Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene34115.t1 | XP_003591834.1 | 97.1 | 312 | 9 | 0 | 1 | 312 | 1 | 312 | 3.20E-166 | 594.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene34115.t1 | P13994 | 48.7 | 261 | 125 | 5 | 11 | 263 | 8 | 267 | 7.9e-57 | 222.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene34115.t1 | G7I4X2 | 97.1 | 312 | 9 | 0 | 1 | 312 | 1 | 312 | 2.3e-166 | 594.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049283 | MS.gene34115 | 0.807811 | 4.21E-50 | -1.69E-46 |
MS.gene04991 | MS.gene34115 | -0.823978 | 1.04E-53 | -1.69E-46 |
MS.gene050654 | MS.gene34115 | 0.806944 | 6.43E-50 | -1.69E-46 |
MS.gene051122 | MS.gene34115 | 0.824077 | 9.82E-54 | -1.69E-46 |
MS.gene051184 | MS.gene34115 | 0.818442 | 1.96E-52 | -1.69E-46 |
MS.gene051987 | MS.gene34115 | 0.803589 | 3.24E-49 | -1.69E-46 |
MS.gene052242 | MS.gene34115 | -0.809613 | 1.74E-50 | -1.69E-46 |
MS.gene052954 | MS.gene34115 | 0.805957 | 1.04E-49 | -1.69E-46 |
MS.gene053298 | MS.gene34115 | 0.810531 | 1.10E-50 | -1.69E-46 |
MS.gene053340 | MS.gene34115 | 0.809229 | 2.10E-50 | -1.69E-46 |
MS.gene053963 | MS.gene34115 | 0.825584 | 4.33E-54 | -1.69E-46 |
MS.gene054479 | MS.gene34115 | 0.823075 | 1.68E-53 | -1.69E-46 |
MS.gene054536 | MS.gene34115 | 0.800938 | 1.14E-48 | -1.69E-46 |
MS.gene05469 | MS.gene34115 | 0.803684 | 3.10E-49 | -1.69E-46 |
MS.gene055063 | MS.gene34115 | -0.811717 | 6.09E-51 | -1.69E-46 |
MS.gene056787 | MS.gene34115 | 0.800622 | 1.32E-48 | -1.69E-46 |
MS.gene056849 | MS.gene34115 | 0.856407 | 3.29E-62 | -1.69E-46 |
MS.gene056975 | MS.gene34115 | 0.846336 | 2.32E-59 | -1.69E-46 |
MS.gene057108 | MS.gene34115 | 0.810039 | 1.41E-50 | -1.69E-46 |
MS.gene057109 | MS.gene34115 | 0.8041 | 2.54E-49 | -1.69E-46 |
MS.gene057110 | MS.gene34115 | 0.806797 | 6.91E-50 | -1.69E-46 |
MS.gene057999 | MS.gene34115 | 0.828444 | 8.96E-55 | -1.69E-46 |
MS.gene058429 | MS.gene34115 | 0.800075 | 1.71E-48 | -1.69E-46 |
MS.gene059872 | MS.gene34115 | -0.829064 | 6.34E-55 | -1.69E-46 |
MS.gene060297 | MS.gene34115 | 0.826374 | 2.81E-54 | -1.69E-46 |
MS.gene060840 | MS.gene34115 | 0.814015 | 1.91E-51 | -1.69E-46 |
MS.gene060851 | MS.gene34115 | 0.81082 | 9.53E-51 | -1.69E-46 |
MS.gene060852 | MS.gene34115 | 0.809021 | 2.33E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene34115.t1 | MTR_1g093770 | 97.115 | 312 | 9 | 0 | 1 | 312 | 1 | 312 | 0.0 | 628 |
MS.gene34115.t1 | MTR_2g070740 | 30.000 | 200 | 121 | 5 | 11 | 205 | 8 | 193 | 6.18e-21 | 91.7 |
MS.gene34115.t1 | MTR_8g008730 | 30.000 | 200 | 121 | 5 | 11 | 205 | 8 | 193 | 8.71e-21 | 89.7 |
MS.gene34115.t1 | MTR_8g008730 | 30.000 | 200 | 121 | 5 | 11 | 205 | 8 | 193 | 1.73e-20 | 90.5 |
MS.gene34115.t1 | MTR_3g101280 | 70.370 | 54 | 11 | 1 | 32 | 85 | 51 | 99 | 4.94e-20 | 86.7 |
MS.gene34115.t1 | MTR_1g073720 | 29.000 | 200 | 121 | 6 | 11 | 205 | 8 | 191 | 1.34e-17 | 82.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene34115.t1 | AT1G25682 | 72.990 | 311 | 81 | 2 | 1 | 311 | 1 | 308 | 4.94e-170 | 474 |
MS.gene34115.t1 | AT1G25682 | 72.990 | 311 | 81 | 2 | 1 | 311 | 1 | 308 | 4.94e-170 | 474 |
MS.gene34115.t1 | AT1G25988 | 75.641 | 78 | 19 | 0 | 103 | 180 | 27 | 104 | 2.36e-36 | 129 |
MS.gene34115.t1 | AT1G17130 | 28.502 | 207 | 129 | 5 | 11 | 212 | 8 | 200 | 5.97e-19 | 86.3 |
MS.gene34115.t1 | AT1G17130 | 27.570 | 214 | 129 | 5 | 11 | 212 | 8 | 207 | 5.33e-18 | 83.6 |
MS.gene34115.t1 | AT3G43250 | 33.945 | 109 | 58 | 3 | 11 | 117 | 8 | 104 | 1.86e-13 | 69.3 |
Find 73 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATCAGGGTATCTTGATTATA+AGG | 0.255625 | 1.2:+74812996 | MS.gene34115:CDS |
GACGGGCAATCCAGGGAATA+TGG | 0.258001 | 1.2:-74814958 | None:intergenic |
ATCACATACTCACAGTTCTT+TGG | 0.264942 | 1.2:-74814155 | None:intergenic |
TGGTGTTCAAGGCGGTAAAA+TGG | 0.307792 | 1.2:-74814557 | None:intergenic |
ACCTGGCTTGGATCCCATTC+TGG | 0.311079 | 1.2:-74812834 | None:intergenic |
TTGAGATGCCTTATAATATA+TGG | 0.313340 | 1.2:+74813470 | MS.gene34115:CDS |
CCTCCGCACCATATATTATA+AGG | 0.317386 | 1.2:-74813478 | None:intergenic |
TTTCTAGTGTCTTGCATTCA+TGG | 0.318374 | 1.2:-74815129 | None:intergenic |
GAGAGCAAGGAAGTTAGATC+AGG | 0.349867 | 1.2:+74812979 | MS.gene34115:CDS |
TCTACAGCATGCAGCTTTCA+TGG | 0.350388 | 1.2:-74814108 | None:intergenic |
AAGCGCAGCATCTAGCCTTT+TGG | 0.353767 | 1.2:+74815040 | MS.gene34115:CDS |
GGCATAGTCGTCCGAATGTC+TGG | 0.372030 | 1.2:-74814648 | None:intergenic |
CAAGTAACATACTCTAAGTT+TGG | 0.373219 | 1.2:-74814690 | None:intergenic |
AATCTTCCTCCTGGTGTTCA+AGG | 0.398061 | 1.2:-74814568 | None:intergenic |
GCATCTAGGAAAAGGGGCCT+TGG | 0.407781 | 1.2:+74814822 | MS.gene34115:CDS |
ATGGATGAGACGGGCAATCC+AGG | 0.417753 | 1.2:-74814966 | None:intergenic |
GGTTCTCTGAACAAGTTTCA+TGG | 0.426891 | 1.2:+74812938 | MS.gene34115:CDS |
GCTTCTTCTCTGCATTGAAC+CGG | 0.428388 | 1.2:-74813528 | None:intergenic |
AATGTCTGATGCCAGACATT+CGG | 0.444983 | 1.2:+74814637 | MS.gene34115:CDS |
GTTCTTTGGATCAGTTTGAA+TGG | 0.451321 | 1.2:-74814141 | None:intergenic |
CATCTAGGAAAAGGGGCCTT+GGG | 0.455684 | 1.2:+74814823 | MS.gene34115:CDS |
TGTTCTGTCAAGCAGGCAAA+AGG | 0.461856 | 1.2:+74815100 | MS.gene34115:CDS |
CGCTGGAGACGCACAAGCAC+TGG | 0.464581 | 1.2:-74814614 | None:intergenic |
AAGAAGCTGCATCTAGGAAA+AGG | 0.464590 | 1.2:+74814814 | MS.gene34115:CDS |
AGAAGCTGCATCTAGGAAAA+GGG | 0.469824 | 1.2:+74814815 | MS.gene34115:CDS |
CTATGATTGCAAAGGGTGTC+CGG | 0.472676 | 1.2:+74813509 | MS.gene34115:CDS |
ATGCAGAGAAGAAGCAAGTT+GGG | 0.475460 | 1.2:+74813536 | MS.gene34115:CDS |
GTCTGGCATCAGACATTCGC+TGG | 0.492170 | 1.2:-74814631 | None:intergenic |
ACGGGCAATCCAGGGAATAT+GGG | 0.497967 | 1.2:-74814957 | None:intergenic |
GCAGCATCTTGTTCTGAAGC+TGG | 0.501516 | 1.2:-74814858 | None:intergenic |
GAAAGCTGCATGCTGTAGAC+AGG | 0.504885 | 1.2:+74814112 | MS.gene34115:CDS |
AATGCTGCTCCCATATTCCC+TGG | 0.508968 | 1.2:+74814948 | MS.gene34115:CDS |
GTACGCAAATATACCTGGCT+TGG | 0.510300 | 1.2:-74812846 | None:intergenic |
CTGAAGAAGAAGCTGCATCT+AGG | 0.513065 | 1.2:+74814808 | MS.gene34115:CDS |
TCCAGAATGGGATCCAAGCC+AGG | 0.514395 | 1.2:+74812833 | MS.gene34115:CDS |
CAGCCTTCTCTTACCAGACA+TGG | 0.522667 | 1.2:-74814985 | None:intergenic |
GTTTATACCCTCCAGCCAAA+AGG | 0.523272 | 1.2:-74815055 | None:intergenic |
TTGCCCGTCTCATCCATGTC+TGG | 0.524578 | 1.2:+74814972 | MS.gene34115:CDS |
GAGGGTATAAACCGTCATCT+TGG | 0.526453 | 1.2:+74815066 | MS.gene34115:CDS |
TGCAATTCTATGATTGCAAA+GGG | 0.527726 | 1.2:+74813502 | MS.gene34115:CDS |
TTCGAGTTACCTGCTGATGA+AGG | 0.528478 | 1.2:+74814233 | MS.gene34115:CDS |
AATGCAGAGAAGAAGCAAGT+TGG | 0.531409 | 1.2:+74813535 | MS.gene34115:CDS |
TAAACCGTCATCTTGGTCAC+AGG | 0.534179 | 1.2:+74815073 | MS.gene34115:CDS |
AGGGAGCTGTTCTGTCAAGC+AGG | 0.536545 | 1.2:+74815093 | MS.gene34115:CDS |
CTTCCTTGCTCTCTCTCTCA+AGG | 0.536908 | 1.2:-74812969 | None:intergenic |
TCATGCACACCTTCATCAGC+AGG | 0.543966 | 1.2:-74814242 | None:intergenic |
AAATTTGTGTTACAGAGAGA+GGG | 0.546667 | 1.2:+74814522 | MS.gene34115:intron |
AACATACTCTAAGTTTGGCC+CGG | 0.552541 | 1.2:-74814685 | None:intergenic |
CATGTCTGGTAAGAGAAGGC+TGG | 0.552595 | 1.2:+74814986 | MS.gene34115:CDS |
TGGATGAGACGGGCAATCCA+GGG | 0.561142 | 1.2:-74814965 | None:intergenic |
GAACTTCACTTTCGCTGCTG+CGG | 0.562222 | 1.2:-74814880 | None:intergenic |
GTTCTGTCAAGCAGGCAAAA+GGG | 0.575210 | 1.2:+74815101 | MS.gene34115:CDS |
ATGCCTTGAGAGAGAGAGCA+AGG | 0.581873 | 1.2:+74812966 | MS.gene34115:CDS |
ATGCAATTCTATGATTGCAA+AGG | 0.583657 | 1.2:+74813501 | MS.gene34115:CDS |
ATCTGCTCTAGCAGCTGCAA+GGG | 0.592187 | 1.2:-74812796 | None:intergenic |
TATCTGCTCTAGCAGCTGCA+AGG | 0.592633 | 1.2:-74812797 | None:intergenic |
CTTACCAGACATGGATGAGA+CGG | 0.598118 | 1.2:-74814976 | None:intergenic |
CATCCATGTCTGGTAAGAGA+AGG | 0.598795 | 1.2:+74814982 | MS.gene34115:CDS |
TTACCAGACATGGATGAGAC+GGG | 0.611020 | 1.2:-74814975 | None:intergenic |
AGAGCAAGGAAGTTAGATCA+GGG | 0.613858 | 1.2:+74812980 | MS.gene34115:CDS |
GAAGCTGCATCTAGGAAAAG+GGG | 0.615335 | 1.2:+74814816 | MS.gene34115:CDS |
GTGAGTATGTGATCATCAGT+GGG | 0.620162 | 1.2:+74814165 | MS.gene34115:CDS |
CCTTATAATATATGGTGCGG+AGG | 0.625854 | 1.2:+74813478 | MS.gene34115:CDS |
GCTCCCTGTGACCAAGATGA+CGG | 0.632091 | 1.2:-74815077 | None:intergenic |
ATGCCTTATAATATATGGTG+CGG | 0.650909 | 1.2:+74813475 | MS.gene34115:CDS |
CTGGAAGCAGTCGAATCCCA+AGG | 0.652032 | 1.2:-74814839 | None:intergenic |
AAACCGTCATCTTGGTCACA+GGG | 0.655559 | 1.2:+74815074 | MS.gene34115:CDS |
TGTGAGTATGTGATCATCAG+TGG | 0.657354 | 1.2:+74814164 | MS.gene34115:CDS |
TGGCTTGGATCCCATTCTGG+AGG | 0.660594 | 1.2:-74812831 | None:intergenic |
CTTCCTCCTGGTGTTCAAGG+CGG | 0.672392 | 1.2:-74814565 | None:intergenic |
TTACCGCCTTGAACACCAGG+AGG | 0.712713 | 1.2:+74814562 | MS.gene34115:CDS |
TGGGAATTACTACTCTACGA+AGG | 0.715974 | 1.2:+74813555 | MS.gene34115:CDS |
TGAGTATGTGATCATCAGTG+GGG | 0.814262 | 1.2:+74814166 | MS.gene34115:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTTCATTTTTTTAAACAA+AGG | + | chr1.2:74813636-74813655 | MS.gene34115:intron | 10.0% |
!! | ATTAGATAATATGGAATAAA+AGG | - | chr1.2:74813434-74813453 | None:intergenic | 15.0% |
!!! | TATATGTACATATATTGATT+TGG | + | chr1.2:74814296-74814315 | MS.gene34115:intron | 15.0% |
!!! | TTAAATTCTAGTTTTGATTA+TGG | + | chr1.2:74812088-74812107 | MS.gene34115:intron | 15.0% |
!! | ACACTTGAAAATAATATGTA+AGG | - | chr1.2:74813866-74813885 | None:intergenic | 20.0% |
!! | AGATTATATTGCTTGATTAT+GGG | + | chr1.2:74812431-74812450 | MS.gene34115:intron | 20.0% |
!! | AGATTTGAAAAAAAAGAAAC+AGG | + | chr1.2:74814586-74814605 | MS.gene34115:CDS | 20.0% |
!! | CATCAAATTTATCAGAATTA+GGG | + | chr1.2:74812012-74812031 | MS.gene34115:intron | 20.0% |
!! | TAGATTATATTGCTTGATTA+TGG | + | chr1.2:74812430-74812449 | MS.gene34115:intron | 20.0% |
!!! | AAAAGCATTAAACTTGTTAA+AGG | - | chr1.2:74814425-74814444 | None:intergenic | 20.0% |
!!! | AAAGCATTAAACTTGTTAAA+GGG | - | chr1.2:74814424-74814443 | None:intergenic | 20.0% |
!!! | AAGTGTTTAATTTCTATTGT+CGG | + | chr1.2:74812640-74812659 | MS.gene34115:intron | 20.0% |
!!! | ATCATAATGGATCATTAAAT+TGG | - | chr1.2:74813255-74813274 | None:intergenic | 20.0% |
!!! | ATCTTTTAAAACCATGTATT+GGG | - | chr1.2:74812411-74812430 | None:intergenic | 20.0% |
!!! | ATTTTATAAGTTATACGACA+TGG | + | chr1.2:74812309-74812328 | MS.gene34115:intron | 20.0% |
!!! | CATATTTTTTTTTCTTCTTG+TGG | - | chr1.2:74812693-74812712 | None:intergenic | 20.0% |
!!! | TATCTTTTAAAACCATGTAT+TGG | - | chr1.2:74812412-74812431 | None:intergenic | 20.0% |
!!! | TTTTAAATCCATTTTTCCTA+TGG | - | chr1.2:74812268-74812287 | None:intergenic | 20.0% |
! | AAGTTGAAAAAAGTTTGTCA+TGG | - | chr1.2:74813770-74813789 | None:intergenic | 25.0% |
! | AATCACTATGAGACTATAAT+TGG | - | chr1.2:74813949-74813968 | None:intergenic | 25.0% |
! | AATCACTATTAGACTATAAC+TGG | - | chr1.2:74813833-74813852 | None:intergenic | 25.0% |
! | ACATGTAATATGAGTACTTA+TGG | + | chr1.2:74812605-74812624 | MS.gene34115:intron | 25.0% |
! | AGAATGGTCATTAGATAATA+TGG | - | chr1.2:74813443-74813462 | None:intergenic | 25.0% |
! | ATATGCTAAATGAAACAATG+TGG | + | chr1.2:74813133-74813152 | MS.gene34115:intron | 25.0% |
! | ATATTACAGTATTTCACCAT+AGG | + | chr1.2:74812249-74812268 | MS.gene34115:intron | 25.0% |
! | ATTTATCAGAATTAGGGTTA+AGG | + | chr1.2:74812018-74812037 | MS.gene34115:intron | 25.0% |
! | CAAATGCAAGTTAAGTTTAT+TGG | - | chr1.2:74812758-74812777 | None:intergenic | 25.0% |
! | CTAGTAAGTTTGACAAAAAT+AGG | + | chr1.2:74814904-74814923 | MS.gene34115:CDS | 25.0% |
! | GATGATATATTCTTCATGAA+TGG | + | chr1.2:74812053-74812072 | MS.gene34115:intron | 25.0% |
! | GATTATATTGCTTGATTATG+GGG | + | chr1.2:74812432-74812451 | MS.gene34115:intron | 25.0% |
! | GCATCAAATTTATCAGAATT+AGG | + | chr1.2:74812011-74812030 | MS.gene34115:intron | 25.0% |
! | TAAAACTGATACACAAGTAT+GGG | + | chr1.2:74812283-74812302 | MS.gene34115:intron | 25.0% |
! | TAAAATAAAATAGCCCAGAT+TGG | - | chr1.2:74813408-74813427 | None:intergenic | 25.0% |
! | TAAGTTTGACAAAAATAGGA+AGG | + | chr1.2:74814908-74814927 | MS.gene34115:CDS | 25.0% |
! | TAATCATTAACGTGTTTATC+TGG | + | chr1.2:74814062-74814081 | MS.gene34115:intron | 25.0% |
! | TAATGAGTTATCAAGACAAA+TGG | - | chr1.2:74813072-74813091 | None:intergenic | 25.0% |
! | TACAGAGAATAAAGGATTTA+CGG | - | chr1.2:74813113-74813132 | None:intergenic | 25.0% |
! | TAGCATATTACAGAGAATAA+AGG | - | chr1.2:74813121-74813140 | None:intergenic | 25.0% |
! | TTAAAACTGATACACAAGTA+TGG | + | chr1.2:74812282-74812301 | MS.gene34115:intron | 25.0% |
! | TTACAACAACAAAGAATTCA+TGG | + | chr1.2:74812350-74812369 | MS.gene34115:intron | 25.0% |
! | TTGAGATGCCTTATAATATA+TGG | + | chr1.2:74813470-74813489 | MS.gene34115:CDS | 25.0% |
!! | GAAGCATCTAATGTTTATTA+TGG | + | chr1.2:74813596-74813615 | MS.gene34115:intron | 25.0% |
!! | TAACTTGTATGTATTTGATG+TGG | + | chr1.2:74812713-74812732 | MS.gene34115:intron | 25.0% |
!!! | ATTTTTTTTTCTTCTTGTGG+TGG | - | chr1.2:74812690-74812709 | None:intergenic | 25.0% |
!!! | CTTTTGACTCTAAGAAAATA+GGG | - | chr1.2:74814778-74814797 | None:intergenic | 25.0% |
!!! | TAGTTTTGATTATGGTTTGA+TGG | + | chr1.2:74812096-74812115 | MS.gene34115:intron | 25.0% |
!!! | TATCAAGACAAATGGATTAA+TGG | - | chr1.2:74813064-74813083 | None:intergenic | 25.0% |
!!! | TCATTTTTTTAAACAAAGGC+AGG | + | chr1.2:74813640-74813659 | MS.gene34115:intron | 25.0% |
!!! | TCTTTTAAAACCATGTATTG+GGG | - | chr1.2:74812410-74812429 | None:intergenic | 25.0% |
!!! | TCTTTTGACTCTAAGAAAAT+AGG | - | chr1.2:74814779-74814798 | None:intergenic | 25.0% |
AAAACTGATACACAAGTATG+GGG | + | chr1.2:74812284-74812303 | MS.gene34115:intron | 30.0% | |
AAAATTTGTGTTACAGAGAG+AGG | + | chr1.2:74814521-74814540 | MS.gene34115:intron | 30.0% | |
AAATTTGTGTTACAGAGAGA+GGG | + | chr1.2:74814522-74814541 | MS.gene34115:intron | 30.0% | |
AACTCATTTCTGACTATTCT+AGG | - | chr1.2:74813176-74813195 | None:intergenic | 30.0% | |
AATGATCCATTATGATCGAA+AGG | + | chr1.2:74813259-74813278 | MS.gene34115:intron | 30.0% | |
ATGAGTACTTATGGATATCT+TGG | + | chr1.2:74812614-74812633 | MS.gene34115:intron | 30.0% | |
ATGATCCATTATGATCGAAA+GGG | + | chr1.2:74813260-74813279 | MS.gene34115:intron | 30.0% | |
ATGCAATTCTATGATTGCAA+AGG | + | chr1.2:74813501-74813520 | MS.gene34115:CDS | 30.0% | |
ATGCCCTAAATAAAAATCTC+CGG | + | chr1.2:74814666-74814685 | MS.gene34115:CDS | 30.0% | |
ATGCCTTATAATATATGGTG+CGG | + | chr1.2:74813475-74813494 | MS.gene34115:CDS | 30.0% | |
CAAGTAACATACTCTAAGTT+TGG | - | chr1.2:74814693-74814712 | None:intergenic | 30.0% | |
GTATTTCACCATAGGAAAAA+TGG | + | chr1.2:74812257-74812276 | MS.gene34115:intron | 30.0% | |
TATCTAATGACCATTCTTTC+AGG | + | chr1.2:74813446-74813465 | MS.gene34115:intron | 30.0% | |
TCTAAGAAAATAGGGAAAAG+GGG | - | chr1.2:74814770-74814789 | None:intergenic | 30.0% | |
TGCAATTCTATGATTGCAAA+GGG | + | chr1.2:74813502-74813521 | MS.gene34115:CDS | 30.0% | |
TTAATGCACTGCATTATCTT+GGG | + | chr1.2:74814001-74814020 | MS.gene34115:intron | 30.0% | |
TTGAACAGCACTATTTAGAT+TGG | - | chr1.2:74814028-74814047 | None:intergenic | 30.0% | |
! | ACTCTAAGAAAATAGGGAAA+AGG | - | chr1.2:74814772-74814791 | None:intergenic | 30.0% |
! | ATCAGGGTATCTTGATTATA+AGG | + | chr1.2:74812996-74813015 | MS.gene34115:CDS | 30.0% |
! | ATTGAAGGAAAGAGCTTTTA+TGG | - | chr1.2:74812386-74812405 | None:intergenic | 30.0% |
! | CTAGTAGATTTTAAATGCCT+GGG | + | chr1.2:74812527-74812546 | MS.gene34115:intron | 30.0% |
! | CTCTAAGAAAATAGGGAAAA+GGG | - | chr1.2:74814771-74814790 | None:intergenic | 30.0% |
! | GCAAGATTTTAAACTGTCAT+TGG | - | chr1.2:74813732-74813751 | None:intergenic | 30.0% |
! | TCTAGTAGATTTTAAATGCC+TGG | + | chr1.2:74812526-74812545 | MS.gene34115:intron | 30.0% |
! | TTGAAGGAAAGAGCTTTTAT+GGG | - | chr1.2:74812385-74812404 | None:intergenic | 30.0% |
! | TTGATGGATGATCAAATTGA+TGG | + | chr1.2:74812112-74812131 | MS.gene34115:intron | 30.0% |
!! | ATGTTTTATGTTGATTGTGG+AGG | + | chr1.2:74812135-74812154 | MS.gene34115:intron | 30.0% |
!! | TGGATGTTTTATGTTGATTG+TGG | + | chr1.2:74812132-74812151 | MS.gene34115:intron | 30.0% |
!!! | TTTTTTTCAAATCTTCCTCC+TGG | - | chr1.2:74814580-74814599 | None:intergenic | 30.0% |
AAAATAGCCCAGATTGGAAA+AGG | - | chr1.2:74813402-74813421 | None:intergenic | 35.0% | |
AAGTTTGCCTTTGAACCTTT+GGG | + | chr1.2:74814370-74814389 | MS.gene34115:intron | 35.0% | |
AATCCATAGAAAACAGCTGT+TGG | - | chr1.2:74814397-74814416 | None:intergenic | 35.0% | |
ACAAAAATAGGAAGGACAAG+CGG | + | chr1.2:74814916-74814935 | MS.gene34115:CDS | 35.0% | |
ACACTATATTTCCTCCTTTC+AGG | + | chr1.2:74812916-74812935 | MS.gene34115:intron | 35.0% | |
ACTATCCCTTTCGATCATAA+TGG | - | chr1.2:74813268-74813287 | None:intergenic | 35.0% | |
AGGGATAGTCTACTTTATGT+AGG | + | chr1.2:74813279-74813298 | MS.gene34115:intron | 35.0% | |
AGGGTTAAGGATCAAATTGA+TGG | + | chr1.2:74812031-74812050 | MS.gene34115:intron | 35.0% | |
ATCACATACTCACAGTTCTT+TGG | - | chr1.2:74814158-74814177 | None:intergenic | 35.0% | |
ATGCGATTGCATCTTTCAAT+TGG | + | chr1.2:74814346-74814365 | MS.gene34115:intron | 35.0% | |
CACTATATTTCCTCCTTTCA+GGG | + | chr1.2:74812917-74812936 | MS.gene34115:intron | 35.0% | |
CTAAGAAAATAGGGAAAAGG+GGG | - | chr1.2:74814769-74814788 | None:intergenic | 35.0% | |
GAGAATAAAGGATTTACGGT+AGG | - | chr1.2:74813109-74813128 | None:intergenic | 35.0% | |
GGATAGTCTACTTTATGTAG+GGG | + | chr1.2:74813281-74813300 | MS.gene34115:intron | 35.0% | |
GGGATAGTCTACTTTATGTA+GGG | + | chr1.2:74813280-74813299 | MS.gene34115:intron | 35.0% | |
GTTAATGCACTGCATTATCT+TGG | + | chr1.2:74814000-74814019 | MS.gene34115:intron | 35.0% | |
GTTCTTTGGATCAGTTTGAA+TGG | - | chr1.2:74814144-74814163 | None:intergenic | 35.0% | |
TGCCCTAAATAAAAATCTCC+GGG | + | chr1.2:74814667-74814686 | MS.gene34115:CDS | 35.0% | |
TTGTTGTACGCAAATATACC+TGG | - | chr1.2:74812854-74812873 | None:intergenic | 35.0% | |
! | ACTTTTACTTTCCTCCAGAA+TGG | + | chr1.2:74812820-74812839 | MS.gene34115:CDS | 35.0% |
! | CTTTTACTTTCCTCCAGAAT+GGG | + | chr1.2:74812821-74812840 | MS.gene34115:CDS | 35.0% |
! | TAGATTTTAAATGCCTGGGT+GGG | + | chr1.2:74812531-74812550 | MS.gene34115:intron | 35.0% |
! | TAGTAACTGATTCACTATCG+TGG | + | chr1.2:74814474-74814493 | MS.gene34115:intron | 35.0% |
!! | AACTGAGGATTTTGATGTTG+AGG | + | chr1.2:74814199-74814218 | MS.gene34115:CDS | 35.0% |
!! | GAGAGTGTTGAAGAATTTGA+CGG | + | chr1.2:74812468-74812487 | MS.gene34115:intron | 35.0% |
AACATACTCTAAGTTTGGCC+CGG | - | chr1.2:74814688-74814707 | None:intergenic | 40.0% | |
AAGAAGCTGCATCTAGGAAA+AGG | + | chr1.2:74814814-74814833 | MS.gene34115:CDS | 40.0% | |
AATCGCATGTCTCAAACTAC+TGG | - | chr1.2:74814334-74814353 | None:intergenic | 40.0% | |
AATGCAGAGAAGAAGCAAGT+TGG | + | chr1.2:74813535-74813554 | MS.gene34115:CDS | 40.0% | |
AATGTCTGATGCCAGACATT+CGG | + | chr1.2:74814637-74814656 | MS.gene34115:CDS | 40.0% | |
AGAAGCTGCATCTAGGAAAA+GGG | + | chr1.2:74814815-74814834 | MS.gene34115:CDS | 40.0% | |
AGAGCAAGGAAGTTAGATCA+GGG | + | chr1.2:74812980-74812999 | MS.gene34115:CDS | 40.0% | |
ATCGCATGTCTCAAACTACT+GGG | - | chr1.2:74814333-74814352 | None:intergenic | 40.0% | |
ATGCAGAGAAGAAGCAAGTT+GGG | + | chr1.2:74813536-74813555 | MS.gene34115:CDS | 40.0% | |
ATTCGTGGGATGTGTAATTC+AGG | + | chr1.2:74812170-74812189 | MS.gene34115:intron | 40.0% | |
CAAAAATAGGAAGGACAAGC+GGG | + | chr1.2:74814917-74814936 | MS.gene34115:CDS | 40.0% | |
CAAGTTTGCCTTTGAACCTT+TGG | + | chr1.2:74814369-74814388 | MS.gene34115:intron | 40.0% | |
CCACATAGAGACAAAGATCA+GGG | - | chr1.2:74812667-74812686 | None:intergenic | 40.0% | |
CCTCCGCACCATATATTATA+AGG | - | chr1.2:74813481-74813500 | None:intergenic | 40.0% | |
CCTTATAATATATGGTGCGG+AGG | + | chr1.2:74813478-74813497 | MS.gene34115:CDS | 40.0% | |
CTACTTACTGGCGTGTTATA+TGG | + | chr1.2:74813306-74813325 | MS.gene34115:intron | 40.0% | |
GCATCTCAAACCTGAAAGAA+TGG | - | chr1.2:74813459-74813478 | None:intergenic | 40.0% | |
GGTAGTAATACACACACTCA+CGG | + | chr1.2:74812489-74812508 | MS.gene34115:intron | 40.0% | |
GGTTCTCTGAACAAGTTTCA+TGG | + | chr1.2:74812938-74812957 | MS.gene34115:CDS | 40.0% | |
GTGAGTATGTGATCATCAGT+GGG | + | chr1.2:74814165-74814184 | MS.gene34115:CDS | 40.0% | |
TATCTGGATACGTGCAGATA+TGG | + | chr1.2:74814078-74814097 | MS.gene34115:intron | 40.0% | |
TGAGTATGTGATCATCAGTG+GGG | + | chr1.2:74814166-74814185 | MS.gene34115:CDS | 40.0% | |
TGGGAATTACTACTCTACGA+AGG | + | chr1.2:74813555-74813574 | MS.gene34115:CDS | 40.0% | |
TGTGAGTATGTGATCATCAG+TGG | + | chr1.2:74814164-74814183 | MS.gene34115:CDS | 40.0% | |
TTAAGCACAGTTGCAATGCT+AGG | - | chr1.2:74814451-74814470 | None:intergenic | 40.0% | |
! | ACAAGTTTGTTCACATGAGC+AGG | - | chr1.2:74813676-74813695 | None:intergenic | 40.0% |
! | AGATTTTAAATGCCTGGGTG+GGG | + | chr1.2:74812532-74812551 | MS.gene34115:intron | 40.0% |
! | GTAGATTTTAAATGCCTGGG+TGG | + | chr1.2:74812530-74812549 | MS.gene34115:intron | 40.0% |
!! | AGAGCTTTTATGGGTTGTGA+TGG | - | chr1.2:74812376-74812395 | None:intergenic | 40.0% |
!! | GGCCCGGAGATTTTTATTTA+GGG | - | chr1.2:74814672-74814691 | None:intergenic | 40.0% |
!! | TGGCCCGGAGATTTTTATTT+AGG | - | chr1.2:74814673-74814692 | None:intergenic | 40.0% |
AAAACAGCTGTTGGACCCAA+AGG | - | chr1.2:74814388-74814407 | None:intergenic | 45.0% | |
AAACCGTCATCTTGGTCACA+GGG | + | chr1.2:74815074-74815093 | MS.gene34115:CDS | 45.0% | |
AATCTTCCTCCTGGTGTTCA+AGG | - | chr1.2:74814571-74814590 | None:intergenic | 45.0% | |
AGGAGCTTGGAGTAAATTCG+TGG | + | chr1.2:74812155-74812174 | MS.gene34115:intron | 45.0% | |
ATAGCCCAGATTGGAAAAGG+AGG | - | chr1.2:74813399-74813418 | None:intergenic | 45.0% | |
CATCCATGTCTGGTAAGAGA+AGG | + | chr1.2:74814982-74815001 | MS.gene34115:CDS | 45.0% | |
CCCTGATCTTTGTCTCTATG+TGG | + | chr1.2:74812664-74812683 | MS.gene34115:intron | 45.0% | |
CTGAAGAAGAAGCTGCATCT+AGG | + | chr1.2:74814808-74814827 | MS.gene34115:CDS | 45.0% | |
CTTACCAGACATGGATGAGA+CGG | - | chr1.2:74814979-74814998 | None:intergenic | 45.0% | |
CTTGTTCAGAGAACCCTGAA+AGG | - | chr1.2:74812933-74812952 | None:intergenic | 45.0% | |
GAAGCTGCATCTAGGAAAAG+GGG | + | chr1.2:74814816-74814835 | MS.gene34115:CDS | 45.0% | |
GAGAGCAAGGAAGTTAGATC+AGG | + | chr1.2:74812979-74812998 | MS.gene34115:CDS | 45.0% | |
GCCACATAGAGACAAAGATC+AGG | - | chr1.2:74812668-74812687 | None:intergenic | 45.0% | |
GCTTCTTCTCTGCATTGAAC+CGG | - | chr1.2:74813531-74813550 | None:intergenic | 45.0% | |
GGAGCTTGGAGTAAATTCGT+GGG | + | chr1.2:74812156-74812175 | MS.gene34115:intron | 45.0% | |
GTACGCAAATATACCTGGCT+TGG | - | chr1.2:74812849-74812868 | None:intergenic | 45.0% | |
GTTCTGTCAAGCAGGCAAAA+GGG | + | chr1.2:74815101-74815120 | MS.gene34115:CDS | 45.0% | |
GTTTATACCCTCCAGCCAAA+AGG | - | chr1.2:74815058-74815077 | None:intergenic | 45.0% | |
TAAACCGTCATCTTGGTCAC+AGG | + | chr1.2:74815073-74815092 | MS.gene34115:CDS | 45.0% | |
TCCTTCAATGCCCCAATACA+TGG | + | chr1.2:74812397-74812416 | MS.gene34115:intron | 45.0% | |
TCGCATGTCTCAAACTACTG+GGG | - | chr1.2:74814332-74814351 | None:intergenic | 45.0% | |
TCTACAGCATGCAGCTTTCA+TGG | - | chr1.2:74814111-74814130 | None:intergenic | 45.0% | |
TGGGGCTCAGAAAAAAACTG+AGG | + | chr1.2:74814184-74814203 | MS.gene34115:CDS | 45.0% | |
TGGTGTTCAAGGCGGTAAAA+TGG | - | chr1.2:74814560-74814579 | None:intergenic | 45.0% | |
TGTTCTGTCAAGCAGGCAAA+AGG | + | chr1.2:74815100-74815119 | MS.gene34115:CDS | 45.0% | |
TGTTGGACCCAAAGGTTCAA+AGG | - | chr1.2:74814380-74814399 | None:intergenic | 45.0% | |
TTACCAGACATGGATGAGAC+GGG | - | chr1.2:74814978-74814997 | None:intergenic | 45.0% | |
TTGCTTGATTATGGGGTGAG+TGG | + | chr1.2:74812439-74812458 | MS.gene34115:intron | 45.0% | |
! | ATGTTGATTGTGGAGGAGCT+TGG | + | chr1.2:74812142-74812161 | MS.gene34115:intron | 45.0% |
! | ATTTTACCGCCTTGAACACC+AGG | + | chr1.2:74814559-74814578 | MS.gene34115:CDS | 45.0% |
! | GAGGGTATAAACCGTCATCT+TGG | + | chr1.2:74815066-74815085 | MS.gene34115:CDS | 45.0% |
! | TTCGAGTTACCTGCTGATGA+AGG | + | chr1.2:74814233-74814252 | MS.gene34115:CDS | 45.0% |
!! | ACCATGTATTGGGGCATTGA+AGG | - | chr1.2:74812401-74812420 | None:intergenic | 45.0% |
!! | CTATGATTGCAAAGGGTGTC+CGG | + | chr1.2:74813509-74813528 | MS.gene34115:CDS | 45.0% |
!! | GGTCCAACAGCTGTTTTCTA+TGG | + | chr1.2:74814391-74814410 | MS.gene34115:intron | 45.0% |
!! | TATGTAGGGGTGCTACTTAC+TGG | + | chr1.2:74813294-74813313 | MS.gene34115:intron | 45.0% |
AATGCTGCTCCCATATTCCC+TGG | + | chr1.2:74814948-74814967 | MS.gene34115:CDS | 50.0% | |
ACGGGCAATCCAGGGAATAT+GGG | - | chr1.2:74814960-74814979 | None:intergenic | 50.0% | |
ATCTGCTCTAGCAGCTGCAA+GGG | - | chr1.2:74812799-74812818 | None:intergenic | 50.0% | |
ATGCCTTGAGAGAGAGAGCA+AGG | + | chr1.2:74812966-74812985 | MS.gene34115:CDS | 50.0% | |
CAGCCTTCTCTTACCAGACA+TGG | - | chr1.2:74814988-74815007 | None:intergenic | 50.0% | |
CATCTAGGAAAAGGGGCCTT+GGG | + | chr1.2:74814823-74814842 | MS.gene34115:CDS | 50.0% | |
CATGTCTGGTAAGAGAAGGC+TGG | + | chr1.2:74814986-74815005 | MS.gene34115:CDS | 50.0% | |
CTTCCTTGCTCTCTCTCTCA+AGG | - | chr1.2:74812972-74812991 | None:intergenic | 50.0% | |
CTTGAAAGAGCTGAACCAGC+TGG | + | chr1.2:74813373-74813392 | MS.gene34115:intron | 50.0% | |
GAAAGCTGCATGCTGTAGAC+AGG | + | chr1.2:74814112-74814131 | MS.gene34115:CDS | 50.0% | |
GAACTTCACTTTCGCTGCTG+CGG | - | chr1.2:74814883-74814902 | None:intergenic | 50.0% | |
GTTCAGAGAACCCTGAAAGG+AGG | - | chr1.2:74812930-74812949 | None:intergenic | 50.0% | |
TATCTGCTCTAGCAGCTGCA+AGG | - | chr1.2:74812800-74812819 | None:intergenic | 50.0% | |
TCATGCACACCTTCATCAGC+AGG | - | chr1.2:74814245-74814264 | None:intergenic | 50.0% | |
TTTAAATGCCTGGGTGGGGA+GGG | + | chr1.2:74812536-74812555 | MS.gene34115:intron | 50.0% | |
! | CTGGCCTCCTTTTCCAATCT+GGG | + | chr1.2:74813392-74813411 | MS.gene34115:intron | 50.0% |
! | TTTTAAATGCCTGGGTGGGG+AGG | + | chr1.2:74812535-74812554 | MS.gene34115:intron | 50.0% |
!! | AAGCGCAGCATCTAGCCTTT+TGG | + | chr1.2:74815040-74815059 | MS.gene34115:CDS | 50.0% |
!! | CATCTAGCCTTTTGGCTGGA+GGG | + | chr1.2:74815048-74815067 | MS.gene34115:CDS | 50.0% |
!! | GCAGCATCTTGTTCTGAAGC+TGG | - | chr1.2:74814861-74814880 | None:intergenic | 50.0% |
AGGGAGCTGTTCTGTCAAGC+AGG | + | chr1.2:74815093-74815112 | MS.gene34115:CDS | 55.0% | |
ATGGATGAGACGGGCAATCC+AGG | - | chr1.2:74814969-74814988 | None:intergenic | 55.0% | |
ATTATGGGGTGAGTGGCGCT+AGG | + | chr1.2:74812446-74812465 | MS.gene34115:intron | 55.0% | |
CTGGAAGCAGTCGAATCCCA+AGG | - | chr1.2:74814842-74814861 | None:intergenic | 55.0% | |
CTTCCTCCTGGTGTTCAAGG+CGG | - | chr1.2:74814568-74814587 | None:intergenic | 55.0% | |
GACGGGCAATCCAGGGAATA+TGG | - | chr1.2:74814961-74814980 | None:intergenic | 55.0% | |
GATTGGAAAAGGAGGCCAGC+TGG | - | chr1.2:74813391-74813410 | None:intergenic | 55.0% | |
GCAGCTACTAAGCGACAGTG+TGG | + | chr1.2:74813038-74813057 | MS.gene34115:intron | 55.0% | |
GCATCTAGGAAAAGGGGCCT+TGG | + | chr1.2:74814822-74814841 | MS.gene34115:CDS | 55.0% | |
GCTCCCTGTGACCAAGATGA+CGG | - | chr1.2:74815080-74815099 | None:intergenic | 55.0% | |
GGCATAGTCGTCCGAATGTC+TGG | - | chr1.2:74814651-74814670 | None:intergenic | 55.0% | |
GTCTGGCATCAGACATTCGC+TGG | - | chr1.2:74814634-74814653 | None:intergenic | 55.0% | |
TCCAGAATGGGATCCAAGCC+AGG | + | chr1.2:74812833-74812852 | MS.gene34115:CDS | 55.0% | |
TGGATGAGACGGGCAATCCA+GGG | - | chr1.2:74814968-74814987 | None:intergenic | 55.0% | |
TTACCGCCTTGAACACCAGG+AGG | + | chr1.2:74814562-74814581 | MS.gene34115:CDS | 55.0% | |
TTGCCCGTCTCATCCATGTC+TGG | + | chr1.2:74814972-74814991 | MS.gene34115:CDS | 55.0% | |
! | TGGCTTGGATCCCATTCTGG+AGG | - | chr1.2:74812834-74812853 | None:intergenic | 55.0% |
!! | ACCTGGCTTGGATCCCATTC+TGG | - | chr1.2:74812837-74812856 | None:intergenic | 55.0% |
!! | GCAGCATCTAGCCTTTTGGC+TGG | + | chr1.2:74815044-74815063 | MS.gene34115:CDS | 55.0% |
!! | GCATCTAGCCTTTTGGCTGG+AGG | + | chr1.2:74815047-74815066 | MS.gene34115:CDS | 55.0% |
!! | GCTGGCCTCCTTTTCCAATC+TGG | + | chr1.2:74813391-74813410 | MS.gene34115:intron | 55.0% |
CGCTGGAGACGCACAAGCAC+TGG | - | chr1.2:74814617-74814636 | None:intergenic | 65.0% | |
GCCTGGGTGGGGAGGGAGTA+GGG | + | chr1.2:74812543-74812562 | MS.gene34115:intron | 70.0% | |
TCCCTACTCCCTCCCCACCC+AGG | - | chr1.2:74812547-74812566 | None:intergenic | 70.0% | |
TGCCTGGGTGGGGAGGGAGT+AGG | + | chr1.2:74812542-74812561 | MS.gene34115:intron | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 74811966 | 74815148 | 74811966 | ID=MS.gene34115 |
chr1.2 | mRNA | 74811966 | 74815148 | 74811966 | ID=MS.gene34115.t1;Parent=MS.gene34115 |
chr1.2 | exon | 74811966 | 74811968 | 74811966 | ID=MS.gene34115.t1.exon1;Parent=MS.gene34115.t1 |
chr1.2 | CDS | 74811966 | 74811968 | 74811966 | ID=cds.MS.gene34115.t1;Parent=MS.gene34115.t1 |
chr1.2 | exon | 74812792 | 74812854 | 74812792 | ID=MS.gene34115.t1.exon2;Parent=MS.gene34115.t1 |
chr1.2 | CDS | 74812792 | 74812854 | 74812792 | ID=cds.MS.gene34115.t1;Parent=MS.gene34115.t1 |
chr1.2 | exon | 74812938 | 74813017 | 74812938 | ID=MS.gene34115.t1.exon3;Parent=MS.gene34115.t1 |
chr1.2 | CDS | 74812938 | 74813017 | 74812938 | ID=cds.MS.gene34115.t1;Parent=MS.gene34115.t1 |
chr1.2 | exon | 74813468 | 74813576 | 74813468 | ID=MS.gene34115.t1.exon4;Parent=MS.gene34115.t1 |
chr1.2 | CDS | 74813468 | 74813576 | 74813468 | ID=cds.MS.gene34115.t1;Parent=MS.gene34115.t1 |
chr1.2 | exon | 74814095 | 74814254 | 74814095 | ID=MS.gene34115.t1.exon5;Parent=MS.gene34115.t1 |
chr1.2 | CDS | 74814095 | 74814254 | 74814095 | ID=cds.MS.gene34115.t1;Parent=MS.gene34115.t1 |
chr1.2 | exon | 74814537 | 74814700 | 74814537 | ID=MS.gene34115.t1.exon6;Parent=MS.gene34115.t1 |
chr1.2 | CDS | 74814537 | 74814700 | 74814537 | ID=cds.MS.gene34115.t1;Parent=MS.gene34115.t1 |
chr1.2 | exon | 74814789 | 74815148 | 74814789 | ID=MS.gene34115.t1.exon7;Parent=MS.gene34115.t1 |
chr1.2 | CDS | 74814789 | 74815148 | 74814789 | ID=cds.MS.gene34115.t1;Parent=MS.gene34115.t1 |
Gene Sequence |
Protein sequence |