Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35314.t1 | XP_024632360.1 | 70.9 | 247 | 59 | 3 | 51 | 292 | 20 | 258 | 4.40E-85 | 324.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35314.t1 | Q9MAT6 | 52.9 | 51 | 24 | 0 | 242 | 292 | 158 | 208 | 1.6e-06 | 55.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35314.t1 | A0A072VBD4 | 70.9 | 247 | 59 | 3 | 51 | 292 | 20 | 258 | 3.2e-85 | 324.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene35314 | 0.824843 | 6.48E-54 | -1.69E-46 |
| MS.gene049159 | MS.gene35314 | 0.808777 | 2.62E-50 | -1.69E-46 |
| MS.gene049254 | MS.gene35314 | 0.823828 | 1.12E-53 | -1.69E-46 |
| MS.gene049350 | MS.gene35314 | 0.805777 | 1.13E-49 | -1.69E-46 |
| MS.gene049404 | MS.gene35314 | 0.816002 | 6.92E-52 | -1.69E-46 |
| MS.gene049711 | MS.gene35314 | 0.811398 | 7.14E-51 | -1.69E-46 |
| MS.gene049850 | MS.gene35314 | 0.803228 | 3.85E-49 | -1.69E-46 |
| MS.gene050026 | MS.gene35314 | 0.807622 | 4.62E-50 | -1.69E-46 |
| MS.gene050156 | MS.gene35314 | 0.817308 | 3.53E-52 | -1.69E-46 |
| MS.gene050844 | MS.gene35314 | 0.804059 | 2.59E-49 | -1.69E-46 |
| MS.gene051198 | MS.gene35314 | 0.81195 | 5.42E-51 | -1.69E-46 |
| MS.gene051247 | MS.gene35314 | 0.822815 | 1.94E-53 | -1.69E-46 |
| MS.gene051332 | MS.gene35314 | 0.815054 | 1.12E-51 | -1.69E-46 |
| MS.gene051594 | MS.gene35314 | 0.806508 | 7.95E-50 | -1.69E-46 |
| MS.gene051719 | MS.gene35314 | 0.814953 | 1.18E-51 | -1.69E-46 |
| MS.gene051720 | MS.gene35314 | 0.820617 | 6.24E-53 | -1.69E-46 |
| MS.gene051744 | MS.gene35314 | 0.833423 | 5.38E-56 | -1.69E-46 |
| MS.gene052463 | MS.gene35314 | 0.802463 | 5.54E-49 | -1.69E-46 |
| MS.gene052516 | MS.gene35314 | 0.806642 | 7.45E-50 | -1.69E-46 |
| MS.gene052519 | MS.gene35314 | 0.836892 | 7.17E-57 | -1.69E-46 |
| MS.gene052582 | MS.gene35314 | 0.813216 | 2.86E-51 | -1.69E-46 |
| MS.gene052584 | MS.gene35314 | 0.826764 | 2.27E-54 | -1.69E-46 |
| MS.gene052773 | MS.gene35314 | 0.831167 | 1.95E-55 | -1.69E-46 |
| MS.gene052863 | MS.gene35314 | 0.811581 | 6.52E-51 | -1.69E-46 |
| MS.gene053226 | MS.gene35314 | 0.834324 | 3.20E-56 | -1.69E-46 |
| MS.gene053621 | MS.gene35314 | 0.804116 | 2.52E-49 | -1.69E-46 |
| MS.gene053966 | MS.gene35314 | 0.82993 | 3.91E-55 | -1.69E-46 |
| MS.gene054236 | MS.gene35314 | 0.813966 | 1.96E-51 | -1.69E-46 |
| MS.gene054651 | MS.gene35314 | 0.849972 | 2.29E-60 | -1.69E-46 |
| MS.gene054775 | MS.gene35314 | 0.837277 | 5.72E-57 | -1.69E-46 |
| MS.gene054991 | MS.gene35314 | 0.804946 | 1.69E-49 | -1.69E-46 |
| MS.gene055465 | MS.gene35314 | 0.804377 | 2.22E-49 | -1.69E-46 |
| MS.gene055466 | MS.gene35314 | 0.817389 | 3.38E-52 | -1.69E-46 |
| MS.gene055586 | MS.gene35314 | 0.812915 | 3.33E-51 | -1.69E-46 |
| MS.gene055589 | MS.gene35314 | 0.819519 | 1.11E-52 | -1.69E-46 |
| MS.gene055778 | MS.gene35314 | 0.811196 | 7.90E-51 | -1.69E-46 |
| MS.gene055818 | MS.gene35314 | 0.813109 | 3.02E-51 | -1.69E-46 |
| MS.gene055926 | MS.gene35314 | 0.809071 | 2.27E-50 | -1.69E-46 |
| MS.gene056050 | MS.gene35314 | 0.826179 | 3.13E-54 | -1.69E-46 |
| MS.gene056366 | MS.gene35314 | 0.808346 | 3.24E-50 | -1.69E-46 |
| MS.gene056595 | MS.gene35314 | 0.822226 | 2.65E-53 | -1.69E-46 |
| MS.gene057026 | MS.gene35314 | 0.808774 | 2.63E-50 | -1.69E-46 |
| MS.gene057208 | MS.gene35314 | 0.806312 | 8.74E-50 | -1.69E-46 |
| MS.gene057915 | MS.gene35314 | 0.811869 | 5.64E-51 | -1.69E-46 |
| MS.gene058010 | MS.gene35314 | 0.810894 | 9.18E-51 | -1.69E-46 |
| MS.gene058037 | MS.gene35314 | 0.815149 | 1.07E-51 | -1.69E-46 |
| MS.gene058625 | MS.gene35314 | 0.83368 | 4.64E-56 | -1.69E-46 |
| MS.gene058829 | MS.gene35314 | 0.804805 | 1.81E-49 | -1.69E-46 |
| MS.gene058979 | MS.gene35314 | 0.803125 | 4.05E-49 | -1.69E-46 |
| MS.gene059272 | MS.gene35314 | 0.806585 | 7.66E-50 | -1.69E-46 |
| MS.gene059625 | MS.gene35314 | 0.812439 | 4.24E-51 | -1.69E-46 |
| MS.gene059842 | MS.gene35314 | 0.815401 | 9.42E-52 | -1.69E-46 |
| MS.gene060322 | MS.gene35314 | 0.807109 | 5.94E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35314.t1 | MTR_2g084410 | 75.875 | 257 | 29 | 5 | 51 | 292 | 20 | 258 | 2.61e-127 | 363 |
| MS.gene35314.t1 | MTR_2g084375 | 75.097 | 257 | 31 | 5 | 51 | 292 | 6 | 244 | 2.29e-126 | 361 |
| MS.gene35314.t1 | MTR_2g084425 | 71.359 | 206 | 33 | 4 | 10 | 207 | 180 | 367 | 2.94e-76 | 250 |
| MS.gene35314.t1 | MTR_2g084425 | 71.359 | 206 | 33 | 4 | 10 | 207 | 180 | 367 | 6.29e-76 | 250 |
| MS.gene35314.t1 | MTR_2g072760 | 70.370 | 135 | 36 | 1 | 49 | 183 | 5 | 135 | 8.38e-59 | 185 |
| MS.gene35314.t1 | MTR_2g072770 | 55.000 | 180 | 38 | 3 | 12 | 184 | 11 | 154 | 4.17e-54 | 173 |
| MS.gene35314.t1 | MTR_3g009890 | 78.571 | 56 | 12 | 0 | 237 | 292 | 156 | 211 | 7.14e-21 | 90.1 |
| MS.gene35314.t1 | MTR_7g023750 | 37.931 | 116 | 60 | 3 | 54 | 169 | 404 | 507 | 1.16e-14 | 74.3 |
| MS.gene35314.t1 | MTR_7g023750 | 37.931 | 116 | 60 | 3 | 54 | 169 | 401 | 504 | 1.32e-14 | 74.3 |
| MS.gene35314.t1 | MTR_7g023750 | 37.931 | 116 | 60 | 3 | 54 | 169 | 358 | 461 | 1.46e-14 | 73.9 |
| MS.gene35314.t1 | MTR_7g102610 | 29.101 | 189 | 120 | 4 | 1 | 189 | 198 | 372 | 3.40e-14 | 73.2 |
| MS.gene35314.t1 | MTR_4g063150 | 31.897 | 116 | 66 | 3 | 54 | 169 | 318 | 420 | 1.08e-12 | 68.2 |
| MS.gene35314.t1 | MTR_1g062330 | 30.405 | 148 | 94 | 3 | 56 | 203 | 97 | 235 | 9.29e-12 | 65.9 |
| MS.gene35314.t1 | MTR_1g062330 | 30.405 | 148 | 94 | 3 | 56 | 203 | 97 | 235 | 9.58e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35314.t1 | AT2G27980 | 42.289 | 201 | 95 | 6 | 24 | 215 | 342 | 530 | 9.83e-35 | 133 |
| MS.gene35314.t1 | AT2G36720 | 29.101 | 189 | 119 | 4 | 55 | 238 | 261 | 439 | 2.88e-15 | 76.6 |
| MS.gene35314.t1 | AT2G36720 | 29.101 | 189 | 119 | 4 | 55 | 238 | 261 | 439 | 2.88e-15 | 76.6 |
| MS.gene35314.t1 | AT5G13660 | 37.069 | 116 | 61 | 4 | 54 | 169 | 398 | 501 | 6.24e-14 | 72.0 |
| MS.gene35314.t1 | AT5G13660 | 36.207 | 116 | 63 | 4 | 54 | 169 | 398 | 502 | 1.30e-13 | 71.2 |
Find 84 sgRNAs with CRISPR-Local
Find 135 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAGGGAAAATGGGGTTTC+TGG | 0.209531 | 2.1:+17173476 | MS.gene35314:CDS |
| TTCTGGGGTTTCGCGGATTA+TGG | 0.250867 | 2.1:+17173493 | MS.gene35314:CDS |
| TCTTCTGGCTACTGGGATTC+TGG | 0.255622 | 2.1:+17173553 | MS.gene35314:CDS |
| GTGTGGGTTTAGCATCTTGT+AGG | 0.288030 | 2.1:+17173858 | MS.gene35314:CDS |
| TGATGTGTAGGCGCGTAAAC+CGG | 0.351934 | 2.1:+17173724 | MS.gene35314:intron |
| AATGTTGTTGAAAGGGAAAA+TGG | 0.353344 | 2.1:+17173467 | MS.gene35314:CDS |
| AGAGGATGCGCTCTTGGTTT+CGG | 0.354013 | 2.1:+17174321 | MS.gene35314:CDS |
| TGGGAGTTGTAAGGGGAATC+AGG | 0.356202 | 2.1:+17173799 | MS.gene35314:CDS |
| TGTCAAGGTGAAGGATCTTC+TGG | 0.356510 | 2.1:+17173538 | MS.gene35314:CDS |
| AGTGTCTGTGCTGGACTAAT+TGG | 0.366436 | 2.1:-17175249 | None:intergenic |
| GTGAAGGATCTTCTGGCTAC+TGG | 0.382782 | 2.1:+17173545 | MS.gene35314:CDS |
| AAAGGGAAAATGGGGTTTCT+GGG | 0.382880 | 2.1:+17173477 | MS.gene35314:CDS |
| ACAAGGTGTGATCAAAGATT+CGG | 0.383443 | 2.1:+17173760 | MS.gene35314:CDS |
| AGGGGAATCAGGCAAGTAAA+TGG | 0.390137 | 2.1:+17173810 | MS.gene35314:CDS |
| TGAAATCACCCAGGACCATT+TGG | 0.414766 | 2.1:-17174071 | None:intergenic |
| TGAGAATGGAAAACTCCTTC+GGG | 0.415866 | 2.1:+17173996 | MS.gene35314:CDS |
| CAAGGTGTGATCAAAGATTC+GGG | 0.420500 | 2.1:+17173761 | MS.gene35314:CDS |
| AAGGATAACGATGTTGTTGT+TGG | 0.429532 | 2.1:+17173419 | MS.gene35314:CDS |
| GATTATACTTACCTTGAGAA+TGG | 0.429569 | 2.1:+17173982 | MS.gene35314:CDS |
| ATGTTGTTGAAAGGGAAAAT+GGG | 0.431646 | 2.1:+17173468 | MS.gene35314:CDS |
| CTCTGATAGTTGGTGGGAAA+AGG | 0.434745 | 2.1:+17173385 | MS.gene35314:CDS |
| AAAAGAAGAGGATGCGCTCT+TGG | 0.439362 | 2.1:+17174315 | MS.gene35314:CDS |
| ATGGGGTTTCTGGGGTTTCG+CGG | 0.444414 | 2.1:+17173486 | MS.gene35314:CDS |
| ACTTCTTCCAAGAAAATAAG+AGG | 0.454192 | 2.1:+17174396 | MS.gene35314:CDS |
| TTGAGAATGGAAAACTCCTT+CGG | 0.454228 | 2.1:+17173995 | MS.gene35314:CDS |
| GGCGCGTAAACCGGGAGAAA+AGG | 0.458730 | 2.1:+17173733 | MS.gene35314:intron |
| GATGTGTAGGCGCGTAAACC+GGG | 0.460301 | 2.1:+17173725 | MS.gene35314:intron |
| AGAAGATCCTTCACCTTGAC+AGG | 0.462800 | 2.1:-17173536 | None:intergenic |
| ATCCAACGGAAGACTTGAAC+AGG | 0.468127 | 2.1:-17174031 | None:intergenic |
| TAAAGAGGTCCAAATGGTCC+TGG | 0.476200 | 2.1:+17174062 | MS.gene35314:CDS |
| GTCTCTTTCAACTCCAAGCA+TGG | 0.477435 | 2.1:-17174270 | None:intergenic |
| TTATGGTGAAGCCTGGTAAG+AGG | 0.482687 | 2.1:+17173510 | MS.gene35314:CDS |
| TCAGTGCATGGAACAATTGA+CGG | 0.496206 | 2.1:+17175279 | MS.gene35314:CDS |
| GTTGGATACATTGGATAAAG+AGG | 0.497086 | 2.1:+17174047 | MS.gene35314:CDS |
| TGCTGCTAATGTTGTTGAAA+GGG | 0.499182 | 2.1:+17173460 | MS.gene35314:CDS |
| AAGTCTTCCGTTGGATACAT+TGG | 0.504489 | 2.1:+17174038 | MS.gene35314:CDS |
| TTCTCAAGGTAAGTATAATC+CGG | 0.505601 | 2.1:-17173979 | None:intergenic |
| GGAAAAGGATGAAGAAATCA+AGG | 0.509720 | 2.1:+17173400 | MS.gene35314:CDS |
| TGAAGGGAGGCTCTGATAGT+TGG | 0.515467 | 2.1:+17173375 | MS.gene35314:CDS |
| ATTGGATAAAGAGGTCCAAA+TGG | 0.516952 | 2.1:+17174056 | MS.gene35314:CDS |
| CTGGCTACTGGGATTCTGGA+GGG | 0.517418 | 2.1:+17173557 | MS.gene35314:CDS |
| TCGCGGATTATGGTGAAGCC+TGG | 0.518339 | 2.1:+17173503 | MS.gene35314:CDS |
| ACTAGTATGCAATCCATGCT+TGG | 0.518517 | 2.1:+17174257 | MS.gene35314:CDS |
| TGTTGTTGAAAGGGAAAATG+GGG | 0.518988 | 2.1:+17173469 | MS.gene35314:CDS |
| TAGTGCTAGTAAACGTCCTC+CGG | 0.529930 | 2.1:+17173960 | MS.gene35314:intron |
| TGCCTGTTCAAGTCTTCCGT+TGG | 0.532331 | 2.1:+17174029 | MS.gene35314:CDS |
| TTGACAGGAAACCTCTTACC+AGG | 0.534154 | 2.1:-17173521 | None:intergenic |
| TGAAGGATCTTCTGGCTACT+GGG | 0.535951 | 2.1:+17173546 | MS.gene35314:CDS |
| GAGTTGAAAGAGACTTCTGC+AGG | 0.538190 | 2.1:+17174279 | MS.gene35314:CDS |
| AATATTTGTTTCAACTGCAG+AGG | 0.546957 | 2.1:+17174108 | MS.gene35314:CDS |
| AGGGAGGCTCTGATAGTTGG+TGG | 0.551590 | 2.1:+17173378 | MS.gene35314:CDS |
| TTGCTGCTAATGTTGTTGAA+AGG | 0.552470 | 2.1:+17173459 | MS.gene35314:CDS |
| TGGTAAGAGGTTTCCTGTCA+AGG | 0.557637 | 2.1:+17173523 | MS.gene35314:CDS |
| CTTTCAGCTGTTCAGAACCT+AGG | 0.564909 | 2.1:-17175335 | None:intergenic |
| CCGGGAGAAAAGGATTTACA+AGG | 0.568192 | 2.1:+17173743 | MS.gene35314:CDS |
| TCTGGCTACTGGGATTCTGG+AGG | 0.573761 | 2.1:+17173556 | MS.gene35314:CDS |
| ATTGAAAGTGAGATATGTCA+AGG | 0.573844 | 2.1:+17173580 | MS.gene35314:CDS |
| GTCAATTTCTGAATCTAACA+AGG | 0.573857 | 2.1:+17174224 | MS.gene35314:CDS |
| TATATAGTCACGGTGGACCT+AGG | 0.575051 | 2.1:+17175318 | MS.gene35314:CDS |
| GAAGAACCGAGTGTCTGTGC+TGG | 0.576107 | 2.1:-17175258 | None:intergenic |
| TCTTGTGACCAAACAATGAA+GGG | 0.576525 | 2.1:+17173359 | None:intergenic |
| CAGTGCATGGAACAATTGAC+GGG | 0.580953 | 2.1:+17175280 | MS.gene35314:CDS |
| CTAGGTTCTGAACAGCTGAA+AGG | 0.587604 | 2.1:+17175336 | MS.gene35314:CDS |
| CAGGCAAGTAAATGGAGGGA+TGG | 0.589865 | 2.1:+17173818 | MS.gene35314:CDS |
| GAGATATGTCAAGGGACAGA+AGG | 0.592127 | 2.1:+17173589 | MS.gene35314:CDS |
| ACTTCTTCCAAGAAAAGAAG+AGG | 0.593684 | 2.1:+17174303 | MS.gene35314:CDS |
| GGAATCAGGCAAGTAAATGG+AGG | 0.597083 | 2.1:+17173813 | MS.gene35314:CDS |
| AAAGAGGTCCAAATGGTCCT+GGG | 0.599169 | 2.1:+17174063 | MS.gene35314:CDS |
| GAGGTTTCCTGTCAAGGTGA+AGG | 0.604010 | 2.1:+17173529 | MS.gene35314:CDS |
| AAGGGAAAATGGGGTTTCTG+GGG | 0.606981 | 2.1:+17173478 | MS.gene35314:CDS |
| GGGAGGCTCTGATAGTTGGT+GGG | 0.621581 | 2.1:+17173379 | MS.gene35314:CDS |
| ATTGACGGGAAATTTGATGA+CGG | 0.626327 | 2.1:+17175294 | MS.gene35314:CDS |
| ACACTCGGTTCTTCAGTGCA+TGG | 0.628634 | 2.1:+17175267 | MS.gene35314:CDS |
| ATTAGTCCAGCACAGACACT+CGG | 0.635032 | 2.1:+17175252 | MS.gene35314:CDS |
| GAATCAGGCAAGTAAATGGA+GGG | 0.637456 | 2.1:+17173814 | MS.gene35314:CDS |
| TCTTTATCCAATGTATCCAA+CGG | 0.644524 | 2.1:-17174045 | None:intergenic |
| TCAATTTCTGAATCTAACAA+GGG | 0.669663 | 2.1:+17174225 | MS.gene35314:CDS |
| TTGAAAGTGAGATATGTCAA+GGG | 0.671458 | 2.1:+17173581 | MS.gene35314:CDS |
| TGATGACGGATATATAGTCA+CGG | 0.676944 | 2.1:+17175308 | MS.gene35314:CDS |
| AGGCATTCATGACATCCCGA+AGG | 0.693693 | 2.1:-17174011 | None:intergenic |
| TCAAGGTAAGTATAATCCGG+AGG | 0.695456 | 2.1:-17173976 | None:intergenic |
| TGTGACCAAACAATGAAGGG+AGG | 0.703036 | 2.1:+17173362 | None:intergenic |
| ACTGCATCGTGAAATCACCC+AGG | 0.738983 | 2.1:-17174080 | None:intergenic |
| TGACGGATATATAGTCACGG+TGG | 0.799576 | 2.1:+17175311 | MS.gene35314:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTACAAGTTTAATCAAA+AGG | - | chr2.1:17174186-17174205 | None:intergenic | 15.0% |
| !!! | GTTTTGAACTTTTTTGATTT+TGG | + | chr2.1:17173618-17173637 | MS.gene35314:intron | 20.0% |
| ! | AACAAAGTTCTTATCTATGT+TGG | + | chr2.1:17175166-17175185 | MS.gene35314:intron | 25.0% |
| ! | AACTAATGGAAACAACTTAT+AGG | + | chr2.1:17175012-17175031 | MS.gene35314:intron | 25.0% |
| ! | ATTATGACATCGTTTAATCT+GGG | + | chr2.1:17174827-17174846 | MS.gene35314:intron | 25.0% |
| ! | TCAAAAAATAAGAGAGAAGA+AGG | + | chr2.1:17174345-17174364 | MS.gene35314:CDS | 25.0% |
| ! | TCAATTTCTGAATCTAACAA+GGG | + | chr2.1:17174225-17174244 | MS.gene35314:CDS | 25.0% |
| ! | TTTATTCGTAAATGATGTGT+AGG | + | chr2.1:17173712-17173731 | MS.gene35314:intron | 25.0% |
| !! | TCGTTTCTTTAATTTAGACT+TGG | + | chr2.1:17174730-17174749 | MS.gene35314:intron | 25.0% |
| !! | TGAAATATTTTTCTGTGATG+TGG | + | chr2.1:17174569-17174588 | MS.gene35314:intron | 25.0% |
| !!! | AATTTTGATGAACTGTTTGT+AGG | + | chr2.1:17174201-17174220 | MS.gene35314:intron | 25.0% |
| !!! | ATTTTGATGAACTGTTTGTA+GGG | + | chr2.1:17174202-17174221 | MS.gene35314:intron | 25.0% |
| !!! | TATTCTTTTTTTGCTTGTGT+GGG | + | chr2.1:17173842-17173861 | MS.gene35314:CDS | 25.0% |
| !!! | TGATTCTTTTGTTTTGAAAC+TGG | + | chr2.1:17174674-17174693 | MS.gene35314:intron | 25.0% |
| !!! | TGTAATACCTCTTATTTTCT+TGG | - | chr2.1:17174406-17174425 | None:intergenic | 25.0% |
| !!! | TTATTCTTTTTTTGCTTGTG+TGG | + | chr2.1:17173841-17173860 | MS.gene35314:CDS | 25.0% |
| AATATTTGTTTCAACTGCAG+AGG | + | chr2.1:17174108-17174127 | MS.gene35314:CDS | 30.0% | |
| AATGTTGTTGAAAGGGAAAA+TGG | + | chr2.1:17173467-17173486 | MS.gene35314:CDS | 30.0% | |
| ACTTCTTCCAAGAAAATAAG+AGG | + | chr2.1:17174396-17174415 | MS.gene35314:CDS | 30.0% | |
| AGAAACGAATCATCTATGAA+TGG | - | chr2.1:17174718-17174737 | None:intergenic | 30.0% | |
| ATGTTGTTGAAAGGGAAAAT+GGG | + | chr2.1:17173468-17173487 | MS.gene35314:CDS | 30.0% | |
| ATTGAAAGTGAGATATGTCA+AGG | + | chr2.1:17173580-17173599 | MS.gene35314:CDS | 30.0% | |
| CATTATGACATCGTTTAATC+TGG | + | chr2.1:17174826-17174845 | MS.gene35314:intron | 30.0% | |
| GATTATACTTACCTTGAGAA+TGG | + | chr2.1:17173982-17174001 | MS.gene35314:CDS | 30.0% | |
| GGACGTATAGTCAATATTAT+TGG | - | chr2.1:17174475-17174494 | None:intergenic | 30.0% | |
| GTCAATTTCTGAATCTAACA+AGG | + | chr2.1:17174224-17174243 | MS.gene35314:CDS | 30.0% | |
| GTGAAATTGAGAATGATGTT+CGG | + | chr2.1:17173649-17173668 | MS.gene35314:intron | 30.0% | |
| TCTTTATCCAATGTATCCAA+CGG | - | chr2.1:17174048-17174067 | None:intergenic | 30.0% | |
| TTCTCAAGGTAAGTATAATC+CGG | - | chr2.1:17173982-17174001 | None:intergenic | 30.0% | |
| TTGAAAGTGAGATATGTCAA+GGG | + | chr2.1:17173581-17173600 | MS.gene35314:CDS | 30.0% | |
| !!! | GAACTTTTTTGATTTTGGTC+TGG | + | chr2.1:17173623-17173642 | MS.gene35314:intron | 30.0% |
| !!! | TGTTGTTTTTTGTTGAGAGT+AGG | + | chr2.1:17173903-17173922 | MS.gene35314:intron | 30.0% |
| !!! | TTCTGCAGAAGTAGTTTTTT+CGG | - | chr2.1:17174376-17174395 | None:intergenic | 30.0% |
| AAACTCTCCTAGAGAACTAA+TGG | + | chr2.1:17174998-17175017 | MS.gene35314:intron | 35.0% | |
| AAGGATAACGATGTTGTTGT+TGG | + | chr2.1:17173419-17173438 | MS.gene35314:CDS | 35.0% | |
| AATTACATAGTGTCACAGCT+AGG | - | chr2.1:17174157-17174176 | None:intergenic | 35.0% | |
| ACAAGGTGTGATCAAAGATT+CGG | + | chr2.1:17173760-17173779 | MS.gene35314:CDS | 35.0% | |
| ACTTCTTCCAAGAAAAGAAG+AGG | + | chr2.1:17174303-17174322 | MS.gene35314:CDS | 35.0% | |
| ATGTATACCCTAACTCATGA+TGG | - | chr2.1:17174496-17174515 | None:intergenic | 35.0% | |
| ATTGACGGGAAATTTGATGA+CGG | + | chr2.1:17175294-17175313 | MS.gene35314:CDS | 35.0% | |
| ATTGGATAAAGAGGTCCAAA+TGG | + | chr2.1:17174056-17174075 | MS.gene35314:CDS | 35.0% | |
| ATTTACTGCCATAAGCACAT+AGG | + | chr2.1:17174901-17174920 | MS.gene35314:intron | 35.0% | |
| GCATGCAACTCAAAAACATT+CGG | - | chr2.1:17173937-17173956 | None:intergenic | 35.0% | |
| GGAAAAGGATGAAGAAATCA+AGG | + | chr2.1:17173400-17173419 | MS.gene35314:CDS | 35.0% | |
| GTGATGTGGAAATAGAAGTA+AGG | + | chr2.1:17174583-17174602 | MS.gene35314:intron | 35.0% | |
| GTTGGATACATTGGATAAAG+AGG | + | chr2.1:17174047-17174066 | MS.gene35314:CDS | 35.0% | |
| TATACGTCCATCATGAGTTA+GGG | + | chr2.1:17174486-17174505 | MS.gene35314:intron | 35.0% | |
| TCTATCATAAGTTGTGTCGA+TGG | - | chr2.1:17174805-17174824 | None:intergenic | 35.0% | |
| TGCTGCTAATGTTGTTGAAA+GGG | + | chr2.1:17173460-17173479 | MS.gene35314:CDS | 35.0% | |
| TGTTGTTGAAAGGGAAAATG+GGG | + | chr2.1:17173469-17173488 | MS.gene35314:CDS | 35.0% | |
| TTGAGAATGGAAAACTCCTT+CGG | + | chr2.1:17173995-17174014 | MS.gene35314:CDS | 35.0% | |
| TTGCTGCTAATGTTGTTGAA+AGG | + | chr2.1:17173459-17173478 | MS.gene35314:CDS | 35.0% | |
| ! | GTTGTTTCCATTAGTTCTCT+AGG | - | chr2.1:17175008-17175027 | None:intergenic | 35.0% |
| !! | TGATGACGGATATATAGTCA+CGG | + | chr2.1:17175308-17175327 | MS.gene35314:CDS | 35.0% |
| !!! | AATGTTTTTGAGTTGCATGC+TGG | + | chr2.1:17173937-17173956 | MS.gene35314:intron | 35.0% |
| !!! | GAGTTTTGGTTGACTTCTTT+TGG | + | chr2.1:17174611-17174630 | MS.gene35314:intron | 35.0% |
| !!! | GGATTTTTTTCCCTATCTTG+TGG | + | chr2.1:17173670-17173689 | MS.gene35314:intron | 35.0% |
| AAAGGGAAAATGGGGTTTCT+GGG | + | chr2.1:17173477-17173496 | MS.gene35314:CDS | 40.0% | |
| AACAGTCACCTATGTGCTTA+TGG | - | chr2.1:17174912-17174931 | None:intergenic | 40.0% | |
| AAGCACATAGGTGACTGTTT+GGG | + | chr2.1:17174913-17174932 | MS.gene35314:intron | 40.0% | |
| AAGTCTTCCGTTGGATACAT+TGG | + | chr2.1:17174038-17174057 | MS.gene35314:CDS | 40.0% | |
| ACACTAATGCACCACAAGAT+AGG | - | chr2.1:17173684-17173703 | None:intergenic | 40.0% | |
| ACTAGTATGCAATCCATGCT+TGG | + | chr2.1:17174257-17174276 | MS.gene35314:CDS | 40.0% | |
| CAAGGTGTGATCAAAGATTC+GGG | + | chr2.1:17173761-17173780 | MS.gene35314:CDS | 40.0% | |
| CACTAATGCACCACAAGATA+GGG | - | chr2.1:17173683-17173702 | None:intergenic | 40.0% | |
| CTATACGTCCATCATGAGTT+AGG | + | chr2.1:17174485-17174504 | MS.gene35314:intron | 40.0% | |
| GAATCAGGCAAGTAAATGGA+GGG | + | chr2.1:17173814-17173833 | MS.gene35314:CDS | 40.0% | |
| TAAGCACATAGGTGACTGTT+TGG | + | chr2.1:17174912-17174931 | MS.gene35314:intron | 40.0% | |
| TCAAGGTAAGTATAATCCGG+AGG | - | chr2.1:17173979-17173998 | None:intergenic | 40.0% | |
| TCAGTGCATGGAACAATTGA+CGG | + | chr2.1:17175279-17175298 | MS.gene35314:CDS | 40.0% | |
| TGAGAATGGAAAACTCCTTC+GGG | + | chr2.1:17173996-17174015 | MS.gene35314:CDS | 40.0% | |
| TTGGGAGAGCTTATGGATAT+TGG | + | chr2.1:17174931-17174950 | MS.gene35314:intron | 40.0% | |
| ! | ATCGAAAGCTTTATCGCACT+AGG | - | chr2.1:17174865-17174884 | None:intergenic | 40.0% |
| ! | CCTTGTAAATCCTTTTCTCC+CGG | - | chr2.1:17173746-17173765 | None:intergenic | 40.0% |
| ! | CGGGAATTTTGTGCTTTTGT+GGG | + | chr2.1:17173780-17173799 | MS.gene35314:CDS | 40.0% |
| ! | GAAGGAGTTTTCCATTCTCA+AGG | - | chr2.1:17173996-17174015 | None:intergenic | 40.0% |
| ! | TCGGGAATTTTGTGCTTTTG+TGG | + | chr2.1:17173779-17173798 | MS.gene35314:CDS | 40.0% |
| ! | TGCTTTTGTGGGAGTTGTAA+GGG | + | chr2.1:17173791-17173810 | MS.gene35314:CDS | 40.0% |
| !! | GAAGTAAGGAGCATGAGTTT+TGG | + | chr2.1:17174597-17174616 | MS.gene35314:intron | 40.0% |
| !!! | GCAGAAGTAGTTTTTTCGGA+AGG | - | chr2.1:17174372-17174391 | None:intergenic | 40.0% |
| AAAAGAAGAGGATGCGCTCT+TGG | + | chr2.1:17174315-17174334 | MS.gene35314:CDS | 45.0% | |
| AAAGAGGTCCAAATGGTCCT+GGG | + | chr2.1:17174063-17174082 | MS.gene35314:CDS | 45.0% | |
| AAGGGAAAATGGGGTTTCTG+GGG | + | chr2.1:17173478-17173497 | MS.gene35314:CDS | 45.0% | |
| AGAAGATCCTTCACCTTGAC+AGG | - | chr2.1:17173539-17173558 | None:intergenic | 45.0% | |
| AGGGGAATCAGGCAAGTAAA+TGG | + | chr2.1:17173810-17173829 | MS.gene35314:CDS | 45.0% | |
| AGTGTCTGTGCTGGACTAAT+TGG | - | chr2.1:17175252-17175271 | None:intergenic | 45.0% | |
| ATCCAACGGAAGACTTGAAC+AGG | - | chr2.1:17174034-17174053 | None:intergenic | 45.0% | |
| ATTAGTCCAGCACAGACACT+CGG | + | chr2.1:17175252-17175271 | MS.gene35314:CDS | 45.0% | |
| CAGTGCATGGAACAATTGAC+GGG | + | chr2.1:17175280-17175299 | MS.gene35314:CDS | 45.0% | |
| CCGGGAGAAAAGGATTTACA+AGG | + | chr2.1:17173743-17173762 | MS.gene35314:CDS | 45.0% | |
| CTTTCAGCTGTTCAGAACCT+AGG | - | chr2.1:17175338-17175357 | None:intergenic | 45.0% | |
| GAAAGGGAAAATGGGGTTTC+TGG | + | chr2.1:17173476-17173495 | MS.gene35314:CDS | 45.0% | |
| GAGATATGTCAAGGGACAGA+AGG | + | chr2.1:17173589-17173608 | MS.gene35314:CDS | 45.0% | |
| GAGTTGAAAGAGACTTCTGC+AGG | + | chr2.1:17174279-17174298 | MS.gene35314:CDS | 45.0% | |
| GGAATCAGGCAAGTAAATGG+AGG | + | chr2.1:17173813-17173832 | MS.gene35314:CDS | 45.0% | |
| GTCTCTTTCAACTCCAAGCA+TGG | - | chr2.1:17174273-17174292 | None:intergenic | 45.0% | |
| GTGTGGGTTTAGCATCTTGT+AGG | + | chr2.1:17173858-17173877 | MS.gene35314:CDS | 45.0% | |
| TAAAGAGGTCCAAATGGTCC+TGG | + | chr2.1:17174062-17174081 | MS.gene35314:CDS | 45.0% | |
| TAGTGCTAGTAAACGTCCTC+CGG | + | chr2.1:17173960-17173979 | MS.gene35314:intron | 45.0% | |
| TATATAGTCACGGTGGACCT+AGG | + | chr2.1:17175318-17175337 | MS.gene35314:CDS | 45.0% | |
| TGAAATCACCCAGGACCATT+TGG | - | chr2.1:17174074-17174093 | None:intergenic | 45.0% | |
| TGACTGTTTGGGAGAGCTTA+TGG | + | chr2.1:17174924-17174943 | MS.gene35314:intron | 45.0% | |
| TGGTAAGAGGTTTCCTGTCA+AGG | + | chr2.1:17173523-17173542 | MS.gene35314:CDS | 45.0% | |
| TGTCAAGGTGAAGGATCTTC+TGG | + | chr2.1:17173538-17173557 | MS.gene35314:CDS | 45.0% | |
| TTATGGTGAAGCCTGGTAAG+AGG | + | chr2.1:17173510-17173529 | MS.gene35314:CDS | 45.0% | |
| TTGACAGGAAACCTCTTACC+AGG | - | chr2.1:17173524-17173543 | None:intergenic | 45.0% | |
| ! | AGCGCATCCTCTTCTTTTCT+TGG | - | chr2.1:17174313-17174332 | None:intergenic | 45.0% |
| ! | GCTTTTGTGGGAGTTGTAAG+GGG | + | chr2.1:17173792-17173811 | MS.gene35314:CDS | 45.0% |
| ! | GTGCTTTTGTGGGAGTTGTA+AGG | + | chr2.1:17173790-17173809 | MS.gene35314:CDS | 45.0% |
| ! | TGAAGGATCTTCTGGCTACT+GGG | + | chr2.1:17173546-17173565 | MS.gene35314:CDS | 45.0% |
| ! | TGACGGATATATAGTCACGG+TGG | + | chr2.1:17175311-17175330 | MS.gene35314:CDS | 45.0% |
| !! | CTAGGTTCTGAACAGCTGAA+AGG | + | chr2.1:17175336-17175355 | MS.gene35314:CDS | 45.0% |
| !! | CTCTGATAGTTGGTGGGAAA+AGG | + | chr2.1:17173385-17173404 | MS.gene35314:CDS | 45.0% |
| ACACTCGGTTCTTCAGTGCA+TGG | + | chr2.1:17175267-17175286 | MS.gene35314:CDS | 50.0% | |
| ACTGCATCGTGAAATCACCC+AGG | - | chr2.1:17174083-17174102 | None:intergenic | 50.0% | |
| AGAGGATGCGCTCTTGGTTT+CGG | + | chr2.1:17174321-17174340 | MS.gene35314:CDS | 50.0% | |
| AGGCATTCATGACATCCCGA+AGG | - | chr2.1:17174014-17174033 | None:intergenic | 50.0% | |
| CAGGCAAGTAAATGGAGGGA+TGG | + | chr2.1:17173818-17173837 | MS.gene35314:CDS | 50.0% | |
| GAGGTTTCCTGTCAAGGTGA+AGG | + | chr2.1:17173529-17173548 | MS.gene35314:CDS | 50.0% | |
| TGATGTGTAGGCGCGTAAAC+CGG | + | chr2.1:17173724-17173743 | MS.gene35314:intron | 50.0% | |
| TGCCTGTTCAAGTCTTCCGT+TGG | + | chr2.1:17174029-17174048 | MS.gene35314:CDS | 50.0% | |
| TGGGAGTTGTAAGGGGAATC+AGG | + | chr2.1:17173799-17173818 | MS.gene35314:CDS | 50.0% | |
| ! | GTGAAGGATCTTCTGGCTAC+TGG | + | chr2.1:17173545-17173564 | MS.gene35314:CDS | 50.0% |
| ! | TCTTCTGGCTACTGGGATTC+TGG | + | chr2.1:17173553-17173572 | MS.gene35314:CDS | 50.0% |
| ! | TGAAGGGAGGCTCTGATAGT+TGG | + | chr2.1:17173375-17173394 | MS.gene35314:CDS | 50.0% |
| !! | TTCTGGGGTTTCGCGGATTA+TGG | + | chr2.1:17173493-17173512 | MS.gene35314:CDS | 50.0% |
| CTGGCTACTGGGATTCTGGA+GGG | + | chr2.1:17173557-17173576 | MS.gene35314:CDS | 55.0% | |
| GAAGAACCGAGTGTCTGTGC+TGG | - | chr2.1:17175261-17175280 | None:intergenic | 55.0% | |
| GATGTGTAGGCGCGTAAACC+GGG | + | chr2.1:17173725-17173744 | MS.gene35314:intron | 55.0% | |
| TCTGGCTACTGGGATTCTGG+AGG | + | chr2.1:17173556-17173575 | MS.gene35314:CDS | 55.0% | |
| ! | AGGGAGGCTCTGATAGTTGG+TGG | + | chr2.1:17173378-17173397 | MS.gene35314:CDS | 55.0% |
| ! | GGGAGGCTCTGATAGTTGGT+GGG | + | chr2.1:17173379-17173398 | MS.gene35314:CDS | 55.0% |
| ! | TCGCGGATTATGGTGAAGCC+TGG | + | chr2.1:17173503-17173522 | MS.gene35314:CDS | 55.0% |
| !! | ATGGGGTTTCTGGGGTTTCG+CGG | + | chr2.1:17173486-17173505 | MS.gene35314:CDS | 55.0% |
| GGCGCGTAAACCGGGAGAAA+AGG | + | chr2.1:17173733-17173752 | MS.gene35314:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.1 | gene | 17173374 | 17175377 | 17173374 | ID=MS.gene35314 |
| chr2.1 | mRNA | 17173374 | 17175377 | 17173374 | ID=MS.gene35314.t1;Parent=MS.gene35314 |
| chr2.1 | exon | 17173374 | 17173610 | 17173374 | ID=MS.gene35314.t1.exon1;Parent=MS.gene35314.t1 |
| chr2.1 | CDS | 17173374 | 17173610 | 17173374 | ID=cds.MS.gene35314.t1;Parent=MS.gene35314.t1 |
| chr2.1 | exon | 17173734 | 17173879 | 17173734 | ID=MS.gene35314.t1.exon2;Parent=MS.gene35314.t1 |
| chr2.1 | CDS | 17173734 | 17173879 | 17173734 | ID=cds.MS.gene35314.t1;Parent=MS.gene35314.t1 |
| chr2.1 | exon | 17173963 | 17174129 | 17173963 | ID=MS.gene35314.t1.exon3;Parent=MS.gene35314.t1 |
| chr2.1 | CDS | 17173963 | 17174129 | 17173963 | ID=cds.MS.gene35314.t1;Parent=MS.gene35314.t1 |
| chr2.1 | exon | 17174223 | 17174417 | 17174223 | ID=MS.gene35314.t1.exon4;Parent=MS.gene35314.t1 |
| chr2.1 | CDS | 17174223 | 17174417 | 17174223 | ID=cds.MS.gene35314.t1;Parent=MS.gene35314.t1 |
| chr2.1 | exon | 17175244 | 17175377 | 17175244 | ID=MS.gene35314.t1.exon5;Parent=MS.gene35314.t1 |
| chr2.1 | CDS | 17175244 | 17175377 | 17175244 | ID=cds.MS.gene35314.t1;Parent=MS.gene35314.t1 |
| Gene Sequence |
| Protein sequence |
