Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29969.t1 | XP_003630914.1 | 96.1 | 463 | 14 | 1 | 1 | 459 | 1 | 463 | 2.40E-210 | 741.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29969.t1 | Q9ZU93 | 59.2 | 468 | 168 | 4 | 1 | 456 | 1 | 457 | 2.1e-130 | 467.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29969.t1 | G7LAI2 | 96.1 | 463 | 14 | 1 | 1 | 459 | 1 | 463 | 1.7e-210 | 741.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene29969.t1 | TF | C2H2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049283 | MS.gene29969 | 0.811516 | 6.73E-51 | -1.69E-46 |
| MS.gene04998 | MS.gene29969 | 0.80338 | 3.58E-49 | -1.69E-46 |
| MS.gene051343 | MS.gene29969 | 0.814492 | 1.50E-51 | -1.69E-46 |
| MS.gene051959 | MS.gene29969 | 0.804148 | 2.48E-49 | -1.69E-46 |
| MS.gene051975 | MS.gene29969 | 0.80816 | 3.55E-50 | -1.69E-46 |
| MS.gene052533 | MS.gene29969 | 0.801104 | 1.05E-48 | -1.69E-46 |
| MS.gene053094 | MS.gene29969 | 0.809188 | 2.14E-50 | -1.69E-46 |
| MS.gene053726 | MS.gene29969 | 0.816626 | 5.02E-52 | -1.69E-46 |
| MS.gene05439 | MS.gene29969 | 0.802125 | 6.51E-49 | -1.69E-46 |
| MS.gene054892 | MS.gene29969 | 0.885551 | 7.38E-72 | -1.69E-46 |
| MS.gene054893 | MS.gene29969 | 0.884159 | 2.43E-71 | -1.69E-46 |
| MS.gene055147 | MS.gene29969 | 0.847316 | 1.25E-59 | -1.69E-46 |
| MS.gene055148 | MS.gene29969 | 0.833561 | 4.97E-56 | -1.69E-46 |
| MS.gene056699 | MS.gene29969 | 0.801896 | 7.25E-49 | -1.69E-46 |
| MS.gene056986 | MS.gene29969 | 0.810643 | 1.04E-50 | -1.69E-46 |
| MS.gene057174 | MS.gene29969 | 0.801759 | 7.74E-49 | -1.69E-46 |
| MS.gene057622 | MS.gene29969 | 0.820076 | 8.30E-53 | -1.69E-46 |
| MS.gene058095 | MS.gene29969 | 0.844645 | 6.65E-59 | -1.69E-46 |
| MS.gene058592 | MS.gene29969 | 0.819769 | 9.76E-53 | -1.69E-46 |
| MS.gene059170 | MS.gene29969 | 0.807409 | 5.13E-50 | -1.69E-46 |
| MS.gene05952 | MS.gene29969 | 0.81756 | 3.09E-52 | -1.69E-46 |
| MS.gene059774 | MS.gene29969 | 0.809521 | 1.82E-50 | -1.69E-46 |
| MS.gene05985 | MS.gene29969 | -0.804836 | 1.78E-49 | -1.69E-46 |
| MS.gene06023 | MS.gene29969 | 0.828841 | 7.18E-55 | -1.69E-46 |
| MS.gene060412 | MS.gene29969 | 0.818552 | 1.85E-52 | -1.69E-46 |
| MS.gene060413 | MS.gene29969 | 0.808578 | 2.89E-50 | -1.69E-46 |
| MS.gene060697 | MS.gene29969 | 0.808473 | 3.04E-50 | -1.69E-46 |
| MS.gene060840 | MS.gene29969 | 0.80784 | 4.15E-50 | -1.69E-46 |
| MS.gene060933 | MS.gene29969 | 0.80472 | 1.89E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29969.t1 | MTR_8g104930 | 95.054 | 465 | 15 | 3 | 1 | 459 | 1 | 463 | 0.0 | 874 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29969.t1 | AT2G01650 | 61.814 | 474 | 146 | 7 | 1 | 456 | 1 | 457 | 0.0 | 550 |
| MS.gene29969.t1 | AT2G01650 | 61.814 | 474 | 146 | 7 | 1 | 456 | 1 | 457 | 0.0 | 550 |
| MS.gene29969.t1 | AT2G01650 | 59.799 | 398 | 125 | 7 | 1 | 380 | 1 | 381 | 1.14e-153 | 441 |
Find 106 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTATTGGTACTTATGTTTC+AGG | 0.140987 | 4.3:+1586633 | MS.gene29969:CDS |
| GTAGGTTTGGGTTTGGGATT+AGG | 0.175605 | 4.3:-1586333 | None:intergenic |
| CGAAAGGGTTGTTTACAAAT+TGG | 0.223879 | 4.3:-1586489 | None:intergenic |
| CCCACAGCTTCTTTAATCTT+TGG | 0.237677 | 4.3:-1586756 | None:intergenic |
| CCTTTCACTTCTTCTTCTTC+TGG | 0.238978 | 4.3:+1586207 | MS.gene29969:CDS |
| CTAGGGGCTTGAACTTGATT+AGG | 0.247442 | 4.3:-1588514 | None:intergenic |
| GGTGTTAAAGTTTCTCTCTT+TGG | 0.252715 | 4.3:-1586939 | None:intergenic |
| TAGGTTTGGGTTTGGGATTA+GGG | 0.259606 | 4.3:-1586332 | None:intergenic |
| GATACACAAGAACTATTATT+AGG | 0.271026 | 4.3:+1588070 | MS.gene29969:CDS |
| TGAGAAGAGAAGCTGAATTA+AGG | 0.273073 | 4.3:+1587971 | MS.gene29969:CDS |
| GGTGGAGTAGGTTTGGGTTT+GGG | 0.283318 | 4.3:-1586339 | None:intergenic |
| GTCTTCTTCCTCTATCGTTT+TGG | 0.294303 | 4.3:-1588477 | None:intergenic |
| ATCAGTGAACCACTTGTAAA+TGG | 0.308403 | 4.3:+1588584 | MS.gene29969:CDS |
| GAAGCTGTGGGCGAGGTTAT+TGG | 0.314917 | 4.3:+1586768 | MS.gene29969:CDS |
| ACTGAATTGGAGATTTCTAT+TGG | 0.324761 | 4.3:+1586618 | MS.gene29969:CDS |
| TGCTTTAAAAGAATCATGTT+TGG | 0.332951 | 4.3:+1588382 | MS.gene29969:CDS |
| AAACAACAGAATCTGTTTCT+AGG | 0.337000 | 4.3:-1588532 | None:intergenic |
| CGGTGGAGTAGGTTTGGGTT+TGG | 0.338165 | 4.3:-1586340 | None:intergenic |
| TTCCTAAACTTAACATTCTC+AGG | 0.339946 | 4.3:-1586717 | None:intergenic |
| GTTGAATTGCTGAGTTTGTT+AGG | 0.350477 | 4.3:+1586795 | MS.gene29969:CDS |
| CGGAGAGACATGGGCATTCA+TGG | 0.352162 | 4.3:+1586839 | MS.gene29969:CDS |
| TTCTGAGTCTAATACTGAAT+TGG | 0.356720 | 4.3:+1586605 | MS.gene29969:CDS |
| TTCAGCTGAACGTTTGTAGA+AGG | 0.363666 | 4.3:-1587944 | None:intergenic |
| TCTTCTCAAAGATCTCAAAA+TGG | 0.368840 | 4.3:+1586441 | MS.gene29969:CDS |
| AGCGATCGGTGGAGTAGGTT+TGG | 0.369595 | 4.3:-1586346 | None:intergenic |
| ATGTTAAGTTTAGGAAGATT+AGG | 0.375559 | 4.3:+1586724 | MS.gene29969:CDS |
| CAAGAAAGCAATTGTGTTGT+TGG | 0.381393 | 4.3:+1586893 | MS.gene29969:CDS |
| GCGATCGGTGGAGTAGGTTT+GGG | 0.384107 | 4.3:-1586345 | None:intergenic |
| TAGGGGCTTGAACTTGATTA+GGG | 0.388598 | 4.3:-1588513 | None:intergenic |
| AGGGAATCCGTCTGAAGGTT+CGG | 0.417927 | 4.3:+1586653 | MS.gene29969:CDS |
| GGGGTAGGAATGGAATTTGC+AGG | 0.422062 | 4.3:-1586288 | None:intergenic |
| TCAGATGGAGTTGTACTTCA+AGG | 0.423651 | 4.3:+1588102 | MS.gene29969:CDS |
| AACCTGAGAATGTTAAGTTT+AGG | 0.430889 | 4.3:+1586715 | MS.gene29969:CDS |
| AAAGGCCAAGGTCGAGTCTT+GGG | 0.431284 | 4.3:+1586237 | MS.gene29969:CDS |
| ATTGTTGAGGAATATTGTTA+AGG | 0.431444 | 4.3:+1586692 | MS.gene29969:CDS |
| AACAACAGAATCTGTTTCTA+GGG | 0.439799 | 4.3:-1588531 | None:intergenic |
| GAACGTTTGTAGAAGGAATC+TGG | 0.447302 | 4.3:-1587937 | None:intergenic |
| CTATTGGTACTTATGTTTCA+GGG | 0.450380 | 4.3:+1586634 | MS.gene29969:CDS |
| TGTGTTGTTGGAACCACAAT+TGG | 0.459857 | 4.3:+1586905 | MS.gene29969:CDS |
| GGCTACTTTCTCAGCGGAAA+TGG | 0.460122 | 4.3:-1586964 | None:intergenic |
| ATCCCATGTTTCCCAAAAGC+AGG | 0.471596 | 4.3:+1588446 | MS.gene29969:CDS |
| TCTGAGAAGGACGAGGGGTA+GGG | 0.472504 | 4.3:-1586308 | None:intergenic |
| TCTTCTTCTGGTAAATTCAA+AGG | 0.474590 | 4.3:+1586219 | MS.gene29969:CDS |
| CAAAGGCCAAGGTCGAGTCT+TGG | 0.475772 | 4.3:+1586236 | MS.gene29969:CDS |
| TTCTGAGAAGGACGAGGGGT+AGG | 0.483289 | 4.3:-1586309 | None:intergenic |
| CTGAGAAGGACGAGGGGTAG+GGG | 0.483771 | 4.3:-1586307 | None:intergenic |
| GTTAGGATTTGAACTTAAAG+AGG | 0.484850 | 4.3:+1586812 | MS.gene29969:CDS |
| AACCTCGTCCTCGGATCGAA+AGG | 0.485306 | 4.3:-1586505 | None:intergenic |
| ACCAACTACTGCTCTGTATG+AGG | 0.485891 | 4.3:+1588143 | MS.gene29969:CDS |
| TTCAAGGTGTATTTGCTCCA+TGG | 0.496010 | 4.3:+1588118 | MS.gene29969:CDS |
| TAAGTTTAGGAAGATTAGGA+TGG | 0.496165 | 4.3:+1586728 | MS.gene29969:CDS |
| ACCCTTTCGATCCGAGGACG+AGG | 0.506482 | 4.3:+1586503 | MS.gene29969:CDS |
| CAGAAGAAGAAGAAGTGAAA+GGG | 0.507446 | 4.3:-1586206 | None:intergenic |
| CTACAAACGTTCAGCTGAAG+AGG | 0.515065 | 4.3:+1587948 | MS.gene29969:CDS |
| TCAAGGTGTATTTGCTCCAT+GGG | 0.515302 | 4.3:+1588119 | MS.gene29969:CDS |
| CCAGAAGAAGAAGAAGTGAA+AGG | 0.518931 | 4.3:-1586207 | None:intergenic |
| GAAGTGACGAATGAATCAAA+TGG | 0.527530 | 4.3:-1586420 | None:intergenic |
| ACCTCGTCCTCGGATCGAAA+GGG | 0.530145 | 4.3:-1586504 | None:intergenic |
| GTGTTCAGAAACCTCGTCCT+CGG | 0.530401 | 4.3:-1586514 | None:intergenic |
| ATATTGTTCTTAAATTGTTG+AGG | 0.534264 | 4.3:+1586679 | MS.gene29969:CDS |
| AAGAGGAGAACGGAGAGACA+TGG | 0.535036 | 4.3:+1586829 | MS.gene29969:CDS |
| AAGCCATCTGCGGGTTTGCG+TGG | 0.535106 | 4.3:-1586393 | None:intergenic |
| TTGCTTTGATCTGAAGCGAT+CGG | 0.538206 | 4.3:-1586360 | None:intergenic |
| CTTTGATCTGAAGCGATCGG+TGG | 0.538600 | 4.3:-1586357 | None:intergenic |
| AGAGCAGTAGTTGGTTCCCA+TGG | 0.544179 | 4.3:-1588135 | None:intergenic |
| ACACGCCGTTGAACAACTAC+AGG | 0.546054 | 4.3:-1588422 | None:intergenic |
| TCTGGTAAATTCAAAGGCCA+AGG | 0.550240 | 4.3:+1586225 | MS.gene29969:CDS |
| GAAGGACGAGGGGTAGGGGT+AGG | 0.552141 | 4.3:-1586303 | None:intergenic |
| TGATTAGGGCAGAAGGCACC+AGG | 0.553360 | 4.3:-1588499 | None:intergenic |
| TCCAAAGATTAAAGAAGCTG+TGG | 0.555466 | 4.3:+1586755 | MS.gene29969:CDS |
| GATTAAAGAAGCTGTGGGCG+AGG | 0.555589 | 4.3:+1586761 | MS.gene29969:CDS |
| ACGAGGGGTAGGGGTAGGAA+TGG | 0.557142 | 4.3:-1586298 | None:intergenic |
| AAATTAACTTTCTCCTCGGT+AGG | 0.559081 | 4.3:-1586867 | None:intergenic |
| TTGGGATTAGGGTTCTGAGA+AGG | 0.565323 | 4.3:-1586321 | None:intergenic |
| AAGTTTAGGAAGATTAGGAT+GGG | 0.568581 | 4.3:+1586729 | MS.gene29969:CDS |
| GGAGTATCTTGAACCAATTG+TGG | 0.569841 | 4.3:-1586918 | None:intergenic |
| AATGGATCAAAGCCATCTGC+GGG | 0.571592 | 4.3:-1586402 | None:intergenic |
| AATGCTTAACCATTTACAAG+TGG | 0.577084 | 4.3:-1588593 | None:intergenic |
| TCTGAAGCGATCGGTGGAGT+AGG | 0.577813 | 4.3:-1586351 | None:intergenic |
| GATCAAATTAACTTTCTCCT+CGG | 0.582104 | 4.3:-1586871 | None:intergenic |
| TTGAACTTGATTAGGGCAGA+AGG | 0.585290 | 4.3:-1588506 | None:intergenic |
| TAAACAACCCTTTCGATCCG+AGG | 0.585535 | 4.3:+1586497 | MS.gene29969:CDS |
| GATGTAAAAGACAAGATGAA+AGG | 0.585648 | 4.3:+1586162 | MS.gene29969:CDS |
| GTTTCAGGGAATCCGTCTGA+AGG | 0.588125 | 4.3:+1586648 | MS.gene29969:CDS |
| AAGAACCCAAGACTCGACCT+TGG | 0.590087 | 4.3:-1586242 | None:intergenic |
| ACCTCATACAGAGCAGTAGT+TGG | 0.594344 | 4.3:-1588144 | None:intergenic |
| TTTGAACTTAAAGAGGAGAA+CGG | 0.595229 | 4.3:+1586819 | MS.gene29969:CDS |
| TGCATCCTGTAGTTGTTCAA+CGG | 0.598631 | 4.3:+1588417 | MS.gene29969:CDS |
| AGAGGAGAACGGAGAGACAT+GGG | 0.598709 | 4.3:+1586830 | MS.gene29969:CDS |
| TTAGGGTTCTGAGAAGGACG+AGG | 0.599978 | 4.3:-1586315 | None:intergenic |
| AACGATAGAGGAAGAAGACC+TGG | 0.600898 | 4.3:+1588481 | MS.gene29969:CDS |
| AAATGGATCAAAGCCATCTG+CGG | 0.612029 | 4.3:-1586403 | None:intergenic |
| AAACCACGCAAACCCGCAGA+TGG | 0.614242 | 4.3:+1586390 | MS.gene29969:CDS |
| TCCCATGTTTCCCAAAAGCA+GGG | 0.615985 | 4.3:+1588447 | MS.gene29969:CDS |
| ACTTTCTCAGCGGAAATGGT+AGG | 0.622064 | 4.3:-1586960 | None:intergenic |
| CCAAAGATTAAAGAAGCTGT+GGG | 0.630530 | 4.3:+1586756 | MS.gene29969:CDS |
| ACAACAGAATCTGTTTCTAG+GGG | 0.631709 | 4.3:-1588530 | None:intergenic |
| TAGGGTTCTGAGAAGGACGA+GGG | 0.637909 | 4.3:-1586314 | None:intergenic |
| TTCCGCTGAGAAAGTAGCCG+AGG | 0.648892 | 4.3:+1586968 | MS.gene29969:CDS |
| GCTGTGGGCGAGGTTATTGG+TGG | 0.660528 | 4.3:+1586771 | MS.gene29969:CDS |
| ATATCAACCGAACCTTCAGA+CGG | 0.672141 | 4.3:-1586660 | None:intergenic |
| ATTCATGGAGGTTCCTACCG+AGG | 0.688667 | 4.3:+1586854 | MS.gene29969:CDS |
| GGACGAGGTTTCTGAACACG+TGG | 0.689204 | 4.3:+1586518 | MS.gene29969:CDS |
| AGAGACATGGGCATTCATGG+AGG | 0.712922 | 4.3:+1586842 | MS.gene29969:CDS |
| GGCCTCGGCTACTTTCTCAG+CGG | 0.713672 | 4.3:-1586970 | None:intergenic |
| AGGGTTCTGAGAAGGACGAG+GGG | 0.727880 | 4.3:-1586313 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGATTTTTTTTATTGTATT+AGG | - | chr4.3:1587413-1587432 | None:intergenic | 10.0% |
| !! | AAGTTAAAATCAAATAGAAA+AGG | - | chr4.3:1588174-1588193 | None:intergenic | 15.0% |
| !! | ACTAAAATACTCAAAGAAAA+AGG | - | chr4.3:1587744-1587763 | None:intergenic | 20.0% |
| !! | ATATTGTTCTTAAATTGTTG+AGG | + | chr4.3:1586679-1586698 | MS.gene29969:CDS | 20.0% |
| !! | CATAATCAATCTAAAGAATT+AGG | - | chr4.3:1587832-1587851 | None:intergenic | 20.0% |
| !! | TTGCATAAAAGTAGAAAAAT+CGG | + | chr4.3:1587431-1587450 | MS.gene29969:intron | 20.0% |
| !!! | ATAAAAACTATTTTCAACCA+AGG | + | chr4.3:1587456-1587475 | MS.gene29969:intron | 20.0% |
| !!! | ATATACTGAAATTTGTTGAT+AGG | + | chr4.3:1587212-1587231 | MS.gene29969:intron | 20.0% |
| !!! | TAAAAACTATTTTCAACCAA+GGG | + | chr4.3:1587457-1587476 | MS.gene29969:intron | 20.0% |
| !!! | TTGAATATTTGGTTTAAACT+TGG | + | chr4.3:1587122-1587141 | MS.gene29969:intron | 20.0% |
| !!! | TTTGTATGTTGGTTTAAATT+TGG | + | chr4.3:1587247-1587266 | MS.gene29969:intron | 20.0% |
| ! | AAACTTGGTTGTATAAATAG+AGG | + | chr4.3:1587137-1587156 | MS.gene29969:intron | 25.0% |
| ! | AACTTGGTTGTATAAATAGA+GGG | + | chr4.3:1587138-1587157 | MS.gene29969:intron | 25.0% |
| ! | ATGTTAAGTTTAGGAAGATT+AGG | + | chr4.3:1586724-1586743 | MS.gene29969:CDS | 25.0% |
| ! | ATTGTTGAGGAATATTGTTA+AGG | + | chr4.3:1586692-1586711 | MS.gene29969:CDS | 25.0% |
| ! | CAATATAGCTTATGAAAACA+GGG | - | chr4.3:1587552-1587571 | None:intergenic | 25.0% |
| ! | GATACACAAGAACTATTATT+AGG | + | chr4.3:1588070-1588089 | MS.gene29969:CDS | 25.0% |
| ! | TTAAACCAACATACAAAAGT+TGG | - | chr4.3:1587244-1587263 | None:intergenic | 25.0% |
| !! | TCCAAACGTAAATTGTTATT+TGG | - | chr4.3:1588242-1588261 | None:intergenic | 25.0% |
| !!! | ATGTCATAAGCTATTTTCAT+AGG | + | chr4.3:1587619-1587638 | MS.gene29969:intron | 25.0% |
| !!! | CAAACGTAAATTGTTATTTG+GGG | - | chr4.3:1588240-1588259 | None:intergenic | 25.0% |
| !!! | CCAAACGTAAATTGTTATTT+GGG | - | chr4.3:1588241-1588260 | None:intergenic | 25.0% |
| !!! | CTTTGAGTATTTTAGTTTGA+TGG | + | chr4.3:1587748-1587767 | MS.gene29969:intron | 25.0% |
| !!! | TGCTTTAAAAGAATCATGTT+TGG | + | chr4.3:1588382-1588401 | MS.gene29969:CDS | 25.0% |
| AACCTGAGAATGTTAAGTTT+AGG | + | chr4.3:1586715-1586734 | MS.gene29969:CDS | 30.0% | |
| AAGTTTAGGAAGATTAGGAT+GGG | + | chr4.3:1586729-1586748 | MS.gene29969:CDS | 30.0% | |
| ACTGAATTGGAGATTTCTAT+TGG | + | chr4.3:1586618-1586637 | MS.gene29969:CDS | 30.0% | |
| ACTTGGTTGTATAAATAGAG+GGG | + | chr4.3:1587139-1587158 | MS.gene29969:intron | 30.0% | |
| CCAATATAGCTTATGAAAAC+AGG | - | chr4.3:1587553-1587572 | None:intergenic | 30.0% | |
| CCAGTAGATAAACTCAAATA+AGG | + | chr4.3:1587672-1587691 | MS.gene29969:intron | 30.0% | |
| CCCAAATAACAATTTACGTT+TGG | + | chr4.3:1588238-1588257 | MS.gene29969:intron | 30.0% | |
| CTATTGGTACTTATGTTTCA+GGG | + | chr4.3:1586634-1586653 | MS.gene29969:CDS | 30.0% | |
| GATCAAATTAACTTTCTCCT+CGG | - | chr4.3:1586874-1586893 | None:intergenic | 30.0% | |
| GATGTAAAAGACAAGATGAA+AGG | + | chr4.3:1586162-1586181 | MS.gene29969:CDS | 30.0% | |
| GATTCAAATTTACCTCTTTC+AGG | + | chr4.3:1587864-1587883 | MS.gene29969:intron | 30.0% | |
| GGTTAATTTCCACAATTGAA+AGG | - | chr4.3:1588200-1588219 | None:intergenic | 30.0% | |
| GTTAGGATTTGAACTTAAAG+AGG | + | chr4.3:1586812-1586831 | MS.gene29969:CDS | 30.0% | |
| TAACTTATGCCTTTCAATTG+TGG | + | chr4.3:1588188-1588207 | MS.gene29969:intron | 30.0% | |
| TAAGTTTAGGAAGATTAGGA+TGG | + | chr4.3:1586728-1586747 | MS.gene29969:CDS | 30.0% | |
| TATTAGGATGAGTTTCTCTT+GGG | - | chr4.3:1587397-1587416 | None:intergenic | 30.0% | |
| TCAAATAAGGTAATCCAAAC+AGG | + | chr4.3:1587685-1587704 | MS.gene29969:intron | 30.0% | |
| TCTATTGGTACTTATGTTTC+AGG | + | chr4.3:1586633-1586652 | MS.gene29969:CDS | 30.0% | |
| TCTTCTCAAAGATCTCAAAA+TGG | + | chr4.3:1586441-1586460 | MS.gene29969:CDS | 30.0% | |
| TCTTCTTCTGGTAAATTCAA+AGG | + | chr4.3:1586219-1586238 | MS.gene29969:CDS | 30.0% | |
| TGCTTAAACCTTTACTTGAT+AGG | - | chr4.3:1587329-1587348 | None:intergenic | 30.0% | |
| TTAAATTTGGCTGTAATGCA+AGG | + | chr4.3:1587260-1587279 | MS.gene29969:intron | 30.0% | |
| TTCCTAAACTTAACATTCTC+AGG | - | chr4.3:1586720-1586739 | None:intergenic | 30.0% | |
| TTCTGAGTCTAATACTGAAT+TGG | + | chr4.3:1586605-1586624 | MS.gene29969:CDS | 30.0% | |
| TTTGAACTTAAAGAGGAGAA+CGG | + | chr4.3:1586819-1586838 | MS.gene29969:CDS | 30.0% | |
| ! | AAACAACAGAATCTGTTTCT+AGG | - | chr4.3:1588535-1588554 | None:intergenic | 30.0% |
| ! | ACATCATCATCGTTTTCAAT+TGG | - | chr4.3:1586561-1586580 | None:intergenic | 30.0% |
| ! | ATTAGGATTCAGTTTTCAGA+TGG | + | chr4.3:1588087-1588106 | MS.gene29969:CDS | 30.0% |
| ! | CAAGGGTATACTTTGTTTAT+GGG | + | chr4.3:1587474-1587493 | MS.gene29969:intron | 30.0% |
| ! | CATCATCATCGTTTTCAATT+GGG | - | chr4.3:1586560-1586579 | None:intergenic | 30.0% |
| ! | CCTGTTTTCATAAGCTATAT+TGG | + | chr4.3:1587550-1587569 | MS.gene29969:intron | 30.0% |
| ! | CCTTATTTGAGTTTATCTAC+TGG | - | chr4.3:1587675-1587694 | None:intergenic | 30.0% |
| ! | GCTTTTCTTTAAGTGACTTT+GGG | - | chr4.3:1588029-1588048 | None:intergenic | 30.0% |
| ! | TGCTTTTCTTTAAGTGACTT+TGG | - | chr4.3:1588030-1588049 | None:intergenic | 30.0% |
| ! | TTTGTCCAACTTTTGTATGT+TGG | + | chr4.3:1587236-1587255 | MS.gene29969:intron | 30.0% |
| ! | TTTTTCATAAAGAGCCTGTT+TGG | - | chr4.3:1587702-1587721 | None:intergenic | 30.0% |
| !! | AACAACAGAATCTGTTTCTA+GGG | - | chr4.3:1588534-1588553 | None:intergenic | 30.0% |
| !!! | TCTGTCAATCTTTTTTGGTT+CGG | - | chr4.3:1586994-1587013 | None:intergenic | 30.0% |
| AAATTAACTTTCTCCTCGGT+AGG | - | chr4.3:1586870-1586889 | None:intergenic | 35.0% | |
| AACAGTAAGACACTAACACT+TGG | - | chr4.3:1588298-1588317 | None:intergenic | 35.0% | |
| ACAGTAAGACACTAACACTT+GGG | - | chr4.3:1588297-1588316 | None:intergenic | 35.0% | |
| ACCAAAAAAGATTGACAGAC+AGG | + | chr4.3:1586995-1587014 | MS.gene29969:CDS | 35.0% | |
| ACCTTTACTTGATAGGATTG+TGG | - | chr4.3:1587322-1587341 | None:intergenic | 35.0% | |
| ATCAGTGAACCACTTGTAAA+TGG | + | chr4.3:1588584-1588603 | MS.gene29969:CDS | 35.0% | |
| ATTAGGATGAGTTTCTCTTG+GGG | - | chr4.3:1587396-1587415 | None:intergenic | 35.0% | |
| CAAGAAAGCAATTGTGTTGT+TGG | + | chr4.3:1586893-1586912 | MS.gene29969:CDS | 35.0% | |
| CACAAACTGCATTATCAACA+TGG | - | chr4.3:1588357-1588376 | None:intergenic | 35.0% | |
| CAGAAGAAGAAGAAGTGAAA+GGG | - | chr4.3:1586209-1586228 | None:intergenic | 35.0% | |
| CCAAAGATTAAAGAAGCTGT+GGG | + | chr4.3:1586756-1586775 | MS.gene29969:CDS | 35.0% | |
| CCATAAACAAAGTATACCCT+TGG | - | chr4.3:1587476-1587495 | None:intergenic | 35.0% | |
| CGAAAGGGTTGTTTACAAAT+TGG | - | chr4.3:1586492-1586511 | None:intergenic | 35.0% | |
| CTACTAAGCTGAAGAAGTTA+TGG | + | chr4.3:1587352-1587371 | MS.gene29969:intron | 35.0% | |
| CTTGGGGTGTAAATATACTT+GGG | - | chr4.3:1587380-1587399 | None:intergenic | 35.0% | |
| GAAGTGACGAATGAATCAAA+TGG | - | chr4.3:1586423-1586442 | None:intergenic | 35.0% | |
| GGTGTTAAAGTTTCTCTCTT+TGG | - | chr4.3:1586942-1586961 | None:intergenic | 35.0% | |
| GTATTAGGATGAGTTTCTCT+TGG | - | chr4.3:1587398-1587417 | None:intergenic | 35.0% | |
| TCCAAAGATTAAAGAAGCTG+TGG | + | chr4.3:1586755-1586774 | MS.gene29969:CDS | 35.0% | |
| TCCACAATCCTATCAAGTAA+AGG | + | chr4.3:1587318-1587337 | MS.gene29969:intron | 35.0% | |
| TCTTACTGTTTATTCCGAGT+TGG | + | chr4.3:1588308-1588327 | MS.gene29969:intron | 35.0% | |
| TCTTGGGGTGTAAATATACT+TGG | - | chr4.3:1587381-1587400 | None:intergenic | 35.0% | |
| TGAGAAGAGAAGCTGAATTA+AGG | + | chr4.3:1587971-1587990 | MS.gene29969:CDS | 35.0% | |
| TGTTGGGAAGTAATTGTGTA+GGG | + | chr4.3:1587181-1587200 | MS.gene29969:intron | 35.0% | |
| TTACTTGATAGGATTGTGGA+TGG | - | chr4.3:1587318-1587337 | None:intergenic | 35.0% | |
| ! | AATTTACCTCTTTCAGGTGA+AGG | + | chr4.3:1587870-1587889 | MS.gene29969:intron | 35.0% |
| ! | CCAAGGGTATACTTTGTTTA+TGG | + | chr4.3:1587473-1587492 | MS.gene29969:intron | 35.0% |
| ! | GTTGAATTGCTGAGTTTGTT+AGG | + | chr4.3:1586795-1586814 | MS.gene29969:CDS | 35.0% |
| !! | ACAACAGAATCTGTTTCTAG+GGG | - | chr4.3:1588533-1588552 | None:intergenic | 35.0% |
| !! | TTTTGCACAGTTTGAGACTA+GGG | + | chr4.3:1587098-1587117 | MS.gene29969:intron | 35.0% |
| !!! | ACAGATTCTGTTGTTTTCAC+CGG | + | chr4.3:1588539-1588558 | MS.gene29969:CDS | 35.0% |
| !!! | ACCTGTCTGTCAATCTTTTT+TGG | - | chr4.3:1586999-1587018 | None:intergenic | 35.0% |
| !!! | CAGCAATTCATTTTTGAGAC+CGG | - | chr4.3:1588561-1588580 | None:intergenic | 35.0% |
| AAATGGATCAAAGCCATCTG+CGG | - | chr4.3:1586406-1586425 | None:intergenic | 40.0% | |
| AAGCAATTGTGAGACTGTTC+GGG | - | chr4.3:1587649-1587668 | None:intergenic | 40.0% | |
| AAGTAAACTGTGGGTTCTGT+TGG | + | chr4.3:1587164-1587183 | MS.gene29969:intron | 40.0% | |
| AGAGGGGAAAAGTAAACTGT+GGG | + | chr4.3:1587155-1587174 | MS.gene29969:intron | 40.0% | |
| AGCTTATGAAAACAGGGTCA+TGG | - | chr4.3:1587546-1587565 | None:intergenic | 40.0% | |
| AGTAAACTGTGGGTTCTGTT+GGG | + | chr4.3:1587165-1587184 | MS.gene29969:intron | 40.0% | |
| ATATCAACCGAACCTTCAGA+CGG | - | chr4.3:1586663-1586682 | None:intergenic | 40.0% | |
| CAAGCAATTGTGAGACTGTT+CGG | - | chr4.3:1587650-1587669 | None:intergenic | 40.0% | |
| CCAGAAGAAGAAGAAGTGAA+AGG | - | chr4.3:1586210-1586229 | None:intergenic | 40.0% | |
| CCCACAGCTTCTTTAATCTT+TGG | - | chr4.3:1586759-1586778 | None:intergenic | 40.0% | |
| CCTTTCACTTCTTCTTCTTC+TGG | + | chr4.3:1586207-1586226 | MS.gene29969:CDS | 40.0% | |
| CGGTCTCAAAAATGAATTGC+TGG | + | chr4.3:1588559-1588578 | MS.gene29969:CDS | 40.0% | |
| CTGTTGGGAAGTAATTGTGT+AGG | + | chr4.3:1587180-1587199 | MS.gene29969:intron | 40.0% | |
| GAACGTTTGTAGAAGGAATC+TGG | - | chr4.3:1587940-1587959 | None:intergenic | 40.0% | |
| GAGACTAGGGCTTGAATATT+TGG | + | chr4.3:1587111-1587130 | MS.gene29969:intron | 40.0% | |
| GCAAAAAGCCAAAACGATAG+AGG | + | chr4.3:1588469-1588488 | MS.gene29969:CDS | 40.0% | |
| TAATGACACACATGCTCTGT+GGG | - | chr4.3:1587786-1587805 | None:intergenic | 40.0% | |
| TAGAGGGGAAAAGTAAACTG+TGG | + | chr4.3:1587154-1587173 | MS.gene29969:intron | 40.0% | |
| TAGGGGCTTGAACTTGATTA+GGG | - | chr4.3:1588516-1588535 | None:intergenic | 40.0% | |
| TCAAGGTGTATTTGCTCCAT+GGG | + | chr4.3:1588119-1588138 | MS.gene29969:CDS | 40.0% | |
| TCAGATGGAGTTGTACTTCA+AGG | + | chr4.3:1588102-1588121 | MS.gene29969:CDS | 40.0% | |
| TCTGGTAAATTCAAAGGCCA+AGG | + | chr4.3:1586225-1586244 | MS.gene29969:CDS | 40.0% | |
| TGCATCCTGTAGTTGTTCAA+CGG | + | chr4.3:1588417-1588436 | MS.gene29969:CDS | 40.0% | |
| TTAATGACACACATGCTCTG+TGG | - | chr4.3:1587787-1587806 | None:intergenic | 40.0% | |
| TTCAAGGTGTATTTGCTCCA+TGG | + | chr4.3:1588118-1588137 | MS.gene29969:CDS | 40.0% | |
| TTCAGCTGAACGTTTGTAGA+AGG | - | chr4.3:1587947-1587966 | None:intergenic | 40.0% | |
| TTGAACTTGATTAGGGCAGA+AGG | - | chr4.3:1588509-1588528 | None:intergenic | 40.0% | |
| ! | GGAGTATCTTGAACCAATTG+TGG | - | chr4.3:1586921-1586940 | None:intergenic | 40.0% |
| ! | GGGGAACTTTTATGTCAGAA+CGG | - | chr4.3:1588221-1588240 | None:intergenic | 40.0% |
| ! | GTCTTCTTCCTCTATCGTTT+TGG | - | chr4.3:1588480-1588499 | None:intergenic | 40.0% |
| ! | TAGGTTTGGGTTTGGGATTA+GGG | - | chr4.3:1586335-1586354 | None:intergenic | 40.0% |
| ! | TGTGTTGTTGGAACCACAAT+TGG | + | chr4.3:1586905-1586924 | MS.gene29969:CDS | 40.0% |
| ! | TTGCTTTGATCTGAAGCGAT+CGG | - | chr4.3:1586363-1586382 | None:intergenic | 40.0% |
| !! | GTTTTGCACAGTTTGAGACT+AGG | + | chr4.3:1587097-1587116 | MS.gene29969:intron | 40.0% |
| !!! | AATCTTTTTTGGTTCGGCCT+CGG | - | chr4.3:1586988-1587007 | None:intergenic | 40.0% |
| AACGATAGAGGAAGAAGACC+TGG | + | chr4.3:1588481-1588500 | MS.gene29969:CDS | 45.0% | |
| AATGGATCAAAGCCATCTGC+GGG | - | chr4.3:1586405-1586424 | None:intergenic | 45.0% | |
| ACAATGCTGAGTTGCCAACT+CGG | - | chr4.3:1588325-1588344 | None:intergenic | 45.0% | |
| ACCAACTACTGCTCTGTATG+AGG | + | chr4.3:1588143-1588162 | MS.gene29969:CDS | 45.0% | |
| ACCTCATACAGAGCAGTAGT+TGG | - | chr4.3:1588147-1588166 | None:intergenic | 45.0% | |
| ACTTTCTCAGCGGAAATGGT+AGG | - | chr4.3:1586963-1586982 | None:intergenic | 45.0% | |
| AGAAGACCTTCACCTGAAAG+AGG | - | chr4.3:1587879-1587898 | None:intergenic | 45.0% | |
| ATCCCATGTTTCCCAAAAGC+AGG | + | chr4.3:1588446-1588465 | MS.gene29969:CDS | 45.0% | |
| CTACAAACGTTCAGCTGAAG+AGG | + | chr4.3:1587948-1587967 | MS.gene29969:CDS | 45.0% | |
| CTAGGGGCTTGAACTTGATT+AGG | - | chr4.3:1588517-1588536 | None:intergenic | 45.0% | |
| GGGAAGTAATTGTGTAGGGT+TGG | + | chr4.3:1587185-1587204 | MS.gene29969:intron | 45.0% | |
| TAAACAACCCTTTCGATCCG+AGG | + | chr4.3:1586497-1586516 | MS.gene29969:CDS | 45.0% | |
| TCCCATGTTTCCCAAAAGCA+GGG | + | chr4.3:1588447-1588466 | MS.gene29969:CDS | 45.0% | |
| ! | GTAGGTTTGGGTTTGGGATT+AGG | - | chr4.3:1586336-1586355 | None:intergenic | 45.0% |
| !! | TGGCTTTTTGCCCTGCTTTT+GGG | - | chr4.3:1588460-1588479 | None:intergenic | 45.0% |
| !! | TTGGCTTTTTGCCCTGCTTT+TGG | - | chr4.3:1588461-1588480 | None:intergenic | 45.0% |
| !! | TTGGGATTAGGGTTCTGAGA+AGG | - | chr4.3:1586324-1586343 | None:intergenic | 45.0% |
| AAAGGCCAAGGTCGAGTCTT+GGG | + | chr4.3:1586237-1586256 | MS.gene29969:CDS | 50.0% | |
| AAGAACCCAAGACTCGACCT+TGG | - | chr4.3:1586245-1586264 | None:intergenic | 50.0% | |
| AAGAGGAGAACGGAGAGACA+TGG | + | chr4.3:1586829-1586848 | MS.gene29969:CDS | 50.0% | |
| ACACGCCGTTGAACAACTAC+AGG | - | chr4.3:1588425-1588444 | None:intergenic | 50.0% | |
| AGAGACATGGGCATTCATGG+AGG | + | chr4.3:1586842-1586861 | MS.gene29969:CDS | 50.0% | |
| AGAGGAGAACGGAGAGACAT+GGG | + | chr4.3:1586830-1586849 | MS.gene29969:CDS | 50.0% | |
| AGGGAATCCGTCTGAAGGTT+CGG | + | chr4.3:1586653-1586672 | MS.gene29969:CDS | 50.0% | |
| ATTCATGGAGGTTCCTACCG+AGG | + | chr4.3:1586854-1586873 | MS.gene29969:CDS | 50.0% | |
| GATTAAAGAAGCTGTGGGCG+AGG | + | chr4.3:1586761-1586780 | MS.gene29969:CDS | 50.0% | |
| GGGGTAGGAATGGAATTTGC+AGG | - | chr4.3:1586291-1586310 | None:intergenic | 50.0% | |
| GTGTTCAGAAACCTCGTCCT+CGG | - | chr4.3:1586517-1586536 | None:intergenic | 50.0% | |
| GTTTCAGGGAATCCGTCTGA+AGG | + | chr4.3:1586648-1586667 | MS.gene29969:CDS | 50.0% | |
| ! | AGAGCAGTAGTTGGTTCCCA+TGG | - | chr4.3:1588138-1588157 | None:intergenic | 50.0% |
| ! | CTTTGATCTGAAGCGATCGG+TGG | - | chr4.3:1586360-1586379 | None:intergenic | 50.0% |
| ! | GGCTACTTTCTCAGCGGAAA+TGG | - | chr4.3:1586967-1586986 | None:intergenic | 50.0% |
| ! | GGTGGAGTAGGTTTGGGTTT+GGG | - | chr4.3:1586342-1586361 | None:intergenic | 50.0% |
| !! | GCCCTGCTTTTGGGAAACAT+GGG | - | chr4.3:1588451-1588470 | None:intergenic | 50.0% |
| !! | TAGGGTTCTGAGAAGGACGA+GGG | - | chr4.3:1586317-1586336 | None:intergenic | 50.0% |
| !! | TGCCCTGCTTTTGGGAAACA+TGG | - | chr4.3:1588452-1588471 | None:intergenic | 50.0% |
| !! | TTAGGGTTCTGAGAAGGACG+AGG | - | chr4.3:1586318-1586337 | None:intergenic | 50.0% |
| AAACCACGCAAACCCGCAGA+TGG | + | chr4.3:1586390-1586409 | MS.gene29969:CDS | 55.0% | |
| AACCTCGTCCTCGGATCGAA+AGG | - | chr4.3:1586508-1586527 | None:intergenic | 55.0% | |
| ACCTCGTCCTCGGATCGAAA+GGG | - | chr4.3:1586507-1586526 | None:intergenic | 55.0% | |
| AGCGATCGGTGGAGTAGGTT+TGG | - | chr4.3:1586349-1586368 | None:intergenic | 55.0% | |
| CAAAGGCCAAGGTCGAGTCT+TGG | + | chr4.3:1586236-1586255 | MS.gene29969:CDS | 55.0% | |
| CGGAGAGACATGGGCATTCA+TGG | + | chr4.3:1586839-1586858 | MS.gene29969:CDS | 55.0% | |
| GAAGCTGTGGGCGAGGTTAT+TGG | + | chr4.3:1586768-1586787 | MS.gene29969:CDS | 55.0% | |
| GCGATCGGTGGAGTAGGTTT+GGG | - | chr4.3:1586348-1586367 | None:intergenic | 55.0% | |
| GGACGAGGTTTCTGAACACG+TGG | + | chr4.3:1586518-1586537 | MS.gene29969:CDS | 55.0% | |
| TCTGAGAAGGACGAGGGGTA+GGG | - | chr4.3:1586311-1586330 | None:intergenic | 55.0% | |
| TTCCGCTGAGAAAGTAGCCG+AGG | + | chr4.3:1586968-1586987 | MS.gene29969:CDS | 55.0% | |
| ! | CGGTGGAGTAGGTTTGGGTT+TGG | - | chr4.3:1586343-1586362 | None:intergenic | 55.0% |
| ! | TCTGAAGCGATCGGTGGAGT+AGG | - | chr4.3:1586354-1586373 | None:intergenic | 55.0% |
| ! | TTCTGAGAAGGACGAGGGGT+AGG | - | chr4.3:1586312-1586331 | None:intergenic | 55.0% |
| !! | AGGGTTCTGAGAAGGACGAG+GGG | - | chr4.3:1586316-1586335 | None:intergenic | 55.0% |
| !! | TGATTAGGGCAGAAGGCACC+AGG | - | chr4.3:1588502-1588521 | None:intergenic | 55.0% |
| AAGCCATCTGCGGGTTTGCG+TGG | - | chr4.3:1586396-1586415 | None:intergenic | 60.0% | |
| ACCCTTTCGATCCGAGGACG+AGG | + | chr4.3:1586503-1586522 | MS.gene29969:CDS | 60.0% | |
| ACGAGGGGTAGGGGTAGGAA+TGG | - | chr4.3:1586301-1586320 | None:intergenic | 60.0% | |
| CTGAGAAGGACGAGGGGTAG+GGG | - | chr4.3:1586310-1586329 | None:intergenic | 60.0% | |
| GCTGTGGGCGAGGTTATTGG+TGG | + | chr4.3:1586771-1586790 | MS.gene29969:CDS | 60.0% | |
| ! | GGCCTCGGCTACTTTCTCAG+CGG | - | chr4.3:1586973-1586992 | None:intergenic | 60.0% |
| GAAGGACGAGGGGTAGGGGT+AGG | - | chr4.3:1586306-1586325 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 1586156 | 1588610 | 1586156 | ID=MS.gene29969 |
| chr4.3 | mRNA | 1586156 | 1588610 | 1586156 | ID=MS.gene29969.t1;Parent=MS.gene29969 |
| chr4.3 | exon | 1586156 | 1587016 | 1586156 | ID=MS.gene29969.t1.exon1;Parent=MS.gene29969.t1 |
| chr4.3 | CDS | 1586156 | 1587016 | 1586156 | ID=cds.MS.gene29969.t1;Parent=MS.gene29969.t1 |
| chr4.3 | exon | 1587886 | 1588164 | 1587886 | ID=MS.gene29969.t1.exon2;Parent=MS.gene29969.t1 |
| chr4.3 | CDS | 1587886 | 1588164 | 1587886 | ID=cds.MS.gene29969.t1;Parent=MS.gene29969.t1 |
| chr4.3 | exon | 1588371 | 1588610 | 1588371 | ID=MS.gene29969.t1.exon3;Parent=MS.gene29969.t1 |
| chr4.3 | CDS | 1588371 | 1588610 | 1588371 | ID=cds.MS.gene29969.t1;Parent=MS.gene29969.t1 |
| Gene Sequence |
| Protein sequence |
