AlfalfaGEDB | MS.gene29209

M. sativa cultivar XinJiangDaYe / MS.gene29209

KEGG: K15498
GO: GO:0003674 GO:0003824 GO:0016787
PFAM: PF00149.31

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29209.t1	KZM97884.1	86.5	148	14	2	1	146	28	171	1.10E-67	266.2

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29209.t1	Q9LHE7	83.4	157	11	3	1	146	28	180	8.9e-69	261.2

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29209.t1	A0A165X6P1	86.5	148	14	2	1	146	28	171	8.2e-68	266.2

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050084	MS.gene29209	0.818786	1.63E-52	-1.69E-46
MS.gene050085	MS.gene29209	0.84362	1.25E-58	-1.69E-46
MS.gene050317	MS.gene29209	0.809487	1.85E-50	-1.69E-46
MS.gene050359	MS.gene29209	0.836836	7.41E-57	-1.69E-46
MS.gene050361	MS.gene29209	0.80857	2.90E-50	-1.69E-46
MS.gene050384	MS.gene29209	0.819071	1.41E-52	-1.69E-46
MS.gene050386	MS.gene29209	0.824083	9.78E-54	-1.69E-46
MS.gene050646	MS.gene29209	0.807482	4.95E-50	-1.69E-46
MS.gene050654	MS.gene29209	0.842776	2.10E-58	-1.69E-46
MS.gene050689	MS.gene29209	0.810763	9.80E-51	-1.69E-46
MS.gene050838	MS.gene29209	0.805253	1.46E-49	-1.69E-46
MS.gene050941	MS.gene29209	0.812959	3.26E-51	-1.69E-46
MS.gene051003	MS.gene29209	0.805949	1.04E-49	-1.69E-46
MS.gene051102	MS.gene29209	0.812595	3.92E-51	-1.69E-46
MS.gene051343	MS.gene29209	0.823788	1.15E-53	-1.69E-46
MS.gene051381	MS.gene29209	0.831414	1.69E-55	-1.69E-46
MS.gene051856	MS.gene29209	0.80585	1.09E-49	-1.69E-46
MS.gene052242	MS.gene29209	-0.807655	4.55E-50	-1.69E-46
MS.gene052307	MS.gene29209	0.802552	5.31E-49	-1.69E-46
MS.gene052342	MS.gene29209	0.807391	5.17E-50	-1.69E-46
MS.gene052434	MS.gene29209	0.806533	7.85E-50	-1.69E-46
MS.gene052609	MS.gene29209	0.819634	1.05E-52	-1.69E-46
MS.gene052932	MS.gene29209	0.804476	2.12E-49	-1.69E-46
MS.gene053058	MS.gene29209	0.823372	1.44E-53	-1.69E-46
MS.gene053079	MS.gene29209	0.807024	6.18E-50	-1.69E-46
MS.gene053167	MS.gene29209	0.820962	5.20E-53	-1.69E-46
MS.gene054823	MS.gene29209	0.817352	3.45E-52	-1.69E-46
MS.gene055311	MS.gene29209	0.801307	9.58E-49	-1.69E-46
MS.gene055513	MS.gene29209	0.815457	9.15E-52	-1.69E-46
MS.gene055864	MS.gene29209	0.811174	7.99E-51	-1.69E-46
MS.gene056097	MS.gene29209	0.817784	2.76E-52	-1.69E-46
MS.gene056181	MS.gene29209	0.841743	3.95E-58	-1.69E-46
MS.gene056787	MS.gene29209	0.848491	5.93E-60	-1.69E-46
MS.gene058054	MS.gene29209	0.826802	2.22E-54	-1.69E-46
MS.gene058055	MS.gene29209	0.802035	6.79E-49	-1.69E-46
MS.gene058292	MS.gene29209	0.820879	5.43E-53	-1.69E-46
MS.gene058638	MS.gene29209	0.809587	1.76E-50	-1.69E-46
MS.gene058639	MS.gene29209	0.810906	9.13E-51	-1.69E-46
MS.gene058646	MS.gene29209	0.820663	6.09E-53	-1.69E-46
MS.gene058654	MS.gene29209	0.809637	1.71E-50	-1.69E-46
MS.gene058758	MS.gene29209	0.8488	4.87E-60	-1.69E-46
MS.gene059007	MS.gene29209	0.840565	8.05E-58	-1.69E-46
MS.gene059360	MS.gene29209	0.802367	5.80E-49	-1.69E-46
MS.gene060296	MS.gene29209	0.80884	2.54E-50	-1.69E-46
MS.gene060400	MS.gene29209	0.80586	1.09E-49	-1.69E-46
MS.gene061006	MS.gene29209	0.803552	3.30E-49	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29209.t1	MTR_1g039380	82.911	158	12	3	1	147	4	157	1.70e-87	258
MS.gene29209.t1	MTR_1g039380	82.911	158	12	3	1	147	28	181	5.55e-87	258
MS.gene29209.t1	MTR_5g093990	59.184	147	47	2	3	140	31	173	2.40e-57	182
MS.gene29209.t1	MTR_7g107310	56.081	148	52	2	1	139	39	182	1.92e-55	177
MS.gene29209.t1	MTR_8g085610	56.757	148	51	2	1	139	10	153	7.57e-55	175
MS.gene29209.t1	MTR_8g085610	56.757	148	51	2	1	139	34	177	8.68e-55	176
MS.gene29209.t1	MTR_5g037200	54.730	148	54	2	1	139	32	175	4.87e-54	171
MS.gene29209.t1	MTR_8g062430	55.405	148	53	2	1	139	32	175	8.14e-53	171
MS.gene29209.t1	MTR_5g037200	54.730	148	54	2	1	139	32	175	1.87e-52	170
MS.gene29209.t1	MTR_1g079950	43.624	149	70	3	1	140	38	181	1.28e-39	137
MS.gene29209.t1	MTR_1g079950	43.624	149	70	3	1	140	38	181	1.43e-39	137
MS.gene29209.t1	MTR_1g079950	43.624	149	70	3	1	140	38	181	1.52e-39	137
MS.gene29209.t1	MTR_1g079950	43.624	149	70	3	1	140	67	210	1.88e-39	137
MS.gene29209.t1	MTR_8g098980	42.282	149	72	3	1	140	39	182	1.26e-38	134
MS.gene29209.t1	MTR_5g081230	42.568	148	71	3	2	140	56	198	3.21e-38	133
MS.gene29209.t1	MTR_1g074880	42.568	148	71	3	2	140	39	181	5.94e-38	133
MS.gene29209.t1	MTR_1g074880	42.000	150	73	3	2	142	39	183	6.54e-38	132
MS.gene29209.t1	MTR_1g043240	41.892	148	72	3	2	140	39	181	2.35e-37	131
MS.gene29209.t1	MTR_7g112870	41.611	149	73	3	1	140	40	183	5.80e-37	130
MS.gene29209.t1	MTR_7g116380	41.892	148	72	3	2	140	39	181	2.08e-36	129
MS.gene29209.t1	MTR_7g116380	41.892	148	72	3	2	140	39	181	2.12e-36	129
MS.gene29209.t1	MTR_8g005010	39.073	151	78	3	1	142	36	181	4.71e-36	127
MS.gene29209.t1	MTR_1g074880	45.312	128	56	3	22	140	4	126	2.65e-32	117
MS.gene29209.t1	MTR_1g074880	45.312	128	56	3	22	140	4	126	3.20e-32	117
MS.gene29209.t1	MTR_1g079950	43.624	149	66	4	1	140	16	155	3.63e-32	117
MS.gene29209.t1	MTR_1g089370	35.220	159	81	3	2	142	561	715	5.77e-27	107
MS.gene29209.t1	MTR_2g087530	33.962	159	83	3	2	142	564	718	9.55e-26	103
MS.gene29209.t1	MTR_2g087530	33.962	159	83	3	2	142	677	831	9.72e-26	103
MS.gene29209.t1	MTR_4g050540	33.333	159	84	3	2	142	682	836	1.12e-24	100
MS.gene29209.t1	MTR_8g072600	35.882	170	84	4	1	149	105	270	2.00e-23	95.1
MS.gene29209.t1	MTR_8g072600	35.882	170	84	4	1	149	105	270	9.01e-23	94.4
MS.gene29209.t1	MTR_3g452710	35.616	146	72	4	13	141	283	423	5.97e-18	80.9
MS.gene29209.t1	MTR_3g452710	36.429	140	67	4	19	141	222	356	4.46e-17	78.2
MS.gene29209.t1	MTR_2g100130	36.290	124	64	3	18	131	238	356	8.26e-17	77.4
MS.gene29209.t1	MTR_2g100130	36.290	124	64	3	18	131	248	366	9.00e-17	77.4
MS.gene29209.t1	MTR_2g100130	36.290	124	64	3	18	131	248	366	9.22e-17	77.4
MS.gene29209.t1	MTR_2g100160	36.301	146	71	4	13	141	153	293	9.80e-17	77.0
MS.gene29209.t1	MTR_2g100130	36.290	124	64	3	18	131	248	366	1.02e-16	77.4
MS.gene29209.t1	MTR_2g100130	36.290	124	64	3	18	131	248	366	1.07e-16	77.4
MS.gene29209.t1	MTR_2g100130	35.659	129	68	3	13	131	134	257	1.14e-16	77.0
MS.gene29209.t1	MTR_2g100130	35.659	129	68	3	13	131	204	327	1.38e-16	77.0
MS.gene29209.t1	MTR_2g100130	35.659	129	68	3	13	131	204	327	1.43e-16	77.0
MS.gene29209.t1	MTR_2g099710	38.462	117	51	4	4	103	221	333	1.39e-12	65.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29209.t1	AT3G19980	82.911	158	12	3	1	147	28	181	3.45e-87	258
MS.gene29209.t1	AT1G50370	82.278	158	13	3	1	147	28	181	1.73e-86	256
MS.gene29209.t1	AT4G26720	59.864	147	46	2	3	140	31	173	4.84e-60	189
MS.gene29209.t1	AT5G55260	59.184	147	47	2	3	140	31	173	9.54e-59	186
MS.gene29209.t1	AT2G42500	57.432	148	50	2	1	139	39	182	2.08e-56	180
MS.gene29209.t1	AT3G58500	57.432	148	50	2	1	139	39	182	4.10e-56	179
MS.gene29209.t1	AT1G59830	56.081	148	52	2	1	139	32	175	2.36e-53	171
MS.gene29209.t1	AT1G59830	56.081	148	52	2	1	139	32	175	4.65e-53	171
MS.gene29209.t1	AT1G10430	55.405	148	53	2	1	139	32	175	1.08e-52	170
MS.gene29209.t1	AT1G10430	55.405	148	53	2	1	139	32	175	1.08e-52	170
MS.gene29209.t1	AT1G69960	55.405	148	53	2	1	139	33	176	3.20e-52	169
MS.gene29209.t1	AT5G55260	46.277	188	47	3	3	140	31	214	1.93e-50	166
MS.gene29209.t1	AT2G42500	54.483	145	48	4	1	133	39	177	9.88e-46	149
MS.gene29209.t1	AT2G42500	53.957	139	48	3	1	127	39	173	3.04e-45	147
MS.gene29209.t1	AT2G42500	56.489	131	41	3	1	119	39	165	5.26e-45	146
MS.gene29209.t1	AT2G29400	43.243	148	70	3	2	140	56	198	5.95e-40	138
MS.gene29209.t1	AT4G11240	44.218	147	68	3	2	139	40	181	9.15e-39	135
MS.gene29209.t1	AT5G59160	42.568	148	71	3	2	140	49	191	1.18e-38	134
MS.gene29209.t1	AT5G59160	42.568	148	71	3	2	140	49	191	1.18e-38	134
MS.gene29209.t1	AT5G59160	42.568	148	71	3	2	140	49	191	1.18e-38	134
MS.gene29209.t1	AT2G39840	42.282	149	72	3	1	140	52	195	1.31e-38	134
MS.gene29209.t1	AT5G27840	42.953	149	71	3	1	140	44	187	1.36e-38	134
MS.gene29209.t1	AT5G27840	42.953	149	71	3	1	140	44	187	1.37e-38	134
MS.gene29209.t1	AT5G27840	42.953	149	71	3	1	140	44	187	1.40e-38	134
MS.gene29209.t1	AT5G27840	42.953	149	71	3	1	140	44	187	1.40e-38	134
MS.gene29209.t1	AT3G05580	42.282	149	72	3	1	140	44	187	1.69e-38	132
MS.gene29209.t1	AT3G05580	42.282	149	72	3	1	140	44	187	4.62e-38	133
MS.gene29209.t1	AT3G46820	42.568	148	71	3	2	140	49	191	1.52e-37	131
MS.gene29209.t1	AT5G43380	41.216	148	73	3	2	140	39	181	2.58e-36	129
MS.gene29209.t1	AT5G43380	41.216	148	73	3	2	140	39	181	2.61e-36	129
MS.gene29209.t1	AT5G43380	41.216	148	73	3	2	140	39	181	2.83e-36	129
MS.gene29209.t1	AT1G64040	40.268	149	75	3	1	140	39	182	7.30e-36	127
MS.gene29209.t1	AT2G42500	55.556	99	40	1	41	139	41	135	2.56e-34	122
MS.gene29209.t1	AT1G03445	40.268	149	67	3	1	131	488	632	8.68e-30	115
MS.gene29209.t1	AT1G03445	40.268	149	67	3	1	131	488	632	8.70e-30	115
MS.gene29209.t1	AT4G03080	35.849	159	80	3	2	142	563	717	3.44e-28	110
MS.gene29209.t1	AT2G27210	32.704	159	85	3	2	142	683	837	6.56e-24	98.2
MS.gene29209.t1	AT2G27210	32.704	159	85	3	2	142	688	842	6.56e-24	98.2
MS.gene29209.t1	AT1G08420	32.075	159	86	3	2	142	694	848	4.97e-23	95.9
MS.gene29209.t1	AT1G08420	32.075	159	86	3	2	142	699	853	4.97e-23	95.9
MS.gene29209.t1	AT5G63870	40.476	126	59	3	18	131	79	200	5.70e-20	85.1
MS.gene29209.t1	AT2G42810	36.301	146	71	4	13	141	218	358	1.27e-19	85.5
MS.gene29209.t1	AT2G42810	36.301	146	71	4	13	141	218	358	1.27e-19	85.5
MS.gene29209.t1	AT2G42810	36.301	146	71	4	13	141	218	358	1.27e-19	85.5
MS.gene29209.t1	AT5G63870	40.476	126	59	3	18	131	79	200	1.35e-19	85.1
MS.gene29209.t1	AT5G63870	40.476	126	59	3	18	131	79	200	1.35e-19	85.1
MS.gene29209.t1	AT2G42810	36.301	146	71	4	13	141	271	411	1.43e-19	85.5
MS.gene29209.t1	AT2G42810	36.301	146	71	4	13	141	272	412	1.55e-19	85.5
MS.gene29209.t1	AT5G10900	35.616	146	73	4	3	131	205	346	1.86e-18	82.4
MS.gene29209.t1	AT5G10900	35.616	146	73	4	3	131	205	346	1.87e-18	82.4
MS.gene29209.t1	AT5G10900	35.616	146	73	4	3	131	205	346	1.88e-18	82.4
MS.gene29209.t1	AT1G48120	35.849	159	82	5	3	145	637	791	3.54e-18	81.6

Find 25 sgRNAs with CRISPR-Local

Find 145 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GTGTGAGTTGTCTACTTTCA+TGG	0.258782	1.1:+23997114	None:intergenic
CTTTCATGGTTCCACGTAGA+AGG	0.305004	1.1:+23997128	None:intergenic
GATGAATGCCAGAGAAAGTA+TGG	0.349004	1.1:-23996383	MS.gene29209:CDS
ATGTCACCACAAACAGTTAC+TGG	0.360532	1.1:+23997867	None:intergenic
ACCCAGGTGCTTTGTGTTCA+CGG	0.361024	1.1:-23996155	MS.gene29209:intron
TAGCATTTCCATACTTTCTC+TGG	0.362451	1.1:+23996375	None:intergenic
CGTAGAAGGGTTATATTAGC+TGG	0.378323	1.1:+23997142	None:intergenic
ACACTCTCTGCAATTATAGA+TGG	0.378687	1.1:-23996314	MS.gene29209:CDS
TGGTCAATTGTTCTGATGTC+TGG	0.394556	1.1:+23996122	None:intergenic
GACGGAGGGAGTATCAATTA+AGG	0.416023	1.1:-23995718	MS.gene29209:intron
GGTTAAAGAGATCTTAATTG+AGG	0.467806	1.1:-23997916	MS.gene29209:CDS
ACTGTTTGTGGTGACATTCA+TGG	0.492582	1.1:-23997861	MS.gene29209:CDS
GTCCTCGGGCACGTGCCCAC+CGG	0.508636	1.1:+23997806	None:intergenic
AATAGTCCAGTAACTGTTTG+TGG	0.542664	1.1:-23997873	MS.gene29209:CDS
TTGTTCTGATGTCTGGAGAA+AGG	0.553674	1.1:+23996129	None:intergenic
TTTCATGGTTCCACGTAGAA+GGG	0.556214	1.1:+23997129	None:intergenic
ACAGTTACTGGACTATTCAC+AGG	0.560124	1.1:+23997879	None:intergenic
AGTATGGAAATGCTAATGCT+TGG	0.570861	1.1:-23996367	MS.gene29209:CDS
GTAGAAGGGTTATATTAGCT+GGG	0.598366	1.1:+23997143	None:intergenic
TAGGGTGACTTTGTTGATCG+CGG	0.614888	1.1:-23997668	MS.gene29209:CDS
AGACATCAGAACAATTGACC+AGG	0.675885	1.1:-23996120	MS.gene29209:intron
TGTAAGATAGTCGAAAACAT+CGG	0.689517	1.1:+23996334	None:intergenic
TGAAAGTAGACAACTCACAC+AGG	0.696061	1.1:-23997111	MS.gene29209:CDS
GCTAATATAACCCTTCTACG+TGG	0.729724	1.1:-23997139	MS.gene29209:CDS
CAGGTGCTTTGTGTTCACGG+TGG	0.738287	1.1:-23996152	MS.gene29209:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AAAAAAATTGTATAAATACA+AGG	+	chr1.1:23997652-23997671	None:intergenic	10.0%
!!	AAAAAATTGTATAAATACAA+GGG	+	chr1.1:23997651-23997670	None:intergenic	10.0%
!!	TAAAAAGATACTTAAATAAA+AGG	+	chr1.1:23996242-23996261	None:intergenic	10.0%
!!!	ATATGTATCTTTTTAATAAA+AGG	-	chr1.1:23996876-23996895	MS.gene29209:intron	10.0%
!!!	TTGATTTGTTAAAATAAATT+AGG	-	chr1.1:23996618-23996637	MS.gene29209:intron	10.0%
!!	AATTAGAGTTATATTGTATT+GGG	+	chr1.1:23997587-23997606	None:intergenic	15.0%
!!	ATCCTAAATAAAAAGAATTT+AGG	-	chr1.1:23997856-23997875	MS.gene29209:CDS	15.0%
!!	TAATTAGAGTTATATTGTAT+TGG	+	chr1.1:23997588-23997607	None:intergenic	15.0%
!!	TTAAAAAAGTAAGTTTACAT+TGG	-	chr1.1:23996832-23996851	MS.gene29209:intron	15.0%
!!	ATAAAAATGTAATTAGTCCT+CGG	+	chr1.1:23995640-23995659	None:intergenic	20.0%
!!	ATTCCTAAAATTATTATCTG+TGG	+	chr1.1:23995972-23995991	None:intergenic	20.0%
!!	CAAATGGAATATATTGTATT+GGG	+	chr1.1:23997628-23997647	None:intergenic	20.0%
!!	GTAAGAAATGTCTAAATTTA+TGG	-	chr1.1:23996724-23996743	MS.gene29209:intron	20.0%
!!	TAACTGCAATATAAACTAAT+AGG	-	chr1.1:23996593-23996612	MS.gene29209:intron	20.0%
!!	TATGTTATGTTATGTATTGT+TGG	-	chr1.1:23995675-23995694	MS.gene29209:CDS	20.0%
!!	TGATTTAGAAATTAATGAGT+TGG	-	chr1.1:23995991-23996010	MS.gene29209:intron	20.0%
!!	TTTAATTGTGTATATCTTAG+AGG	+	chr1.1:23997810-23997829	None:intergenic	20.0%
!!!	ATTGAATAACTCAGTTATTT+TGG	+	chr1.1:23997542-23997561	None:intergenic	20.0%
!!!	GACACTTTTTTTTAGAAAAT+GGG	+	chr1.1:23997519-23997538	None:intergenic	20.0%
!!!	TGCCTAAATTCTTTTTATTT+AGG	+	chr1.1:23997861-23997880	None:intergenic	20.0%
!!!	TTCTATCATAAACCATATTT+TGG	+	chr1.1:23996018-23996037	None:intergenic	20.0%
!!!	TTGAATAACTCAGTTATTTT+GGG	+	chr1.1:23997541-23997560	None:intergenic	20.0%
!!!	TTTTTAAACTTCTTAACATG+TGG	+	chr1.1:23996819-23996838	None:intergenic	20.0%
!	ACTTATGTAACCAATAGTAT+CGG	-	chr1.1:23996117-23996136	MS.gene29209:intron	25.0%
!	AGAACATGGGAAATTATTAA+AGG	-	chr1.1:23996409-23996428	MS.gene29209:intron	25.0%
!	ATTTCTAATGGCATTTCAAA+AGG	+	chr1.1:23996953-23996972	None:intergenic	25.0%
!	CATGTTAAAAGAACTAAAAG+TGG	+	chr1.1:23996905-23996924	None:intergenic	25.0%
!	CTGCTTAAAATGTTAACTTA+AGG	+	chr1.1:23996391-23996410	None:intergenic	25.0%
!	GCAAATGGAATATATTGTAT+TGG	+	chr1.1:23997629-23997648	None:intergenic	25.0%
!	TAAAAATGTAATTAGTCCTC+GGG	+	chr1.1:23995639-23995658	None:intergenic	25.0%
!	TACACGAAATTAACATCAAT+TGG	+	chr1.1:23996994-23997013	None:intergenic	25.0%
!	TGGTTTATGATAGAACATTA+TGG	-	chr1.1:23996023-23996042	MS.gene29209:intron	25.0%
!	TTCTCATCTCTAATTTCTAA+TGG	+	chr1.1:23996965-23996984	None:intergenic	25.0%
!	TTTCTAATGGCATTTCAAAA+GGG	+	chr1.1:23996952-23996971	None:intergenic	25.0%
!!	ACACCACAGATAATAATTTT+AGG	-	chr1.1:23995966-23995985	MS.gene29209:intron	25.0%
!!	ATAATTGATTCAGTGATGTA+AGG	-	chr1.1:23996655-23996674	MS.gene29209:intron	25.0%
!!	CGTGTAATTTAATATTTTGC+AGG	-	chr1.1:23997008-23997027	MS.gene29209:intron	25.0%
!!	GAGGACTAATTACATTTTTA+TGG	-	chr1.1:23995639-23995658	MS.gene29209:intron	25.0%
!!	TAACATTTTAAGCAGAACAT+GGG	-	chr1.1:23996396-23996415	MS.gene29209:CDS	25.0%
!!	TTAACATTTTAAGCAGAACA+TGG	-	chr1.1:23996395-23996414	MS.gene29209:CDS	25.0%
!!	TTTAATATTTTGCAGGTCTA+TGG	-	chr1.1:23997015-23997034	MS.gene29209:intron	25.0%
!!!	CTAATGATGTTTTGTTTTTG+GGG	-	chr1.1:23996520-23996539	MS.gene29209:intron	25.0%
!!!	GCTAATGATGTTTTGTTTTT+GGG	-	chr1.1:23996519-23996538	MS.gene29209:intron	25.0%
!!!	GGACACTTTTTTTTAGAAAA+TGG	+	chr1.1:23997520-23997539	None:intergenic	25.0%
!!!	GGCGATATAATTTTAATCAT+AGG	+	chr1.1:23997789-23997808	None:intergenic	25.0%
!!!	TAATGATGTTTTGTTTTTGG+GGG	-	chr1.1:23996521-23996540	MS.gene29209:intron	25.0%
!!!	TGTTGCTTAATGTGTTTTTA+GGG	-	chr1.1:23995742-23995761	MS.gene29209:intron	25.0%
	AGGTATGTGTTTAATGTACT+TGG	-	chr1.1:23996337-23996356	MS.gene29209:CDS	30.0%
	ATACTATGATCGTCAAGATA+AGG	-	chr1.1:23997391-23997410	MS.gene29209:intron	30.0%
	ATGTTATGTATTGTTGGATC+TGG	-	chr1.1:23995681-23995700	MS.gene29209:CDS	30.0%
	TCTAATTTATTCGTCGTGTT+TGG	-	chr1.1:23995913-23995932	MS.gene29209:intron	30.0%
	TGTAAGATAGTCGAAAACAT+CGG	+	chr1.1:23997097-23997116	None:intergenic	30.0%
	TGTATAAATACAAGGGCAAA+TGG	+	chr1.1:23997644-23997663	None:intergenic	30.0%
	TGTGACTTTGAGTAATATTG+TGG	-	chr1.1:23995870-23995889	MS.gene29209:intron	30.0%
	TGTTATGTATTGTTGGATCT+GGG	-	chr1.1:23995682-23995701	MS.gene29209:CDS	30.0%
	TTGTGTATTGCAAAAAGTAG+CGG	-	chr1.1:23996470-23996489	MS.gene29209:intron	30.0%
!	ATGGTTTTCATGAGTTAAGA+TGG	+	chr1.1:23997430-23997449	None:intergenic	30.0%
!	TAATGAGTTGGACCAAAATA+TGG	-	chr1.1:23996003-23996022	MS.gene29209:intron	30.0%
!	TCAAACTGACTCAGATAAAA+CGG	-	chr1.1:23997687-23997706	MS.gene29209:intron	30.0%
!!!	CTAATGAAACTTTTTCAGAC+CGG	-	chr1.1:23995603-23995622	MS.gene29209:intron	30.0%
!!!	GGCTAATGATGTTTTGTTTT+TGG	-	chr1.1:23996518-23996537	MS.gene29209:intron	30.0%
!!!	GTGTTGCTTAATGTGTTTTT+AGG	-	chr1.1:23995741-23995760	MS.gene29209:intron	30.0%
	AACATGTGCAATGTTGCATA+TGG	-	chr1.1:23996919-23996938	MS.gene29209:intron	35.0%
	AATAGTCCAGTAACTGTTTG+TGG	-	chr1.1:23995555-23995574	MS.gene29209:intron	35.0%
	ACACTCTCTGCAATTATAGA+TGG	-	chr1.1:23997114-23997133	MS.gene29209:CDS	35.0%
	AGAAAATGGGTCAGATATTC+CGG	+	chr1.1:23997506-23997525	None:intergenic	35.0%
	AGAAAGTCACAAACTACAAG+TGG	+	chr1.1:23995896-23995915	None:intergenic	35.0%
	AGTATGGAAATGCTAATGCT+TGG	-	chr1.1:23997061-23997080	MS.gene29209:intron	35.0%
	CGTAACTCTCTTATATGCTA+TGG	-	chr1.1:23997247-23997266	MS.gene29209:intron	35.0%
	CTTGTCACTCACTATAACTA+TGG	+	chr1.1:23997449-23997468	None:intergenic	35.0%
	GCAATACACAATTGACAATG+TGG	+	chr1.1:23996461-23996480	None:intergenic	35.0%
	GTAGAAGGGTTATATTAGCT+GGG	+	chr1.1:23996288-23996307	None:intergenic	35.0%
	TAGCATTTCCATACTTTCTC+TGG	+	chr1.1:23997056-23997075	None:intergenic	35.0%
!	AAGCCTTTTAACACTAAGTG+GGG	+	chr1.1:23996072-23996091	None:intergenic	35.0%
!	ACAAGCCTTTTAACACTAAG+TGG	+	chr1.1:23996074-23996093	None:intergenic	35.0%
!	CAAACTGACTCAGATAAAAC+GGG	-	chr1.1:23997688-23997707	MS.gene29209:intron	35.0%
!	CAAGCCTTTTAACACTAAGT+GGG	+	chr1.1:23996073-23996092	None:intergenic	35.0%
!!	ACCTAGCTTTTAGAAGCAAA+AGG	+	chr1.1:23995813-23995832	None:intergenic	35.0%
!!	AGCTTTTAGAAGCAAAAGGA+TGG	+	chr1.1:23995809-23995828	None:intergenic	35.0%
!!	TCCTTTTGCTTCTAAAAGCT+AGG	-	chr1.1:23995809-23995828	MS.gene29209:intron	35.0%
	ACAGTTACTGGACTATTCAC+AGG	+	chr1.1:23995552-23995571	None:intergenic	40.0%
	ACTGTTTGTGGTGACATTCA+TGG	-	chr1.1:23995567-23995586	MS.gene29209:intron	40.0%
	AGACATCAGAACAATTGACC+AGG	-	chr1.1:23997308-23997327	MS.gene29209:intron	40.0%
	ATGTCACCACAAACAGTTAC+TGG	+	chr1.1:23995564-23995583	None:intergenic	40.0%
	CAACCCCACTTAGTGTTAAA+AGG	-	chr1.1:23996066-23996085	MS.gene29209:intron	40.0%
	CACTGCTTAAATGTGAGTAG+GGG	+	chr1.1:23997187-23997206	None:intergenic	40.0%
	CGTAGAAGGGTTATATTAGC+TGG	+	chr1.1:23996289-23996308	None:intergenic	40.0%
	GAAAATGGGTCAGATATTCC+GGG	+	chr1.1:23997505-23997524	None:intergenic	40.0%
	GATGAATGCCAGAGAAAGTA+TGG	-	chr1.1:23997045-23997064	MS.gene29209:intron	40.0%
	GCACTGCTTAAATGTGAGTA+GGG	+	chr1.1:23997188-23997207	None:intergenic	40.0%
	GCTAATATAACCCTTCTACG+TGG	-	chr1.1:23996289-23996308	MS.gene29209:intron	40.0%
	GTAGATTTCAACCAGCAACT+GGG	+	chr1.1:23997349-23997368	None:intergenic	40.0%
	GTATCTGACACCGATACTAT+TGG	+	chr1.1:23996130-23996149	None:intergenic	40.0%
	GTGAAGTGACAATGCTACAT+AGG	-	chr1.1:23996169-23996188	MS.gene29209:intron	40.0%
	GTGTGAGTTGTCTACTTTCA+TGG	+	chr1.1:23996317-23996336	None:intergenic	40.0%
	TGAAAGTAGACAACTCACAC+AGG	-	chr1.1:23996317-23996336	MS.gene29209:CDS	40.0%
	TGCACTGCTTAAATGTGAGT+AGG	+	chr1.1:23997189-23997208	None:intergenic	40.0%
	TGGTCAATTGTTCTGATGTC+TGG	+	chr1.1:23997309-23997328	None:intergenic	40.0%
	TGTAGATTTCAACCAGCAAC+TGG	+	chr1.1:23997350-23997369	None:intergenic	40.0%
	TTGTTCTGATGTCTGGAGAA+AGG	+	chr1.1:23997302-23997321	None:intergenic	40.0%
	TTTCATGGTTCCACGTAGAA+GGG	+	chr1.1:23996302-23996321	None:intergenic	40.0%
!	CTTTTAACACTAAGTGGGGT+TGG	+	chr1.1:23996068-23996087	None:intergenic	40.0%
!	GCATTGTCACTTCACAATGA+AGG	+	chr1.1:23996164-23996183	None:intergenic	40.0%
!	TAGCGGTTTGTTCAAATTCC+CGG	-	chr1.1:23996487-23996506	MS.gene29209:intron	40.0%
!	TCTATAGGCCTTTTGTGATC+AGG	-	chr1.1:23996548-23996567	MS.gene29209:intron	40.0%
!	TTTGCGTGTTGTTGTTGTTG+TGG	-	chr1.1:23996093-23996112	MS.gene29209:intron	40.0%
!	TTTTACTACTGCTCTTGCTG+TGG	-	chr1.1:23996702-23996721	MS.gene29209:intron	40.0%
!!	ATAGTATCGGTGTCAGATAC+TGG	-	chr1.1:23996130-23996149	MS.gene29209:CDS	40.0%
!!!	ATGAAACTTTTTCAGACCGG+TGG	-	chr1.1:23995606-23995625	MS.gene29209:intron	40.0%
!!!	TGAAACTTTTTCAGACCGGT+GGG	-	chr1.1:23995607-23995626	MS.gene29209:intron	40.0%
	ATAGAGAGAGGAAAGAGGGA+AGG	+	chr1.1:23997164-23997183	None:intergenic	45.0%
	ATGGCGTAATTTGATCCACG+TGG	-	chr1.1:23996042-23996061	MS.gene29209:intron	45.0%
	ATTTCAACCAGCAACTGGGA+AGG	+	chr1.1:23997345-23997364	None:intergenic	45.0%
	CCACAGAACCTGATCACAAA+AGG	+	chr1.1:23996559-23996578	None:intergenic	45.0%
	CTGACTCAGATAAAACGGGA+CGG	-	chr1.1:23997692-23997711	MS.gene29209:intron	45.0%
	CTTTCATGGTTCCACGTAGA+AGG	+	chr1.1:23996303-23996322	None:intergenic	45.0%
	TAGGGTGACTTTGTTGATCG+CGG	-	chr1.1:23995760-23995779	MS.gene29209:intron	45.0%
	TGTGATCAGGTTCTGTGGAA+GGG	-	chr1.1:23996561-23996580	MS.gene29209:intron	45.0%
	TTATATGCTATGGTCGACCC+AGG	-	chr1.1:23997257-23997276	MS.gene29209:intron	45.0%
	TTCAAATTCCCGGTCATAGC+AGG	-	chr1.1:23996497-23996516	MS.gene29209:intron	45.0%
	TTGTGATCAGGTTCTGTGGA+AGG	-	chr1.1:23996560-23996579	MS.gene29209:intron	45.0%
	TTTCAACCAGCAACTGGGAA+GGG	+	chr1.1:23997344-23997363	None:intergenic	45.0%
!	ATCATTAGCCTGCTATGACC+GGG	+	chr1.1:23996508-23996527	None:intergenic	45.0%
!	CATCATTAGCCTGCTATGAC+CGG	+	chr1.1:23996509-23996528	None:intergenic	45.0%
!	CCTTTTGTGATCAGGTTCTG+TGG	-	chr1.1:23996556-23996575	MS.gene29209:intron	45.0%
!!	GACGGAGGGAGTATCAATTA+AGG	-	chr1.1:23997710-23997729	MS.gene29209:intron	45.0%
!!	GTTTTTGGGGGCACATCTAT+AGG	-	chr1.1:23996533-23996552	MS.gene29209:intron	45.0%
	ACCCAGGTGCTTTGTGTTCA+CGG	-	chr1.1:23997273-23997292	MS.gene29209:intron	50.0%
	ACTCAGATAAAACGGGACGG+AGG	-	chr1.1:23997695-23997714	MS.gene29209:intron	50.0%
	AGGGGATAGAGAGAGGAAAG+AGG	+	chr1.1:23997169-23997188	None:intergenic	50.0%
	ATGGGTCAGATATTCCGGGA+CGG	+	chr1.1:23997501-23997520	None:intergenic	50.0%
	CTCAGATAAAACGGGACGGA+GGG	-	chr1.1:23997696-23997715	MS.gene29209:intron	50.0%
	GGGGATAGAGAGAGGAAAGA+GGG	+	chr1.1:23997168-23997187	None:intergenic	50.0%
	TGTGAGTAGGGGATAGAGAG+AGG	+	chr1.1:23997176-23997195	None:intergenic	50.0%
!	ACCGTGAACACAAAGCACCT+GGG	+	chr1.1:23997277-23997296	None:intergenic	50.0%
	CAGGTGCTTTGTGTTCACGG+TGG	-	chr1.1:23997276-23997295	MS.gene29209:intron	55.0%
	CATTACTACTCCCTCCGTCC+CGG	-	chr1.1:23997484-23997503	MS.gene29209:intron	55.0%
	GTCAGATATTCCGGGACGGA+GGG	+	chr1.1:23997497-23997516	None:intergenic	55.0%
!	CACCGTGAACACAAAGCACC+TGG	+	chr1.1:23997278-23997297	None:intergenic	55.0%
	CTAGCTCCCTTCCCAGTTGC+TGG	-	chr1.1:23997335-23997354	MS.gene29209:intron	60.0%
	GGGAAGGGAGCTAGAGAACC+TGG	+	chr1.1:23997329-23997348	None:intergenic	60.0%
	GGTCAGATATTCCGGGACGG+AGG	+	chr1.1:23997498-23997517	None:intergenic	60.0%
!!	ACTAAGTGGGGTTGGCCACG+TGG	+	chr1.1:23996060-23996079	None:intergenic	60.0%
	GTCCTCGGGCACGTGCCCAC+CGG	+	chr1.1:23995625-23995644	None:intergenic	75.0%
!	GACCGGTGGGCACGTGCCCG+AGG	-	chr1.1:23995620-23995639	MS.gene29209:intron	80.0%

Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	23995513	23997937	23995513	ID=MS.gene29209
chr1.1	mRNA	23995513	23997937	23995513	ID=MS.gene29209.t1;Parent=MS.gene29209
chr1.1	exon	23997818	23997937	23997818	ID=MS.gene29209.t1.exon1;Parent=MS.gene29209.t1
chr1.1	CDS	23997818	23997937	23997818	ID=cds.MS.gene29209.t1;Parent=MS.gene29209.t1
chr1.1	exon	23997620	23997687	23997620	ID=MS.gene29209.t1.exon2;Parent=MS.gene29209.t1
chr1.1	CDS	23997620	23997687	23997620	ID=cds.MS.gene29209.t1;Parent=MS.gene29209.t1
chr1.1	exon	23997099	23997168	23997099	ID=MS.gene29209.t1.exon3;Parent=MS.gene29209.t1
chr1.1	CDS	23997099	23997168	23997099	ID=cds.MS.gene29209.t1;Parent=MS.gene29209.t1
chr1.1	exon	23996310	23996420	23996310	ID=MS.gene29209.t1.exon4;Parent=MS.gene29209.t1
chr1.1	CDS	23996310	23996420	23996310	ID=cds.MS.gene29209.t1;Parent=MS.gene29209.t1
chr1.1	exon	23996121	23996171	23996121	ID=MS.gene29209.t1.exon5;Parent=MS.gene29209.t1
chr1.1	CDS	23996121	23996171	23996121	ID=cds.MS.gene29209.t1;Parent=MS.gene29209.t1
chr1.1	exon	23995666	23995729	23995666	ID=MS.gene29209.t1.exon6;Parent=MS.gene29209.t1
chr1.1	CDS	23995666	23995729	23995666	ID=cds.MS.gene29209.t1;Parent=MS.gene29209.t1
chr1.1	exon	23995513	23995572	23995513	ID=MS.gene29209.t1.exon7;Parent=MS.gene29209.t1
chr1.1	CDS	23995513	23995572	23995513	ID=cds.MS.gene29209.t1;Parent=MS.gene29209.t1

Gene Sequence

>MS.gene29209

GTTAAAGAGATCTTAATTGAGGAATCGAATGTGCAACCTGTGAATAGTCCAGTAACTGTTTGTGGTGACATTCATGGTCAGTTTCATGATCTAATGAAACTTTTTCAGACCGGTGGGCACGTGCCCGAGGACTAATTACATTTTTATGGTAATTTATTTTACTATGTTATGTTATGTATTGTTGGATCTGGGTGATGTTATTGTTATGTATATTTAGTGATTGTTTTTGTGTTGCTTAATGTGTTTTTAGGGTGACTTTGTTGATCGCGGTTATAATAGTCTCGAAGTATTCACCATCCTTTTGCTTCTAAAAGCTAGGTATGTTGCTTACATTTGTCTTAACTTAGCTTGTGTTCATGTGACTTTGAGTAATATTGTGGCCACTTGTAGTTTGTGACTTTCTAATTTATTCGTCGTGTTTGGCTATGAAGCACTGACACAGATACATATACAACACCACAGATAATAATTTTAGGAATGATTTAGAAATTAATGAGTTGGACCAAAATATGGTTTATGATAGAACATTATGGCGTAATTTGATCCACGTGGCCAACCCCACTTAGTGTTAAAAGGCTTGTTTGCGTGTTGTTGTTGTTGTGGAACTTATGTAACCAATAGTATCGGTGTCAGATACTGGACACGACACCTTCATTGTGAAGTGACAATGCTACATAGGTGTATAGATCTGAATGTTAAGAGTTATTGAGACTTTCTAATACTTTTCCTTTTATTTAAGTATCTTTTTATTTTTTGTTTGATTCTGTAGATACCCAGCTAATATAACCCTTCTACGTGGAACCATGAAAGTAGACAACTCACACAGGTATGTGTTTAATGTACTTGGCTATCATACATCATATGAATTACAGTAGCCTTAAGTTAACATTTTAAGCAGAACATGGGAAATTATTAAAGGTTTATGCTTTATGTCATTCTAGCAAGCCACATTGTCAATTGTGTATTGCAAAAAGTAGCGGTTTGTTCAAATTCCCGGTCATAGCAGGCTAATGATGTTTTGTTTTTGGGGGCACATCTATAGGCCTTTTGTGATCAGGTTCTGTGGAAGGGCTGAATTATTAACTGCAATATAAACTAATAGGTCTTGATTTGTTAAAATAAATTAGGAGTCTGTTGATTATATAATTGATTCAGTGATGTAAGGACTTGTGAATTATCATTCTTGCTTTTTTACTACTGCTCTTGCTGTGGTAAGAAATGTCTAAATTTATGGATTTCTATTACAAGATCTTACAGCTTAGATGATAGTTTTTGAAAGAATTTTTCTATCATGTGCAAATTTCCACATGTTAAGAAGTTTAAAAAAGTAAGTTTACATTGGAACTTGTGTATTTAATATTAAATATGTATCTTTTTAATAAAAGGTTTCCACTTTTAGTTCTTTTAACATGTGCAATGTTGCATATGGTAGAAAACCCTTTTGAAATGCCATTAGAAATTAGAGATGAGAAAAGTTGCCAATTGATGTTAATTTCGTGTAATTTAATATTTTGCAGGTCTATGGATTTTATGATGAATGCCAGAGAAAGTATGGAAATGCTAATGCTTGGCGATATTGTACCGATGTTTTCGACTATCTTACACTCTCTGCAATTATAGATGGAACTGTAATTCTCTTTCACTCTTTCCTTCCCTCTTTCCTCTCTCTATCCCCTACTCACATTTAAGCAGTGCATGCGCTTTTTATTTATTTTTATTTGTGCTTTAAGAAAACGTAACTCTCTTATATGCTATGGTCGACCCAGGTGCTTTGTGTTCACGGTGGCCTTTCTCCAGACATCAGAACAATTGACCAGGTTCTCTAGCTCCCTTCCCAGTTGCTGGTTGAAATCTACATTCTCTATGTATCTGTGTATTATACTATGATCGTCAAGATAAGGATTAAGTGATTAACCATCTTAACTCATGAAAACCATAGTTATAGTGAGTGACAAGTGACAACTTTTAAGACATTACTACTCCCTCCGTCCCGGAATATCTGACCCATTTTCTAAAAAAAAGTGTCCCAAAATAACTGAGTTATTCAATTTTCAATACAACTTTCATCATTCCCAATACAATATAACTCTAATTAATACTACTTTCATCATTCCCAATACAATATATTCCATTTGCCCTTGTATTTATACAATTTTTTTAATCTGTGTGAAAAATCAAACTGACTCAGATAAAACGGGACGGAGGGAGTATCAATTAAGGAACTGTCATAATAAATTTAGTTGTTCAAGAGTCAATGTTGATAAAAACTGCAGCCTATGATTAAAATTATATCGCCTCTAAGATATACACAATTAAAGTTTGAGCAATATTTGCTTGAACACAATCCTAAATAAAAAGAATTTAGGCACACACATCAAAATACAAATTATTTACTTGTTTAAAAAATACACATTATTTAATTTAT

Protein sequence

>MS.gene29209.t1

VKEILIEESNVQPVNSPVTVCGDIHGQFHDLMKLFQTGGHGDFVDRGYNSLEVFTILLLLKARYPANITLLRGTMKVDNSHRYVFNVYGFYDECQRKYGNANAWRYCTDVFDYLTLSAIIDGTVLCVHGGLSPDIRTIDQYQLRNCHNKFSCSRVNVDKNCSTHIKIQIIYLFKKYTLFNL