Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35557.t1 | RHN75483.1 | 96.5 | 316 | 11 | 0 | 1 | 316 | 40 | 355 | 6.50E-159 | 570.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35557.t1 | Q9XIN7 | 43.1 | 239 | 83 | 5 | 1 | 236 | 62 | 250 | 1.3e-43 | 178.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35557.t1 | G7IHH0 | 96.5 | 316 | 11 | 0 | 1 | 316 | 66 | 381 | 4.7e-159 | 570.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049222 | MS.gene35557 | -0.813378 | 2.64E-51 | -1.69E-46 |
| MS.gene050170 | MS.gene35557 | -0.831102 | 2.02E-55 | -1.69E-46 |
| MS.gene050323 | MS.gene35557 | -0.811882 | 5.61E-51 | -1.69E-46 |
| MS.gene050496 | MS.gene35557 | -0.802971 | 4.36E-49 | -1.69E-46 |
| MS.gene050518 | MS.gene35557 | -0.807492 | 4.92E-50 | -1.69E-46 |
| MS.gene050868 | MS.gene35557 | -0.806437 | 8.23E-50 | -1.69E-46 |
| MS.gene050871 | MS.gene35557 | -0.80036 | 1.49E-48 | -1.69E-46 |
| MS.gene050876 | MS.gene35557 | -0.800639 | 1.31E-48 | -1.69E-46 |
| MS.gene050904 | MS.gene35557 | -0.871082 | 8.96E-67 | -1.69E-46 |
| MS.gene051317 | MS.gene35557 | -0.841244 | 5.34E-58 | -1.69E-46 |
| MS.gene052482 | MS.gene35557 | -0.808057 | 3.73E-50 | -1.69E-46 |
| MS.gene052486 | MS.gene35557 | -0.811642 | 6.32E-51 | -1.69E-46 |
| MS.gene05470 | MS.gene35557 | -0.808455 | 3.07E-50 | -1.69E-46 |
| MS.gene054954 | MS.gene35557 | -0.800679 | 1.29E-48 | -1.69E-46 |
| MS.gene055502 | MS.gene35557 | -0.802313 | 5.95E-49 | -1.69E-46 |
| MS.gene055748 | MS.gene35557 | -0.810748 | 9.88E-51 | -1.69E-46 |
| MS.gene055751 | MS.gene35557 | -0.819536 | 1.10E-52 | -1.69E-46 |
| MS.gene05589 | MS.gene35557 | -0.835749 | 1.40E-56 | -1.69E-46 |
| MS.gene056504 | MS.gene35557 | -0.827313 | 1.68E-54 | -1.69E-46 |
| MS.gene056510 | MS.gene35557 | -0.800454 | 1.43E-48 | -1.69E-46 |
| MS.gene056618 | MS.gene35557 | 0.833112 | 6.43E-56 | -1.69E-46 |
| MS.gene058334 | MS.gene35557 | 0.834167 | 3.50E-56 | -1.69E-46 |
| MS.gene059023 | MS.gene35557 | -0.813362 | 2.66E-51 | -1.69E-46 |
| MS.gene05912 | MS.gene35557 | -0.802971 | 4.36E-49 | -1.69E-46 |
| MS.gene059526 | MS.gene35557 | 0.81888 | 1.56E-52 | -1.69E-46 |
| MS.gene059865 | MS.gene35557 | -0.802594 | 5.21E-49 | -1.69E-46 |
| MS.gene06000 | MS.gene35557 | -0.801666 | 8.09E-49 | -1.69E-46 |
| MS.gene06042 | MS.gene35557 | 0.825945 | 3.55E-54 | -1.69E-46 |
| MS.gene060595 | MS.gene35557 | 0.807066 | 6.06E-50 | -1.69E-46 |
| MS.gene060762 | MS.gene35557 | -0.831211 | 1.90E-55 | -1.69E-46 |
| MS.gene06077 | MS.gene35557 | -0.820576 | 6.38E-53 | -1.69E-46 |
| MS.gene060823 | MS.gene35557 | 0.811953 | 5.41E-51 | -1.69E-46 |
| MS.gene060982 | MS.gene35557 | -0.82338 | 1.43E-53 | -1.69E-46 |
| MS.gene061044 | MS.gene35557 | 0.817274 | 3.59E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 61 sgRNAs with CRISPR-Local
Find 86 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTCACGGCTATATTATTT+TGG | 0.224338 | 2.3:+12090229 | MS.gene35557:CDS |
| AAATATTGTAGGAAAATTTC+AGG | 0.231634 | 2.3:+12090281 | MS.gene35557:CDS |
| TGAGAATGTGCAAGGTTATT+TGG | 0.272129 | 2.3:-12090045 | None:intergenic |
| TCACTTTCATGTGAATTTAC+TGG | 0.292583 | 2.3:-12089581 | None:intergenic |
| CACAACGGAGAATACGATTA+AGG | 0.296370 | 2.3:+12090085 | MS.gene35557:CDS |
| CATTCTGTCCTTTCACCCTT+AGG | 0.318522 | 2.3:-12089292 | None:intergenic |
| CATCAAACGATTGGTCATTC+TGG | 0.319286 | 2.3:-12090184 | None:intergenic |
| AAAAGAGCGCAACGTGAAAT+CGG | 0.320485 | 2.3:+12089216 | MS.gene35557:CDS |
| ATGTATGTTTCAGGATTCTT+TGG | 0.329361 | 2.3:+12089439 | MS.gene35557:intron |
| ATAACTGCTGCTTCCCCGTT+TGG | 0.351801 | 2.3:-12089681 | None:intergenic |
| CAGTTATGGTTCAGCTTCAA+TGG | 0.373075 | 2.3:+12089697 | MS.gene35557:CDS |
| GAGCTACTGACTGTGGCTAT+TGG | 0.383824 | 2.3:+12089182 | MS.gene35557:CDS |
| TCACTTAGGTCGTGCACCTA+AGG | 0.393121 | 2.3:+12089276 | MS.gene35557:CDS |
| CACTTTCATGTGAATTTACT+GGG | 0.402866 | 2.3:-12089580 | None:intergenic |
| ATCTGATTGAATGAATGATT+TGG | 0.404293 | 2.3:-12089098 | None:intergenic |
| TTCTCCGTTGTGCAGTGCCT+TGG | 0.417997 | 2.3:-12090074 | None:intergenic |
| AAACAAGTTAGAAATATTGT+AGG | 0.438564 | 2.3:+12090270 | MS.gene35557:CDS |
| AAATCGGGTTCTAATGTCAT+AGG | 0.442652 | 2.3:+12089232 | MS.gene35557:CDS |
| AAAGAGCGCAACGTGAAATC+GGG | 0.454109 | 2.3:+12089217 | MS.gene35557:CDS |
| CGAACTTTGGTGTTTCACTT+AGG | 0.463686 | 2.3:+12089262 | MS.gene35557:CDS |
| ATTGTTATGCTGAGATACTA+AGG | 0.473886 | 2.3:+12089968 | MS.gene35557:CDS |
| GGTTGATGGTAGTTCCAAAC+GGG | 0.476342 | 2.3:+12089667 | MS.gene35557:CDS |
| AGCAAATATCATCAAACGAT+TGG | 0.476940 | 2.3:-12090193 | None:intergenic |
| AAACGGGGAAGCAGCAGTTA+TGG | 0.485441 | 2.3:+12089683 | MS.gene35557:CDS |
| TCTGGCAAAGAAGCTACTCT+TGG | 0.501988 | 2.3:-12090166 | None:intergenic |
| ACAACGGAGAATACGATTAA+GGG | 0.503506 | 2.3:+12090086 | MS.gene35557:CDS |
| GAACAAGAAAAGGAGGTTGA+TGG | 0.507935 | 2.3:+12089653 | MS.gene35557:CDS |
| CGGTACTGATCATAGAGAAA+GGG | 0.508013 | 2.3:+12089622 | MS.gene35557:CDS |
| AGACTCTTCGGGCCAGCTAA+AGG | 0.513022 | 2.3:+12089778 | MS.gene35557:CDS |
| GGGTGTCTGCGAACAAGAAA+AGG | 0.514695 | 2.3:+12089643 | MS.gene35557:CDS |
| CATAGGTACAAAGCGAACTT+TGG | 0.517811 | 2.3:+12089249 | MS.gene35557:CDS |
| CACTTAGGTCGTGCACCTAA+GGG | 0.525784 | 2.3:+12089277 | MS.gene35557:CDS |
| TCACTTTCATGTGAATGTAC+AGG | 0.533418 | 2.3:-12089539 | None:intergenic |
| GCGGTACTGATCATAGAGAA+AGG | 0.535249 | 2.3:+12089621 | MS.gene35557:CDS |
| CTGTGTCAGTGACAGGTCTC+CGG | 0.535633 | 2.3:+12089330 | MS.gene35557:CDS |
| CGTTGTGCAGTGCCTTGGCA+TGG | 0.537314 | 2.3:-12090069 | None:intergenic |
| TGGTTGTTTGTCGTCTCAAG+AGG | 0.540094 | 2.3:+12089459 | MS.gene35557:CDS |
| CGTGGAAGAAAATATCCAAA+TGG | 0.543612 | 2.3:+12089145 | MS.gene35557:CDS |
| AGGTTGATGGTAGTTCCAAA+CGG | 0.545938 | 2.3:+12089666 | MS.gene35557:CDS |
| ACGAGTACTGTGTCAGTGAC+AGG | 0.551156 | 2.3:+12089323 | MS.gene35557:CDS |
| TGTGGCTATTGGAAAGCCAC+TGG | 0.560417 | 2.3:+12089193 | MS.gene35557:CDS |
| CAAAGAAGCTACTCTTGGAC+TGG | 0.563143 | 2.3:-12090161 | None:intergenic |
| TGTTATGTAGATGGATGAAG+AGG | 0.570365 | 2.3:+12089945 | MS.gene35557:intron |
| GTCGTGCACCTAAGGGTGAA+AGG | 0.588146 | 2.3:+12089284 | MS.gene35557:CDS |
| CTAAGGGTGAAAGGACAGAA+TGG | 0.589250 | 2.3:+12089293 | MS.gene35557:CDS |
| GATGAATCATCAATGTCTCA+AGG | 0.597395 | 2.3:+12090009 | MS.gene35557:CDS |
| AGTGACTGTGCTATCTCAGA+AGG | 0.605478 | 2.3:+12089599 | MS.gene35557:CDS |
| TGGTTCTTCTTCTCTCCCCG+TGG | 0.613681 | 2.3:+12089127 | MS.gene35557:CDS |
| GCACATTCTCATCCATGCCA+AGG | 0.629279 | 2.3:+12090057 | MS.gene35557:CDS |
| GCTCCTGGTTGAGAATGTGT+TGG | 0.632511 | 2.3:-12090117 | None:intergenic |
| TCATTCAATCAGATAACGAG+TGG | 0.635826 | 2.3:+12089107 | MS.gene35557:CDS |
| GACTGTGCTATCTCAGAAGG+CGG | 0.647418 | 2.3:+12089602 | MS.gene35557:CDS |
| AATCAGCGACCAGCTAATGA+CGG | 0.647955 | 2.3:+12089746 | MS.gene35557:CDS |
| AGTAAAAGAGCTACTGACTG+TGG | 0.648863 | 2.3:+12089175 | MS.gene35557:CDS |
| GGTACTGATCATAGAGAAAG+GGG | 0.649597 | 2.3:+12089623 | MS.gene35557:CDS |
| TCACATGAAAGTGATTGTGC+TGG | 0.661055 | 2.3:+12089548 | MS.gene35557:CDS |
| AAACCAACACATTCTCAACC+AGG | 0.668307 | 2.3:+12090114 | MS.gene35557:CDS |
| TGTCTGCGAACAAGAAAAGG+AGG | 0.695006 | 2.3:+12089646 | MS.gene35557:CDS |
| GGCATGGATGAGAATGTGCA+AGG | 0.698005 | 2.3:-12090053 | None:intergenic |
| CATGCCAAGGCACTGCACAA+CGG | 0.707247 | 2.3:+12090070 | MS.gene35557:CDS |
| GTTGATGGTAGTTCCAAACG+GGG | 0.760252 | 2.3:+12089668 | MS.gene35557:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACAAGTTAGAAATATTGT+AGG | + | chr2.3:12090270-12090289 | MS.gene35557:CDS | 20.0% |
| !! | AAATATTGTAGGAAAATTTC+AGG | + | chr2.3:12090281-12090300 | MS.gene35557:CDS | 20.0% |
| !! | CATAACAATATCATCATAAA+AGG | - | chr2.3:12089932-12089951 | None:intergenic | 20.0% |
| !!! | ATATTATTTTGGTCTTCATT+TGG | + | chr2.3:12090240-12090259 | MS.gene35557:CDS | 20.0% |
| !!! | CTTGTTTTTTAACATTCATA+GGG | - | chr2.3:12089386-12089405 | None:intergenic | 20.0% |
| !!! | TCTTGTTTTTTAACATTCAT+AGG | - | chr2.3:12089387-12089406 | None:intergenic | 20.0% |
| ! | ATCTGATTGAATGAATGATT+TGG | - | chr2.3:12089101-12089120 | None:intergenic | 25.0% |
| ! | TGATGATATTGTTATGTAGA+TGG | + | chr2.3:12089936-12089955 | MS.gene35557:intron | 25.0% |
| !! | ATCAATTTTATACCTTTAGC+TGG | - | chr2.3:12089793-12089812 | None:intergenic | 25.0% |
| !!! | TTGTTTGTTATGTATGTTTC+AGG | + | chr2.3:12089430-12089449 | MS.gene35557:intron | 25.0% |
| AGCAAATATCATCAAACGAT+TGG | - | chr2.3:12090196-12090215 | None:intergenic | 30.0% | |
| ATGTATGTTTCAGGATTCTT+TGG | + | chr2.3:12089439-12089458 | MS.gene35557:intron | 30.0% | |
| ATTGTTATGCTGAGATACTA+AGG | + | chr2.3:12089968-12089987 | MS.gene35557:CDS | 30.0% | |
| CACTTTCATGTGAATTTACT+GGG | - | chr2.3:12089583-12089602 | None:intergenic | 30.0% | |
| TCACTTTCATGTGAATTTAC+TGG | - | chr2.3:12089584-12089603 | None:intergenic | 30.0% | |
| ! | ATTTGGATATTTTCTTCCAC+GGG | - | chr2.3:12089146-12089165 | None:intergenic | 30.0% |
| ! | CATTTGGATATTTTCTTCCA+CGG | - | chr2.3:12089147-12089166 | None:intergenic | 30.0% |
| ! | CTTTTACTTTGTGAACCATT+TGG | - | chr2.3:12089163-12089182 | None:intergenic | 30.0% |
| ! | TTTCTTCATTTTCACTCTCA+CGG | + | chr2.3:12090215-12090234 | MS.gene35557:CDS | 30.0% |
| ! | TTTTTAACATTCATAGGGAG+AGG | - | chr2.3:12089381-12089400 | None:intergenic | 30.0% |
| !!! | TTATTTTGGTCTTCATTTGG+TGG | + | chr2.3:12090243-12090262 | MS.gene35557:CDS | 30.0% |
| ACAACGGAGAATACGATTAA+GGG | + | chr2.3:12090086-12090105 | MS.gene35557:CDS | 35.0% | |
| ACATTCAGATTATTACCCAC+CGG | - | chr2.3:12089352-12089371 | None:intergenic | 35.0% | |
| CGTGGAAGAAAATATCCAAA+TGG | + | chr2.3:12089145-12089164 | MS.gene35557:CDS | 35.0% | |
| CGTGTAATGTACTCATTCTA+CGG | - | chr2.3:12089846-12089865 | None:intergenic | 35.0% | |
| GATGAATCATCAATGTCTCA+AGG | + | chr2.3:12090009-12090028 | MS.gene35557:CDS | 35.0% | |
| TCACTTTCATGTGAATGTAC+AGG | - | chr2.3:12089542-12089561 | None:intergenic | 35.0% | |
| TCATTCAATCAGATAACGAG+TGG | + | chr2.3:12089107-12089126 | MS.gene35557:CDS | 35.0% | |
| TGAGAATGTGCAAGGTTATT+TGG | - | chr2.3:12090048-12090067 | None:intergenic | 35.0% | |
| TGTTATGTAGATGGATGAAG+AGG | + | chr2.3:12089945-12089964 | MS.gene35557:intron | 35.0% | |
| ! | AAATCGGGTTCTAATGTCAT+AGG | + | chr2.3:12089232-12089251 | MS.gene35557:CDS | 35.0% |
| ! | CTAGATTCAGCTTTTTGCAT+CGG | + | chr2.3:12089878-12089897 | MS.gene35557:intron | 35.0% |
| ! | CTCTCACGGCTATATTATTT+TGG | + | chr2.3:12090229-12090248 | MS.gene35557:CDS | 35.0% |
| ! | TTTGGATATTTTCTTCCACG+GGG | - | chr2.3:12089145-12089164 | None:intergenic | 35.0% |
| AAACCAACACATTCTCAACC+AGG | + | chr2.3:12090114-12090133 | MS.gene35557:CDS | 40.0% | |
| CACAACGGAGAATACGATTA+AGG | + | chr2.3:12090085-12090104 | MS.gene35557:CDS | 40.0% | |
| CAGTTATGGTTCAGCTTCAA+TGG | + | chr2.3:12089697-12089716 | MS.gene35557:CDS | 40.0% | |
| CATAGGTACAAAGCGAACTT+TGG | + | chr2.3:12089249-12089268 | MS.gene35557:CDS | 40.0% | |
| GAACAAGAAAAGGAGGTTGA+TGG | + | chr2.3:12089653-12089672 | MS.gene35557:CDS | 40.0% | |
| GTCAAAAAACCGTCATTAGC+TGG | - | chr2.3:12089758-12089777 | None:intergenic | 40.0% | |
| TAACATTCATAGGGAGAGGA+AGG | - | chr2.3:12089377-12089396 | None:intergenic | 40.0% | |
| TCACATGAAAGTGATTGTGC+TGG | + | chr2.3:12089548-12089567 | MS.gene35557:CDS | 40.0% | |
| ! | AAAAGAGCGCAACGTGAAAT+CGG | + | chr2.3:12089216-12089235 | MS.gene35557:CDS | 40.0% |
| ! | AGTAAAAGAGCTACTGACTG+TGG | + | chr2.3:12089175-12089194 | MS.gene35557:CDS | 40.0% |
| ! | CATCAAACGATTGGTCATTC+TGG | - | chr2.3:12090187-12090206 | None:intergenic | 40.0% |
| !! | AGGTTGATGGTAGTTCCAAA+CGG | + | chr2.3:12089666-12089685 | MS.gene35557:CDS | 40.0% |
| !! | CGAACTTTGGTGTTTCACTT+AGG | + | chr2.3:12089262-12089281 | MS.gene35557:CDS | 40.0% |
| !! | CGGTACTGATCATAGAGAAA+GGG | + | chr2.3:12089622-12089641 | MS.gene35557:CDS | 40.0% |
| !! | GGTACTGATCATAGAGAAAG+GGG | + | chr2.3:12089623-12089642 | MS.gene35557:CDS | 40.0% |
| !!! | CGGTTTTTTGACAGACTCTT+CGG | + | chr2.3:12089766-12089785 | MS.gene35557:CDS | 40.0% |
| !!! | GGTTTTTTGACAGACTCTTC+GGG | + | chr2.3:12089767-12089786 | MS.gene35557:CDS | 40.0% |
| AATCAGCGACCAGCTAATGA+CGG | + | chr2.3:12089746-12089765 | MS.gene35557:CDS | 45.0% | |
| AGTGACTGTGCTATCTCAGA+AGG | + | chr2.3:12089599-12089618 | MS.gene35557:CDS | 45.0% | |
| CAAAGAAGCTACTCTTGGAC+TGG | - | chr2.3:12090164-12090183 | None:intergenic | 45.0% | |
| CATTCTGTCCTTTCACCCTT+AGG | - | chr2.3:12089295-12089314 | None:intergenic | 45.0% | |
| CTAAGGGTGAAAGGACAGAA+TGG | + | chr2.3:12089293-12089312 | MS.gene35557:CDS | 45.0% | |
| TCTGGCAAAGAAGCTACTCT+TGG | - | chr2.3:12090169-12090188 | None:intergenic | 45.0% | |
| TGGTTGTTTGTCGTCTCAAG+AGG | + | chr2.3:12089459-12089478 | MS.gene35557:CDS | 45.0% | |
| TGTCTGCGAACAAGAAAAGG+AGG | + | chr2.3:12089646-12089665 | MS.gene35557:CDS | 45.0% | |
| ! | AAAGAGCGCAACGTGAAATC+GGG | + | chr2.3:12089217-12089236 | MS.gene35557:CDS | 45.0% |
| !! | GCGGTACTGATCATAGAGAA+AGG | + | chr2.3:12089621-12089640 | MS.gene35557:CDS | 45.0% |
| !! | GGTTGATGGTAGTTCCAAAC+GGG | + | chr2.3:12089667-12089686 | MS.gene35557:CDS | 45.0% |
| !! | GTTGATGGTAGTTCCAAACG+GGG | + | chr2.3:12089668-12089687 | MS.gene35557:CDS | 45.0% |
| !! | GTTTTTGAGAAACGAGCTCC+TGG | - | chr2.3:12090135-12090154 | None:intergenic | 45.0% |
| AAACGGGGAAGCAGCAGTTA+TGG | + | chr2.3:12089683-12089702 | MS.gene35557:CDS | 50.0% | |
| CACTTAGGTCGTGCACCTAA+GGG | + | chr2.3:12089277-12089296 | MS.gene35557:CDS | 50.0% | |
| GACTGTGCTATCTCAGAAGG+CGG | + | chr2.3:12089602-12089621 | MS.gene35557:CDS | 50.0% | |
| GCACATTCTCATCCATGCCA+AGG | + | chr2.3:12090057-12090076 | MS.gene35557:CDS | 50.0% | |
| GCTCCTGGTTGAGAATGTGT+TGG | - | chr2.3:12090120-12090139 | None:intergenic | 50.0% | |
| GGCATGGATGAGAATGTGCA+AGG | - | chr2.3:12090056-12090075 | None:intergenic | 50.0% | |
| GGGTGTCTGCGAACAAGAAA+AGG | + | chr2.3:12089643-12089662 | MS.gene35557:CDS | 50.0% | |
| TCACTTAGGTCGTGCACCTA+AGG | + | chr2.3:12089276-12089295 | MS.gene35557:CDS | 50.0% | |
| TGTGGCTATTGGAAAGCCAC+TGG | + | chr2.3:12089193-12089212 | MS.gene35557:CDS | 50.0% | |
| ! | ACGAGTACTGTGTCAGTGAC+AGG | + | chr2.3:12089323-12089342 | MS.gene35557:CDS | 50.0% |
| ! | ATAACTGCTGCTTCCCCGTT+TGG | - | chr2.3:12089684-12089703 | None:intergenic | 50.0% |
| ! | GAGCTACTGACTGTGGCTAT+TGG | + | chr2.3:12089182-12089201 | MS.gene35557:CDS | 50.0% |
| AGACTCTTCGGGCCAGCTAA+AGG | + | chr2.3:12089778-12089797 | MS.gene35557:CDS | 55.0% | |
| CTGTGTCAGTGACAGGTCTC+CGG | + | chr2.3:12089330-12089349 | MS.gene35557:CDS | 55.0% | |
| GTCGTGCACCTAAGGGTGAA+AGG | + | chr2.3:12089284-12089303 | MS.gene35557:CDS | 55.0% | |
| TGGTTCTTCTTCTCTCCCCG+TGG | + | chr2.3:12089127-12089146 | MS.gene35557:CDS | 55.0% | |
| TTCTCCGTTGTGCAGTGCCT+TGG | - | chr2.3:12090077-12090096 | None:intergenic | 55.0% | |
| ! | CACGTTGCGCTCTTTTCCAG+TGG | - | chr2.3:12089212-12089231 | None:intergenic | 55.0% |
| !! | CATGCCAAGGCACTGCACAA+CGG | + | chr2.3:12090070-12090089 | MS.gene35557:CDS | 55.0% |
| CGTTGTGCAGTGCCTTGGCA+TGG | - | chr2.3:12090072-12090091 | None:intergenic | 60.0% | |
| GTCAGTGACAGGTCTCCGGT+GGG | + | chr2.3:12089334-12089353 | MS.gene35557:intron | 60.0% | |
| TGTCAGTGACAGGTCTCCGG+TGG | + | chr2.3:12089333-12089352 | MS.gene35557:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 12089098 | 12090304 | 12089098 | ID=MS.gene35557 |
| chr2.3 | mRNA | 12089098 | 12090304 | 12089098 | ID=MS.gene35557.t1;Parent=MS.gene35557 |
| chr2.3 | exon | 12089098 | 12089351 | 12089098 | ID=MS.gene35557.t1.exon1;Parent=MS.gene35557.t1 |
| chr2.3 | CDS | 12089098 | 12089351 | 12089098 | ID=cds.MS.gene35557.t1;Parent=MS.gene35557.t1 |
| chr2.3 | exon | 12089452 | 12089799 | 12089452 | ID=MS.gene35557.t1.exon2;Parent=MS.gene35557.t1 |
| chr2.3 | CDS | 12089452 | 12089799 | 12089452 | ID=cds.MS.gene35557.t1;Parent=MS.gene35557.t1 |
| chr2.3 | exon | 12089955 | 12090304 | 12089955 | ID=MS.gene35557.t1.exon3;Parent=MS.gene35557.t1 |
| chr2.3 | CDS | 12089955 | 12090304 | 12089955 | ID=cds.MS.gene35557.t1;Parent=MS.gene35557.t1 |
| Gene Sequence |
| Protein sequence |
