Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28312.t1 | AES89032.2 | 96.5 | 550 | 19 | 0 | 1 | 550 | 44 | 593 | 2.80E-303 | 1050.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28312.t1 | P21885 | 36.6 | 484 | 295 | 4 | 68 | 547 | 7 | 482 | 2.9e-86 | 320.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28312.t1 | G7JEX4 | 96.5 | 550 | 19 | 0 | 1 | 550 | 44 | 593 | 2.0e-303 | 1050.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049907 | MS.gene28312 | 0.816437 | 5.53E-52 | -1.69E-46 |
| MS.gene050301 | MS.gene28312 | 0.807049 | 6.11E-50 | -1.69E-46 |
| MS.gene050520 | MS.gene28312 | 0.80271 | 4.93E-49 | -1.69E-46 |
| MS.gene051255 | MS.gene28312 | 0.837778 | 4.25E-57 | -1.69E-46 |
| MS.gene051360 | MS.gene28312 | 0.821003 | 5.09E-53 | -1.69E-46 |
| MS.gene051387 | MS.gene28312 | 0.813584 | 2.38E-51 | -1.69E-46 |
| MS.gene052485 | MS.gene28312 | 0.810724 | 1.00E-50 | -1.69E-46 |
| MS.gene053169 | MS.gene28312 | 0.824318 | 8.61E-54 | -1.69E-46 |
| MS.gene05335 | MS.gene28312 | 0.821437 | 4.04E-53 | -1.69E-46 |
| MS.gene053813 | MS.gene28312 | 0.858408 | 8.41E-63 | -1.69E-46 |
| MS.gene054010 | MS.gene28312 | 0.870468 | 1.43E-66 | -1.69E-46 |
| MS.gene054011 | MS.gene28312 | 0.842022 | 3.33E-58 | -1.69E-46 |
| MS.gene054012 | MS.gene28312 | 0.857824 | 1.25E-62 | -1.69E-46 |
| MS.gene054013 | MS.gene28312 | 0.855594 | 5.68E-62 | -1.69E-46 |
| MS.gene054556 | MS.gene28312 | 0.823735 | 1.18E-53 | -1.69E-46 |
| MS.gene05492 | MS.gene28312 | 0.809015 | 2.33E-50 | -1.69E-46 |
| MS.gene055604 | MS.gene28312 | 0.805676 | 1.19E-49 | -1.69E-46 |
| MS.gene055909 | MS.gene28312 | 0.822263 | 2.60E-53 | -1.69E-46 |
| MS.gene055911 | MS.gene28312 | 0.830625 | 2.64E-55 | -1.69E-46 |
| MS.gene056191 | MS.gene28312 | 0.809147 | 2.18E-50 | -1.69E-46 |
| MS.gene056410 | MS.gene28312 | 0.850171 | 2.02E-60 | -1.69E-46 |
| MS.gene056611 | MS.gene28312 | 0.831354 | 1.75E-55 | -1.69E-46 |
| MS.gene056902 | MS.gene28312 | 0.856162 | 3.88E-62 | -1.69E-46 |
| MS.gene056931 | MS.gene28312 | 0.830521 | 2.80E-55 | -1.69E-46 |
| MS.gene056933 | MS.gene28312 | 0.827934 | 1.19E-54 | -1.69E-46 |
| MS.gene056935 | MS.gene28312 | 0.822156 | 2.75E-53 | -1.69E-46 |
| MS.gene057285 | MS.gene28312 | 0.801981 | 6.97E-49 | -1.69E-46 |
| MS.gene057749 | MS.gene28312 | 0.805942 | 1.05E-49 | -1.69E-46 |
| MS.gene057823 | MS.gene28312 | 0.806264 | 8.95E-50 | -1.69E-46 |
| MS.gene057825 | MS.gene28312 | 0.803224 | 3.86E-49 | -1.69E-46 |
| MS.gene058007 | MS.gene28312 | 0.815526 | 8.84E-52 | -1.69E-46 |
| MS.gene05842 | MS.gene28312 | 0.815002 | 1.16E-51 | -1.69E-46 |
| MS.gene058700 | MS.gene28312 | 0.800549 | 1.37E-48 | -1.69E-46 |
| MS.gene058995 | MS.gene28312 | 0.870178 | 1.78E-66 | -1.69E-46 |
| MS.gene05907 | MS.gene28312 | 0.820511 | 6.60E-53 | -1.69E-46 |
| MS.gene059294 | MS.gene28312 | 0.817092 | 3.94E-52 | -1.69E-46 |
| MS.gene059530 | MS.gene28312 | 0.818105 | 2.33E-52 | -1.69E-46 |
| MS.gene059674 | MS.gene28312 | 0.80242 | 5.66E-49 | -1.69E-46 |
| MS.gene059688 | MS.gene28312 | 0.802949 | 4.40E-49 | -1.69E-46 |
| MS.gene059711 | MS.gene28312 | 0.811713 | 6.10E-51 | -1.69E-46 |
| MS.gene059974 | MS.gene28312 | 0.82104 | 4.99E-53 | -1.69E-46 |
| MS.gene060005 | MS.gene28312 | 0.801092 | 1.06E-48 | -1.69E-46 |
| MS.gene060401 | MS.gene28312 | 0.810215 | 1.29E-50 | -1.69E-46 |
| MS.gene060559 | MS.gene28312 | 0.825408 | 4.76E-54 | -1.69E-46 |
| MS.gene060800 | MS.gene28312 | 0.802171 | 6.37E-49 | -1.69E-46 |
| MS.gene060837 | MS.gene28312 | 0.831021 | 2.11E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28312.t1 | MTR_4g068240 | 96.545 | 550 | 19 | 0 | 1 | 550 | 44 | 593 | 0.0 | 1086 |
| MS.gene28312.t1 | MTR_4g068270 | 96.205 | 527 | 20 | 0 | 24 | 550 | 1 | 527 | 0.0 | 1038 |
| MS.gene28312.t1 | MTR_4g068230 | 85.905 | 525 | 74 | 0 | 26 | 550 | 46 | 570 | 0.0 | 918 |
| MS.gene28312.t1 | MTR_4g117010 | 72.973 | 74 | 20 | 0 | 301 | 374 | 1 | 74 | 7.96e-28 | 106 |
| MS.gene28312.t1 | MTR_5g096240 | 71.622 | 74 | 21 | 0 | 301 | 374 | 1 | 74 | 1.71e-27 | 105 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 128 sgRNAs with CRISPR-Local
Find 332 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAATCTTATGCAGGGATTT+TGG | 0.128030 | 4.4:-38976903 | MS.gene28312:CDS |
| TTCTCTTTGTGCTTCTAATA+TGG | 0.141826 | 4.4:+38978076 | None:intergenic |
| GGATCAAATGCGGGAAAATT+TGG | 0.186056 | 4.4:+38976981 | None:intergenic |
| GAGAGCATCGGTAAGGTTTC+GGG | 0.204150 | 4.4:-38976645 | MS.gene28312:CDS |
| TCCGGCTTACTGTAGGCTTT+TGG | 0.204716 | 4.4:-38976956 | MS.gene28312:CDS |
| TTCCTTCCAATTCTAGTTCC+TGG | 0.222632 | 4.4:+38977465 | None:intergenic |
| AGAGAAGCAGCCAAACTATT+TGG | 0.253568 | 4.4:-38978059 | MS.gene28312:CDS |
| TGCTTCTAATATGGGCCCTT+GGG | 0.269342 | 4.4:+38978085 | None:intergenic |
| TCTCTTTGTGCTTCTAATAT+GGG | 0.276808 | 4.4:+38978077 | None:intergenic |
| GGAGAGCATCGGTAAGGTTT+CGG | 0.279563 | 4.4:-38976646 | MS.gene28312:CDS |
| GGGCTTACAGAAAAGCATTT+TGG | 0.288340 | 4.4:+38980706 | None:intergenic |
| AGCACTGCACTACAAGAATA+TGG | 0.298530 | 4.4:-38978374 | MS.gene28312:CDS |
| CAAAAGAGGTTGTCAAGTTC+TGG | 0.321849 | 4.4:+38978110 | None:intergenic |
| AAGTCCTAGTTACCTGCTTT+TGG | 0.329378 | 4.4:-38977141 | MS.gene28312:CDS |
| ATCACTTATGTACTTAATCT+TGG | 0.332223 | 4.4:-38976849 | MS.gene28312:CDS |
| TTGTGGCGTCACTCCATTAC+AGG | 0.339936 | 4.4:-38977844 | MS.gene28312:intron |
| CAGTTAGATCAGCCCCTTGC+TGG | 0.342704 | 4.4:+38977279 | None:intergenic |
| TGCAATCCAGGAACTAGAAT+TGG | 0.348794 | 4.4:-38977471 | MS.gene28312:CDS |
| TTCCCGCATTTGATCCATTC+CGG | 0.349342 | 4.4:-38976974 | MS.gene28312:CDS |
| CTGAACAAAACTGTGTTGTT+TGG | 0.351270 | 4.4:+38978311 | None:intergenic |
| AGGGCTGAGCTAGGCAGTTC+AGG | 0.364247 | 4.4:+38977302 | None:intergenic |
| GTGCTTCTAATATGGGCCCT+TGG | 0.374043 | 4.4:+38978084 | None:intergenic |
| GAATCATCCGTGAGCTTGTT+GGG | 0.375559 | 4.4:-38976881 | MS.gene28312:CDS |
| TGCATAAGATTTCATTTGCT+TGG | 0.376192 | 4.4:+38976913 | None:intergenic |
| CTCTGATGATCCAAATAGTT+TGG | 0.380194 | 4.4:+38978049 | None:intergenic |
| CAAATATTCTCCCGGTGAAC+AGG | 0.384399 | 4.4:+38977971 | None:intergenic |
| TTCTCAGTAATAACCTCGCC+TGG | 0.386274 | 4.4:+38976579 | None:intergenic |
| TGAACAAAACTGTGTTGTTT+GGG | 0.392616 | 4.4:+38978312 | None:intergenic |
| TGCTTCATTTGCTAATTCAA+TGG | 0.393014 | 4.4:+38977058 | None:intergenic |
| GTGAAAGGGAATGAGATTAC+TGG | 0.394873 | 4.4:+38980742 | None:intergenic |
| TTGCTCCCGATAAAAGCCTT+TGG | 0.398727 | 4.4:+38976808 | None:intergenic |
| GGTAACTAGGACTTGTGCTT+TGG | 0.403915 | 4.4:+38977150 | None:intergenic |
| GAGAATATTTGATTCTTCCT+AGG | 0.405825 | 4.4:-38977959 | MS.gene28312:CDS |
| CTAGCTCAGCCCTCCAGCAA+GGG | 0.409492 | 4.4:-38977292 | MS.gene28312:CDS |
| CCTTGCTGGAGGGCTGAGCT+AGG | 0.410613 | 4.4:+38977293 | None:intergenic |
| GACAACTATAGAAGAAAGTA+AGG | 0.418226 | 4.4:+38976494 | None:intergenic |
| GGAATCATCCGTGAGCTTGT+TGG | 0.421704 | 4.4:-38976882 | MS.gene28312:CDS |
| ATCACTTCACCTACTTATCA+TGG | 0.422929 | 4.4:-38977422 | MS.gene28312:CDS |
| CAGCACCTTCACTTCTTACA+TGG | 0.424209 | 4.4:+38976538 | None:intergenic |
| TCTTCGTTGACTCAACTCAT+AGG | 0.424921 | 4.4:-38978167 | MS.gene28312:CDS |
| GTTGAGCTCTAGCAGCATCT+AGG | 0.428467 | 4.4:+38977114 | None:intergenic |
| ACCGGTATGCCGGGAGGGTA+TGG | 0.433734 | 4.4:+38976609 | None:intergenic |
| GAAGCTCATGGCGCACATCT+AGG | 0.435728 | 4.4:-38977332 | MS.gene28312:CDS |
| AATATCTGAATCACCTGTAA+TGG | 0.437854 | 4.4:+38977831 | None:intergenic |
| CTAGACAAATCATGAGCATA+TGG | 0.438856 | 4.4:+38978137 | None:intergenic |
| GTCGTCTATGCTGCATATGT+CGG | 0.448780 | 4.4:-38977219 | MS.gene28312:CDS |
| AGGCCACTCTGCTGAAGCTC+TGG | 0.449434 | 4.4:+38978281 | None:intergenic |
| TCCCTTTCACTCACAAAAGA+AGG | 0.458252 | 4.4:-38980729 | MS.gene28312:CDS |
| GTCGGGCGACATTGTAGAAA+AGG | 0.463168 | 4.4:-38977201 | MS.gene28312:CDS |
| GCAGGTATTGAATGCAATCC+AGG | 0.470260 | 4.4:-38977483 | MS.gene28312:intron |
| CGGTACTACTTGTGGAGTCC+AGG | 0.473260 | 4.4:-38978009 | MS.gene28312:CDS |
| TTCTCAAGCACTGAGACGCC+AGG | 0.474651 | 4.4:+38977014 | None:intergenic |
| GGGAATGAGATTACTGGAAG+TGG | 0.477131 | 4.4:+38980748 | None:intergenic |
| TTGAGCTCTAGCAGCATCTA+GGG | 0.478114 | 4.4:+38977115 | None:intergenic |
| GCTTGTTTGAATACAATAGC+AGG | 0.480470 | 4.4:+38977080 | None:intergenic |
| TGGAGTCCAGGCAGCAATCA+TGG | 0.480984 | 4.4:-38977997 | MS.gene28312:CDS |
| TCGTCTATGCTGCATATGTC+GGG | 0.483647 | 4.4:-38977218 | MS.gene28312:CDS |
| AATCATGGCAACCTGTTCAC+CGG | 0.483908 | 4.4:-38977982 | MS.gene28312:CDS |
| AGTGAAGGTGCTGATATTAG+TGG | 0.488793 | 4.4:-38976528 | MS.gene28312:CDS |
| ATGGGCAAGAAGAGAGCATT+GGG | 0.489645 | 4.4:-38978355 | MS.gene28312:CDS |
| TTCATGATTATATCGTCAAA+GGG | 0.492162 | 4.4:+38976720 | None:intergenic |
| TCTGTCTTTACGTTGCTGAA+TGG | 0.493382 | 4.4:+38976761 | None:intergenic |
| ATTCATGATTATATCGTCAA+AGG | 0.497429 | 4.4:+38976719 | None:intergenic |
| AAGCAAATGAAATCTTATGC+AGG | 0.499702 | 4.4:-38976911 | MS.gene28312:CDS |
| CCTAGCTCAGCCCTCCAGCA+AGG | 0.500862 | 4.4:-38977293 | MS.gene28312:CDS |
| TGGGATCAATACCGGTATGC+CGG | 0.500968 | 4.4:+38976599 | None:intergenic |
| GCTGATAAATGAGAATTCCT+AGG | 0.508620 | 4.4:+38977942 | None:intergenic |
| TAGTCGGGAATAATGTACTT+AGG | 0.513798 | 4.4:+38977888 | None:intergenic |
| GATGCCAAAAGCAGGTAACT+AGG | 0.520797 | 4.4:+38977137 | None:intergenic |
| GGCATACCGGTATTGATCCC+AGG | 0.521879 | 4.4:-38976597 | MS.gene28312:CDS |
| TGCAAGTAAAAGAAAGGTAA+CGG | 0.522119 | 4.4:-38976673 | MS.gene28312:CDS |
| GCACTGCACTACAAGAATAT+GGG | 0.522979 | 4.4:-38978373 | MS.gene28312:CDS |
| TCCATACCCTCCCGGCATAC+CGG | 0.523246 | 4.4:-38976610 | MS.gene28312:CDS |
| CCGATAAAAGCCTTTGGACA+TGG | 0.526334 | 4.4:+38976814 | None:intergenic |
| GGGATCAATACCGGTATGCC+GGG | 0.526809 | 4.4:+38976600 | None:intergenic |
| GCAAGGCCTCTGTTGTGTCC+AGG | 0.534238 | 4.4:+38978197 | None:intergenic |
| TAGCTCAGCCCTCCAGCAAG+GGG | 0.536029 | 4.4:-38977291 | MS.gene28312:CDS |
| TTTATCAGCTATATCTGCCA+TGG | 0.536681 | 4.4:-38977928 | MS.gene28312:CDS |
| CTGCAAACACCATGATAAGT+AGG | 0.537109 | 4.4:+38977413 | None:intergenic |
| ACCTCGCCTGGGATCAATAC+CGG | 0.537360 | 4.4:+38976591 | None:intergenic |
| CCCAAAAGCCTACAGTAAGC+CGG | 0.544670 | 4.4:+38976955 | None:intergenic |
| GATCCATTCCGGCTTACTGT+AGG | 0.546089 | 4.4:-38976963 | MS.gene28312:CDS |
| CTACTCCATGTAAGAAGTGA+AGG | 0.546727 | 4.4:-38976543 | MS.gene28312:CDS |
| AGGTTGCCATGATTGCTGCC+TGG | 0.546772 | 4.4:+38977991 | None:intergenic |
| ATGAGTTGAGTCAACGAAGA+AGG | 0.546913 | 4.4:+38978170 | None:intergenic |
| TAGATCAGCCCCTTGCTGGA+GGG | 0.547734 | 4.4:+38977283 | None:intergenic |
| TTAGATCAGCCCCTTGCTGG+AGG | 0.549611 | 4.4:+38977282 | None:intergenic |
| AAGCCTACAGTAAGCCGGAA+TGG | 0.550487 | 4.4:+38976960 | None:intergenic |
| CATCTAGGGATGCCAAAAGC+AGG | 0.554864 | 4.4:+38977129 | None:intergenic |
| TTGATTGTTGATGAAGCTCA+TGG | 0.558058 | 4.4:-38977344 | MS.gene28312:CDS |
| CTTGTCAACGGTACTACTTG+TGG | 0.558448 | 4.4:-38978017 | MS.gene28312:CDS |
| TGAGCTTCATCAACAATCAA+AGG | 0.561205 | 4.4:+38977347 | None:intergenic |
| TAAAAGAAAGGTAACGGTGA+AGG | 0.563603 | 4.4:-38976667 | MS.gene28312:CDS |
| TATGGGCAAGAAGAGAGCAT+TGG | 0.566324 | 4.4:-38978356 | MS.gene28312:CDS |
| AGCCGGAATGGATCAAATGC+GGG | 0.568285 | 4.4:+38976972 | None:intergenic |
| CTTATATGTCCATACCCTCC+CGG | 0.569699 | 4.4:-38976618 | MS.gene28312:CDS |
| AGAGCATCGGTAAGGTTTCG+GGG | 0.572265 | 4.4:-38976644 | MS.gene28312:CDS |
| CTTGTTTGAATACAATAGCA+GGG | 0.576223 | 4.4:+38977081 | None:intergenic |
| AGCAAATGAAATCTTATGCA+GGG | 0.576791 | 4.4:-38976910 | MS.gene28312:CDS |
| GAGACATGGTTTCTTGTCAA+CGG | 0.579947 | 4.4:-38978029 | MS.gene28312:CDS |
| CATAGACGACTGAGTAAGAG+AGG | 0.580032 | 4.4:+38977232 | None:intergenic |
| TCAATACCGGTATGCCGGGA+GGG | 0.582437 | 4.4:+38976604 | None:intergenic |
| GGAAGAATCAAATATTCTCC+CGG | 0.585935 | 4.4:+38977963 | None:intergenic |
| TGGGCCCTTGGGGACAAAAG+AGG | 0.593444 | 4.4:+38978096 | None:intergenic |
| GCTTTCAATGCACTGACTAG+AGG | 0.598480 | 4.4:+38978254 | None:intergenic |
| GCTTCTAATATGGGCCCTTG+GGG | 0.599011 | 4.4:+38978086 | None:intergenic |
| GGTGAAGGAGAGCATCGGTA+AGG | 0.604160 | 4.4:-38976652 | MS.gene28312:CDS |
| TCTCAGTAATAACCTCGCCT+GGG | 0.611906 | 4.4:+38976580 | None:intergenic |
| TATTTGGATCATCAGAGACA+TGG | 0.613118 | 4.4:-38978043 | MS.gene28312:CDS |
| AATGATTGGGACATCGCTTG+TGG | 0.614501 | 4.4:-38977861 | MS.gene28312:CDS |
| ATCCAGGAACTAGAATTGGA+AGG | 0.617024 | 4.4:-38977467 | MS.gene28312:CDS |
| ATCATGGCAACCTGTTCACC+GGG | 0.618011 | 4.4:-38977981 | MS.gene28312:CDS |
| TTCAATGCACTGACTAGAGG+AGG | 0.627877 | 4.4:+38978257 | None:intergenic |
| ATTTATACCCAACAAGCTCA+CGG | 0.629934 | 4.4:+38976874 | None:intergenic |
| CTTGTAGAGACCATGTCCAA+AGG | 0.631836 | 4.4:-38976824 | MS.gene28312:CDS |
| AACTGTACAGTCTACTCACA+AGG | 0.639033 | 4.4:-38977261 | MS.gene28312:CDS |
| AAGCCGGAATGGATCAAATG+CGG | 0.644215 | 4.4:+38976971 | None:intergenic |
| TCTCAAGCACTGAGACGCCA+GGG | 0.645174 | 4.4:+38977015 | None:intergenic |
| ACCGGTATTGATCCCAGGCG+AGG | 0.645218 | 4.4:-38976592 | MS.gene28312:CDS |
| TTGAGTCAACGAAGAAGGAG+CGG | 0.647939 | 4.4:+38978175 | None:intergenic |
| ATCAATACCGGTATGCCGGG+AGG | 0.652460 | 4.4:+38976603 | None:intergenic |
| ATGCACTGACTAGAGGAGGT+AGG | 0.654549 | 4.4:+38978261 | None:intergenic |
| TCAACGAAGAAGGAGCGGCA+AGG | 0.655385 | 4.4:+38978180 | None:intergenic |
| ACAACTATAGAAGAAAGTAA+GGG | 0.663858 | 4.4:+38976495 | None:intergenic |
| TCACCAGAGCTTCAGCAGAG+TGG | 0.668418 | 4.4:-38978284 | MS.gene28312:CDS |
| CACTGCACCAGATAAAACCA+TGG | 0.680585 | 4.4:+38977911 | None:intergenic |
| GTAACGGTGAAGGAGAGCAT+CGG | 0.687694 | 4.4:-38976657 | MS.gene28312:CDS |
| GAGCATCGGTAAGGTTTCGG+GGG | 0.694452 | 4.4:-38976643 | MS.gene28312:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAAATAATTTATAAAATT+TGG | - | chr4.4:38977403-38977422 | MS.gene28312:CDS | 0.0% |
| !! | TATAAATTATTTATATATAT+AGG | + | chr4.4:38977398-38977417 | None:intergenic | 0.0% |
| !! | AGTAAAATAGTAAATAAAAA+AGG | + | chr4.4:38976581-38976600 | None:intergenic | 10.0% |
| !! | TATGTAATATATTTATTTAG+TGG | + | chr4.4:38978448-38978467 | None:intergenic | 10.0% |
| !!! | ACATATTTGTAATATTTTAA+TGG | - | chr4.4:38978463-38978482 | MS.gene28312:intron | 10.0% |
| !! | AAAGTATAATATGTTGAATT+GGG | + | chr4.4:38976883-38976902 | None:intergenic | 15.0% |
| !! | ATAAAAATGAAATAAGTGAA+GGG | + | chr4.4:38977690-38977709 | None:intergenic | 15.0% |
| !! | ATATAAAAACAAAACATGTT+CGG | - | chr4.4:38978132-38978151 | MS.gene28312:CDS | 15.0% |
| !! | CTAAAAATGTTTAATTGTAT+TGG | + | chr4.4:38978675-38978694 | None:intergenic | 15.0% |
| !! | TAATATTATGACAGTAAAAT+TGG | - | chr4.4:38977828-38977847 | MS.gene28312:intron | 15.0% |
| !!! | TATTTTCTAAATTGTTTCTT+TGG | - | chr4.4:38977711-38977730 | MS.gene28312:intron | 15.0% |
| !!! | TCTTTAAATTACTATTTTAC+AGG | - | chr4.4:38978846-38978865 | MS.gene28312:intron | 15.0% |
| !!! | TTTTTTTAATAAGTGTGAAA+TGG | - | chr4.4:38976988-38977007 | MS.gene28312:CDS | 15.0% |
| !! | AAAAATCTGCAAAAAATTGA+TGG | - | chr4.4:38979492-38979511 | MS.gene28312:intron | 20.0% |
| !! | AAAACTATATGGAAACATTA+AGG | + | chr4.4:38976646-38976665 | None:intergenic | 20.0% |
| !! | AATCTATTTAGATTGCTTTA+TGG | + | chr4.4:38979578-38979597 | None:intergenic | 20.0% |
| !! | AATGTCTAAAAATAGATAGT+TGG | - | chr4.4:38977465-38977484 | MS.gene28312:CDS | 20.0% |
| !! | ATAGTAAATAAAAAAGGAAC+AGG | + | chr4.4:38976575-38976594 | None:intergenic | 20.0% |
| !! | ATTGTATTGAAAAGTGAAAT+GGG | + | chr4.4:38976807-38976826 | None:intergenic | 20.0% |
| !! | CAAAGTATAATATGTTGAAT+TGG | + | chr4.4:38976884-38976903 | None:intergenic | 20.0% |
| !! | CATAAAAATGAAATAAGTGA+AGG | + | chr4.4:38977691-38977710 | None:intergenic | 20.0% |
| !! | GAAACTTCATATCTATAATA+TGG | + | chr4.4:38977047-38977066 | None:intergenic | 20.0% |
| !! | TAAAAATGAAATAAGTGAAG+GGG | + | chr4.4:38977689-38977708 | None:intergenic | 20.0% |
| !! | TAGAAAAGGAAAAAATATCT+AGG | - | chr4.4:38980061-38980080 | MS.gene28312:intron | 20.0% |
| !! | TATTATACACTAACATATTG+TGG | - | chr4.4:38979436-38979455 | MS.gene28312:intron | 20.0% |
| !! | TATTGTATTGAAAAGTGAAA+TGG | + | chr4.4:38976808-38976827 | None:intergenic | 20.0% |
| !! | TTTAAACTCAAAACATAAAC+TGG | - | chr4.4:38978570-38978589 | MS.gene28312:intron | 20.0% |
| !!! | AAATTGATGGTATAAGAAAT+TGG | - | chr4.4:38979505-38979524 | MS.gene28312:intron | 20.0% |
| !!! | AATATGTAATACCAATTTTG+AGG | + | chr4.4:38979663-38979682 | None:intergenic | 20.0% |
| !!! | ACAACATTTCATTTTATTTC+AGG | + | chr4.4:38978753-38978772 | None:intergenic | 20.0% |
| !!! | AGTGGTAATTTTAATAATAG+TGG | + | chr4.4:38978430-38978449 | None:intergenic | 20.0% |
| !!! | ATTAAGATAAGATTTGGTAA+GGG | - | chr4.4:38977507-38977526 | MS.gene28312:intron | 20.0% |
| !!! | ATTTTTTGCAAGTAAAAGAA+AGG | - | chr4.4:38980569-38980588 | MS.gene28312:intron | 20.0% |
| !!! | GCGAATTATTATTTTTTGAA+TGG | - | chr4.4:38979467-38979486 | MS.gene28312:intron | 20.0% |
| !!! | GTGAAAATTGTTTTCAAATT+AGG | + | chr4.4:38978185-38978204 | None:intergenic | 20.0% |
| !!! | TATTTTTAGACATTTTTTCC+TGG | + | chr4.4:38977459-38977478 | None:intergenic | 20.0% |
| ! | AAAAATGAAATAAGTGAAGG+GGG | + | chr4.4:38977688-38977707 | None:intergenic | 25.0% |
| ! | AAACGTGTTGAAAAACTATA+TGG | + | chr4.4:38976657-38976676 | None:intergenic | 25.0% |
| ! | AAAGTCTAACCATTTGATTA+AGG | - | chr4.4:38977174-38977193 | MS.gene28312:CDS | 25.0% |
| ! | AAGAGAGAACAACATTAAAT+AGG | + | chr4.4:38979713-38979732 | None:intergenic | 25.0% |
| ! | AAGTCTAACCATTTGATTAA+GGG | - | chr4.4:38977175-38977194 | MS.gene28312:CDS | 25.0% |
| ! | AATGAGGAAATACTAATGAA+CGG | + | chr4.4:38978776-38978795 | None:intergenic | 25.0% |
| ! | ACAACTATAGAAGAAAGTAA+GGG | + | chr4.4:38980756-38980775 | None:intergenic | 25.0% |
| ! | ATATGGAAACATTAAGGAAA+TGG | + | chr4.4:38976640-38976659 | None:intergenic | 25.0% |
| ! | ATCACTTATGTACTTAATCT+TGG | - | chr4.4:38980399-38980418 | MS.gene28312:intron | 25.0% |
| ! | ATTCATGATTATATCGTCAA+AGG | + | chr4.4:38980532-38980551 | None:intergenic | 25.0% |
| ! | TAGATATGAAGTTTCCAATA+CGG | - | chr4.4:38977052-38977071 | MS.gene28312:CDS | 25.0% |
| ! | TTAATAATAGTGGTTGAAAG+TGG | + | chr4.4:38978420-38978439 | None:intergenic | 25.0% |
| ! | TTCATGATTATATCGTCAAA+GGG | + | chr4.4:38980531-38980550 | None:intergenic | 25.0% |
| ! | TTTCTTATGATTTCCTGATT+AGG | - | chr4.4:38979623-38979642 | MS.gene28312:intron | 25.0% |
| !! | GATTAAGATAAGATTTGGTA+AGG | - | chr4.4:38977506-38977525 | MS.gene28312:intron | 25.0% |
| !! | TCTATTCTTTCTAGTAACTT+TGG | + | chr4.4:38977342-38977361 | None:intergenic | 25.0% |
| !! | TTTTAAACGGAGTTTAGTTA+AGG | - | chr4.4:38978710-38978729 | MS.gene28312:intron | 25.0% |
| !!! | AGTTGGTAACGTTTATATAT+AGG | - | chr4.4:38977482-38977501 | MS.gene28312:CDS | 25.0% |
| !!! | GAATGACTTTTTCTCTAAAT+AGG | - | chr4.4:38976709-38976728 | MS.gene28312:CDS | 25.0% |
| !!! | GGACAATATTTTTTTGCAAA+TGG | + | chr4.4:38976772-38976791 | None:intergenic | 25.0% |
| !!! | GTTGGTAACGTTTATATATA+GGG | - | chr4.4:38977483-38977502 | MS.gene28312:intron | 25.0% |
| !!! | TATAGTTTTTCAACACGTTT+AGG | - | chr4.4:38976657-38976676 | MS.gene28312:CDS | 25.0% |
| !!! | TTGGTAACGTTTATATATAG+GGG | - | chr4.4:38977484-38977503 | MS.gene28312:intron | 25.0% |
| !!! | TTTTTTACTGTCCTCAAAAT+TGG | - | chr4.4:38979649-38979668 | MS.gene28312:intron | 25.0% |
| AAAATGAAATAAGTGAAGGG+GGG | + | chr4.4:38977687-38977706 | None:intergenic | 30.0% | |
| AAAGGAAAATCAAGATGAGA+AGG | + | chr4.4:38977613-38977632 | None:intergenic | 30.0% | |
| AAGCAAATGAAATCTTATGC+AGG | - | chr4.4:38980337-38980356 | MS.gene28312:intron | 30.0% | |
| AAGTGAAAGAGAGAGAAAAA+TGG | + | chr4.4:38976956-38976975 | None:intergenic | 30.0% | |
| AATATCTGAATCACCTGTAA+TGG | + | chr4.4:38979420-38979439 | None:intergenic | 30.0% | |
| AGCAAATGAAATCTTATGCA+GGG | - | chr4.4:38980338-38980357 | MS.gene28312:intron | 30.0% | |
| AGGAAAAAGACAAACAGAAA+AGG | + | chr4.4:38977631-38977650 | None:intergenic | 30.0% | |
| ATAAAATTTGGCGATGCATA+TGG | - | chr4.4:38977415-38977434 | MS.gene28312:CDS | 30.0% | |
| ATAATATGTTGAATTGGGAG+TGG | + | chr4.4:38976878-38976897 | None:intergenic | 30.0% | |
| ATCCTTTGTCAAAAAAGCTA+AGG | - | chr4.4:38978071-38978090 | MS.gene28312:CDS | 30.0% | |
| ATTTGGATCCCTTAATCAAA+TGG | + | chr4.4:38977186-38977205 | None:intergenic | 30.0% | |
| CAAAACATGTTCGGATAAAA+TGG | - | chr4.4:38978141-38978160 | MS.gene28312:CDS | 30.0% | |
| CAGTAAAAAATCACCTAATC+AGG | + | chr4.4:38979639-38979658 | None:intergenic | 30.0% | |
| CTTGTTTGAATACAATAGCA+GGG | + | chr4.4:38980170-38980189 | None:intergenic | 30.0% | |
| GACAACTATAGAAGAAAGTA+AGG | + | chr4.4:38980757-38980776 | None:intergenic | 30.0% | |
| GAGAATATTTGATTCTTCCT+AGG | - | chr4.4:38979289-38979308 | MS.gene28312:intron | 30.0% | |
| TAAAACAGTCCACTATTATG+TGG | + | chr4.4:38977760-38977779 | None:intergenic | 30.0% | |
| TAATCACAGTTAAACCGTAT+TGG | + | chr4.4:38977069-38977088 | None:intergenic | 30.0% | |
| TAGGACTTAATATTGATGCT+TGG | - | chr4.4:38978643-38978662 | MS.gene28312:intron | 30.0% | |
| TAGGGGATTAAGATAAGATT+TGG | - | chr4.4:38977501-38977520 | MS.gene28312:intron | 30.0% | |
| TCCCGACTATAAAAATGATT+GGG | - | chr4.4:38979374-38979393 | MS.gene28312:intron | 30.0% | |
| TCCTTTGTCAAAAAAGCTAA+GGG | - | chr4.4:38978072-38978091 | MS.gene28312:CDS | 30.0% | |
| TCTCTTTGTGCTTCTAATAT+GGG | + | chr4.4:38979174-38979193 | None:intergenic | 30.0% | |
| TGCAAGTAAAAGAAAGGTAA+CGG | - | chr4.4:38980575-38980594 | MS.gene28312:intron | 30.0% | |
| TGCATAAGATTTCATTTGCT+TGG | + | chr4.4:38980338-38980357 | None:intergenic | 30.0% | |
| TTACTATCACATTGCTTCTT+TGG | - | chr4.4:38976596-38976615 | MS.gene28312:CDS | 30.0% | |
| TTCCCGACTATAAAAATGAT+TGG | - | chr4.4:38979373-38979392 | MS.gene28312:intron | 30.0% | |
| TTCTCTTTGTGCTTCTAATA+TGG | + | chr4.4:38979175-38979194 | None:intergenic | 30.0% | |
| TTGCAAAAAATGCATCTCTA+GGG | + | chr4.4:38980560-38980579 | None:intergenic | 30.0% | |
| ! | AAAACCAGTTTAAAGCATCA+AGG | + | chr4.4:38978536-38978555 | None:intergenic | 30.0% |
| ! | ACTAAGGGCTCATTTAAAAT+GGG | - | chr4.4:38977011-38977030 | MS.gene28312:CDS | 30.0% |
| ! | ACTGTTTTATCTCTCAACAT+TGG | - | chr4.4:38977771-38977790 | MS.gene28312:intron | 30.0% |
| ! | ATGTAACTTGTCAATACTAG+TGG | - | chr4.4:38978250-38978269 | MS.gene28312:CDS | 30.0% |
| ! | TAGATTTTCTAACTCTGACA+CGG | - | chr4.4:38979592-38979611 | MS.gene28312:intron | 30.0% |
| ! | TGAAATGGGTCAATTTTTCT+GGG | + | chr4.4:38976793-38976812 | None:intergenic | 30.0% |
| ! | TGCTTCATTTGCTAATTCAA+TGG | + | chr4.4:38980193-38980212 | None:intergenic | 30.0% |
| ! | TTTACCTTGATGCTTTAAAC+TGG | - | chr4.4:38978529-38978548 | MS.gene28312:intron | 30.0% |
| ! | TTTTTGCTAAAAAGAATCCC+TGG | - | chr4.4:38980216-38980235 | MS.gene28312:intron | 30.0% |
| !! | AATAAGTGTGAAATGGACTA+AGG | - | chr4.4:38976995-38977014 | MS.gene28312:CDS | 30.0% |
| !! | ATAAGTGTGAAATGGACTAA+GGG | - | chr4.4:38976996-38977015 | MS.gene28312:CDS | 30.0% |
| !! | GTAGTTTTACATTTGTTTCC+TGG | + | chr4.4:38977884-38977903 | None:intergenic | 30.0% |
| !! | GTCCCAATCATTTTTATAGT+CGG | + | chr4.4:38979379-38979398 | None:intergenic | 30.0% |
| !! | TCCCAATCATTTTTATAGTC+GGG | + | chr4.4:38979378-38979397 | None:intergenic | 30.0% |
| !! | TGAACAAAACTGTGTTGTTT+GGG | + | chr4.4:38978939-38978958 | None:intergenic | 30.0% |
| !! | TTGATGCTTTAAACTGGTTT+TGG | - | chr4.4:38978535-38978554 | MS.gene28312:intron | 30.0% |
| !!! | TTTAAACTGGTTTTGGTCTT+TGG | - | chr4.4:38978542-38978561 | MS.gene28312:intron | 30.0% |
| AAAAAAGGAACAGGAAGTGA+AGG | + | chr4.4:38976566-38976585 | None:intergenic | 35.0% | |
| AAAAAGGAACAGGAAGTGAA+GGG | + | chr4.4:38976565-38976584 | None:intergenic | 35.0% | |
| AAGAACCTACATGGTACATT+AGG | - | chr4.4:38977099-38977118 | MS.gene28312:CDS | 35.0% | |
| AGAATGCACCAATAGTTGAT+AGG | - | chr4.4:38976919-38976938 | MS.gene28312:CDS | 35.0% | |
| AGAGAAACAACAAGTTAACC+AGG | - | chr4.4:38977863-38977882 | MS.gene28312:CDS | 35.0% | |
| ATAATAGTGGTTGAAAGTGG+AGG | + | chr4.4:38978417-38978436 | None:intergenic | 35.0% | |
| ATCACTTCACCTACTTATCA+TGG | - | chr4.4:38979826-38979845 | MS.gene28312:intron | 35.0% | |
| ATTTATACCCAACAAGCTCA+CGG | + | chr4.4:38980377-38980396 | None:intergenic | 35.0% | |
| CAACTCTTGGGTAAAAAGAT+AGG | - | chr4.4:38978624-38978643 | MS.gene28312:intron | 35.0% | |
| CCTTTGTCAAAAAAGCTAAG+GGG | - | chr4.4:38978073-38978092 | MS.gene28312:CDS | 35.0% | |
| CTAGACAAATCATGAGCATA+TGG | + | chr4.4:38979114-38979133 | None:intergenic | 35.0% | |
| CTCAAAACATAAACTGGTGT+TGG | - | chr4.4:38978576-38978595 | MS.gene28312:intron | 35.0% | |
| CTCTGATGATCCAAATAGTT+TGG | + | chr4.4:38979202-38979221 | None:intergenic | 35.0% | |
| CTGTATGGAGAAAACTCAAT+TGG | + | chr4.4:38977139-38977158 | None:intergenic | 35.0% | |
| CTTCCTTAAGACATGTTTGT+CGG | + | chr4.4:38977251-38977270 | None:intergenic | 35.0% | |
| CTTGCAAAAAATGCATCTCT+AGG | + | chr4.4:38980561-38980580 | None:intergenic | 35.0% | |
| GACTAAGGGCTCATTTAAAA+TGG | - | chr4.4:38977010-38977029 | MS.gene28312:CDS | 35.0% | |
| GCAAATGGCTCAGTTATTAT+GGG | + | chr4.4:38976757-38976776 | None:intergenic | 35.0% | |
| GCTGATAAATGAGAATTCCT+AGG | + | chr4.4:38979309-38979328 | None:intergenic | 35.0% | |
| GCTTGTTTGAATACAATAGC+AGG | + | chr4.4:38980171-38980190 | None:intergenic | 35.0% | |
| GGAAGAATCAAATATTCTCC+CGG | + | chr4.4:38979288-38979307 | None:intergenic | 35.0% | |
| GGTATAAGAAATTGGTATGC+TGG | - | chr4.4:38979513-38979532 | MS.gene28312:intron | 35.0% | |
| TAGTCGGGAATAATGTACTT+AGG | + | chr4.4:38979363-38979382 | None:intergenic | 35.0% | |
| TATTTGGATCATCAGAGACA+TGG | - | chr4.4:38979205-38979224 | MS.gene28312:intron | 35.0% | |
| TCTACGTACATTCAACTCTT+GGG | - | chr4.4:38978612-38978631 | MS.gene28312:intron | 35.0% | |
| TGAGCTTCATCAACAATCAA+AGG | + | chr4.4:38979904-38979923 | None:intergenic | 35.0% | |
| TGCAAAAAATGCATCTCTAG+GGG | + | chr4.4:38980559-38980578 | None:intergenic | 35.0% | |
| TGCAAATGGCTCAGTTATTA+TGG | + | chr4.4:38976758-38976777 | None:intergenic | 35.0% | |
| TGGAGAAAACTCAATTGGAT+AGG | + | chr4.4:38977134-38977153 | None:intergenic | 35.0% | |
| TGGTAAGGGAAGCAATAAAA+TGG | - | chr4.4:38977521-38977540 | MS.gene28312:intron | 35.0% | |
| TTCCTTAAGACATGTTTGTC+GGG | + | chr4.4:38977250-38977269 | None:intergenic | 35.0% | |
| TTTATCAGCTATATCTGCCA+TGG | - | chr4.4:38979320-38979339 | MS.gene28312:intron | 35.0% | |
| ! | ACACGTTTAGGATAGATACT+TGG | - | chr4.4:38976669-38976688 | MS.gene28312:CDS | 35.0% |
| ! | ACTCTACTATTGAGTTTGCT+CGG | - | chr4.4:38977921-38977940 | MS.gene28312:CDS | 35.0% |
| ! | ATAGATACTTGGTGATACAG+TGG | - | chr4.4:38976680-38976699 | MS.gene28312:CDS | 35.0% |
| ! | CTGAACAAAACTGTGTTGTT+TGG | + | chr4.4:38978940-38978959 | None:intergenic | 35.0% |
| ! | GAAATCTTATGCAGGGATTT+TGG | - | chr4.4:38980345-38980364 | MS.gene28312:intron | 35.0% |
| ! | GAATGCACCAATAGTTGATA+GGG | - | chr4.4:38976920-38976939 | MS.gene28312:CDS | 35.0% |
| ! | GCGCATTTTTATAGGGAAAT+TGG | + | chr4.4:38977225-38977244 | None:intergenic | 35.0% |
| ! | GTGAAATGGGTCAATTTTTC+TGG | + | chr4.4:38976794-38976813 | None:intergenic | 35.0% |
| ! | TAAAAGAAAGGTAACGGTGA+AGG | - | chr4.4:38980581-38980600 | MS.gene28312:intron | 35.0% |
| ! | TTGATTGTTGATGAAGCTCA+TGG | - | chr4.4:38979904-38979923 | MS.gene28312:intron | 35.0% |
| !! | AATGCACCAATAGTTGATAG+GGG | - | chr4.4:38976921-38976940 | MS.gene28312:CDS | 35.0% |
| !! | TGTTCTCTCTTTGTTTCTGT+TGG | - | chr4.4:38979722-38979741 | MS.gene28312:intron | 35.0% |
| !!! | ATATCTGCCATGGTTTTATC+TGG | - | chr4.4:38979330-38979349 | MS.gene28312:intron | 35.0% |
| AACCTACATGGTACATTAGG+TGG | - | chr4.4:38977102-38977121 | MS.gene28312:CDS | 40.0% | |
| AACTGTACAGTCTACTCACA+AGG | - | chr4.4:38979987-38980006 | MS.gene28312:intron | 40.0% | |
| ACAGTCCACTATTATGTGGT+TGG | + | chr4.4:38977756-38977775 | None:intergenic | 40.0% | |
| ACCATCTCTATAACAGCTTG+AGG | + | chr4.4:38977965-38977984 | None:intergenic | 40.0% | |
| AGACATAAAATGTCGACACC+AGG | - | chr4.4:38977438-38977457 | MS.gene28312:CDS | 40.0% | |
| AGAGAAGCAGCCAAACTATT+TGG | - | chr4.4:38979189-38979208 | MS.gene28312:intron | 40.0% | |
| AGCACTGCACTACAAGAATA+TGG | - | chr4.4:38978874-38978893 | MS.gene28312:intron | 40.0% | |
| ATCCACCTAATGTACCATGT+AGG | + | chr4.4:38977107-38977126 | None:intergenic | 40.0% | |
| ATCCAGGAACTAGAATTGGA+AGG | - | chr4.4:38979781-38979800 | MS.gene28312:intron | 40.0% | |
| CAAAAGAGGTTGTCAAGTTC+TGG | + | chr4.4:38979141-38979160 | None:intergenic | 40.0% | |
| CAGTCCACTATTATGTGGTT+GGG | + | chr4.4:38977755-38977774 | None:intergenic | 40.0% | |
| CTACTCCATGTAAGAAGTGA+AGG | - | chr4.4:38980705-38980724 | MS.gene28312:intron | 40.0% | |
| CTCAGTTATTATGGGAACGA+GGG | + | chr4.4:38976749-38976768 | None:intergenic | 40.0% | |
| CTCTACGTACATTCAACTCT+TGG | - | chr4.4:38978611-38978630 | MS.gene28312:intron | 40.0% | |
| CTCTTCAGATTCAACTCTTC+TGG | - | chr4.4:38979683-38979702 | MS.gene28312:intron | 40.0% | |
| CTGCAAACACCATGATAAGT+AGG | + | chr4.4:38979838-38979857 | None:intergenic | 40.0% | |
| GAGACATGGTTTCTTGTCAA+CGG | - | chr4.4:38979219-38979238 | MS.gene28312:intron | 40.0% | |
| GCACTGCACTACAAGAATAT+GGG | - | chr4.4:38978875-38978894 | MS.gene28312:intron | 40.0% | |
| GGAAAATCAAGATGAGAAGG+TGG | + | chr4.4:38977610-38977629 | None:intergenic | 40.0% | |
| GGATCAAATGCGGGAAAATT+TGG | + | chr4.4:38980270-38980289 | None:intergenic | 40.0% | |
| GTACCATGTAGGTTCTTCAA+TGG | + | chr4.4:38977096-38977115 | None:intergenic | 40.0% | |
| GTGAAAGGGAATGAGATTAC+TGG | + | chr4.4:38976509-38976528 | None:intergenic | 40.0% | |
| TAGAAGCAACACATGAAAGC+TGG | + | chr4.4:38977582-38977601 | None:intergenic | 40.0% | |
| TCAAAAAAGCTAAGGGGTCA+AGG | - | chr4.4:38978079-38978098 | MS.gene28312:CDS | 40.0% | |
| TCCCTTTCACTCACAAAAGA+AGG | - | chr4.4:38976519-38976538 | MS.gene28312:CDS | 40.0% | |
| TCCTCAAGCTGTTATAGAGA+TGG | - | chr4.4:38977961-38977980 | MS.gene28312:CDS | 40.0% | |
| TCTCCATTGAAGAACCTACA+TGG | - | chr4.4:38977090-38977109 | MS.gene28312:CDS | 40.0% | |
| TCTGTCTTTACGTTGCTGAA+TGG | + | chr4.4:38980490-38980509 | None:intergenic | 40.0% | |
| TGCAATCCAGGAACTAGAAT+TGG | - | chr4.4:38979777-38979796 | MS.gene28312:intron | 40.0% | |
| TTCTCCCAACCACATAATAG+TGG | - | chr4.4:38977748-38977767 | MS.gene28312:intron | 40.0% | |
| ! | AAGTCCTAGTTACCTGCTTT+TGG | - | chr4.4:38980107-38980126 | MS.gene28312:intron | 40.0% |
| ! | AGGGCTCATTTAAAATGGGA+CGG | - | chr4.4:38977015-38977034 | MS.gene28312:CDS | 40.0% |
| ! | ATACTTGGTGATACAGTGGT+TGG | - | chr4.4:38976684-38976703 | MS.gene28312:CDS | 40.0% |
| ! | ATGAGTTGAGTCAACGAAGA+AGG | + | chr4.4:38979081-38979100 | None:intergenic | 40.0% |
| ! | CATGTCCAAAGGCTTTTATC+GGG | - | chr4.4:38980435-38980454 | MS.gene28312:intron | 40.0% |
| ! | CCATGTCCAAAGGCTTTTAT+CGG | - | chr4.4:38980434-38980453 | MS.gene28312:intron | 40.0% |
| ! | GCCTTCTTTTGTGAGTGAAA+GGG | + | chr4.4:38976523-38976542 | None:intergenic | 40.0% |
| !! | AGTAGTGGTTTGATGATGGT+CGG | + | chr4.4:38978351-38978370 | None:intergenic | 40.0% |
| !! | AGTGAAGGTGCTGATATTAG+TGG | - | chr4.4:38980720-38980739 | MS.gene28312:CDS | 40.0% |
| !! | CTCTCTTTGTTTCTGTTGGT+GGG | - | chr4.4:38979726-38979745 | MS.gene28312:intron | 40.0% |
| !! | TCTCTCTTTGTTTCTGTTGG+TGG | - | chr4.4:38979725-38979744 | MS.gene28312:intron | 40.0% |
| !! | TCTTCGTTGACTCAACTCAT+AGG | - | chr4.4:38979081-38979100 | MS.gene28312:intron | 40.0% |
| !! | TTCCTTCCAATTCTAGTTCC+TGG | + | chr4.4:38979786-38979805 | None:intergenic | 40.0% |
| !! | TTTTGGGAGCTTGGTTTATC+AGG | - | chr4.4:38980309-38980328 | MS.gene28312:intron | 40.0% |
| !!! | CCCCTTAGCTTTTTTGACAA+AGG | + | chr4.4:38978076-38978095 | None:intergenic | 40.0% |
| !!! | GGGCTTACAGAAAAGCATTT+TGG | + | chr4.4:38976545-38976564 | None:intergenic | 40.0% |
| AAAAAGCTAAGGGGTCAAGG+TGG | - | chr4.4:38978082-38978101 | MS.gene28312:CDS | 45.0% | |
| AAGCCGGAATGGATCAAATG+CGG | + | chr4.4:38980280-38980299 | None:intergenic | 45.0% | |
| AATCATGGCAACCTGTTCAC+CGG | - | chr4.4:38979266-38979285 | MS.gene28312:intron | 45.0% | |
| AATGATTGGGACATCGCTTG+TGG | - | chr4.4:38979387-38979406 | MS.gene28312:intron | 45.0% | |
| ATAGGGAAATTGGTTGTCCG+AGG | + | chr4.4:38977215-38977234 | None:intergenic | 45.0% | |
| CAAATATTCTCCCGGTGAAC+AGG | + | chr4.4:38979280-38979299 | None:intergenic | 45.0% | |
| CAACCAACAGCTTGTCTGTA+TGG | + | chr4.4:38977154-38977173 | None:intergenic | 45.0% | |
| CACCCGACAAACATGTCTTA+AGG | - | chr4.4:38977245-38977264 | MS.gene28312:CDS | 45.0% | |
| CACTGCACCAGATAAAACCA+TGG | + | chr4.4:38979340-38979359 | None:intergenic | 45.0% | |
| CAGCACCTTCACTTCTTACA+TGG | + | chr4.4:38980713-38980732 | None:intergenic | 45.0% | |
| CATAGACGACTGAGTAAGAG+AGG | + | chr4.4:38980019-38980038 | None:intergenic | 45.0% | |
| CCAGAGTAGTGGTTTGATGA+TGG | + | chr4.4:38978355-38978374 | None:intergenic | 45.0% | |
| CCATCATCAAACCACTACTC+TGG | - | chr4.4:38978352-38978371 | MS.gene28312:CDS | 45.0% | |
| CCGATAAAAGCCTTTGGACA+TGG | + | chr4.4:38980437-38980456 | None:intergenic | 45.0% | |
| CTGAGAGGAAAAAGACGGAA+TGG | + | chr4.4:38977661-38977680 | None:intergenic | 45.0% | |
| CTTAAGACATGTTTGTCGGG+TGG | + | chr4.4:38977247-38977266 | None:intergenic | 45.0% | |
| CTTATATGTCCATACCCTCC+CGG | - | chr4.4:38980630-38980649 | MS.gene28312:intron | 45.0% | |
| CTTGTAGAGACCATGTCCAA+AGG | - | chr4.4:38980424-38980443 | MS.gene28312:intron | 45.0% | |
| CTTGTCAACGGTACTACTTG+TGG | - | chr4.4:38979231-38979250 | MS.gene28312:intron | 45.0% | |
| GATGCCAAAAGCAGGTAACT+AGG | + | chr4.4:38980114-38980133 | None:intergenic | 45.0% | |
| GCTCAGTTATTATGGGAACG+AGG | + | chr4.4:38976750-38976769 | None:intergenic | 45.0% | |
| GGAACGTGTAGGTCAAAATG+AGG | + | chr4.4:38978792-38978811 | None:intergenic | 45.0% | |
| GGGAATGAGATTACTGGAAG+TGG | + | chr4.4:38976503-38976522 | None:intergenic | 45.0% | |
| GGGATCCAAATCTCTTACCT+CGG | - | chr4.4:38977195-38977214 | MS.gene28312:CDS | 45.0% | |
| GGTAACTAGGACTTGTGCTT+TGG | + | chr4.4:38980101-38980120 | None:intergenic | 45.0% | |
| GTCGTCTATGCTGCATATGT+CGG | - | chr4.4:38980029-38980048 | MS.gene28312:intron | 45.0% | |
| GTTGTCCGAGGTAAGAGATT+TGG | + | chr4.4:38977203-38977222 | None:intergenic | 45.0% | |
| TCGTCTATGCTGCATATGTC+GGG | - | chr4.4:38980030-38980049 | MS.gene28312:intron | 45.0% | |
| TCTCAGTAATAACCTCGCCT+GGG | + | chr4.4:38980671-38980690 | None:intergenic | 45.0% | |
| TCTCCATACAGACAAGCTGT+TGG | - | chr4.4:38977148-38977167 | MS.gene28312:CDS | 45.0% | |
| TGAGTGCCCCTATCAACTAT+TGG | + | chr4.4:38976930-38976949 | None:intergenic | 45.0% | |
| TGCTTCTAATATGGGCCCTT+GGG | + | chr4.4:38979166-38979185 | None:intergenic | 45.0% | |
| TGGTTGAAAGTGGAGGTTGT+TGG | + | chr4.4:38978410-38978429 | None:intergenic | 45.0% | |
| TTCCCGCATTTGATCCATTC+CGG | - | chr4.4:38980274-38980293 | MS.gene28312:intron | 45.0% | |
| TTCTCAGTAATAACCTCGCC+TGG | + | chr4.4:38980672-38980691 | None:intergenic | 45.0% | |
| TTGAGTCAACGAAGAAGGAG+CGG | + | chr4.4:38979076-38979095 | None:intergenic | 45.0% | |
| TTGCTCCCGATAAAAGCCTT+TGG | + | chr4.4:38980443-38980462 | None:intergenic | 45.0% | |
| ! | AAAGACGGAATGGTTTGCAG+AGG | + | chr4.4:38977651-38977670 | None:intergenic | 45.0% |
| ! | ACAACCTCTTTTGTCCCCAA+GGG | - | chr4.4:38979148-38979167 | MS.gene28312:intron | 45.0% |
| ! | CATTTTCCTGGACACAACAG+AGG | - | chr4.4:38979045-38979064 | MS.gene28312:intron | 45.0% |
| ! | GAATCATCCGTGAGCTTGTT+GGG | - | chr4.4:38980367-38980386 | MS.gene28312:intron | 45.0% |
| ! | GCTGCGAGTTTTCATTTTCC+TGG | - | chr4.4:38979033-38979052 | MS.gene28312:intron | 45.0% |
| ! | GGCCTTCTTTTGTGAGTGAA+AGG | + | chr4.4:38976524-38976543 | None:intergenic | 45.0% |
| ! | TATGGGCAAGAAGAGAGCAT+TGG | - | chr4.4:38978892-38978911 | MS.gene28312:intron | 45.0% |
| ! | TCGGGTGGCGCATTTTTATA+GGG | + | chr4.4:38977232-38977251 | None:intergenic | 45.0% |
| ! | TTCCGTCTTTTTCCTCTCAG+TGG | - | chr4.4:38977661-38977680 | MS.gene28312:intron | 45.0% |
| ! | TTGAGCTCTAGCAGCATCTA+GGG | + | chr4.4:38980136-38980155 | None:intergenic | 45.0% |
| !! | ATGGGCAAGAAGAGAGCATT+GGG | - | chr4.4:38978893-38978912 | MS.gene28312:intron | 45.0% |
| !! | GCAGGTATTGAATGCAATCC+AGG | - | chr4.4:38979765-38979784 | MS.gene28312:intron | 45.0% |
| !! | GCTTTCAATGCACTGACTAG+AGG | + | chr4.4:38978997-38979016 | None:intergenic | 45.0% |
| !! | TGGTTGTTGGTGGTGTTCAA+AGG | + | chr4.4:38978326-38978345 | None:intergenic | 45.0% |
| !! | TTCAATGCACTGACTAGAGG+AGG | + | chr4.4:38978994-38979013 | None:intergenic | 45.0% |
| !! | TTGTTGGTGGTGTTCAAAGG+TGG | + | chr4.4:38978323-38978342 | None:intergenic | 45.0% |
| !!! | TATATAATTATGATTTTAAA+CGG | - | chr4.4:38978697-38978716 | MS.gene28312:intron | 5.0% |
| AAGCCTACAGTAAGCCGGAA+TGG | + | chr4.4:38980291-38980310 | None:intergenic | 50.0% | |
| AAGTGGAGGTTGTTGGCAGA+CGG | + | chr4.4:38978403-38978422 | None:intergenic | 50.0% | |
| AGCCGGAATGGATCAAATGC+GGG | + | chr4.4:38980279-38980298 | None:intergenic | 50.0% | |
| ATCATGGCAACCTGTTCACC+GGG | - | chr4.4:38979267-38979286 | MS.gene28312:intron | 50.0% | |
| ATGATGGTCGGAGTGGTTGT+TGG | + | chr4.4:38978339-38978358 | None:intergenic | 50.0% | |
| CATCTAGGGATGCCAAAAGC+AGG | + | chr4.4:38980122-38980141 | None:intergenic | 50.0% | |
| CCCAAAAGCCTACAGTAAGC+CGG | + | chr4.4:38980296-38980315 | None:intergenic | 50.0% | |
| GATCCATTCCGGCTTACTGT+AGG | - | chr4.4:38980285-38980304 | MS.gene28312:intron | 50.0% | |
| GCTTCTAATATGGGCCCTTG+GGG | + | chr4.4:38979165-38979184 | None:intergenic | 50.0% | |
| GGAATCATCCGTGAGCTTGT+TGG | - | chr4.4:38980366-38980385 | MS.gene28312:intron | 50.0% | |
| GGCCACTGAGAGGAAAAAGA+CGG | + | chr4.4:38977666-38977685 | None:intergenic | 50.0% | |
| GTCGGGCGACATTGTAGAAA+AGG | - | chr4.4:38980047-38980066 | MS.gene28312:intron | 50.0% | |
| GTGCTTCTAATATGGGCCCT+TGG | + | chr4.4:38979167-38979186 | None:intergenic | 50.0% | |
| GTGTTCAAAGGTGGATGGAG+TGG | + | chr4.4:38978314-38978333 | None:intergenic | 50.0% | |
| TACACGTTCCTTCACTGCAC+CGG | - | chr4.4:38978802-38978821 | MS.gene28312:intron | 50.0% | |
| TGCTACTGCCTGACAAAACC+CGG | + | chr4.4:38978824-38978843 | None:intergenic | 50.0% | |
| TGCTCGGAGACAAGCAAATG+AGG | - | chr4.4:38977937-38977956 | MS.gene28312:CDS | 50.0% | |
| TGGGATCAATACCGGTATGC+CGG | + | chr4.4:38980652-38980671 | None:intergenic | 50.0% | |
| TTGTGGCGTCACTCCATTAC+AGG | - | chr4.4:38979404-38979423 | MS.gene28312:intron | 50.0% | |
| ! | CCGGCTTACTGTAGGCTTTT+GGG | - | chr4.4:38980293-38980312 | MS.gene28312:intron | 50.0% |
| ! | CGCAGCATTTTCTTCAGCTG+AGG | + | chr4.4:38979019-38979038 | None:intergenic | 50.0% |
| ! | GACAACCTCTTTTGTCCCCA+AGG | - | chr4.4:38979147-38979166 | MS.gene28312:intron | 50.0% |
| ! | GGATCGATGGTTGTTGTTGC+AGG | - | chr4.4:38979747-38979766 | MS.gene28312:intron | 50.0% |
| ! | GTAACGGTGAAGGAGAGCAT+CGG | - | chr4.4:38980591-38980610 | MS.gene28312:intron | 50.0% |
| ! | GTCGGGTGGCGCATTTTTAT+AGG | + | chr4.4:38977233-38977252 | None:intergenic | 50.0% |
| ! | GTTGAGCTCTAGCAGCATCT+AGG | + | chr4.4:38980137-38980156 | None:intergenic | 50.0% |
| ! | GTTTCTGTTGGTGGGATCGA+TGG | - | chr4.4:38979734-38979753 | MS.gene28312:intron | 50.0% |
| ! | TCCGGCTTACTGTAGGCTTT+TGG | - | chr4.4:38980292-38980311 | MS.gene28312:intron | 50.0% |
| ! | TGGTGGTGTTCAAAGGTGGA+TGG | + | chr4.4:38978319-38978338 | None:intergenic | 50.0% |
| !! | ACTGTAGGCTTTTGGGAGCT+TGG | - | chr4.4:38980300-38980319 | MS.gene28312:intron | 50.0% |
| !! | AGAGCATCGGTAAGGTTTCG+GGG | - | chr4.4:38980604-38980623 | MS.gene28312:intron | 50.0% |
| !! | ATGCACTGACTAGAGGAGGT+AGG | + | chr4.4:38978990-38979009 | None:intergenic | 50.0% |
| !! | GAGAGCATCGGTAAGGTTTC+GGG | - | chr4.4:38980603-38980622 | MS.gene28312:intron | 50.0% |
| !! | GGAGAGCATCGGTAAGGTTT+CGG | - | chr4.4:38980602-38980621 | MS.gene28312:intron | 50.0% |
| !! | TGGTTTGATGATGGTCGGAG+TGG | + | chr4.4:38978346-38978365 | None:intergenic | 50.0% |
| !!! | GCTTTTGGAGTGGTGATCGA+CGG | + | chr4.4:38978381-38978400 | None:intergenic | 50.0% |
| ACACGTTCCTTCACTGCACC+GGG | - | chr4.4:38978803-38978822 | MS.gene28312:intron | 55.0% | |
| ACCTCGCCTGGGATCAATAC+CGG | + | chr4.4:38980660-38980679 | None:intergenic | 55.0% | |
| AGGTGGATGGAGTGGTGATC+AGG | + | chr4.4:38978306-38978325 | None:intergenic | 55.0% | |
| AGGTTGCCATGATTGCTGCC+TGG | + | chr4.4:38979260-38979279 | None:intergenic | 55.0% | |
| ATCAATACCGGTATGCCGGG+AGG | + | chr4.4:38980648-38980667 | None:intergenic | 55.0% | |
| ATGGTCGGAGTGGTTGTTGG+TGG | + | chr4.4:38978336-38978355 | None:intergenic | 55.0% | |
| CAGTTAGATCAGCCCCTTGC+TGG | + | chr4.4:38979972-38979991 | None:intergenic | 55.0% | |
| CGGTACTACTTGTGGAGTCC+AGG | - | chr4.4:38979239-38979258 | MS.gene28312:intron | 55.0% | |
| GAAGCTCATGGCGCACATCT+AGG | - | chr4.4:38979916-38979935 | MS.gene28312:intron | 55.0% | |
| GACAAAACCCGGTGCAGTGA+AGG | + | chr4.4:38978813-38978832 | None:intergenic | 55.0% | |
| GAGTGGTGATCAGGAGTGGT+CGG | + | chr4.4:38978297-38978316 | None:intergenic | 55.0% | |
| GATGGAGTGGTGATCAGGAG+TGG | + | chr4.4:38978301-38978320 | None:intergenic | 55.0% | |
| GGGATCAATACCGGTATGCC+GGG | + | chr4.4:38980651-38980670 | None:intergenic | 55.0% | |
| GGTGCAGTGAAGGAACGTGT+AGG | + | chr4.4:38978803-38978822 | None:intergenic | 55.0% | |
| TAGATCAGCCCCTTGCTGGA+GGG | + | chr4.4:38979968-38979987 | None:intergenic | 55.0% | |
| TCAACGAAGAAGGAGCGGCA+AGG | + | chr4.4:38979071-38979090 | None:intergenic | 55.0% | |
| TCAATACCGGTATGCCGGGA+GGG | + | chr4.4:38980647-38980666 | None:intergenic | 55.0% | |
| TCACCAGAGCTTCAGCAGAG+TGG | - | chr4.4:38978964-38978983 | MS.gene28312:intron | 55.0% | |
| TGGAGTCCAGGCAGCAATCA+TGG | - | chr4.4:38979251-38979270 | MS.gene28312:intron | 55.0% | |
| TTAGATCAGCCCCTTGCTGG+AGG | + | chr4.4:38979969-38979988 | None:intergenic | 55.0% | |
| ! | GGTTGTTGGCAGACGGCTTT+TGG | + | chr4.4:38978396-38978415 | None:intergenic | 55.0% |
| ! | TTTGGAGTGGTGATCGACGG+TGG | + | chr4.4:38978378-38978397 | None:intergenic | 55.0% |
| !! | GAGCATCGGTAAGGTTTCGG+GGG | - | chr4.4:38980605-38980624 | MS.gene28312:intron | 55.0% |
| !! | GGCATACCGGTATTGATCCC+AGG | - | chr4.4:38980651-38980670 | MS.gene28312:intron | 55.0% |
| !! | GGTGAAGGAGAGCATCGGTA+AGG | - | chr4.4:38980596-38980615 | MS.gene28312:intron | 55.0% |
| !! | GTCGGAGTGGTGGATGTAGT+CGG | + | chr4.4:38978279-38978298 | None:intergenic | 55.0% |
| !! | TCACTGCACCGGGTTTTGTC+AGG | - | chr4.4:38978813-38978832 | MS.gene28312:intron | 55.0% |
| !! | TCTCAAGCACTGAGACGCCA+GGG | + | chr4.4:38980236-38980255 | None:intergenic | 55.0% |
| !! | TTCTCAAGCACTGAGACGCC+AGG | + | chr4.4:38980237-38980256 | None:intergenic | 55.0% |
| !! | TTGGCAGACGGCTTTTGGAG+TGG | + | chr4.4:38978391-38978410 | None:intergenic | 55.0% |
| AGGCCACTCTGCTGAAGCTC+TGG | + | chr4.4:38978970-38978989 | None:intergenic | 60.0% | |
| AGGGCTGAGCTAGGCAGTTC+AGG | + | chr4.4:38979949-38979968 | None:intergenic | 60.0% | |
| ATCAGGAGTGGTCGGAGTGG+TGG | + | chr4.4:38978289-38978308 | None:intergenic | 60.0% | |
| ATCGACGGTGGCCAGAGTAG+TGG | + | chr4.4:38978366-38978385 | None:intergenic | 60.0% | |
| CTAGCTCAGCCCTCCAGCAA+GGG | - | chr4.4:38979956-38979975 | MS.gene28312:intron | 60.0% | |
| GCAAGGCCTCTGTTGTGTCC+AGG | + | chr4.4:38979054-38979073 | None:intergenic | 60.0% | |
| GTGATCAGGAGTGGTCGGAG+TGG | + | chr4.4:38978292-38978311 | None:intergenic | 60.0% | |
| TAGCTCAGCCCTCCAGCAAG+GGG | - | chr4.4:38979957-38979976 | MS.gene28312:intron | 60.0% | |
| TCCATACCCTCCCGGCATAC+CGG | - | chr4.4:38980638-38980657 | MS.gene28312:intron | 60.0% | |
| TGGGCCCTTGGGGACAAAAG+AGG | + | chr4.4:38979155-38979174 | None:intergenic | 60.0% | |
| !! | ACCGGTATTGATCCCAGGCG+AGG | - | chr4.4:38980656-38980675 | MS.gene28312:intron | 60.0% |
| ACCGGTATGCCGGGAGGGTA+TGG | + | chr4.4:38980642-38980661 | None:intergenic | 65.0% | |
| AGTGAAGGGGGGCCACTGAG+AGG | + | chr4.4:38977676-38977695 | None:intergenic | 65.0% | |
| CCTAGCTCAGCCCTCCAGCA+AGG | - | chr4.4:38979955-38979974 | MS.gene28312:intron | 65.0% | |
| CCTTGCTGGAGGGCTGAGCT+AGG | + | chr4.4:38979958-38979977 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 38976482 | 38980788 | 38976482 | ID=MS.gene28312 |
| chr4.4 | mRNA | 38976482 | 38980788 | 38976482 | ID=MS.gene28312.t1;Parent=MS.gene28312 |
| chr4.4 | exon | 38980714 | 38980788 | 38980714 | ID=MS.gene28312.t1.exon1;Parent=MS.gene28312.t1 |
| chr4.4 | CDS | 38980714 | 38980788 | 38980714 | ID=cds.MS.gene28312.t1;Parent=MS.gene28312.t1 |
| chr4.4 | exon | 38977845 | 38978402 | 38977845 | ID=MS.gene28312.t1.exon2;Parent=MS.gene28312.t1 |
| chr4.4 | CDS | 38977845 | 38978402 | 38977845 | ID=cds.MS.gene28312.t1;Parent=MS.gene28312.t1 |
| chr4.4 | exon | 38976482 | 38977501 | 38976482 | ID=MS.gene28312.t1.exon3;Parent=MS.gene28312.t1 |
| chr4.4 | CDS | 38976482 | 38977501 | 38976482 | ID=cds.MS.gene28312.t1;Parent=MS.gene28312.t1 |
| Gene Sequence |
| Protein sequence |
