACCCCCCATTG+TGG | + | chr5.4:59715659-59715678 | MS.gene26305:intron | 40.0% | |
| TCAGAGAGAAAATTGGTTGG+GGG | + | chr5.4:59715346-59715365 | MS.gene26305:intron | 40.0% | |
| TGCTGCATGATCTCTTGAAA+GGG | - | chr5.4:59716000-59716019 | None:intergenic | 40.0% | |
| TGGAACCGAAAAGATCGATT+GGG | - | chr5.4:59714346-59714365 | None:intergenic | 40.0% | |
| TTCCGCATTGGAACAATTCT+CGG | + | chr5.4:59714754-59714773 | MS.gene26305:intron | 40.0% | |
| TTGGAACCGAAAAGATCGAT+TGG | - | chr5.4:59714347-59714366 | None:intergenic | 40.0% | |
| TTTGGAGATGAAGAGGAGTT+GGG | - | chr5.4:59714458-59714477 | None:intergenic | 40.0% | |
| ! | AATTACCCGAGTTGAGTTAG+AGG | + | chr5.4:59715910-59715929 | MS.gene26305:CDS | 40.0% |
| ! | ACTTCAGATTTGGAGTACAC+AGG | + | chr5.4:59714302-59714321 | MS.gene26305:CDS | 40.0% |
| ! | CACATCCCAATCGATCTTTT+CGG | + | chr5.4:59714338-59714357 | MS.gene26305:CDS | 40.0% |
| ! | CCAACCAATTTTCTCTCTGA+TGG | - | chr5.4:59715346-59715365 | None:intergenic | 40.0% |
| ! | GATTGGGATGTGTTGATCTT+CGG | - | chr5.4:59714330-59714349 | None:intergenic | 40.0% |
| ! | TGTTGGTAAGTAGGGAATTG+CGG | + | chr5.4:59716265-59716284 | MS.gene26305:intron | 40.0% |
| !!! | GAGTTAGAGGTGTTTTTTGC+TGG | + | chr5.4:59715923-59715942 | MS.gene26305:CDS | 40.0% |
| !!! | TGGAACTCCGGTTTGTTTTT+TGG | - | chr5.4:59714366-59714385 | None:intergenic | 40.0% |
| AGATGAAGAGGAGTTGGGAT+TGG | - | chr5.4:59714453-59714472 | None:intergenic | 45.0% | |
| AGCCGAGAATTGTTCCAATG+CGG | - | chr5.4:59714759-59714778 | None:intergenic | 45.0% | |
| ATGGATTCCATGTCGGAGAA+CGG | + | chr5.4:59715133-59715152 | MS.gene26305:intron | 45.0% | |
| CAACTCCTCTTCATCTCCAA+AGG | + | chr5.4:59714457-59714476 | MS.gene26305:CDS | 45.0% | |
| CCATGTCATTCCACTCCAAT+GGG | - | chr5.4:59715117-59715136 | None:intergenic | 45.0% | |
| CGGTTCTCCCTAAAGAACAT+TGG | + | chr5.4:59715153-59715172 | MS.gene26305:intron | 45.0% | |
| GATGAAGAGGAGTTGGGATT+GGG | - | chr5.4:59714452-59714471 | None:intergenic | 45.0% | |
| GCTGCATGATCTCTTGAAAG+GGG | - | chr5.4:59715999-59716018 | None:intergenic | 45.0% | |
| GTTGATCTTGAATCCCCATG+TGG | + | chr5.4:59715245-59715264 | MS.gene26305:intron | 45.0% | |
| TAAGATTCCACGTGGAACTC+CGG | - | chr5.4:59714378-59714397 | None:intergenic | 45.0% | |
| TCCATGTCATTCCACTCCAA+TGG | - | chr5.4:59715118-59715137 | None:intergenic | 45.0% | |
| ! | CTTAGCGTTTGCTGATGCAT+CGG | + | chr5.4:59714394-59714413 | MS.gene26305:CDS | 45.0% |
| ! | CTTTGGAGATGAAGAGGAGT+TGG | - | chr5.4:59714459-59714478 | None:intergenic | 45.0% |
| ! | GGGAAGTGGTGATGAGAATA+AGG | + | chr5.4:59715853-59715872 | MS.gene26305:CDS | 45.0% |
| ! | GGTATCCTTTGGAGATGAAG+AGG | - | chr5.4:59714465-59714484 | None:intergenic | 45.0% |
| ! | GTGCGAGATATTGGGTTAGA+GGG | + | chr5.4:59715501-59715520 | MS.gene26305:intron | 45.0% |
| ! | GTTGGTAAGTAGGGAATTGC+GGG | + | chr5.4:59716266-59716285 | MS.gene26305:intron | 45.0% |
| ! | TCTCTGATGGGGTACCTAAT+AGG | - | chr5.4:59715333-59715352 | None:intergenic | 45.0% |
| ! | TGTGCGAGATATTGGGTTAG+AGG | + | chr5.4:59715500-59715519 | MS.gene26305:intron | 45.0% |
| ! | TTAGCGTTTGCTGATGCATC+GGG | + | chr5.4:59714395-59714414 | MS.gene26305:CDS | 45.0% |
| !! | AGAGACTAACATGATGACGG+TGG | - | chr5.4:59714529-59714548 | None:intergenic | 45.0% |
| !! | CGTTTTAGCATCCACAATGG+GGG | - | chr5.4:59715673-59715692 | None:intergenic | 45.0% |
| !! | GCGTTTTAGCATCCACAATG+GGG | - | chr5.4:59715674-59715693 | None:intergenic | 45.0% |
| !! | GGCGTTTTAGCATCCACAAT+GGG | - | chr5.4:59715675-59715694 | None:intergenic | 45.0% |
| !! | GTTTTAGCATCCACAATGGG+GGG | - | chr5.4:59715672-59715691 | None:intergenic | 45.0% |
| !!! | AATATGTATTTTTTTTTTTT+TGG | + | chr5.4:59715804-59715823 | MS.gene26305:intron | 5.0% |
| AAACAAACCGGAGTTCCACG+TGG | + | chr5.4:59714368-59714387 | MS.gene26305:CDS | 50.0% | |
| AGTTGGGATTGGGTGGTTGA+CGG | - | chr5.4:59714442-59714461 | None:intergenic | 50.0% | |
| CCCATTGGAGTGGAATGACA+TGG | + | chr5.4:59715114-59715133 | MS.gene26305:intron | 50.0% | |
| GAATCCCCATGTGGCAATGA+TGG | + | chr5.4:59715254-59715273 | MS.gene26305:intron | 50.0% | |
| GAGGTTGTCAGTGAGACCTT+TGG | - | chr5.4:59715382-59715401 | None:intergenic | 50.0% | |
| GCAAACGCTAAGATTCCACG+TGG | - | chr5.4:59714386-59714405 | None:intergenic | 50.0% | |
| TCCAATGCGGAATCCAACTC+AGG | - | chr5.4:59714746-59714765 | None:intergenic | 50.0% | |
| TGACGGTGGATGAAGAACAG+AGG | - | chr5.4:59714515-59714534 | None:intergenic | 50.0% | |
| TGGGGGTCCTATAAGTCCAA+AGG | + | chr5.4:59715363-59715382 | MS.gene26305:intron | 50.0% | |
| TGGGTCCATCATTGCCACAT+GGG | - | chr5.4:59715262-59715281 | None:intergenic | 50.0% | |
| ! | ACCTGAGTTGGATTCCGCAT+TGG | + | chr5.4:59714742-59714761 | MS.gene26305:intron | 50.0% |
| !! | AGATGGTGATTTGGTGGCAC+AGG | + | chr5.4:59716027-59716046 | MS.gene26305:CDS | 50.0% |
| !! | CGGCGTTTTAGCATCCACAA+TGG | - | chr5.4:59715676-59715695 | None:intergenic | 50.0% |
| GAAGAGGAGTTGGGATTGGG+TGG | - | chr5.4:59714449-59714468 | None:intergenic | 55.0% | |
| GGGTCCATCATTGCCACATG+GGG | - | chr5.4:59715261-59715280 | None:intergenic | 55.0% | |
| GTGGGTCCATCATTGCCACA+TGG | - | chr5.4:59715263-59715282 | None:intergenic | 55.0% | |
| GGGAGAACCGTTCTCCGACA+TGG | - | chr5.4:59715143-59715162 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 59714296 | 59716485 | 59714296 | ID=MS.gene26305 |
| chr5.4 | mRNA | 59714296 | 59716485 | 59714296 | ID=MS.gene26305.t1;Parent=MS.gene26305 |
| chr5.4 | exon | 59714296 | 59714538 | 59714296 | ID=MS.gene26305.t1.exon1;Parent=MS.gene26305.t1 |
| chr5.4 | CDS | 59714296 | 59714538 | 59714296 | ID=cds.MS.gene26305.t1;Parent=MS.gene26305.t1 |
| chr5.4 | exon | 59715830 | 59716048 | 59715830 | ID=MS.gene26305.t1.exon2;Parent=MS.gene26305.t1 |
| chr5.4 | CDS | 59715830 | 59716048 | 59715830 | ID=cds.MS.gene26305.t1;Parent=MS.gene26305.t1 |
| chr5.4 | exon | 59716477 | 59716485 | 59716477 | ID=MS.gene26305.t1.exon3;Parent=MS.gene26305.t1 |
| chr5.4 | CDS | 59716477 | 59716485 | 59716477 | ID=cds.MS.gene26305.t1;Parent=MS.gene26305.t1 |
| Gene Sequence |
| Protein sequence |
