Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35957.t1 | XP_013445712.1 | 94.5 | 253 | 14 | 0 | 83 | 335 | 74 | 326 | 2.10E-129 | 473 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35957.t1 | A0A072TS94 | 94.5 | 253 | 14 | 0 | 83 | 335 | 74 | 326 | 1.5e-129 | 473.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049356 | MS.gene35957 | 0.801909 | 7.21E-49 | -1.69E-46 |
| MS.gene049389 | MS.gene35957 | 0.805841 | 1.10E-49 | -1.69E-46 |
| MS.gene049758 | MS.gene35957 | 0.842758 | 2.13E-58 | -1.69E-46 |
| MS.gene050128 | MS.gene35957 | 0.806284 | 8.87E-50 | -1.69E-46 |
| MS.gene050301 | MS.gene35957 | 0.860187 | 2.46E-63 | -1.69E-46 |
| MS.gene050529 | MS.gene35957 | 0.804946 | 1.69E-49 | -1.69E-46 |
| MS.gene050670 | MS.gene35957 | 0.833268 | 5.88E-56 | -1.69E-46 |
| MS.gene05101 | MS.gene35957 | 0.80583 | 1.10E-49 | -1.69E-46 |
| MS.gene05105 | MS.gene35957 | 0.812548 | 4.01E-51 | -1.69E-46 |
| MS.gene051360 | MS.gene35957 | 0.810053 | 1.40E-50 | -1.69E-46 |
| MS.gene051860 | MS.gene35957 | 0.818371 | 2.03E-52 | -1.69E-46 |
| MS.gene052077 | MS.gene35957 | 0.812691 | 3.73E-51 | -1.69E-46 |
| MS.gene052078 | MS.gene35957 | 0.805412 | 1.35E-49 | -1.69E-46 |
| MS.gene052188 | MS.gene35957 | 0.850715 | 1.42E-60 | -1.69E-46 |
| MS.gene052310 | MS.gene35957 | 0.837825 | 4.13E-57 | -1.69E-46 |
| MS.gene052340 | MS.gene35957 | 0.843365 | 1.47E-58 | -1.69E-46 |
| MS.gene052485 | MS.gene35957 | 0.809926 | 1.49E-50 | -1.69E-46 |
| MS.gene05316 | MS.gene35957 | 0.800023 | 1.75E-48 | -1.69E-46 |
| MS.gene053209 | MS.gene35957 | 0.823181 | 1.59E-53 | -1.69E-46 |
| MS.gene053557 | MS.gene35957 | 0.805163 | 1.52E-49 | -1.69E-46 |
| MS.gene053836 | MS.gene35957 | 0.846577 | 1.99E-59 | -1.69E-46 |
| MS.gene054123 | MS.gene35957 | 0.820572 | 6.39E-53 | -1.69E-46 |
| MS.gene05455 | MS.gene35957 | 0.829166 | 5.99E-55 | -1.69E-46 |
| MS.gene054930 | MS.gene35957 | 0.812468 | 4.18E-51 | -1.69E-46 |
| MS.gene055116 | MS.gene35957 | 0.821055 | 4.95E-53 | -1.69E-46 |
| MS.gene055277 | MS.gene35957 | 0.813292 | 2.76E-51 | -1.69E-46 |
| MS.gene055422 | MS.gene35957 | 0.813717 | 2.22E-51 | -1.69E-46 |
| MS.gene055428 | MS.gene35957 | 0.817305 | 3.53E-52 | -1.69E-46 |
| MS.gene05553 | MS.gene35957 | 0.835829 | 1.34E-56 | -1.69E-46 |
| MS.gene055604 | MS.gene35957 | 0.80029 | 1.54E-48 | -1.69E-46 |
| MS.gene055666 | MS.gene35957 | 0.809318 | 2.01E-50 | -1.69E-46 |
| MS.gene055859 | MS.gene35957 | 0.81356 | 2.41E-51 | -1.69E-46 |
| MS.gene056407 | MS.gene35957 | 0.879099 | 1.64E-69 | -1.69E-46 |
| MS.gene056410 | MS.gene35957 | 0.819999 | 8.65E-53 | -1.69E-46 |
| MS.gene056612 | MS.gene35957 | 0.810024 | 1.42E-50 | -1.69E-46 |
| MS.gene05702 | MS.gene35957 | 0.827639 | 1.40E-54 | -1.69E-46 |
| MS.gene057448 | MS.gene35957 | 0.821404 | 4.11E-53 | -1.69E-46 |
| MS.gene057450 | MS.gene35957 | 0.826176 | 3.13E-54 | -1.69E-46 |
| MS.gene057749 | MS.gene35957 | 0.803164 | 3.97E-49 | -1.69E-46 |
| MS.gene057823 | MS.gene35957 | 0.801771 | 7.69E-49 | -1.69E-46 |
| MS.gene058002 | MS.gene35957 | 0.843916 | 1.04E-58 | -1.69E-46 |
| MS.gene058082 | MS.gene35957 | 0.832964 | 7.00E-56 | -1.69E-46 |
| MS.gene05811 | MS.gene35957 | 0.852324 | 4.97E-61 | -1.69E-46 |
| MS.gene058142 | MS.gene35957 | 0.808226 | 3.44E-50 | -1.69E-46 |
| MS.gene058293 | MS.gene35957 | 0.828679 | 7.86E-55 | -1.69E-46 |
| MS.gene058365 | MS.gene35957 | 0.831739 | 1.41E-55 | -1.69E-46 |
| MS.gene058660 | MS.gene35957 | 0.820871 | 5.45E-53 | -1.69E-46 |
| MS.gene058700 | MS.gene35957 | 0.813217 | 2.86E-51 | -1.69E-46 |
| MS.gene058787 | MS.gene35957 | 0.801096 | 1.06E-48 | -1.69E-46 |
| MS.gene058845 | MS.gene35957 | 0.801837 | 7.46E-49 | -1.69E-46 |
| MS.gene05907 | MS.gene35957 | 0.882323 | 1.15E-70 | -1.69E-46 |
| MS.gene059518 | MS.gene35957 | 0.812704 | 3.71E-51 | -1.69E-46 |
| MS.gene059597 | MS.gene35957 | 0.851128 | 1.09E-60 | -1.69E-46 |
| MS.gene05959 | MS.gene35957 | 0.809115 | 2.22E-50 | -1.69E-46 |
| MS.gene059676 | MS.gene35957 | 0.867635 | 1.18E-65 | -1.69E-46 |
| MS.gene059688 | MS.gene35957 | 0.837904 | 3.95E-57 | -1.69E-46 |
| MS.gene059692 | MS.gene35957 | 0.844547 | 7.07E-59 | -1.69E-46 |
| MS.gene059695 | MS.gene35957 | 0.848141 | 7.40E-60 | -1.69E-46 |
| MS.gene05984 | MS.gene35957 | 0.825955 | 3.53E-54 | -1.69E-46 |
| MS.gene059894 | MS.gene35957 | 0.815147 | 1.07E-51 | -1.69E-46 |
| MS.gene059899 | MS.gene35957 | 0.801433 | 9.03E-49 | -1.69E-46 |
| MS.gene061049 | MS.gene35957 | 0.850149 | 2.05E-60 | -1.69E-46 |
| MS.gene061051 | MS.gene35957 | -0.836928 | 7.02E-57 | -1.69E-46 |
| MS.gene061154 | MS.gene35957 | 0.801279 | 9.71E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35957.t1 | MTR_8g467540 | 94.466 | 253 | 14 | 0 | 83 | 335 | 74 | 326 | 4.34e-166 | 477 |
| MS.gene35957.t1 | MTR_8g467540 | 91.321 | 265 | 11 | 3 | 335 | 598 | 73 | 326 | 1.90e-161 | 465 |
| MS.gene35957.t1 | MTR_8g467540 | 94.466 | 253 | 14 | 0 | 83 | 335 | 74 | 326 | 4.34e-166 | 477 |
| MS.gene35957.t1 | MTR_8g467540 | 91.321 | 265 | 11 | 3 | 335 | 598 | 73 | 326 | 1.90e-161 | 465 |
| MS.gene35957.t1 | MTR_8g467540 | 94.037 | 218 | 13 | 0 | 83 | 300 | 74 | 291 | 5.35e-141 | 411 |
| MS.gene35957.t1 | MTR_8g467540 | 90.393 | 229 | 11 | 2 | 335 | 562 | 73 | 291 | 1.12e-137 | 403 |
| MS.gene35957.t1 | MTR_7g021510 | 77.941 | 68 | 8 | 1 | 19 | 79 | 18 | 85 | 1.32e-24 | 107 |
| MS.gene35957.t1 | MTR_1g099420 | 28.216 | 241 | 161 | 4 | 94 | 331 | 109 | 340 | 4.31e-18 | 86.3 |
| MS.gene35957.t1 | MTR_1g099420 | 27.381 | 252 | 159 | 7 | 347 | 594 | 109 | 340 | 1.57e-11 | 66.6 |
| MS.gene35957.t1 | MTR_8g099085 | 27.077 | 325 | 197 | 10 | 27 | 331 | 37 | 341 | 1.27e-16 | 82.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35957.t1 | AT1G14270 | 67.578 | 256 | 83 | 0 | 80 | 335 | 85 | 340 | 3.44e-120 | 360 |
| MS.gene35957.t1 | AT1G14270 | 65.414 | 266 | 80 | 3 | 334 | 598 | 86 | 340 | 4.96e-113 | 342 |
| MS.gene35957.t1 | AT1G14270 | 66.816 | 223 | 74 | 0 | 113 | 335 | 12 | 234 | 1.60e-102 | 311 |
| MS.gene35957.t1 | AT1G14270 | 63.948 | 233 | 72 | 3 | 367 | 598 | 13 | 234 | 3.53e-94 | 290 |
| MS.gene35957.t1 | AT1G14270 | 67.773 | 211 | 68 | 0 | 125 | 335 | 4 | 214 | 1.39e-99 | 303 |
| MS.gene35957.t1 | AT1G14270 | 63.964 | 222 | 68 | 3 | 378 | 598 | 4 | 214 | 4.86e-90 | 278 |
| MS.gene35957.t1 | AT1G14270 | 67.773 | 211 | 68 | 0 | 125 | 335 | 4 | 214 | 1.39e-99 | 303 |
| MS.gene35957.t1 | AT1G14270 | 63.964 | 222 | 68 | 3 | 378 | 598 | 4 | 214 | 4.86e-90 | 278 |
| MS.gene35957.t1 | AT5G60750 | 26.506 | 249 | 158 | 5 | 93 | 331 | 112 | 345 | 1.02e-15 | 79.3 |
| MS.gene35957.t1 | AT2G20725 | 27.304 | 293 | 181 | 14 | 44 | 325 | 24 | 295 | 2.17e-12 | 68.9 |
| MS.gene35957.t1 | AT1G05840 | 46.835 | 79 | 34 | 2 | 8 | 79 | 15 | 92 | 2.80e-11 | 66.6 |
Find 165 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATTATTAACCTCTCTTTC+TGG | 0.150480 | 8.2:-41619196 | None:intergenic |
| AGGCTTTATCATGAGAAAAT+TGG | 0.223106 | 8.2:+41607615 | MS.gene35957:intron |
| ACATCTCTTGCTTGTGGATT+GGG | 0.257811 | 8.2:+41617487 | MS.gene35957:CDS |
| TTATGACGTCCCTAACTAAA+TGG | 0.263174 | 8.2:+41620690 | MS.gene35957:CDS |
| CCTGAAGGCTTCTTCAAATA+TGG | 0.278541 | 8.2:+41618811 | MS.gene35957:CDS |
| ATATGACGTCCCTAACTAAA+TGG | 0.279595 | 8.2:+41612341 | MS.gene35957:CDS |
| ATAGTCAATACCATTTAGTT+AGG | 0.285869 | 8.2:-41620700 | None:intergenic |
| GACGGTTACCCGACGGAATC+AGG | 0.287796 | 8.2:-41607501 | None:intergenic |
| ACAATCAATACCATTTAGTT+AGG | 0.294075 | 8.2:-41612351 | None:intergenic |
| TGATTGGTTCTTCAAGTATC+AGG | 0.294089 | 8.2:+41611950 | MS.gene35957:CDS |
| TGATTGGTTCTTCAAGTATC+AGG | 0.294089 | 8.2:+41620356 | MS.gene35957:CDS |
| CCGGAAGGCTTCTTCAAATA+TGG | 0.295934 | 8.2:+41611205 | MS.gene35957:CDS |
| GTTCGCTTGCTTCCATTGAT+TGG | 0.296883 | 8.2:+41611934 | MS.gene35957:CDS |
| GTTCGCTTGCTTCCATTGAT+TGG | 0.296883 | 8.2:+41620340 | MS.gene35957:CDS |
| GCAACAGCTCTACCATATTT+AGG | 0.302368 | 8.2:+41610328 | MS.gene35957:CDS |
| TTCGTCATTAATCTCATTGC+AGG | 0.308122 | 8.2:+41622058 | MS.gene35957:CDS |
| AGAGTTACTCTTTATAAATC+AGG | 0.308994 | 8.2:+41610387 | MS.gene35957:CDS |
| TTTCCCCAGTTGTTTGTTCT+AGG | 0.316372 | 8.2:+41614377 | MS.gene35957:CDS |
| TTTCCCCAGTTGTTTGTTCT+AGG | 0.316372 | 8.2:+41622142 | MS.gene35957:CDS |
| TCACTATCCATGCGGCGTTC+TGG | 0.318056 | 8.2:+41623007 | MS.gene35957:CDS |
| CCATATTTGAAGAAGCCTTC+AGG | 0.320392 | 8.2:-41618811 | None:intergenic |
| CTATCACCATCCATGCATTC+TGG | 0.325645 | 8.2:+41614932 | MS.gene35957:CDS |
| TCATCTAGACTTAGCATATC+AGG | 0.332861 | 8.2:-41610358 | None:intergenic |
| TCATCTAGACTTAGCATATC+AGG | 0.332861 | 8.2:-41617948 | None:intergenic |
| AATCAGAATGGCCTATTCTT+AGG | 0.333406 | 8.2:+41617425 | MS.gene35957:CDS |
| CCATATTTGAAGAAGCCTTC+CGG | 0.342881 | 8.2:-41611205 | None:intergenic |
| TATCATGAGAAAATTGGAAT+TGG | 0.343533 | 8.2:+41607621 | MS.gene35957:CDS |
| AACATCTCTTGCTTGTGGAT+TGG | 0.345415 | 8.2:+41617486 | MS.gene35957:CDS |
| TCAGGTCGAATTCCTAAATA+TGG | 0.345800 | 8.2:-41610340 | None:intergenic |
| AATTATTAACCTCTCTTTCT+GGG | 0.349933 | 8.2:-41619195 | None:intergenic |
| ATCACAACTGCTGCTGTACT+TGG | 0.353973 | 8.2:+41611145 | MS.gene35957:CDS |
| CATATTTGAAGAAGCCTTCC+GGG | 0.354286 | 8.2:-41611204 | None:intergenic |
| GCCCTTGCTCATCTCACTCC+TGG | 0.357636 | 8.2:+41614350 | MS.gene35957:CDS |
| GCCCTTGCTCATCTCACTCC+TGG | 0.357636 | 8.2:+41622115 | MS.gene35957:CDS |
| CATGCGGCGTTCTGGAATTC+AGG | 0.360220 | 8.2:+41623015 | MS.gene35957:CDS |
| GATCAGAATGGCCTATTCTT+AGG | 0.362532 | 8.2:+41609867 | MS.gene35957:CDS |
| GTTGGTGCCCTAGTTGCTAT+TGG | 0.367748 | 8.2:+41611482 | MS.gene35957:CDS |
| TGGGCAGGAGTTGGACTTGT+TGG | 0.375501 | 8.2:+41619115 | MS.gene35957:CDS |
| AGAGTTACTCTTTATAGATC+AGG | 0.375744 | 8.2:+41617977 | MS.gene35957:CDS |
| CTGTCAATCCAATGGAAACT+AGG | 0.376517 | 8.2:-41619141 | None:intergenic |
| TCATTGTAGCACTGCTTGTT+TGG | 0.385945 | 8.2:+41612261 | MS.gene35957:intron |
| TCATTGTAGCACTGCTTGTT+TGG | 0.385945 | 8.2:+41620613 | MS.gene35957:intron |
| ATCCATGCATTCTGGAATTC+AGG | 0.389157 | 8.2:+41614940 | MS.gene35957:CDS |
| AACTCTTTCTTGCAGATTTG+AGG | 0.400372 | 8.2:+41611408 | MS.gene35957:intron |
| CAATACCTAGAACAAACAAC+TGG | 0.406876 | 8.2:-41614382 | None:intergenic |
| CAATACCTAGAACAAACAAC+TGG | 0.406876 | 8.2:-41622147 | None:intergenic |
| GCTTGTTTGGTGGGCATCAC+AGG | 0.412495 | 8.2:+41620626 | MS.gene35957:CDS |
| AAAACTTTGTTGCAGATTTG+AGG | 0.419511 | 8.2:+41619059 | MS.gene35957:intron |
| TCAGGTCGAATTCCTAGATA+TGG | 0.420060 | 8.2:-41617930 | None:intergenic |
| TGTAGCACTGCTTGTTTGGT+GGG | 0.421798 | 8.2:+41612265 | MS.gene35957:intron |
| GGAATCAGGGCGAGCGGTGC+CGG | 0.421922 | 8.2:-41607487 | None:intergenic |
| CTAGTTTCCATTGGATTGAC+AGG | 0.425424 | 8.2:+41619142 | MS.gene35957:CDS |
| ATTACTTCTCACTGTTCTCC+AGG | 0.428065 | 8.2:+41614969 | MS.gene35957:CDS |
| ATTACTTCTCACTGTTCTCC+AGG | 0.428065 | 8.2:+41623044 | MS.gene35957:CDS |
| ATCACAACTGCTGCTGTACT+TGG | 0.428269 | 8.2:+41618751 | MS.gene35957:CDS |
| AAACTTTGTTGCAGATTTGA+GGG | 0.442966 | 8.2:+41619060 | MS.gene35957:intron |
| CATATTTGAAGAAGCCTTCA+GGG | 0.443115 | 8.2:-41618810 | None:intergenic |
| CAGAATGCATGGATGGTGAT+AGG | 0.443764 | 8.2:-41614931 | None:intergenic |
| CTAGTTGCTATTGGATTGAC+AGG | 0.448618 | 8.2:+41611491 | MS.gene35957:CDS |
| CTGTCAATCCAATAGCAACT+AGG | 0.448887 | 8.2:-41611490 | None:intergenic |
| GCAACAGCTCTACCATATCT+AGG | 0.449313 | 8.2:+41617918 | MS.gene35957:CDS |
| ACTCTTTCTTGCAGATTTGA+GGG | 0.451908 | 8.2:+41611409 | MS.gene35957:intron |
| TTGGAACTGTTGGATGAAAT+CGG | 0.453216 | 8.2:-41623227 | None:intergenic |
| TAGGCGATGGGAGGTACCTT+GGG | 0.453336 | 8.2:+41609886 | MS.gene35957:CDS |
| TAGGCGATGGGAGGTACCTT+GGG | 0.453336 | 8.2:+41617444 | MS.gene35957:CDS |
| CATCTCTTGCTTGTGGATTG+TGG | 0.459003 | 8.2:+41609930 | MS.gene35957:CDS |
| ACACCAAGGTTACTTCTAGA+AGG | 0.460656 | 8.2:-41607648 | None:intergenic |
| CTGATCTTATTTCAGGACTC+TGG | 0.462211 | 8.2:+41609845 | MS.gene35957:intron |
| GTTGGTGCCCTAGTTTCCAT+TGG | 0.465419 | 8.2:+41619133 | MS.gene35957:CDS |
| GATCATCGGAGAATTTGTAT+TGG | 0.467860 | 8.2:-41607404 | None:intergenic |
| TTGTAGCACTGCTTGTTTGG+TGG | 0.472095 | 8.2:+41612264 | MS.gene35957:intron |
| TATGCTAAGTCTAGATGAAA+AGG | 0.474035 | 8.2:+41610363 | MS.gene35957:CDS |
| TATGCTAAGTCTAGATGAAA+AGG | 0.474035 | 8.2:+41617953 | MS.gene35957:CDS |
| TGTAGCACTGCTTGTTTGGT+GGG | 0.474550 | 8.2:+41620617 | MS.gene35957:intron |
| TTGAAGAAGCCTTCCGGGAG+TGG | 0.477325 | 8.2:-41611199 | None:intergenic |
| CACACACTCACGCAATAAGT+TGG | 0.481151 | 8.2:-41623246 | None:intergenic |
| TTGAAGAAGCCTTCAGGGAG+TGG | 0.486745 | 8.2:-41618805 | None:intergenic |
| ACGCAATAAGTTGGAACTGT+TGG | 0.487591 | 8.2:-41623237 | None:intergenic |
| GAGTTACTCTTTATAAATCA+GGG | 0.494357 | 8.2:+41610388 | MS.gene35957:CDS |
| GGCGAGCGGTGCCGGTGAGA+AGG | 0.495268 | 8.2:-41607479 | None:intergenic |
| AACGCCGCATGGATAGTGAT+AGG | 0.497634 | 8.2:-41623003 | None:intergenic |
| GAGTTACTCTTTATAGATCA+GGG | 0.497821 | 8.2:+41617978 | MS.gene35957:CDS |
| TTGTAGCACTGCTTGTTTGG+TGG | 0.499611 | 8.2:+41620616 | MS.gene35957:intron |
| TCTACTGTTGCCGCCATCCA+CGG | 0.499820 | 8.2:+41607369 | MS.gene35957:CDS |
| TCATTAACATCTCTTGCTTG+TGG | 0.501910 | 8.2:+41609923 | MS.gene35957:CDS |
| TCATTAACATCTCTTGCTTG+TGG | 0.501910 | 8.2:+41617481 | MS.gene35957:CDS |
| TTAGGCGATGGGAGGTACCT+TGG | 0.501922 | 8.2:+41609885 | MS.gene35957:CDS |
| TTAGGCGATGGGAGGTACCT+TGG | 0.501922 | 8.2:+41617443 | MS.gene35957:CDS |
| CATCTCTTGCTTGTGGATTG+GGG | 0.504673 | 8.2:+41617488 | MS.gene35957:CDS |
| ATACTTGAAGAACCAATCAA+TGG | 0.507679 | 8.2:-41611946 | None:intergenic |
| ATACTTGAAGAACCAATCAA+TGG | 0.507679 | 8.2:-41620352 | None:intergenic |
| ACCGCTCGCCCTGATTCCGT+CGG | 0.509097 | 8.2:+41607492 | MS.gene35957:CDS |
| ACACTAAGGATGATAGCAAC+TGG | 0.512965 | 8.2:-41622090 | None:intergenic |
| CGGTGAGAAGGGAGATTTGA+CGG | 0.514938 | 8.2:-41607467 | None:intergenic |
| GCACTAAGGATGATAGCAAC+TGG | 0.517625 | 8.2:-41614317 | None:intergenic |
| CTCCTGAATTCCAGAATGCA+TGG | 0.518118 | 8.2:-41614942 | None:intergenic |
| ACCTCCCATCGCCTAAGAAT+AGG | 0.518350 | 8.2:-41609878 | None:intergenic |
| ACCTCCCATCGCCTAAGAAT+AGG | 0.518350 | 8.2:-41617436 | None:intergenic |
| TTCAGGACTCTGAATCAGAA+TGG | 0.519690 | 8.2:+41617413 | MS.gene35957:intron |
| CAACACTTACCAACCACTCC+CGG | 0.519933 | 8.2:+41611186 | MS.gene35957:CDS |
| TAGTCAATACCATTTAGTTA+GGG | 0.520958 | 8.2:-41620699 | None:intergenic |
| GCGAGCGGTGCCGGTGAGAA+GGG | 0.526126 | 8.2:-41607478 | None:intergenic |
| GACGTTGAAAACACCGTGGA+TGG | 0.529471 | 8.2:-41607382 | None:intergenic |
| GGGCAAACACAGCCGCACTA+AGG | 0.529534 | 8.2:-41614331 | None:intergenic |
| ATGAGCAAGGGCAAACACTA+AGG | 0.530355 | 8.2:-41622104 | None:intergenic |
| TGGGCAGGAGTTGGACATGT+TGG | 0.537196 | 8.2:+41611464 | MS.gene35957:CDS |
| CAATCAATACCATTTAGTTA+GGG | 0.538654 | 8.2:-41612350 | None:intergenic |
| AATGGCCTATTCTTAGGCGA+TGG | 0.544016 | 8.2:+41609873 | MS.gene35957:CDS |
| AATGGCCTATTCTTAGGCGA+TGG | 0.544016 | 8.2:+41617431 | MS.gene35957:CDS |
| GGCGGAAGTCATGAGCTTTG+AGG | 0.553897 | 8.2:-41607446 | None:intergenic |
| AAAACTGTCTCCTCAAGAAG+TGG | 0.553996 | 8.2:-41612307 | None:intergenic |
| GGATAGTGATAGGAGTGAGA+AGG | 0.554636 | 8.2:-41622993 | None:intergenic |
| TGTGTTGACAGGTTTGGTTG+TGG | 0.555757 | 8.2:+41610306 | MS.gene35957:CDS |
| TGTCAATCCAATAGCAACTA+GGG | 0.557312 | 8.2:-41611489 | None:intergenic |
| GAGAGAAAGTTGTTGATCAT+CGG | 0.558230 | 8.2:-41607418 | None:intergenic |
| CCGCTCGCCCTGATTCCGTC+GGG | 0.559601 | 8.2:+41607493 | MS.gene35957:CDS |
| CTGAATTCCAGAACGCCGCA+TGG | 0.563349 | 8.2:-41623014 | None:intergenic |
| TGTCAATCCAATGGAAACTA+GGG | 0.563543 | 8.2:-41619140 | None:intergenic |
| TTCAGGACTCTGGATCAGAA+TGG | 0.563914 | 8.2:+41609855 | MS.gene35957:intron |
| AGAAGCCTTCAGGGAGTGGT+TGG | 0.565179 | 8.2:-41618801 | None:intergenic |
| TCACAACTGCTGCTGTACTT+GGG | 0.566435 | 8.2:+41611146 | MS.gene35957:CDS |
| AGAAGCCTTCCGGGAGTGGT+TGG | 0.572115 | 8.2:-41611195 | None:intergenic |
| ACGGTTACCCGACGGAATCA+GGG | 0.575124 | 8.2:-41607500 | None:intergenic |
| GATGGGAGGTACCTTGGGAA+TGG | 0.575144 | 8.2:+41609891 | MS.gene35957:CDS |
| GATGGGAGGTACCTTGGGAA+TGG | 0.575144 | 8.2:+41617449 | MS.gene35957:CDS |
| TCGTCATTAATCTCATTGCA+GGG | 0.578114 | 8.2:+41622059 | MS.gene35957:CDS |
| TGTGTTGACAGGTTTGGTTG+AGG | 0.582341 | 8.2:+41617896 | MS.gene35957:CDS |
| ATGGCCTATTCTTAGGCGAT+GGG | 0.585153 | 8.2:+41609874 | MS.gene35957:CDS |
| ATGGCCTATTCTTAGGCGAT+GGG | 0.585153 | 8.2:+41617432 | MS.gene35957:CDS |
| AGCAACTCCTGTCAATCCAA+TGG | 0.588920 | 8.2:-41619149 | None:intergenic |
| TGGAGAAACCCCAGAAAGAG+AGG | 0.589756 | 8.2:+41619186 | MS.gene35957:CDS |
| GAAACTGTTTGCCATTCCCA+AGG | 0.595017 | 8.2:-41609902 | None:intergenic |
| GAAACTGTTTGCCATTCCCA+AGG | 0.595017 | 8.2:-41617460 | None:intergenic |
| ATTATTAACCTCTCTTTCTG+GGG | 0.595502 | 8.2:-41619194 | None:intergenic |
| GGGACGTCATATAAAACCCT+CGG | 0.595860 | 8.2:-41612330 | None:intergenic |
| AGGATGATAGCAACTGGTGT+AGG | 0.610354 | 8.2:-41614311 | None:intergenic |
| AGGATGATAGCAACTGGTGT+AGG | 0.610354 | 8.2:-41622084 | None:intergenic |
| ACCAGGAGTGAGATGAGCAA+GGG | 0.612598 | 8.2:-41614351 | None:intergenic |
| ACCAGGAGTGAGATGAGCAA+GGG | 0.612598 | 8.2:-41622116 | None:intergenic |
| GAAGTCATGAGCTTTGAGGA+CGG | 0.615245 | 8.2:-41607442 | None:intergenic |
| AACTGTTGGATGAAATCGGA+CGG | 0.615657 | 8.2:-41623223 | None:intergenic |
| AACAACTGGGGAAATTCACC+AGG | 0.615952 | 8.2:-41614368 | None:intergenic |
| AACAACTGGGGAAATTCACC+AGG | 0.615952 | 8.2:-41622133 | None:intergenic |
| CACCAGGAGTGAGATGAGCA+AGG | 0.617074 | 8.2:-41614352 | None:intergenic |
| CACCAGGAGTGAGATGAGCA+AGG | 0.617074 | 8.2:-41622117 | None:intergenic |
| GCCTATTCTTAGGCGATGGG+AGG | 0.625243 | 8.2:+41609877 | MS.gene35957:CDS |
| GCCTATTCTTAGGCGATGGG+AGG | 0.625243 | 8.2:+41617435 | MS.gene35957:CDS |
| TGAATTCCAGAATGCATGGA+TGG | 0.626031 | 8.2:-41614938 | None:intergenic |
| CGTCAAATCTCCCTTCTCAC+CGG | 0.626186 | 8.2:+41607468 | MS.gene35957:CDS |
| ACTCCTTCTAGAAGTAACCT+TGG | 0.629764 | 8.2:+41607645 | MS.gene35957:CDS |
| GTTGAAAACACCGTGGATGG+CGG | 0.631072 | 8.2:-41607379 | None:intergenic |
| ACTTACCAACCACTCCCTGA+AGG | 0.637441 | 8.2:+41618796 | MS.gene35957:CDS |
| AATACCTAGAACAAACAACT+GGG | 0.641783 | 8.2:-41614381 | None:intergenic |
| AATACCTAGAACAAACAACT+GGG | 0.641783 | 8.2:-41622146 | None:intergenic |
| CCCGACGGAATCAGGGCGAG+CGG | 0.642356 | 8.2:-41607493 | None:intergenic |
| CACTCCTATCACTATCCATG+CGG | 0.643897 | 8.2:+41622999 | MS.gene35957:CDS |
| AGTTACTCTTTATAGATCAG+GGG | 0.648024 | 8.2:+41617979 | MS.gene35957:CDS |
| GGATGGTGATAGGAGTGAGA+AGG | 0.648276 | 8.2:-41614921 | None:intergenic |
| AGTTACTCTTTATAAATCAG+GGG | 0.654976 | 8.2:+41610389 | MS.gene35957:CDS |
| AGTTGCTATCATCCTTAGTG+CGG | 0.655251 | 8.2:+41614319 | MS.gene35957:CDS |
| ACTTACCAACCACTCCCGGA+AGG | 0.660166 | 8.2:+41611190 | MS.gene35957:CDS |
| ATACCTAGAACAAACAACTG+GGG | 0.720843 | 8.2:-41614380 | None:intergenic |
| ATACCTAGAACAAACAACTG+GGG | 0.720843 | 8.2:-41622145 | None:intergenic |
| TGAGAAGGGAGATTTGACGG+CGG | 0.761050 | 8.2:-41607464 | None:intergenic |
| ATTGGACGTTGAAAACACCG+TGG | 0.795904 | 8.2:-41607386 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 41607321 | 41623261 | 41607321 | ID=MS.gene35957 |
| chr8.2 | mRNA | 41607321 | 41623261 | 41607321 | ID=MS.gene35957.t1;Parent=MS.gene35957 |
| chr8.2 | exon | 41607321 | 41607514 | 41607321 | ID=MS.gene35957.t1.exon1;Parent=MS.gene35957.t1 |
| chr8.2 | CDS | 41607321 | 41607514 | 41607321 | ID=cds.MS.gene35957.t1;Parent=MS.gene35957.t1 |
| chr8.2 | exon | 41607617 | 41607668 | 41607617 | ID=MS.gene35957.t1.exon2;Parent=MS.gene35957.t1 |
| chr8.2 | CDS | 41607617 | 41607668 | 41607617 | ID=cds.MS.gene35957.t1;Parent=MS.gene35957.t1 |
| chr8.2 | exon | 41609860 | 41609951 | 41609860 | ID=MS.gene35957.t1.exon3;Parent=MS.gene35957.t1 |
| chr8.2 | CDS | 41609860 | 41609951 | 41609860 | ID=cds.MS.gene35957.t1;Parent=MS.gene35957.t1 |
| chr8.2 | exon | 41610303 | 41610410 | 41610303 | ID=MS.gene35957.t1.exon4;Parent=MS.gene35957.t1 |
| chr8.2 | CDS | 41610303 | 41610410 | 41610303 | ID=cds.MS.gene35957.t1;Parent=MS.gene35957.t1 |
| chr8.2 | exon | 41611144 | 41611226 | 41611144 | ID=MS.gene35957.t1.exon5;Parent=MS.gene35957.t1 |
| chr8.2 | CDS | 41611144 | 41611226 | 41611144 | ID=cds.MS.gene35957.t1;Parent=MS.gene35957.t1 |
| chr8.2 | exon | 41611423 | 41611556 | 41611423 | ID=MS.gene35957.t1.exon6;Parent=MS.gene35957.t1 |
| chr8.2 | CDS | 41611423 | 41611556 | 41611423 | ID=cds.MS.gene35957.t1;Parent=MS.gene35957.t1 |
| chr8.2 | exon | 41611922 | 41611971 | 41611922 | ID=MS.gene35957.t1.exon7;Parent=MS.gene35957.t1 |
| chr8.2 | CDS | 41611922 | 41611971 | 41611922 | ID=cds.MS.gene35957.t1;Parent=MS.gene35957.t1 |
| chr8.2 | exon | 41612270 | 41612362 | 41612270 | ID=MS.gene35957.t1.exon8;Parent=MS.gene35957.t1 |
| chr8.2 | CDS | 41612270 | 41612362 | 41612270 | ID=cds.MS.gene35957.t1;Parent=MS.gene35957.t1 |
| chr8.2 | exon | 41614307 | 41614398 | 41614307 | ID=MS.gene35957.t1.exon9;Parent=MS.gene35957.t1 |
| chr8.2 | CDS | 41614307 | 41614398 | 41614307 | ID=cds.MS.gene35957.t1;Parent=MS.gene35957.t1 |
| chr8.2 | exon | 41614884 | 41614990 | 41614884 | ID=MS.gene35957.t1.exon10;Parent=MS.gene35957.t1 |
| chr8.2 | CDS | 41614884 | 41614990 | 41614884 | ID=cds.MS.gene35957.t1;Parent=MS.gene35957.t1 |
| chr8.2 | exon | 41617418 | 41617509 | 41617418 | ID=MS.gene35957.t1.exon11;Parent=MS.gene35957.t1 |
| chr8.2 | CDS | 41617418 | 41617509 | 41617418 | ID=cds.MS.gene35957.t1;Parent=MS.gene35957.t1 |
| chr8.2 | exon | 41617893 | 41618000 | 41617893 | ID=MS.gene35957.t1.exon12;Parent=MS.gene35957.t1 |
| chr8.2 | CDS | 41617893 | 41618000 | 41617893 | ID=cds.MS.gene35957.t1;Parent=MS.gene35957.t1 |
| chr8.2 | exon | 41618750 | 41618832 | 41618750 | ID=MS.gene35957.t1.exon13;Parent=MS.gene35957.t1 |
| chr8.2 | CDS | 41618750 | 41618832 | 41618750 | ID=cds.MS.gene35957.t1;Parent=MS.gene35957.t1 |
| chr8.2 | exon | 41619074 | 41619207 | 41619074 | ID=MS.gene35957.t1.exon14;Parent=MS.gene35957.t1 |
| chr8.2 | CDS | 41619074 | 41619207 | 41619074 | ID=cds.MS.gene35957.t1;Parent=MS.gene35957.t1 |
| chr8.2 | exon | 41620328 | 41620377 | 41620328 | ID=MS.gene35957.t1.exon15;Parent=MS.gene35957.t1 |
| chr8.2 | CDS | 41620328 | 41620377 | 41620328 | ID=cds.MS.gene35957.t1;Parent=MS.gene35957.t1 |
| chr8.2 | exon | 41620622 | 41620711 | 41620622 | ID=MS.gene35957.t1.exon16;Parent=MS.gene35957.t1 |
| chr8.2 | CDS | 41620622 | 41620711 | 41620622 | ID=cds.MS.gene35957.t1;Parent=MS.gene35957.t1 |
| chr8.2 | exon | 41622042 | 41622163 | 41622042 | ID=MS.gene35957.t1.exon17;Parent=MS.gene35957.t1 |
| chr8.2 | CDS | 41622042 | 41622163 | 41622042 | ID=cds.MS.gene35957.t1;Parent=MS.gene35957.t1 |
| chr8.2 | exon | 41622956 | 41623065 | 41622956 | ID=MS.gene35957.t1.exon18;Parent=MS.gene35957.t1 |
| chr8.2 | CDS | 41622956 | 41623065 | 41622956 | ID=cds.MS.gene35957.t1;Parent=MS.gene35957.t1 |
| chr8.2 | exon | 41623220 | 41623261 | 41623220 | ID=MS.gene35957.t1.exon19;Parent=MS.gene35957.t1 |
| chr8.2 | CDS | 41623220 | 41623261 | 41623220 | ID=cds.MS.gene35957.t1;Parent=MS.gene35957.t1 |
| Gene Sequence |
| Protein sequence |
