Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27481.t1 | XP_003623622.1 | 92.3 | 233 | 13 | 1 | 1 | 228 | 1 | 233 | 1.90E-115 | 425.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27481.t1 | Q54760 | 61.4 | 184 | 70 | 1 | 44 | 227 | 2 | 184 | 2.4e-63 | 243.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27481.t1 | G7KY52 | 92.3 | 233 | 13 | 1 | 1 | 228 | 1 | 233 | 1.3e-115 | 425.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049351 | MS.gene27481 | 0.817728 | 2.84E-52 | -1.69E-46 |
| MS.gene049427 | MS.gene27481 | 0.847781 | 9.31E-60 | -1.69E-46 |
| MS.gene049661 | MS.gene27481 | 0.814659 | 1.38E-51 | -1.69E-46 |
| MS.gene049662 | MS.gene27481 | 0.808957 | 2.40E-50 | -1.69E-46 |
| MS.gene049760 | MS.gene27481 | 0.827334 | 1.66E-54 | -1.69E-46 |
| MS.gene050076 | MS.gene27481 | 0.834489 | 2.91E-56 | -1.69E-46 |
| MS.gene050432 | MS.gene27481 | 0.817066 | 4.00E-52 | -1.69E-46 |
| MS.gene050767 | MS.gene27481 | 0.870041 | 1.97E-66 | -1.69E-46 |
| MS.gene050770 | MS.gene27481 | 0.873666 | 1.23E-67 | -1.69E-46 |
| MS.gene050783 | MS.gene27481 | 0.827826 | 1.26E-54 | -1.69E-46 |
| MS.gene05101 | MS.gene27481 | 0.871069 | 9.04E-67 | -1.69E-46 |
| MS.gene051471 | MS.gene27481 | 0.81862 | 1.78E-52 | -1.69E-46 |
| MS.gene051877 | MS.gene27481 | 0.818982 | 1.47E-52 | -1.69E-46 |
| MS.gene052078 | MS.gene27481 | 0.822531 | 2.25E-53 | -1.69E-46 |
| MS.gene052271 | MS.gene27481 | 0.812334 | 4.47E-51 | -1.69E-46 |
| MS.gene052310 | MS.gene27481 | 0.81449 | 1.50E-51 | -1.69E-46 |
| MS.gene052326 | MS.gene27481 | 0.85855 | 7.63E-63 | -1.69E-46 |
| MS.gene052379 | MS.gene27481 | 0.814192 | 1.75E-51 | -1.69E-46 |
| MS.gene053322 | MS.gene27481 | 0.856636 | 2.81E-62 | -1.69E-46 |
| MS.gene054376 | MS.gene27481 | 0.877609 | 5.48E-69 | -1.69E-46 |
| MS.gene05455 | MS.gene27481 | 0.829902 | 3.97E-55 | -1.69E-46 |
| MS.gene054802 | MS.gene27481 | 0.900863 | 4.78E-78 | -1.69E-46 |
| MS.gene054803 | MS.gene27481 | 0.899605 | 1.68E-77 | -1.69E-46 |
| MS.gene054804 | MS.gene27481 | 0.901352 | 2.92E-78 | -1.69E-46 |
| MS.gene055254 | MS.gene27481 | 0.820221 | 7.69E-53 | -1.69E-46 |
| MS.gene055277 | MS.gene27481 | 0.831667 | 1.47E-55 | -1.69E-46 |
| MS.gene055390 | MS.gene27481 | 0.807269 | 5.49E-50 | -1.69E-46 |
| MS.gene055397 | MS.gene27481 | 0.852685 | 3.92E-61 | -1.69E-46 |
| MS.gene055428 | MS.gene27481 | 0.802582 | 5.24E-49 | -1.69E-46 |
| MS.gene055499 | MS.gene27481 | 0.849434 | 3.24E-60 | -1.69E-46 |
| MS.gene055647 | MS.gene27481 | 0.834558 | 2.80E-56 | -1.69E-46 |
| MS.gene055896 | MS.gene27481 | 0.817809 | 2.72E-52 | -1.69E-46 |
| MS.gene056083 | MS.gene27481 | 0.801755 | 7.75E-49 | -1.69E-46 |
| MS.gene056410 | MS.gene27481 | 0.803807 | 2.92E-49 | -1.69E-46 |
| MS.gene056452 | MS.gene27481 | 0.833268 | 5.88E-56 | -1.69E-46 |
| MS.gene057011 | MS.gene27481 | 0.839747 | 1.32E-57 | -1.69E-46 |
| MS.gene057123 | MS.gene27481 | 0.83622 | 1.06E-56 | -1.69E-46 |
| MS.gene057129 | MS.gene27481 | 0.86274 | 4.09E-64 | -1.69E-46 |
| MS.gene057146 | MS.gene27481 | 0.845777 | 3.29E-59 | -1.69E-46 |
| MS.gene057295 | MS.gene27481 | 0.821895 | 3.17E-53 | -1.69E-46 |
| MS.gene057416 | MS.gene27481 | 0.817396 | 3.37E-52 | -1.69E-46 |
| MS.gene058019 | MS.gene27481 | 0.820072 | 8.32E-53 | -1.69E-46 |
| MS.gene058293 | MS.gene27481 | 0.83703 | 6.61E-57 | -1.69E-46 |
| MS.gene058660 | MS.gene27481 | 0.874916 | 4.64E-68 | -1.69E-46 |
| MS.gene059326 | MS.gene27481 | 0.847797 | 9.21E-60 | -1.69E-46 |
| MS.gene059536 | MS.gene27481 | 0.854852 | 9.34E-62 | -1.69E-46 |
| MS.gene059676 | MS.gene27481 | 0.806634 | 7.48E-50 | -1.69E-46 |
| MS.gene059960 | MS.gene27481 | 0.881926 | 1.60E-70 | -1.69E-46 |
| MS.gene061200 | MS.gene27481 | 0.888045 | 8.36E-73 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27481.t1 | MTR_7g073250 | 89.700 | 233 | 19 | 1 | 1 | 228 | 1 | 233 | 2.28e-138 | 387 |
| MS.gene27481.t1 | MTR_3g083530 | 26.984 | 189 | 124 | 4 | 44 | 228 | 62 | 240 | 1.36e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27481.t1 | AT3G08740 | 68.122 | 229 | 70 | 3 | 2 | 228 | 9 | 236 | 6.63e-111 | 318 |
| MS.gene27481.t1 | AT4G26310 | 27.941 | 204 | 136 | 5 | 29 | 227 | 58 | 255 | 1.79e-19 | 84.7 |
| MS.gene27481.t1 | AT4G26310 | 27.624 | 181 | 120 | 5 | 29 | 204 | 58 | 232 | 1.90e-13 | 68.2 |
Find 63 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGGTGTTCAGTTTGTCTTCA+TGG | 0.248932 | 7.2:-31370323 | MS.gene27481:CDS |
| AGATTTGCGGAGAGAGAAAT+AGG | 0.307200 | 7.2:+31371285 | None:intergenic |
| ACCTTAAGCTTGACTGTTAT+AGG | 0.325039 | 7.2:+31369254 | None:intergenic |
| AAGCTTAAGAATCATCTTAC+TGG | 0.330470 | 7.2:-31370905 | MS.gene27481:CDS |
| GGTTCACCTTGGCGTGTCTT+AGG | 0.336234 | 7.2:-31371068 | MS.gene27481:intron |
| TGGACTGCAATTTGCTGTTA+TGG | 0.343872 | 7.2:-31370020 | MS.gene27481:CDS |
| CTGAGAAAACGGGGATTAGA+AGG | 0.346976 | 7.2:+31371226 | None:intergenic |
| CGATGTGGATCCCGGACTTA+AGG | 0.347949 | 7.2:-31369228 | MS.gene27481:CDS |
| CCTTAAGCTTGACTGTTATA+GGG | 0.349152 | 7.2:+31369255 | None:intergenic |
| GCACCAGTGTCGAGAGTTGC+TGG | 0.378675 | 7.2:+31368692 | None:intergenic |
| GGCTGTGTCACCCTTAAGTC+CGG | 0.390289 | 7.2:+31369217 | None:intergenic |
| TCAGTTTGTCTTCATGGACT+TGG | 0.418509 | 7.2:-31370317 | MS.gene27481:intron |
| AGGGGTGCGAATAGGAAAGT+TGG | 0.419595 | 7.2:+31371246 | None:intergenic |
| CCCTATAACAGTCAAGCTTA+AGG | 0.429085 | 7.2:-31369255 | MS.gene27481:CDS |
| AAATATAGGCGAGGAAATAC+TGG | 0.432665 | 7.2:-31368645 | MS.gene27481:CDS |
| GGTACTAATATCGAAGTTGA+TGG | 0.439639 | 7.2:-31371089 | MS.gene27481:CDS |
| CGTCTGGATGAATCAGAAGT+TGG | 0.444955 | 7.2:-31370072 | MS.gene27481:CDS |
| GGATTAGAAGGGGTGCGAAT+AGG | 0.455811 | 7.2:+31371238 | None:intergenic |
| TCTAGTAATGACATTAAAGT+TGG | 0.456626 | 7.2:-31371110 | MS.gene27481:CDS |
| GATGTGGATCCCGGACTTAA+GGG | 0.461872 | 7.2:-31369227 | MS.gene27481:CDS |
| CAGAACAAAGTGGCTGAAAG+AGG | 0.464057 | 7.2:-31370046 | MS.gene27481:CDS |
| GACCTTCAGAGCTGGAAGTT+CGG | 0.469297 | 7.2:-31370867 | MS.gene27481:intron |
| GTGGGGCTTACTGAGAAAAC+GGG | 0.474683 | 7.2:+31371216 | None:intergenic |
| AGTGGGGCTTACTGAGAAAA+CGG | 0.475773 | 7.2:+31371215 | None:intergenic |
| GTCCCGCTCTTTGTAAATAT+AGG | 0.478856 | 7.2:-31368659 | MS.gene27481:CDS |
| GTCTGGATGAATCAGAAGTT+GGG | 0.495506 | 7.2:-31370071 | MS.gene27481:CDS |
| AAGGTAGTCGATGTGGATCC+CGG | 0.496614 | 7.2:-31369236 | MS.gene27481:CDS |
| ATACTGGTTGATACAAGATC+GGG | 0.497423 | 7.2:-31368629 | MS.gene27481:CDS |
| CTTCATGTGAAACCTGGAAA+AGG | 0.505634 | 7.2:-31370947 | MS.gene27481:CDS |
| CGCCTATATTTACAAAGAGC+GGG | 0.509532 | 7.2:+31368657 | None:intergenic |
| TGCAATTTGCTGTTATGGAA+TGG | 0.524366 | 7.2:-31370015 | MS.gene27481:CDS |
| TACATACGAGGAGACTCGTC+TGG | 0.525138 | 7.2:-31370088 | MS.gene27481:CDS |
| ATAGGAGAGATTGAGCTTCA+AGG | 0.529166 | 7.2:+31371303 | None:intergenic |
| GGTATGAAGAAGAAGATTTG+CGG | 0.536049 | 7.2:+31371272 | None:intergenic |
| GAGTTTCTTCATGTGAAACC+TGG | 0.542138 | 7.2:-31370953 | MS.gene27481:CDS |
| TACCGAACTTCCAGCTCTGA+AGG | 0.553070 | 7.2:+31370865 | None:intergenic |
| AATACTGGTTGATACAAGAT+CGG | 0.557168 | 7.2:-31368630 | MS.gene27481:CDS |
| GTTGAAAAGACCTTCAGAGC+TGG | 0.566337 | 7.2:-31370875 | MS.gene27481:CDS |
| CGACAACACAACATGATAGC+GGG | 0.571198 | 7.2:-31371334 | None:intergenic |
| AAAGTGGCTGAAAGAGGGAA+TGG | 0.571643 | 7.2:-31370040 | MS.gene27481:CDS |
| TGAGAAAACGGGGATTAGAA+GGG | 0.572553 | 7.2:+31371227 | None:intergenic |
| GCTGTGTCACCCTTAAGTCC+GGG | 0.582260 | 7.2:+31369218 | None:intergenic |
| TCGCCTATATTTACAAAGAG+CGG | 0.586804 | 7.2:+31368656 | None:intergenic |
| TTAATATGAAATCTTAAGCA+CGG | 0.595292 | 7.2:+31368594 | None:intergenic |
| GGTGCGAATAGGAAAGTTGG+AGG | 0.597541 | 7.2:+31371249 | None:intergenic |
| TGCGAATAGGAAAGTTGGAG+GGG | 0.600775 | 7.2:+31371251 | None:intergenic |
| AAGCCAGCAACTCTCGACAC+TGG | 0.613570 | 7.2:-31368695 | MS.gene27481:CDS |
| AGAACAAAGTGGCTGAAAGA+GGG | 0.614001 | 7.2:-31370045 | MS.gene27481:CDS |
| GTGCGAATAGGAAAGTTGGA+GGG | 0.615958 | 7.2:+31371250 | None:intergenic |
| TGACGAAGCTGATATAGTCA+AGG | 0.625089 | 7.2:-31370371 | MS.gene27481:CDS |
| CAAGCTTAAGGTAGTCGATG+TGG | 0.633779 | 7.2:-31369243 | MS.gene27481:CDS |
| AAACAGTTCACATATAAAGA+CGG | 0.640018 | 7.2:-31370343 | MS.gene27481:CDS |
| GAGAAAACGGGGATTAGAAG+GGG | 0.646810 | 7.2:+31371228 | None:intergenic |
| GTATTACCTAAGACACGCCA+AGG | 0.651100 | 7.2:+31371062 | None:intergenic |
| TCGAAGTTGATGGTTCACCT+TGG | 0.655283 | 7.2:-31371079 | MS.gene27481:CDS |
| CTTAAGGGTGACACAGCCCA+AGG | 0.655404 | 7.2:-31369212 | MS.gene27481:intron |
| GAAAAGGTGCTGCATTTGTG+AGG | 0.657241 | 7.2:-31370931 | MS.gene27481:CDS |
| ACGACAACACAACATGATAG+CGG | 0.677593 | 7.2:-31371335 | None:intergenic |
| GCTCTTTGTAAATATAGGCG+AGG | 0.683752 | 7.2:-31368654 | MS.gene27481:CDS |
| ATATTATCAGAGTACATACG+AGG | 0.704907 | 7.2:-31370100 | MS.gene27481:intron |
| TACTGGTTGATACAAGATCG+GGG | 0.717486 | 7.2:-31368628 | MS.gene27481:CDS |
| AAGTTGGGAACAGAACAAAG+TGG | 0.760887 | 7.2:-31370056 | MS.gene27481:CDS |
| TGGGGCTTACTGAGAAAACG+GGG | 0.761195 | 7.2:+31371217 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGATAAAATAAAAAACTAT+GGG | + | chr7.2:31370206-31370225 | None:intergenic | 10.0% |
| !! | ATTAACAAAGTAAAAATTAA+AGG | + | chr7.2:31369806-31369825 | None:intergenic | 10.0% |
| !! | TAAATATAAAAGCTAAAAAA+AGG | - | chr7.2:31370930-31370949 | MS.gene27481:CDS | 10.0% |
| !! | TTAACAAAGTAAAAATTAAA+GGG | + | chr7.2:31369805-31369824 | None:intergenic | 10.0% |
| !!! | AATTTTTATTAGATTCTTTT+TGG | - | chr7.2:31369219-31369238 | MS.gene27481:CDS | 10.0% |
| !!! | ATTTTTATTAGATTCTTTTT+GGG | - | chr7.2:31369220-31369239 | MS.gene27481:CDS | 10.0% |
| !! | AAATTAACAGTATAAGAAAA+TGG | + | chr7.2:31370748-31370767 | None:intergenic | 15.0% |
| !! | ATTGTTATATGAGTAAATAA+GGG | - | chr7.2:31370086-31370105 | MS.gene27481:CDS | 15.0% |
| !! | CAAGATAAAATAAAAAACTA+TGG | + | chr7.2:31370207-31370226 | None:intergenic | 15.0% |
| !! | TATTGTTATATGAGTAAATA+AGG | - | chr7.2:31370085-31370104 | MS.gene27481:CDS | 15.0% |
| !!! | AATTTTATGTTAAACACTTA+AGG | + | chr7.2:31370518-31370537 | None:intergenic | 15.0% |
| !!! | AGTGTTTAACATAAAATTTT+AGG | - | chr7.2:31370520-31370539 | MS.gene27481:intron | 15.0% |
| !!! | TTTAACATAAAATTTTAGGA+TGG | - | chr7.2:31370524-31370543 | MS.gene27481:intron | 15.0% |
| !!! | TTTTTATTAGATTCTTTTTG+GGG | - | chr7.2:31369221-31369240 | MS.gene27481:CDS | 15.0% |
| !! | AAAAGATTTCACAAAAACTA+TGG | + | chr7.2:31369097-31369116 | None:intergenic | 20.0% |
| !! | AATATGAATTTACTTCGAAA+TGG | - | chr7.2:31369162-31369181 | MS.gene27481:intron | 20.0% |
| !! | AATGTTATATACATACTTTG+GGG | - | chr7.2:31370274-31370293 | MS.gene27481:intron | 20.0% |
| !! | ACAATGTTATATACATACTT+TGG | - | chr7.2:31370272-31370291 | MS.gene27481:intron | 20.0% |
| !! | ACTAAAATGATTAAGTAATC+TGG | - | chr7.2:31370808-31370827 | MS.gene27481:intron | 20.0% |
| !! | ATAATGAGTAGTGATTAAAA+TGG | - | chr7.2:31368928-31368947 | MS.gene27481:intron | 20.0% |
| !! | CAATGTTATATACATACTTT+GGG | - | chr7.2:31370273-31370292 | MS.gene27481:intron | 20.0% |
| !! | TGTATTCTTGTAATAGTTAA+TGG | - | chr7.2:31370413-31370432 | MS.gene27481:intron | 20.0% |
| !! | TTGTTATATGAGTAAATAAG+GGG | - | chr7.2:31370087-31370106 | MS.gene27481:CDS | 20.0% |
| !!! | CTAACTTTTCATTATAATCA+AGG | + | chr7.2:31369729-31369748 | None:intergenic | 20.0% |
| ! | AAACAGTTCACATATAAAGA+CGG | - | chr7.2:31369586-31369605 | MS.gene27481:intron | 25.0% |
| ! | AATCTGGCATTAAAAAACAA+GGG | - | chr7.2:31370861-31370880 | MS.gene27481:intron | 25.0% |
| ! | AATGACTAATTACTTCCTAT+CGG | - | chr7.2:31369702-31369721 | MS.gene27481:intron | 25.0% |
| ! | AATTGTTGGAATAGAGAAAT+TGG | + | chr7.2:31369763-31369782 | None:intergenic | 25.0% |
| ! | AGATTGTGAAATATGCATTT+AGG | + | chr7.2:31370846-31370865 | None:intergenic | 25.0% |
| ! | ATACAAGATAACAACAGAAA+AGG | + | chr7.2:31369516-31369535 | None:intergenic | 25.0% |
| ! | ATATTCATTACCATCAATAC+TGG | + | chr7.2:31370006-31370025 | None:intergenic | 25.0% |
| ! | ATCAGCAAAAAAGATTCATT+AGG | + | chr7.2:31370579-31370598 | None:intergenic | 25.0% |
| ! | GATTGTGAAATATGCATTTA+GGG | + | chr7.2:31370845-31370864 | None:intergenic | 25.0% |
| ! | GTGTTAGTATTATTCAATTG+CGG | - | chr7.2:31369322-31369341 | MS.gene27481:intron | 25.0% |
| ! | GTTGCTTCTAATTTCTTATT+GGG | - | chr7.2:31369485-31369504 | MS.gene27481:intron | 25.0% |
| ! | TAAATGCATATTTCACAATC+TGG | - | chr7.2:31370845-31370864 | MS.gene27481:intron | 25.0% |
| ! | TCATAAATTATGCGATGAAA+AGG | + | chr7.2:31369948-31369967 | None:intergenic | 25.0% |
| ! | TCTAGTAATGACATTAAAGT+TGG | - | chr7.2:31368819-31368838 | MS.gene27481:intron | 25.0% |
| ! | TGACATTCAATATATCTAAG+AGG | + | chr7.2:31371068-31371087 | None:intergenic | 25.0% |
| ! | TTGATGTCTTTGAATTTGTA+TGG | - | chr7.2:31370224-31370243 | MS.gene27481:intron | 25.0% |
| !! | GTATTGATGGTAATGAATAT+GGG | - | chr7.2:31370006-31370025 | MS.gene27481:intron | 25.0% |
| !! | TGTTGCTTCTAATTTCTTAT+TGG | - | chr7.2:31369484-31369503 | MS.gene27481:intron | 25.0% |
| !!! | AGTATTGATGGTAATGAATA+TGG | - | chr7.2:31370005-31370024 | MS.gene27481:intron | 25.0% |
| !!! | CTATCAAACCTTTATTTTCT+AGG | - | chr7.2:31369980-31369999 | MS.gene27481:intron | 25.0% |
| !!! | TAAAACACCATTTTGGAAAA+AGG | + | chr7.2:31370337-31370356 | None:intergenic | 25.0% |
| !!! | TTGTTTTTACAGTTTTGCAT+TGG | - | chr7.2:31369116-31369135 | MS.gene27481:intron | 25.0% |
| AAGCTTAAGAATCATCTTAC+TGG | - | chr7.2:31369024-31369043 | MS.gene27481:intron | 30.0% | |
| ACCTACAATGAATTTACAGT+GGG | + | chr7.2:31371009-31371028 | None:intergenic | 30.0% | |
| ACTGAAAGCAAAAGAATTGT+TGG | + | chr7.2:31369777-31369796 | None:intergenic | 30.0% | |
| AGAGATTAGTGGAATTAAGA+AGG | + | chr7.2:31368772-31368791 | None:intergenic | 30.0% | |
| ATATTATCAGAGTACATACG+AGG | - | chr7.2:31369829-31369848 | MS.gene27481:intron | 30.0% | |
| ATATTGAATGTCAAGAGAGT+AGG | - | chr7.2:31371075-31371094 | MS.gene27481:CDS | 30.0% | |
| CAATCTGGCATTAAAAAACA+AGG | - | chr7.2:31370860-31370879 | MS.gene27481:intron | 30.0% | |
| GAAAACAACAAAGAGATTAG+TGG | + | chr7.2:31368783-31368802 | None:intergenic | 30.0% | |
| GAGATTAGTGGAATTAAGAA+GGG | + | chr7.2:31368771-31368790 | None:intergenic | 30.0% | |
| GTAAATGGAATATGATTGAC+AGG | - | chr7.2:31371201-31371220 | MS.gene27481:intron | 30.0% | |
| GTTAGTGAAAAGATGAAAGT+GGG | + | chr7.2:31368734-31368753 | None:intergenic | 30.0% | |
| TACCTACAATGAATTTACAG+TGG | + | chr7.2:31371010-31371029 | None:intergenic | 30.0% | |
| TGTCTTTGAATTTGTATGGT+TGG | - | chr7.2:31370228-31370247 | MS.gene27481:intron | 30.0% | |
| TTAGTGAAAAGATGAAAGTG+GGG | + | chr7.2:31368733-31368752 | None:intergenic | 30.0% | |
| ! | AATACTGGCCTAGAAAATAA+AGG | + | chr7.2:31369991-31370010 | None:intergenic | 30.0% |
| ! | AATACTGGTTGATACAAGAT+CGG | - | chr7.2:31371299-31371318 | MS.gene27481:CDS | 30.0% |
| ! | AATGAAAAGTTAGCCTGATT+AGG | - | chr7.2:31369736-31369755 | MS.gene27481:intron | 30.0% |
| ! | ACTCGTCTGTTTATATTTTC+AGG | - | chr7.2:31370635-31370654 | MS.gene27481:intron | 30.0% |
| ! | ATTTACAGTTAGTTCTCCAA+GGG | + | chr7.2:31371187-31371206 | None:intergenic | 30.0% |
| ! | CTCTAAGTAAAACACCATTT+TGG | + | chr7.2:31370344-31370363 | None:intergenic | 30.0% |
| ! | TATTATTCAATTGCGGATTG+CGG | - | chr7.2:31369329-31369348 | MS.gene27481:intron | 30.0% |
| !! | TTTTGCTGATTAGCATTATG+AGG | - | chr7.2:31370589-31370608 | MS.gene27481:intron | 30.0% |
| AAATATAGGCGAGGAAATAC+TGG | - | chr7.2:31371284-31371303 | MS.gene27481:CDS | 35.0% | |
| AATCAATGCTTTCCTCCATT+GGG | + | chr7.2:31370139-31370158 | None:intergenic | 35.0% | |
| AATGGAATATGATTGACAGG+TGG | - | chr7.2:31371204-31371223 | MS.gene27481:intron | 35.0% | |
| ACACTATAGCATAGCGAAAT+TGG | + | chr7.2:31369371-31369390 | None:intergenic | 35.0% | |
| ACCTTAAGCTTGACTGTTAT+AGG | + | chr7.2:31370678-31370697 | None:intergenic | 35.0% | |
| AGCTAAAAAAAGGACAACCT+AGG | - | chr7.2:31370940-31370959 | MS.gene27481:CDS | 35.0% | |
| ATAAGAAAATGGCATCACCT+TGG | + | chr7.2:31370737-31370756 | None:intergenic | 35.0% | |
| ATTAGTGGAATTAAGAAGGG+TGG | + | chr7.2:31368768-31368787 | None:intergenic | 35.0% | |
| CATTATAATCAAGGACCGAT+AGG | + | chr7.2:31369720-31369739 | None:intergenic | 35.0% | |
| CCTTAAGCTTGACTGTTATA+GGG | + | chr7.2:31370677-31370696 | None:intergenic | 35.0% | |
| CTTGGAGAACTAACTGTAAA+TGG | - | chr7.2:31371186-31371205 | MS.gene27481:intron | 35.0% | |
| GAATTTACTTCGAAATGGCT+TGG | - | chr7.2:31369167-31369186 | MS.gene27481:intron | 35.0% | |
| GCTAAAAAAAGGACAACCTA+GGG | - | chr7.2:31370941-31370960 | MS.gene27481:CDS | 35.0% | |
| GGTACTAATATCGAAGTTGA+TGG | - | chr7.2:31368840-31368859 | MS.gene27481:intron | 35.0% | |
| GGTATGAAGAAGAAGATTTG+CGG | + | chr7.2:31368660-31368679 | None:intergenic | 35.0% | |
| GGTTAGTGAAAAGATGAAAG+TGG | + | chr7.2:31368735-31368754 | None:intergenic | 35.0% | |
| GTTAGACTCTTACAAACGTA+AGG | + | chr7.2:31371039-31371058 | None:intergenic | 35.0% | |
| TAAGAAAATGGCATCACCTT+GGG | + | chr7.2:31370736-31370755 | None:intergenic | 35.0% | |
| TAGAGAAATTGGACCTAATC+AGG | + | chr7.2:31369752-31369771 | None:intergenic | 35.0% | |
| TCCCACTGTAAATTCATTGT+AGG | - | chr7.2:31371005-31371024 | MS.gene27481:intron | 35.0% | |
| TCGCCTATATTTACAAAGAG+CGG | + | chr7.2:31371276-31371295 | None:intergenic | 35.0% | |
| ! | ATACTGGTTGATACAAGATC+GGG | - | chr7.2:31371300-31371319 | MS.gene27481:CDS | 35.0% |
| ! | CATTTACAGTTAGTTCTCCA+AGG | + | chr7.2:31371188-31371207 | None:intergenic | 35.0% |
| ! | GGGCAATAAAAAAGCACAAT+AGG | + | chr7.2:31371151-31371170 | None:intergenic | 35.0% |
| ! | GGGTATTCCTTTTTCCAAAA+TGG | - | chr7.2:31370327-31370346 | MS.gene27481:CDS | 35.0% |
| !! | AGGTTTGATAGTGTGAAAGA+CGG | + | chr7.2:31369971-31369990 | None:intergenic | 35.0% |
| !! | ATCGTGCAAATGGGTTTTAT+CGG | - | chr7.2:31370891-31370910 | MS.gene27481:CDS | 35.0% |
| !! | ATTTTCTAGGCCAGTATTGA+TGG | - | chr7.2:31369993-31370012 | MS.gene27481:intron | 35.0% |
| !! | GGGTTTTATCGGCTAATAAT+TGG | - | chr7.2:31370902-31370921 | MS.gene27481:CDS | 35.0% |
| !! | TCAAAGCATTGACAAGTACA+AGG | - | chr7.2:31370390-31370409 | MS.gene27481:intron | 35.0% |
| !! | TGATGCAATGTGCTATTTGA+GGG | - | chr7.2:31370307-31370326 | MS.gene27481:intron | 35.0% |
| !! | TGCAATTTGCTGTTATGGAA+TGG | - | chr7.2:31369914-31369933 | MS.gene27481:intron | 35.0% |
| !! | TTGATGCAATGTGCTATTTG+AGG | - | chr7.2:31370306-31370325 | MS.gene27481:intron | 35.0% |
| !! | TTTGCATTGGTTAGTGGATT+TGG | - | chr7.2:31369129-31369148 | MS.gene27481:intron | 35.0% |
| !!! | ATTAGATTCTTTTTGGGGCT+AGG | - | chr7.2:31369226-31369245 | MS.gene27481:CDS | 35.0% |
| !!! | TACAGTTTTGCATTGGTTAG+TGG | - | chr7.2:31369123-31369142 | MS.gene27481:intron | 35.0% |
| !!! | TTAGATTCTTTTTGGGGCTA+GGG | - | chr7.2:31369227-31369246 | MS.gene27481:CDS | 35.0% |
| AAGTTGGGAACAGAACAAAG+TGG | - | chr7.2:31369873-31369892 | MS.gene27481:intron | 40.0% | |
| AATTCAATCTGTCCCAATGG+AGG | - | chr7.2:31370124-31370143 | MS.gene27481:intron | 40.0% | |
| AGAACAAAGTGGCTGAAAGA+GGG | - | chr7.2:31369884-31369903 | MS.gene27481:intron | 40.0% | |
| AGATTTGCGGAGAGAGAAAT+AGG | + | chr7.2:31368647-31368666 | None:intergenic | 40.0% | |
| AGCTTCGTCAATCTGTCAAA+AGG | + | chr7.2:31369548-31369567 | None:intergenic | 40.0% | |
| AGTGGGATTTGTCTCTTTGA+TGG | + | chr7.2:31370992-31371011 | None:intergenic | 40.0% | |
| ATAGGAGAGATTGAGCTTCA+AGG | + | chr7.2:31368629-31368648 | None:intergenic | 40.0% | |
| CCAAGGGAATGTAAGACAAA+GGG | + | chr7.2:31371171-31371190 | None:intergenic | 40.0% | |
| CCCTATAACAGTCAAGCTTA+AGG | - | chr7.2:31370674-31370693 | MS.gene27481:intron | 40.0% | |
| CGCCTATATTTACAAAGAGC+GGG | + | chr7.2:31371275-31371294 | None:intergenic | 40.0% | |
| CTTCATGTGAAACCTGGAAA+AGG | - | chr7.2:31368982-31369001 | MS.gene27481:intron | 40.0% | |
| GAATCAATGCTTTCCTCCAT+TGG | + | chr7.2:31370140-31370159 | None:intergenic | 40.0% | |
| GAATGTCAAGAGAGTAGGAT+CGG | - | chr7.2:31371080-31371099 | MS.gene27481:CDS | 40.0% | |
| GAGTTTCTTCATGTGAAACC+TGG | - | chr7.2:31368976-31368995 | MS.gene27481:intron | 40.0% | |
| GCTCTTTGTAAATATAGGCG+AGG | - | chr7.2:31371275-31371294 | MS.gene27481:CDS | 40.0% | |
| GTCCCGCTCTTTGTAAATAT+AGG | - | chr7.2:31371270-31371289 | MS.gene27481:CDS | 40.0% | |
| GTCTGGATGAATCAGAAGTT+GGG | - | chr7.2:31369858-31369877 | MS.gene27481:intron | 40.0% | |
| TCAGTTTGTCTTCATGGACT+TGG | - | chr7.2:31369612-31369631 | MS.gene27481:intron | 40.0% | |
| TCCAAGGGAATGTAAGACAA+AGG | + | chr7.2:31371172-31371191 | None:intergenic | 40.0% | |
| TGACGAAGCTGATATAGTCA+AGG | - | chr7.2:31369558-31369577 | MS.gene27481:intron | 40.0% | |
| TGAGAAAACGGGGATTAGAA+GGG | + | chr7.2:31368705-31368724 | None:intergenic | 40.0% | |
| TGCAATTCAATCTGTCCCAA+TGG | - | chr7.2:31370121-31370140 | MS.gene27481:intron | 40.0% | |
| ! | ACTTGGTATCATCTGGAATC+TGG | - | chr7.2:31369629-31369648 | MS.gene27481:intron | 40.0% |
| ! | TACTGGTTGATACAAGATCG+GGG | - | chr7.2:31371301-31371320 | MS.gene27481:CDS | 40.0% |
| ! | TTCATGGACTTGGTATCATC+TGG | - | chr7.2:31369622-31369641 | MS.gene27481:intron | 40.0% |
| !! | TGGACTGCAATTTGCTGTTA+TGG | - | chr7.2:31369909-31369928 | MS.gene27481:intron | 40.0% |
| !! | TGGTTGTCTGAAGTGTTGAA+TGG | - | chr7.2:31370248-31370267 | MS.gene27481:intron | 40.0% |
| !!! | TAGATTCTTTTTGGGGCTAG+GGG | - | chr7.2:31369228-31369247 | MS.gene27481:CDS | 40.0% |
| AAAGTGGCTGAAAGAGGGAA+TGG | - | chr7.2:31369889-31369908 | MS.gene27481:intron | 45.0% | |
| AAGAAGGGTGGTTAGAGAAG+AGG | + | chr7.2:31368756-31368775 | None:intergenic | 45.0% | |
| AGTGGGGCTTACTGAGAAAA+CGG | + | chr7.2:31368717-31368736 | None:intergenic | 45.0% | |
| CAAGCTTAAGGTAGTCGATG+TGG | - | chr7.2:31370686-31370705 | MS.gene27481:intron | 45.0% | |
| CAGAACAAAGTGGCTGAAAG+AGG | - | chr7.2:31369883-31369902 | MS.gene27481:intron | 45.0% | |
| CCCTTTGTCTTACATTCCCT+TGG | - | chr7.2:31371168-31371187 | MS.gene27481:intron | 45.0% | |
| CGGTGTTCAGTTTGTCTTCA+TGG | - | chr7.2:31369606-31369625 | MS.gene27481:intron | 45.0% | |
| CGTCTGGATGAATCAGAAGT+TGG | - | chr7.2:31369857-31369876 | MS.gene27481:intron | 45.0% | |
| CTGAGAAAACGGGGATTAGA+AGG | + | chr7.2:31368706-31368725 | None:intergenic | 45.0% | |
| GAGAAAACGGGGATTAGAAG+GGG | + | chr7.2:31368704-31368723 | None:intergenic | 45.0% | |
| GGAATATGATTGACAGGTGG+TGG | - | chr7.2:31371207-31371226 | MS.gene27481:intron | 45.0% | |
| GTATTACCTAAGACACGCCA+AGG | + | chr7.2:31368870-31368889 | None:intergenic | 45.0% | |
| GTGCGAATAGGAAAGTTGGA+GGG | + | chr7.2:31368682-31368701 | None:intergenic | 45.0% | |
| GTTGAAAAGACCTTCAGAGC+TGG | - | chr7.2:31369054-31369073 | MS.gene27481:intron | 45.0% | |
| TGCGAATAGGAAAGTTGGAG+GGG | + | chr7.2:31368681-31368700 | None:intergenic | 45.0% | |
| ! | ACAAATGCAGCACCTTTTCC+AGG | + | chr7.2:31368997-31369016 | None:intergenic | 45.0% |
| ! | CAATTGCGGATTGCGGAAAA+TGG | - | chr7.2:31369336-31369355 | MS.gene27481:intron | 45.0% |
| ! | GCGCTGCTATTTGACAACAT+TGG | - | chr7.2:31369395-31369414 | MS.gene27481:intron | 45.0% |
| !! | ATGCATAGCTTGCTAGGCAT+AGG | - | chr7.2:31370489-31370508 | MS.gene27481:intron | 45.0% |
| !! | GAAAAGGTGCTGCATTTGTG+AGG | - | chr7.2:31368998-31369017 | MS.gene27481:intron | 45.0% |
| !! | TCGAAGTTGATGGTTCACCT+TGG | - | chr7.2:31368850-31368869 | MS.gene27481:intron | 45.0% |
| !! | TGCATAGCTTGCTAGGCATA+GGG | - | chr7.2:31370490-31370509 | MS.gene27481:intron | 45.0% |
| !! | TTGCGTATGCATAGCTTGCT+AGG | - | chr7.2:31370483-31370502 | MS.gene27481:intron | 45.0% |
| AAGGTAGTCGATGTGGATCC+CGG | - | chr7.2:31370693-31370712 | MS.gene27481:intron | 50.0% | |
| GACCTTCAGAGCTGGAAGTT+CGG | - | chr7.2:31369062-31369081 | MS.gene27481:intron | 50.0% | |
| GATGTGGATCCCGGACTTAA+GGG | - | chr7.2:31370702-31370721 | MS.gene27481:intron | 50.0% | |
| GGAGTGCGAATCGTGCAAAT+GGG | - | chr7.2:31370882-31370901 | MS.gene27481:CDS | 50.0% | |
| GGTGCGAATAGGAAAGTTGG+AGG | + | chr7.2:31368683-31368702 | None:intergenic | 50.0% | |
| GTGGGGCTTACTGAGAAAAC+GGG | + | chr7.2:31368716-31368735 | None:intergenic | 50.0% | |
| TACATACGAGGAGACTCGTC+TGG | - | chr7.2:31369841-31369860 | MS.gene27481:intron | 50.0% | |
| TGGGGCTTACTGAGAAAACG+GGG | + | chr7.2:31368715-31368734 | None:intergenic | 50.0% | |
| ! | AGGGGTGCGAATAGGAAAGT+TGG | + | chr7.2:31368686-31368705 | None:intergenic | 50.0% |
| ! | CTCTTTGATGGATCCTGCCA+AGG | + | chr7.2:31370980-31370999 | None:intergenic | 50.0% |
| ! | GGATTAGAAGGGGTGCGAAT+AGG | + | chr7.2:31368694-31368713 | None:intergenic | 50.0% |
| ! | TACCGAACTTCCAGCTCTGA+AGG | + | chr7.2:31369067-31369086 | None:intergenic | 50.0% |
| ! | TTGATGGATCCTGCCAAGGT+GGG | + | chr7.2:31370976-31370995 | None:intergenic | 50.0% |
| ! | TTGCGGATTGCGGAAAATGG+AGG | - | chr7.2:31369339-31369358 | MS.gene27481:intron | 50.0% |
| ! | TTTGATGGATCCTGCCAAGG+TGG | + | chr7.2:31370977-31370996 | None:intergenic | 50.0% |
| !!! | TTTTTGGGGCTAGGGGTAGA+GGG | - | chr7.2:31369235-31369254 | MS.gene27481:CDS | 50.0% |
| AAGCCAGCAACTCTCGACAC+TGG | - | chr7.2:31371234-31371253 | MS.gene27481:CDS | 55.0% | |
| AGGGTATAAAGCCCCCACCT+TGG | - | chr7.2:31370960-31370979 | MS.gene27481:intron | 55.0% | |
| CGATGTGGATCCCGGACTTA+AGG | - | chr7.2:31370701-31370720 | MS.gene27481:intron | 55.0% | |
| CTTAAGGGTGACACAGCCCA+AGG | - | chr7.2:31370717-31370736 | MS.gene27481:intron | 55.0% | |
| GCTGTGTCACCCTTAAGTCC+GGG | + | chr7.2:31370714-31370733 | None:intergenic | 55.0% | |
| GGCTGTGTCACCCTTAAGTC+CGG | + | chr7.2:31370715-31370734 | None:intergenic | 55.0% | |
| GGTTCACCTTGGCGTGTCTT+AGG | - | chr7.2:31368861-31368880 | MS.gene27481:intron | 55.0% | |
| TATAAAGCCCCCACCTTGGC+AGG | - | chr7.2:31370964-31370983 | MS.gene27481:intron | 55.0% | |
| ! | AGGTGGGGGCTTTATACCCT+AGG | + | chr7.2:31370960-31370979 | None:intergenic | 55.0% |
| ! | GGGAGTGCGAATCGTGCAAA+TGG | - | chr7.2:31370881-31370900 | MS.gene27481:CDS | 55.0% |
| ! | TGATGGATCCTGCCAAGGTG+GGG | + | chr7.2:31370975-31370994 | None:intergenic | 55.0% |
| !!! | CTTTTTGGGGCTAGGGGTAG+AGG | - | chr7.2:31369234-31369253 | MS.gene27481:CDS | 55.0% |
| GATGGATCCTGCCAAGGTGG+GGG | + | chr7.2:31370974-31370993 | None:intergenic | 60.0% | |
| ! | GCACCAGTGTCGAGAGTTGC+TGG | + | chr7.2:31371240-31371259 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 31368607 | 31371344 | 31368607 | ID=MS.gene27481 |
| chr7.2 | mRNA | 31368607 | 31371344 | 31368607 | ID=MS.gene27481.t1;Parent=MS.gene27481 |
| chr7.2 | exon | 31371227 | 31371344 | 31371227 | ID=MS.gene27481.t1.exon1;Parent=MS.gene27481.t1 |
| chr7.2 | CDS | 31371227 | 31371344 | 31371227 | ID=cds.MS.gene27481.t1;Parent=MS.gene27481.t1 |
| chr7.2 | exon | 31371069 | 31371146 | 31371069 | ID=MS.gene27481.t1.exon2;Parent=MS.gene27481.t1 |
| chr7.2 | CDS | 31371069 | 31371146 | 31371069 | ID=cds.MS.gene27481.t1;Parent=MS.gene27481.t1 |
| chr7.2 | exon | 31370868 | 31370974 | 31370868 | ID=MS.gene27481.t1.exon3;Parent=MS.gene27481.t1 |
| chr7.2 | CDS | 31370868 | 31370974 | 31370868 | ID=cds.MS.gene27481.t1;Parent=MS.gene27481.t1 |
| chr7.2 | exon | 31370318 | 31370395 | 31370318 | ID=MS.gene27481.t1.exon4;Parent=MS.gene27481.t1 |
| chr7.2 | CDS | 31370318 | 31370395 | 31370318 | ID=cds.MS.gene27481.t1;Parent=MS.gene27481.t1 |
| chr7.2 | exon | 31370011 | 31370112 | 31370011 | ID=MS.gene27481.t1.exon5;Parent=MS.gene27481.t1 |
| chr7.2 | CDS | 31370011 | 31370112 | 31370011 | ID=cds.MS.gene27481.t1;Parent=MS.gene27481.t1 |
| chr7.2 | exon | 31369213 | 31369294 | 31369213 | ID=MS.gene27481.t1.exon6;Parent=MS.gene27481.t1 |
| chr7.2 | CDS | 31369213 | 31369294 | 31369213 | ID=cds.MS.gene27481.t1;Parent=MS.gene27481.t1 |
| chr7.2 | exon | 31368607 | 31368728 | 31368607 | ID=MS.gene27481.t1.exon7;Parent=MS.gene27481.t1 |
| chr7.2 | CDS | 31368607 | 31368728 | 31368607 | ID=cds.MS.gene27481.t1;Parent=MS.gene27481.t1 |
| Gene Sequence |
| Protein sequence |
