AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene34115


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene34115.t1 MTR_1g093770 97.115 312 9 0 1 312 1 312 0.0 628
MS.gene34115.t1 MTR_2g070740 30.000 200 121 5 11 205 8 193 6.18e-21 91.7
MS.gene34115.t1 MTR_8g008730 30.000 200 121 5 11 205 8 193 8.71e-21 89.7
MS.gene34115.t1 MTR_8g008730 30.000 200 121 5 11 205 8 193 1.73e-20 90.5
MS.gene34115.t1 MTR_3g101280 70.370 54 11 1 32 85 51 99 4.94e-20 86.7
MS.gene34115.t1 MTR_1g073720 29.000 200 121 6 11 205 8 191 1.34e-17 82.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene34115.t1 AT1G25682 72.990 311 81 2 1 311 1 308 4.94e-170 474
MS.gene34115.t1 AT1G25682 72.990 311 81 2 1 311 1 308 4.94e-170 474
MS.gene34115.t1 AT1G25988 75.641 78 19 0 103 180 27 104 2.36e-36 129
MS.gene34115.t1 AT1G17130 28.502 207 129 5 11 212 8 200 5.97e-19 86.3
MS.gene34115.t1 AT1G17130 27.570 214 129 5 11 212 8 207 5.33e-18 83.6
MS.gene34115.t1 AT3G43250 33.945 109 58 3 11 117 8 104 1.86e-13 69.3

Find 73 sgRNAs with CRISPR-Local

Find 216 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAGGGTATCTTGATTATA+AGG 0.255625 1.2:+74812996 MS.gene34115:CDS
GACGGGCAATCCAGGGAATA+TGG 0.258001 1.2:-74814958 None:intergenic
ATCACATACTCACAGTTCTT+TGG 0.264942 1.2:-74814155 None:intergenic
TGGTGTTCAAGGCGGTAAAA+TGG 0.307792 1.2:-74814557 None:intergenic
ACCTGGCTTGGATCCCATTC+TGG 0.311079 1.2:-74812834 None:intergenic
TTGAGATGCCTTATAATATA+TGG 0.313340 1.2:+74813470 MS.gene34115:CDS
CCTCCGCACCATATATTATA+AGG 0.317386 1.2:-74813478 None:intergenic
TTTCTAGTGTCTTGCATTCA+TGG 0.318374 1.2:-74815129 None:intergenic
GAGAGCAAGGAAGTTAGATC+AGG 0.349867 1.2:+74812979 MS.gene34115:CDS
TCTACAGCATGCAGCTTTCA+TGG 0.350388 1.2:-74814108 None:intergenic
AAGCGCAGCATCTAGCCTTT+TGG 0.353767 1.2:+74815040 MS.gene34115:CDS
GGCATAGTCGTCCGAATGTC+TGG 0.372030 1.2:-74814648 None:intergenic
CAAGTAACATACTCTAAGTT+TGG 0.373219 1.2:-74814690 None:intergenic
AATCTTCCTCCTGGTGTTCA+AGG 0.398061 1.2:-74814568 None:intergenic
GCATCTAGGAAAAGGGGCCT+TGG 0.407781 1.2:+74814822 MS.gene34115:CDS
ATGGATGAGACGGGCAATCC+AGG 0.417753 1.2:-74814966 None:intergenic
GGTTCTCTGAACAAGTTTCA+TGG 0.426891 1.2:+74812938 MS.gene34115:CDS
GCTTCTTCTCTGCATTGAAC+CGG 0.428388 1.2:-74813528 None:intergenic
AATGTCTGATGCCAGACATT+CGG 0.444983 1.2:+74814637 MS.gene34115:CDS
GTTCTTTGGATCAGTTTGAA+TGG 0.451321 1.2:-74814141 None:intergenic
CATCTAGGAAAAGGGGCCTT+GGG 0.455684 1.2:+74814823 MS.gene34115:CDS
TGTTCTGTCAAGCAGGCAAA+AGG 0.461856 1.2:+74815100 MS.gene34115:CDS
CGCTGGAGACGCACAAGCAC+TGG 0.464581 1.2:-74814614 None:intergenic
AAGAAGCTGCATCTAGGAAA+AGG 0.464590 1.2:+74814814 MS.gene34115:CDS
AGAAGCTGCATCTAGGAAAA+GGG 0.469824 1.2:+74814815 MS.gene34115:CDS
CTATGATTGCAAAGGGTGTC+CGG 0.472676 1.2:+74813509 MS.gene34115:CDS
ATGCAGAGAAGAAGCAAGTT+GGG 0.475460 1.2:+74813536 MS.gene34115:CDS
GTCTGGCATCAGACATTCGC+TGG 0.492170 1.2:-74814631 None:intergenic
ACGGGCAATCCAGGGAATAT+GGG 0.497967 1.2:-74814957 None:intergenic
GCAGCATCTTGTTCTGAAGC+TGG 0.501516 1.2:-74814858 None:intergenic
GAAAGCTGCATGCTGTAGAC+AGG 0.504885 1.2:+74814112 MS.gene34115:CDS
AATGCTGCTCCCATATTCCC+TGG 0.508968 1.2:+74814948 MS.gene34115:CDS
GTACGCAAATATACCTGGCT+TGG 0.510300 1.2:-74812846 None:intergenic
CTGAAGAAGAAGCTGCATCT+AGG 0.513065 1.2:+74814808 MS.gene34115:CDS
TCCAGAATGGGATCCAAGCC+AGG 0.514395 1.2:+74812833 MS.gene34115:CDS
CAGCCTTCTCTTACCAGACA+TGG 0.522667 1.2:-74814985 None:intergenic
GTTTATACCCTCCAGCCAAA+AGG 0.523272 1.2:-74815055 None:intergenic
TTGCCCGTCTCATCCATGTC+TGG 0.524578 1.2:+74814972 MS.gene34115:CDS
GAGGGTATAAACCGTCATCT+TGG 0.526453 1.2:+74815066 MS.gene34115:CDS
TGCAATTCTATGATTGCAAA+GGG 0.527726 1.2:+74813502 MS.gene34115:CDS
TTCGAGTTACCTGCTGATGA+AGG 0.528478 1.2:+74814233 MS.gene34115:CDS
AATGCAGAGAAGAAGCAAGT+TGG 0.531409 1.2:+74813535 MS.gene34115:CDS
TAAACCGTCATCTTGGTCAC+AGG 0.534179 1.2:+74815073 MS.gene34115:CDS
AGGGAGCTGTTCTGTCAAGC+AGG 0.536545 1.2:+74815093 MS.gene34115:CDS
CTTCCTTGCTCTCTCTCTCA+AGG 0.536908 1.2:-74812969 None:intergenic
TCATGCACACCTTCATCAGC+AGG 0.543966 1.2:-74814242 None:intergenic
AAATTTGTGTTACAGAGAGA+GGG 0.546667 1.2:+74814522 MS.gene34115:intron
AACATACTCTAAGTTTGGCC+CGG 0.552541 1.2:-74814685 None:intergenic
CATGTCTGGTAAGAGAAGGC+TGG 0.552595 1.2:+74814986 MS.gene34115:CDS
TGGATGAGACGGGCAATCCA+GGG 0.561142 1.2:-74814965 None:intergenic
GAACTTCACTTTCGCTGCTG+CGG 0.562222 1.2:-74814880 None:intergenic
GTTCTGTCAAGCAGGCAAAA+GGG 0.575210 1.2:+74815101 MS.gene34115:CDS
ATGCCTTGAGAGAGAGAGCA+AGG 0.581873 1.2:+74812966 MS.gene34115:CDS
ATGCAATTCTATGATTGCAA+AGG 0.583657 1.2:+74813501 MS.gene34115:CDS
ATCTGCTCTAGCAGCTGCAA+GGG 0.592187 1.2:-74812796 None:intergenic
TATCTGCTCTAGCAGCTGCA+AGG 0.592633 1.2:-74812797 None:intergenic
CTTACCAGACATGGATGAGA+CGG 0.598118 1.2:-74814976 None:intergenic
CATCCATGTCTGGTAAGAGA+AGG 0.598795 1.2:+74814982 MS.gene34115:CDS
TTACCAGACATGGATGAGAC+GGG 0.611020 1.2:-74814975 None:intergenic
AGAGCAAGGAAGTTAGATCA+GGG 0.613858 1.2:+74812980 MS.gene34115:CDS
GAAGCTGCATCTAGGAAAAG+GGG 0.615335 1.2:+74814816 MS.gene34115:CDS
GTGAGTATGTGATCATCAGT+GGG 0.620162 1.2:+74814165 MS.gene34115:CDS
CCTTATAATATATGGTGCGG+AGG 0.625854 1.2:+74813478 MS.gene34115:CDS
GCTCCCTGTGACCAAGATGA+CGG 0.632091 1.2:-74815077 None:intergenic
ATGCCTTATAATATATGGTG+CGG 0.650909 1.2:+74813475 MS.gene34115:CDS
CTGGAAGCAGTCGAATCCCA+AGG 0.652032 1.2:-74814839 None:intergenic
AAACCGTCATCTTGGTCACA+GGG 0.655559 1.2:+74815074 MS.gene34115:CDS
TGTGAGTATGTGATCATCAG+TGG 0.657354 1.2:+74814164 MS.gene34115:CDS
TGGCTTGGATCCCATTCTGG+AGG 0.660594 1.2:-74812831 None:intergenic
CTTCCTCCTGGTGTTCAAGG+CGG 0.672392 1.2:-74814565 None:intergenic
TTACCGCCTTGAACACCAGG+AGG 0.712713 1.2:+74814562 MS.gene34115:CDS
TGGGAATTACTACTCTACGA+AGG 0.715974 1.2:+74813555 MS.gene34115:CDS
TGAGTATGTGATCATCAGTG+GGG 0.814262 1.2:+74814166 MS.gene34115:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTCATTTTTTTAAACAA+AGG + chr1.2:74813636-74813655 MS.gene34115:intron 10.0%
!! ATTAGATAATATGGAATAAA+AGG - chr1.2:74813434-74813453 None:intergenic 15.0%
!!! TATATGTACATATATTGATT+TGG + chr1.2:74814296-74814315 MS.gene34115:intron 15.0%
!!! TTAAATTCTAGTTTTGATTA+TGG + chr1.2:74812088-74812107 MS.gene34115:intron 15.0%
!! ACACTTGAAAATAATATGTA+AGG - chr1.2:74813866-74813885 None:intergenic 20.0%
!! AGATTATATTGCTTGATTAT+GGG + chr1.2:74812431-74812450 MS.gene34115:intron 20.0%
!! AGATTTGAAAAAAAAGAAAC+AGG + chr1.2:74814586-74814605 MS.gene34115:CDS 20.0%
!! CATCAAATTTATCAGAATTA+GGG + chr1.2:74812012-74812031 MS.gene34115:intron 20.0%
!! TAGATTATATTGCTTGATTA+TGG + chr1.2:74812430-74812449 MS.gene34115:intron 20.0%
!!! AAAAGCATTAAACTTGTTAA+AGG - chr1.2:74814425-74814444 None:intergenic 20.0%
!!! AAAGCATTAAACTTGTTAAA+GGG - chr1.2:74814424-74814443 None:intergenic 20.0%
!!! AAGTGTTTAATTTCTATTGT+CGG + chr1.2:74812640-74812659 MS.gene34115:intron 20.0%
!!! ATCATAATGGATCATTAAAT+TGG - chr1.2:74813255-74813274 None:intergenic 20.0%
!!! ATCTTTTAAAACCATGTATT+GGG - chr1.2:74812411-74812430 None:intergenic 20.0%
!!! ATTTTATAAGTTATACGACA+TGG + chr1.2:74812309-74812328 MS.gene34115:intron 20.0%
!!! CATATTTTTTTTTCTTCTTG+TGG - chr1.2:74812693-74812712 None:intergenic 20.0%
!!! TATCTTTTAAAACCATGTAT+TGG - chr1.2:74812412-74812431 None:intergenic 20.0%
!!! TTTTAAATCCATTTTTCCTA+TGG - chr1.2:74812268-74812287 None:intergenic 20.0%
! AAGTTGAAAAAAGTTTGTCA+TGG - chr1.2:74813770-74813789 None:intergenic 25.0%
! AATCACTATGAGACTATAAT+TGG - chr1.2:74813949-74813968 None:intergenic 25.0%
! AATCACTATTAGACTATAAC+TGG - chr1.2:74813833-74813852 None:intergenic 25.0%
! ACATGTAATATGAGTACTTA+TGG + chr1.2:74812605-74812624 MS.gene34115:intron 25.0%
! AGAATGGTCATTAGATAATA+TGG - chr1.2:74813443-74813462 None:intergenic 25.0%
! ATATGCTAAATGAAACAATG+TGG + chr1.2:74813133-74813152 MS.gene34115:intron 25.0%
! ATATTACAGTATTTCACCAT+AGG + chr1.2:74812249-74812268 MS.gene34115:intron 25.0%
! ATTTATCAGAATTAGGGTTA+AGG + chr1.2:74812018-74812037 MS.gene34115:intron 25.0%
! CAAATGCAAGTTAAGTTTAT+TGG - chr1.2:74812758-74812777 None:intergenic 25.0%
! CTAGTAAGTTTGACAAAAAT+AGG + chr1.2:74814904-74814923 MS.gene34115:CDS 25.0%
! GATGATATATTCTTCATGAA+TGG + chr1.2:74812053-74812072 MS.gene34115:intron 25.0%
! GATTATATTGCTTGATTATG+GGG + chr1.2:74812432-74812451 MS.gene34115:intron 25.0%
! GCATCAAATTTATCAGAATT+AGG + chr1.2:74812011-74812030 MS.gene34115:intron 25.0%
! TAAAACTGATACACAAGTAT+GGG + chr1.2:74812283-74812302 MS.gene34115:intron 25.0%
! TAAAATAAAATAGCCCAGAT+TGG - chr1.2:74813408-74813427 None:intergenic 25.0%
! TAAGTTTGACAAAAATAGGA+AGG + chr1.2:74814908-74814927 MS.gene34115:CDS 25.0%
! TAATCATTAACGTGTTTATC+TGG + chr1.2:74814062-74814081 MS.gene34115:intron 25.0%
! TAATGAGTTATCAAGACAAA+TGG - chr1.2:74813072-74813091 None:intergenic 25.0%
! TACAGAGAATAAAGGATTTA+CGG - chr1.2:74813113-74813132 None:intergenic 25.0%
! TAGCATATTACAGAGAATAA+AGG - chr1.2:74813121-74813140 None:intergenic 25.0%
! TTAAAACTGATACACAAGTA+TGG + chr1.2:74812282-74812301 MS.gene34115:intron 25.0%
! TTACAACAACAAAGAATTCA+TGG + chr1.2:74812350-74812369 MS.gene34115:intron 25.0%
! TTGAGATGCCTTATAATATA+TGG + chr1.2:74813470-74813489 MS.gene34115:CDS 25.0%
!! GAAGCATCTAATGTTTATTA+TGG + chr1.2:74813596-74813615 MS.gene34115:intron 25.0%
!! TAACTTGTATGTATTTGATG+TGG + chr1.2:74812713-74812732 MS.gene34115:intron 25.0%
!!! ATTTTTTTTTCTTCTTGTGG+TGG - chr1.2:74812690-74812709 None:intergenic 25.0%
!!! CTTTTGACTCTAAGAAAATA+GGG - chr1.2:74814778-74814797 None:intergenic 25.0%
!!! TAGTTTTGATTATGGTTTGA+TGG + chr1.2:74812096-74812115 MS.gene34115:intron 25.0%
!!! TATCAAGACAAATGGATTAA+TGG - chr1.2:74813064-74813083 None:intergenic 25.0%
!!! TCATTTTTTTAAACAAAGGC+AGG + chr1.2:74813640-74813659 MS.gene34115:intron 25.0%
!!! TCTTTTAAAACCATGTATTG+GGG - chr1.2:74812410-74812429 None:intergenic 25.0%
!!! TCTTTTGACTCTAAGAAAAT+AGG - chr1.2:74814779-74814798 None:intergenic 25.0%
AAAACTGATACACAAGTATG+GGG + chr1.2:74812284-74812303 MS.gene34115:intron 30.0%
AAAATTTGTGTTACAGAGAG+AGG + chr1.2:74814521-74814540 MS.gene34115:intron 30.0%
AAATTTGTGTTACAGAGAGA+GGG + chr1.2:74814522-74814541 MS.gene34115:intron 30.0%
AACTCATTTCTGACTATTCT+AGG - chr1.2:74813176-74813195 None:intergenic 30.0%
AATGATCCATTATGATCGAA+AGG + chr1.2:74813259-74813278 MS.gene34115:intron 30.0%
ATGAGTACTTATGGATATCT+TGG + chr1.2:74812614-74812633 MS.gene34115:intron 30.0%
ATGATCCATTATGATCGAAA+GGG + chr1.2:74813260-74813279 MS.gene34115:intron 30.0%
ATGCAATTCTATGATTGCAA+AGG + chr1.2:74813501-74813520 MS.gene34115:CDS 30.0%
ATGCCCTAAATAAAAATCTC+CGG + chr1.2:74814666-74814685 MS.gene34115:CDS 30.0%
ATGCCTTATAATATATGGTG+CGG + chr1.2:74813475-74813494 MS.gene34115:CDS 30.0%
CAAGTAACATACTCTAAGTT+TGG - chr1.2:74814693-74814712 None:intergenic 30.0%
GTATTTCACCATAGGAAAAA+TGG + chr1.2:74812257-74812276 MS.gene34115:intron 30.0%
TATCTAATGACCATTCTTTC+AGG + chr1.2:74813446-74813465 MS.gene34115:intron 30.0%
TCTAAGAAAATAGGGAAAAG+GGG - chr1.2:74814770-74814789 None:intergenic 30.0%
TGCAATTCTATGATTGCAAA+GGG + chr1.2:74813502-74813521 MS.gene34115:CDS 30.0%
TTAATGCACTGCATTATCTT+GGG + chr1.2:74814001-74814020 MS.gene34115:intron 30.0%
TTGAACAGCACTATTTAGAT+TGG - chr1.2:74814028-74814047 None:intergenic 30.0%
! ACTCTAAGAAAATAGGGAAA+AGG - chr1.2:74814772-74814791 None:intergenic 30.0%
! ATCAGGGTATCTTGATTATA+AGG + chr1.2:74812996-74813015 MS.gene34115:CDS 30.0%
! ATTGAAGGAAAGAGCTTTTA+TGG - chr1.2:74812386-74812405 None:intergenic 30.0%
! CTAGTAGATTTTAAATGCCT+GGG + chr1.2:74812527-74812546 MS.gene34115:intron 30.0%
! CTCTAAGAAAATAGGGAAAA+GGG - chr1.2:74814771-74814790 None:intergenic 30.0%
! GCAAGATTTTAAACTGTCAT+TGG - chr1.2:74813732-74813751 None:intergenic 30.0%
! TCTAGTAGATTTTAAATGCC+TGG + chr1.2:74812526-74812545 MS.gene34115:intron 30.0%
! TTGAAGGAAAGAGCTTTTAT+GGG - chr1.2:74812385-74812404 None:intergenic 30.0%
! TTGATGGATGATCAAATTGA+TGG + chr1.2:74812112-74812131 MS.gene34115:intron 30.0%
!! ATGTTTTATGTTGATTGTGG+AGG + chr1.2:74812135-74812154 MS.gene34115:intron 30.0%
!! TGGATGTTTTATGTTGATTG+TGG + chr1.2:74812132-74812151 MS.gene34115:intron 30.0%
!!! TTTTTTTCAAATCTTCCTCC+TGG - chr1.2:74814580-74814599 None:intergenic 30.0%
AAAATAGCCCAGATTGGAAA+AGG - chr1.2:74813402-74813421 None:intergenic 35.0%
AAGTTTGCCTTTGAACCTTT+GGG + chr1.2:74814370-74814389 MS.gene34115:intron 35.0%
AATCCATAGAAAACAGCTGT+TGG - chr1.2:74814397-74814416 None:intergenic 35.0%
ACAAAAATAGGAAGGACAAG+CGG + chr1.2:74814916-74814935 MS.gene34115:CDS 35.0%
ACACTATATTTCCTCCTTTC+AGG + chr1.2:74812916-74812935 MS.gene34115:intron 35.0%
ACTATCCCTTTCGATCATAA+TGG - chr1.2:74813268-74813287 None:intergenic 35.0%
AGGGATAGTCTACTTTATGT+AGG + chr1.2:74813279-74813298 MS.gene34115:intron 35.0%
AGGGTTAAGGATCAAATTGA+TGG + chr1.2:74812031-74812050 MS.gene34115:intron 35.0%
ATCACATACTCACAGTTCTT+TGG - chr1.2:74814158-74814177 None:intergenic 35.0%
ATGCGATTGCATCTTTCAAT+TGG + chr1.2:74814346-74814365 MS.gene34115:intron 35.0%
CACTATATTTCCTCCTTTCA+GGG + chr1.2:74812917-74812936 MS.gene34115:intron 35.0%
CTAAGAAAATAGGGAAAAGG+GGG - chr1.2:74814769-74814788 None:intergenic 35.0%
GAGAATAAAGGATTTACGGT+AGG - chr1.2:74813109-74813128 None:intergenic 35.0%
GGATAGTCTACTTTATGTAG+GGG + chr1.2:74813281-74813300 MS.gene34115:intron 35.0%
GGGATAGTCTACTTTATGTA+GGG + chr1.2:74813280-74813299 MS.gene34115:intron 35.0%
GTTAATGCACTGCATTATCT+TGG + chr1.2:74814000-74814019 MS.gene34115:intron 35.0%
GTTCTTTGGATCAGTTTGAA+TGG - chr1.2:74814144-74814163 None:intergenic 35.0%
TGCCCTAAATAAAAATCTCC+GGG + chr1.2:74814667-74814686 MS.gene34115:CDS 35.0%
TTGTTGTACGCAAATATACC+TGG - chr1.2:74812854-74812873 None:intergenic 35.0%
! ACTTTTACTTTCCTCCAGAA+TGG + chr1.2:74812820-74812839 MS.gene34115:CDS 35.0%
! CTTTTACTTTCCTCCAGAAT+GGG + chr1.2:74812821-74812840 MS.gene34115:CDS 35.0%
! TAGATTTTAAATGCCTGGGT+GGG + chr1.2:74812531-74812550 MS.gene34115:intron 35.0%
! TAGTAACTGATTCACTATCG+TGG + chr1.2:74814474-74814493 MS.gene34115:intron 35.0%
!! AACTGAGGATTTTGATGTTG+AGG + chr1.2:74814199-74814218 MS.gene34115:CDS 35.0%
!! GAGAGTGTTGAAGAATTTGA+CGG + chr1.2:74812468-74812487 MS.gene34115:intron 35.0%
AACATACTCTAAGTTTGGCC+CGG - chr1.2:74814688-74814707 None:intergenic 40.0%
AAGAAGCTGCATCTAGGAAA+AGG + chr1.2:74814814-74814833 MS.gene34115:CDS 40.0%
AATCGCATGTCTCAAACTAC+TGG - chr1.2:74814334-74814353 None:intergenic 40.0%
AATGCAGAGAAGAAGCAAGT+TGG + chr1.2:74813535-74813554 MS.gene34115:CDS 40.0%
AATGTCTGATGCCAGACATT+CGG + chr1.2:74814637-74814656 MS.gene34115:CDS 40.0%
AGAAGCTGCATCTAGGAAAA+GGG + chr1.2:74814815-74814834 MS.gene34115:CDS 40.0%
AGAGCAAGGAAGTTAGATCA+GGG + chr1.2:74812980-74812999 MS.gene34115:CDS 40.0%
ATCGCATGTCTCAAACTACT+GGG - chr1.2:74814333-74814352 None:intergenic 40.0%
ATGCAGAGAAGAAGCAAGTT+GGG + chr1.2:74813536-74813555 MS.gene34115:CDS 40.0%
ATTCGTGGGATGTGTAATTC+AGG + chr1.2:74812170-74812189 MS.gene34115:intron 40.0%
CAAAAATAGGAAGGACAAGC+GGG + chr1.2:74814917-74814936 MS.gene34115:CDS 40.0%
CAAGTTTGCCTTTGAACCTT+TGG + chr1.2:74814369-74814388 MS.gene34115:intron 40.0%
CCACATAGAGACAAAGATCA+GGG - chr1.2:74812667-74812686 None:intergenic 40.0%
CCTCCGCACCATATATTATA+AGG - chr1.2:74813481-74813500 None:intergenic 40.0%
CCTTATAATATATGGTGCGG+AGG + chr1.2:74813478-74813497 MS.gene34115:CDS 40.0%
CTACTTACTGGCGTGTTATA+TGG + chr1.2:74813306-74813325 MS.gene34115:intron 40.0%
GCATCTCAAACCTGAAAGAA+TGG - chr1.2:74813459-74813478 None:intergenic 40.0%
GGTAGTAATACACACACTCA+CGG + chr1.2:74812489-74812508 MS.gene34115:intron 40.0%
GGTTCTCTGAACAAGTTTCA+TGG + chr1.2:74812938-74812957 MS.gene34115:CDS 40.0%
GTGAGTATGTGATCATCAGT+GGG + chr1.2:74814165-74814184 MS.gene34115:CDS 40.0%
TATCTGGATACGTGCAGATA+TGG + chr1.2:74814078-74814097 MS.gene34115:intron 40.0%
TGAGTATGTGATCATCAGTG+GGG + chr1.2:74814166-74814185 MS.gene34115:CDS 40.0%
TGGGAATTACTACTCTACGA+AGG + chr1.2:74813555-74813574 MS.gene34115:CDS 40.0%
TGTGAGTATGTGATCATCAG+TGG + chr1.2:74814164-74814183 MS.gene34115:CDS 40.0%
TTAAGCACAGTTGCAATGCT+AGG - chr1.2:74814451-74814470 None:intergenic 40.0%
! ACAAGTTTGTTCACATGAGC+AGG - chr1.2:74813676-74813695 None:intergenic 40.0%
! AGATTTTAAATGCCTGGGTG+GGG + chr1.2:74812532-74812551 MS.gene34115:intron 40.0%
! GTAGATTTTAAATGCCTGGG+TGG + chr1.2:74812530-74812549 MS.gene34115:intron 40.0%
!! AGAGCTTTTATGGGTTGTGA+TGG - chr1.2:74812376-74812395 None:intergenic 40.0%
!! GGCCCGGAGATTTTTATTTA+GGG - chr1.2:74814672-74814691 None:intergenic 40.0%
!! TGGCCCGGAGATTTTTATTT+AGG - chr1.2:74814673-74814692 None:intergenic 40.0%
AAAACAGCTGTTGGACCCAA+AGG - chr1.2:74814388-74814407 None:intergenic 45.0%
AAACCGTCATCTTGGTCACA+GGG + chr1.2:74815074-74815093 MS.gene34115:CDS 45.0%
AATCTTCCTCCTGGTGTTCA+AGG - chr1.2:74814571-74814590 None:intergenic 45.0%
AGGAGCTTGGAGTAAATTCG+TGG + chr1.2:74812155-74812174 MS.gene34115:intron 45.0%
ATAGCCCAGATTGGAAAAGG+AGG - chr1.2:74813399-74813418 None:intergenic 45.0%
CATCCATGTCTGGTAAGAGA+AGG + chr1.2:74814982-74815001 MS.gene34115:CDS 45.0%
CCCTGATCTTTGTCTCTATG+TGG + chr1.2:74812664-74812683 MS.gene34115:intron 45.0%
CTGAAGAAGAAGCTGCATCT+AGG + chr1.2:74814808-74814827 MS.gene34115:CDS 45.0%
CTTACCAGACATGGATGAGA+CGG - chr1.2:74814979-74814998 None:intergenic 45.0%
CTTGTTCAGAGAACCCTGAA+AGG - chr1.2:74812933-74812952 None:intergenic 45.0%
GAAGCTGCATCTAGGAAAAG+GGG + chr1.2:74814816-74814835 MS.gene34115:CDS 45.0%
GAGAGCAAGGAAGTTAGATC+AGG + chr1.2:74812979-74812998 MS.gene34115:CDS 45.0%
GCCACATAGAGACAAAGATC+AGG - chr1.2:74812668-74812687 None:intergenic 45.0%
GCTTCTTCTCTGCATTGAAC+CGG - chr1.2:74813531-74813550 None:intergenic 45.0%
GGAGCTTGGAGTAAATTCGT+GGG + chr1.2:74812156-74812175 MS.gene34115:intron 45.0%
GTACGCAAATATACCTGGCT+TGG - chr1.2:74812849-74812868 None:intergenic 45.0%
GTTCTGTCAAGCAGGCAAAA+GGG + chr1.2:74815101-74815120 MS.gene34115:CDS 45.0%
GTTTATACCCTCCAGCCAAA+AGG - chr1.2:74815058-74815077 None:intergenic 45.0%
TAAACCGTCATCTTGGTCAC+AGG + chr1.2:74815073-74815092 MS.gene34115:CDS 45.0%
TCCTTCAATGCCCCAATACA+TGG + chr1.2:74812397-74812416 MS.gene34115:intron 45.0%
TCGCATGTCTCAAACTACTG+GGG - chr1.2:74814332-74814351 None:intergenic 45.0%
TCTACAGCATGCAGCTTTCA+TGG - chr1.2:74814111-74814130 None:intergenic 45.0%
TGGGGCTCAGAAAAAAACTG+AGG + chr1.2:74814184-74814203 MS.gene34115:CDS 45.0%
TGGTGTTCAAGGCGGTAAAA+TGG - chr1.2:74814560-74814579 None:intergenic 45.0%
TGTTCTGTCAAGCAGGCAAA+AGG + chr1.2:74815100-74815119 MS.gene34115:CDS 45.0%
TGTTGGACCCAAAGGTTCAA+AGG - chr1.2:74814380-74814399 None:intergenic 45.0%
TTACCAGACATGGATGAGAC+GGG - chr1.2:74814978-74814997 None:intergenic 45.0%
TTGCTTGATTATGGGGTGAG+TGG + chr1.2:74812439-74812458 MS.gene34115:intron 45.0%
! ATGTTGATTGTGGAGGAGCT+TGG + chr1.2:74812142-74812161 MS.gene34115:intron 45.0%
! ATTTTACCGCCTTGAACACC+AGG + chr1.2:74814559-74814578 MS.gene34115:CDS 45.0%
! GAGGGTATAAACCGTCATCT+TGG + chr1.2:74815066-74815085 MS.gene34115:CDS 45.0%
! TTCGAGTTACCTGCTGATGA+AGG + chr1.2:74814233-74814252 MS.gene34115:CDS 45.0%
!! ACCATGTATTGGGGCATTGA+AGG - chr1.2:74812401-74812420 None:intergenic 45.0%
!! CTATGATTGCAAAGGGTGTC+CGG + chr1.2:74813509-74813528 MS.gene34115:CDS 45.0%
!! GGTCCAACAGCTGTTTTCTA+TGG + chr1.2:74814391-74814410 MS.gene34115:intron 45.0%
!! TATGTAGGGGTGCTACTTAC+TGG + chr1.2:74813294-74813313 MS.gene34115:intron 45.0%
AATGCTGCTCCCATATTCCC+TGG + chr1.2:74814948-74814967 MS.gene34115:CDS 50.0%
ACGGGCAATCCAGGGAATAT+GGG - chr1.2:74814960-74814979 None:intergenic 50.0%
ATCTGCTCTAGCAGCTGCAA+GGG - chr1.2:74812799-74812818 None:intergenic 50.0%
ATGCCTTGAGAGAGAGAGCA+AGG + chr1.2:74812966-74812985 MS.gene34115:CDS 50.0%
CAGCCTTCTCTTACCAGACA+TGG - chr1.2:74814988-74815007 None:intergenic 50.0%
CATCTAGGAAAAGGGGCCTT+GGG + chr1.2:74814823-74814842 MS.gene34115:CDS 50.0%
CATGTCTGGTAAGAGAAGGC+TGG + chr1.2:74814986-74815005 MS.gene34115:CDS 50.0%
CTTCCTTGCTCTCTCTCTCA+AGG - chr1.2:74812972-74812991 None:intergenic 50.0%
CTTGAAAGAGCTGAACCAGC+TGG + chr1.2:74813373-74813392 MS.gene34115:intron 50.0%
GAAAGCTGCATGCTGTAGAC+AGG + chr1.2:74814112-74814131 MS.gene34115:CDS 50.0%
GAACTTCACTTTCGCTGCTG+CGG - chr1.2:74814883-74814902 None:intergenic 50.0%
GTTCAGAGAACCCTGAAAGG+AGG - chr1.2:74812930-74812949 None:intergenic 50.0%
TATCTGCTCTAGCAGCTGCA+AGG - chr1.2:74812800-74812819 None:intergenic 50.0%
TCATGCACACCTTCATCAGC+AGG - chr1.2:74814245-74814264 None:intergenic 50.0%
TTTAAATGCCTGGGTGGGGA+GGG + chr1.2:74812536-74812555 MS.gene34115:intron 50.0%
! CTGGCCTCCTTTTCCAATCT+GGG + chr1.2:74813392-74813411 MS.gene34115:intron 50.0%
! TTTTAAATGCCTGGGTGGGG+AGG + chr1.2:74812535-74812554 MS.gene34115:intron 50.0%
!! AAGCGCAGCATCTAGCCTTT+TGG + chr1.2:74815040-74815059 MS.gene34115:CDS 50.0%
!! CATCTAGCCTTTTGGCTGGA+GGG + chr1.2:74815048-74815067 MS.gene34115:CDS 50.0%
!! GCAGCATCTTGTTCTGAAGC+TGG - chr1.2:74814861-74814880 None:intergenic 50.0%
AGGGAGCTGTTCTGTCAAGC+AGG + chr1.2:74815093-74815112 MS.gene34115:CDS 55.0%
ATGGATGAGACGGGCAATCC+AGG - chr1.2:74814969-74814988 None:intergenic 55.0%
ATTATGGGGTGAGTGGCGCT+AGG + chr1.2:74812446-74812465 MS.gene34115:intron 55.0%
CTGGAAGCAGTCGAATCCCA+AGG - chr1.2:74814842-74814861 None:intergenic 55.0%
CTTCCTCCTGGTGTTCAAGG+CGG - chr1.2:74814568-74814587 None:intergenic 55.0%
GACGGGCAATCCAGGGAATA+TGG - chr1.2:74814961-74814980 None:intergenic 55.0%
GATTGGAAAAGGAGGCCAGC+TGG - chr1.2:74813391-74813410 None:intergenic 55.0%
GCAGCTACTAAGCGACAGTG+TGG + chr1.2:74813038-74813057 MS.gene34115:intron 55.0%
GCATCTAGGAAAAGGGGCCT+TGG + chr1.2:74814822-74814841 MS.gene34115:CDS 55.0%
GCTCCCTGTGACCAAGATGA+CGG - chr1.2:74815080-74815099 None:intergenic 55.0%
GGCATAGTCGTCCGAATGTC+TGG - chr1.2:74814651-74814670 None:intergenic 55.0%
GTCTGGCATCAGACATTCGC+TGG - chr1.2:74814634-74814653 None:intergenic 55.0%
TCCAGAATGGGATCCAAGCC+AGG + chr1.2:74812833-74812852 MS.gene34115:CDS 55.0%
TGGATGAGACGGGCAATCCA+GGG - chr1.2:74814968-74814987 None:intergenic 55.0%
TTACCGCCTTGAACACCAGG+AGG + chr1.2:74814562-74814581 MS.gene34115:CDS 55.0%
TTGCCCGTCTCATCCATGTC+TGG + chr1.2:74814972-74814991 MS.gene34115:CDS 55.0%
! TGGCTTGGATCCCATTCTGG+AGG - chr1.2:74812834-74812853 None:intergenic 55.0%
!! ACCTGGCTTGGATCCCATTC+TGG - chr1.2:74812837-74812856 None:intergenic 55.0%
!! GCAGCATCTAGCCTTTTGGC+TGG + chr1.2:74815044-74815063 MS.gene34115:CDS 55.0%
!! GCATCTAGCCTTTTGGCTGG+AGG + chr1.2:74815047-74815066 MS.gene34115:CDS 55.0%
!! GCTGGCCTCCTTTTCCAATC+TGG + chr1.2:74813391-74813410 MS.gene34115:intron 55.0%
CGCTGGAGACGCACAAGCAC+TGG - chr1.2:74814617-74814636 None:intergenic 65.0%
GCCTGGGTGGGGAGGGAGTA+GGG + chr1.2:74812543-74812562 MS.gene34115:intron 70.0%
TCCCTACTCCCTCCCCACCC+AGG - chr1.2:74812547-74812566 None:intergenic 70.0%
TGCCTGGGTGGGGAGGGAGT+AGG + chr1.2:74812542-74812561 MS.gene34115:intron 70.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 74811966 74815148 74811966 ID=MS.gene34115
chr1.2 mRNA 74811966 74815148 74811966 ID=MS.gene34115.t1;Parent=MS.gene34115
chr1.2 exon 74811966 74811968 74811966 ID=MS.gene34115.t1.exon1;Parent=MS.gene34115.t1
chr1.2 CDS 74811966 74811968 74811966 ID=cds.MS.gene34115.t1;Parent=MS.gene34115.t1
chr1.2 exon 74812792 74812854 74812792 ID=MS.gene34115.t1.exon2;Parent=MS.gene34115.t1
chr1.2 CDS 74812792 74812854 74812792 ID=cds.MS.gene34115.t1;Parent=MS.gene34115.t1
chr1.2 exon 74812938 74813017 74812938 ID=MS.gene34115.t1.exon3;Parent=MS.gene34115.t1
chr1.2 CDS 74812938 74813017 74812938 ID=cds.MS.gene34115.t1;Parent=MS.gene34115.t1
chr1.2 exon 74813468 74813576 74813468 ID=MS.gene34115.t1.exon4;Parent=MS.gene34115.t1
chr1.2 CDS 74813468 74813576 74813468 ID=cds.MS.gene34115.t1;Parent=MS.gene34115.t1
chr1.2 exon 74814095 74814254 74814095 ID=MS.gene34115.t1.exon5;Parent=MS.gene34115.t1
chr1.2 CDS 74814095 74814254 74814095 ID=cds.MS.gene34115.t1;Parent=MS.gene34115.t1
chr1.2 exon 74814537 74814700 74814537 ID=MS.gene34115.t1.exon6;Parent=MS.gene34115.t1
chr1.2 CDS 74814537 74814700 74814537 ID=cds.MS.gene34115.t1;Parent=MS.gene34115.t1
chr1.2 exon 74814789 74815148 74814789 ID=MS.gene34115.t1.exon7;Parent=MS.gene34115.t1
chr1.2 CDS 74814789 74815148 74814789 ID=cds.MS.gene34115.t1;Parent=MS.gene34115.t1
Gene Sequence

>MS.gene34115

ATGGTGCGTATTCTCTTTCTCTTTTTAATTTTTTTTCGTTTTGTTGCATCAAATTTATCAGAATTAGGGTTAAGGATCAAATTGATGGATGATATATTCTTCATGAATGGACTCAATTAATGTTAAATTCTAGTTTTGATTATGGTTTGATGGATGATCAAATTGATGGATGTTTTATGTTGATTGTGGAGGAGCTTGGAGTAAATTCGTGGGATGTGTAATTCAGGAAAGCTGAATGTTTTGCAGAATAAAAAATTTAGAATATCGAATACGTAGAATTAGAATATTACAGTATTTCACCATAGGAAAAATGGATTTAAAACTGATACACAAGTATGGGGAAATTTTATAAGTTATACGACATGGCAGTATTGCATATAAATTTTACAACAACAAAGAATTCATGGCCATCACAACCCATAAAAGCTCTTTCCTTCAATGCCCCAATACATGGTTTTAAAAGATAGATTATATTGCTTGATTATGGGGTGAGTGGCGCTAGGAGAGTGTTGAAGAATTTGACGGTAGTAATACACACACTCACGGCATCAACATGTCATTCTAGTAGATTTTAAATGCCTGGGTGGGGAGGGAGTAGGGAATGCAAATTATTAAAATGCAATTTTGTACATGTTTGATACATGTAATATGAGTACTTATGGATATCTTGGCTAAAGTGTTTAATTTCTATTGTCGGACCCTGATCTTTGTCTCTATGTGGCCACCACAAGAAGAAAAAAAAATATGTAACTTGTATGTATTTGATGTGGTATTTGTTACTTTATTTTTCCAATAAACTTAACTTGCATTTGTTGTATTTCTACAGTCGTCCCTTGCAGCTGCTAGAGCAGATAACTTTTACTTTCCTCCAGAATGGGATCCAAGCCAGGTATATTTGCGTACAACAAGTCTTTTCTGTTAAATTATTTACTATTTAGTGCAGATATCTTACACTATATTTCCTCCTTTCAGGGTTCTCTGAACAAGTTTCATGGTCAACATGCCTTGAGAGAGAGAGCAAGGAAGTTAGATCAGGGTATCTTGATTATAAGGTAAGTGATTCATTTTAACAGCAGCTACTAAGCGACAGTGTGGCCATTAATCCATTTGTCTTGATAACTCATTATGAAAGTTCAGTTTCCTACCGTAAATCCTTTATTCTCTGTAATATGCTAAATGAAACAATGTGGATGATGTTCATTTTGTACCTAGAATAGTCAGAAATGAGTTGAAGCTATATCATATCTAAAAAGTATTTGATATGTTTCATGATTTATGAATTCTGACCAATTTAATGATCCATTATGATCGAAAGGGATAGTCTACTTTATGTAGGGGTGCTACTTACTGGCGTGTTATATGGTTTGTGTATTTCACTGCATGCTTTAATTTAGCTTCGTGTGTACACTTGAAAGAGCTGAACCAGCTGGCCTCCTTTTCCAATCTGGGCTATTTTATTTTATTACCTTTTATTCCATATTATCTAATGACCATTCTTTCAGGTTTGAGATGCCTTATAATATATGGTGCGGAGGATGCAATTCTATGATTGCAAAGGGTGTCCGGTTCAATGCAGAGAAGAAGCAAGTTGGGAATTACTACTCTACGAAGGTATGTTGAAGTAGAGTGCGAAGCATCTAATGTTTATTATGGCTACAGCGACAAATTATTTTTTCATTTTTTTAAACAAAGGCAGGTATAGAAGCACCTGCTCATGTGAACAAACTTGTTTAATATATTTGTATGCAGTAATTAATTTTTAACCAATGACAGTTTAAAATCTTGCAATATTAATAACTTACCATGACAAACTTTTTTCAACTTTCTGAAAAAACTTGCTTCAAATTTAAAATTTAAAACACAACCAGTTATAGTCTAATAGTGATTTATATACATTCCTTACATATTATTTTCAAGTGTTAATGCACTGTTTTCGACTTTCTGAAAAAACTTGCTTCAAATTTAAAATTTCAAACACAACCAATTATAGTCTCATAGTGATTTATATACATTCCTTACATATTATTTTCAAGTGTTAATGCACTGCATTATCTTGGGACCAATCTAAATAGTGCTGTTCAATGTGTCTTGTTTACTAATCATTAACGTGTTTATCTGGATACGTGCAGATATGGAGCTTTACCATGAAAGCTGCATGCTGTAGACAGGAGATCACCATTCAAACTGATCCAAAGAACTGTGAGTATGTGATCATCAGTGGGGCTCAGAAAAAAACTGAGGATTTTGATGTTGAGGATGCAGAAACTTTCGAGTTACCTGCTGATGAAGGTGTGCATGATGCAATTTTTTTTCTTTTTCTTTCTGTTATTTATATGTACATATATTGATTTGGTGCACAGTTACCCCAGTAGTTTGAGACATGCGATTGCATCTTTCAATTGGCAAGTTTGCCTTTGAACCTTTGGGTCCAACAGCTGTTTTCTATGGATTATGTCCCTTTAACAAGTTTAATGCTTTTTTACCTAGCATTGCAACTGTGCTTAAGTGTAGTAACTGATTCACTATCGTGGATGTTAGCTAACTTCATTAATTTTAAAATTTGTGTTACAGAGAGAGGGAAGCTTGCTGATCCATTTTACCGCCTTGAACACCAGGAGGAAGATTTGAAAAAAAAGAAACAGGCTGAACCAGTGCTTGTGCGTCTCCAGCGAATGTCTGATGCCAGACATTCGGACGACTATGCCCTAAATAAAAATCTCCGGGCCAAACTTAGAGTATGTTACTTGCTCATGTAGTTTGATCTTGTTTATTTATTTGTTCAATTTTGCTTTAATATTTTCCCCCTTTTCCCTATTTTCTTAGAGTCAAAAGAAAAGAGTTGCTGAAGAAGAAGCTGCATCTAGGAAAAGGGGCCTTGGGATTCGACTGCTTCCAGCTTCAGAACAAGATGCTGCCGCAGCAGCGAAAGTGAAGTTCTCTAGTAAGTTTGACAAAAATAGGAAGGACAAGCGGGCATTGATCAATGCTGCTCCCATATTCCCTGGATTGCCCGTCTCATCCATGTCTGGTAAGAGAAGGCTGGAGCTAGAGTCTAAAAGAAGAAAAATTTCTGCAAGCGCAGCATCTAGCCTTTTGGCTGGAGGGTATAAACCGTCATCTTGGTCACAGGGAGCTGTTCTGTCAAGCAGGCAAAAGGGAGCTTCCATGAATGCAAGACACTAG

Protein sequence

>MS.gene34115.t1

MSSLAAARADNFYFPPEWDPSQGSLNKFHGQHALRERARKLDQGILIIRFEMPYNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKAACCRQEITIQTDPKNCEYVIISGAQKKTEDFDVEDAETFELPADEERGKLADPFYRLEHQEEDLKKKKQAEPVLVRLQRMSDARHSDDYALNKNLRAKLRSQKKRVAEEEAASRKRGLGIRLLPASEQDAAAAAKVKFSSKFDKNRKDKRALINAAPIFPGLPVSSMSGKRRLELESKRRKISASAASSLLAGGYKPSSWSQGAVLSSRQKGASMNARH