AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene36342

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene36342.t1 MTR_2g101370 98.394 249 4 0 1 249 1 249 4.37e-172 474
MS.gene36342.t1 MTR_8g013680 86.179 246 34 0 4 249 3 248 2.65e-148 414
MS.gene36342.t1 MTR_5g012810 75.918 245 58 1 5 249 4 247 2.79e-114 328
MS.gene36342.t1 MTR_4g063090 68.919 222 68 1 25 245 26 247 1.08e-97 286
MS.gene36342.t1 MTR_1g115405 58.468 248 99 3 5 249 6 252 1.86e-90 268
MS.gene36342.t1 MTR_1g077540 52.569 253 113 1 3 248 4 256 3.95e-90 267
MS.gene36342.t1 MTR_1g006490 56.148 244 103 2 5 248 4 243 9.65e-89 263
MS.gene36342.t1 MTR_7g103030 61.633 245 93 1 3 247 4 247 2.36e-88 262
MS.gene36342.t1 MTR_7g023350 61.134 247 94 2 5 249 6 252 4.36e-88 261
MS.gene36342.t1 MTR_6g069040 55.200 250 108 1 3 248 4 253 3.43e-85 254
MS.gene36342.t1 MTR_1g006590 54.286 245 106 3 5 248 4 243 2.47e-83 249
MS.gene36342.t1 MTR_2g060360 46.581 234 124 1 9 242 8 240 4.27e-71 218
MS.gene36342.t1 MTR_2g094270 37.247 247 138 6 10 240 30 275 1.29e-40 141
MS.gene36342.t1 MTR_5g063930 37.860 243 139 4 10 249 27 260 1.59e-40 140
MS.gene36342.t1 MTR_7g101190 37.712 236 131 5 17 237 36 270 6.37e-39 137
MS.gene36342.t1 MTR_3g118010 38.723 235 124 6 17 237 34 262 1.25e-38 136
MS.gene36342.t1 MTR_4g059390 38.017 242 128 7 17 240 36 273 1.59e-37 133
MS.gene36342.t1 MTR_4g006730 37.778 225 120 6 24 242 79 289 4.07e-33 122
MS.gene36342.t1 MTR_2g104940 39.286 224 116 7 24 241 84 293 5.22e-33 122
MS.gene36342.t1 MTR_1g097840 40.090 222 112 7 15 230 69 275 1.41e-32 120
MS.gene36342.t1 MTR_8g098375 35.470 234 136 5 15 236 47 277 6.57e-32 118
MS.gene36342.t1 MTR_5g010150 35.470 234 136 5 15 236 47 277 9.60e-32 118
MS.gene36342.t1 MTR_2g094270 37.445 227 116 7 10 219 30 247 9.70e-32 117
MS.gene36342.t1 MTR_5g082070 36.364 231 132 5 15 233 50 277 1.28e-31 118
MS.gene36342.t1 MTR_3g070210 34.615 234 138 5 15 236 50 280 1.46e-30 115
MS.gene36342.t1 MTR_4g006630 36.574 216 117 6 33 242 1 202 2.54e-30 112
MS.gene36342.t1 MTR_4g006730 36.574 216 117 6 33 242 1 202 3.21e-30 112
MS.gene36342.t1 MTR_4g415300 34.764 233 138 5 15 236 51 280 2.46e-29 112
MS.gene36342.t1 MTR_5g079570 37.657 239 121 9 15 244 35 254 3.94e-29 110
MS.gene36342.t1 MTR_3g008920 39.076 238 123 9 16 247 22 243 1.08e-28 109
MS.gene36342.t1 MTR_2g017620 34.322 236 140 5 11 243 17 240 2.61e-28 108
MS.gene36342.t1 MTR_2g017590 33.871 248 146 7 6 247 19 254 4.36e-28 108
MS.gene36342.t1 MTR_2g017620 34.211 228 137 4 19 243 37 254 5.26e-28 108
MS.gene36342.t1 MTR_1g095070 38.919 185 93 6 68 237 25 204 7.91e-28 106
MS.gene36342.t1 MTR_1g070385 34.404 218 124 6 20 232 62 265 1.59e-26 108
MS.gene36342.t1 MTR_8g087710 32.645 242 145 6 15 249 34 264 2.58e-26 103
MS.gene36342.t1 MTR_8g087720 32.530 249 153 6 8 249 23 263 5.52e-26 102
MS.gene36342.t1 MTR_4g084880 32.500 240 148 5 16 249 31 262 1.71e-25 101
MS.gene36342.t1 MTR_2g017660 32.766 235 149 4 15 249 34 259 4.32e-25 100
MS.gene36342.t1 MTR_7g010650 33.628 226 135 5 20 242 37 250 5.57e-25 100
MS.gene36342.t1 MTR_2g017620 37.059 170 99 3 77 243 9 173 7.28e-24 95.1
MS.gene36342.t1 MTR_2g017610 31.466 232 144 5 19 247 37 256 8.72e-24 97.1
MS.gene36342.t1 MTR_2g017570 31.034 232 145 5 19 247 37 256 2.40e-23 95.9
MS.gene36342.t1 MTR_3g070210 34.483 203 121 4 15 208 50 249 3.99e-23 95.1
MS.gene36342.t1 MTR_4g059390 37.059 170 92 5 20 178 39 204 8.57e-22 90.1
MS.gene36342.t1 MTR_1g095070 41.176 153 73 5 68 208 25 172 6.22e-21 87.4
MS.gene36342.t1 MTR_4g006730 37.209 172 90 4 24 190 79 237 1.73e-18 82.4
MS.gene36342.t1 MTR_5g010150 33.728 169 104 3 15 178 47 212 3.22e-18 80.9
MS.gene36342.t1 MTR_8g098375 33.136 169 105 3 15 178 47 212 4.31e-18 80.9
MS.gene36342.t1 MTR_4g415300 33.516 182 112 4 15 192 51 227 1.47e-17 79.3
MS.gene36342.t1 MTR_3g070210 32.738 168 105 3 15 177 50 214 4.07e-17 77.8
MS.gene36342.t1 MTR_1g097840 35.714 182 97 6 15 190 69 236 2.37e-15 73.9
MS.gene36342.t1 MTR_4g075570 28.279 244 142 7 8 224 33 270 1.01e-14 72.8
MS.gene36342.t1 MTR_8g468730 40.187 107 42 3 136 242 2 86 1.43e-14 68.2
MS.gene36342.t1 MTR_4g006650 35.135 148 71 4 24 166 8 135 5.13e-14 70.9
MS.gene36342.t1 MTR_4g075590 25.207 242 152 6 12 233 29 261 4.86e-12 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene36342.t1 AT3G16240 81.855 248 43 2 4 249 3 250 6.97e-142 398
MS.gene36342.t1 AT5G47450 75.424 236 58 0 5 240 4 239 2.16e-122 348
MS.gene36342.t1 AT4G17340 76.271 236 56 0 5 240 4 239 5.31e-114 327
MS.gene36342.t1 AT2G36830 65.306 245 85 0 3 247 4 248 3.31e-105 305
MS.gene36342.t1 AT3G26520 66.250 240 80 1 3 241 4 243 4.15e-104 302
MS.gene36342.t1 AT4G01470 61.224 245 94 1 5 248 6 250 3.49e-94 277
MS.gene36342.t1 AT1G73190 55.769 260 101 2 3 248 7 266 1.34e-86 258
MS.gene36342.t1 AT1G17810 55.985 259 101 2 3 248 7 265 5.00e-83 249
MS.gene36342.t1 AT2G25810 55.691 246 105 3 3 248 2 243 1.01e-81 245
MS.gene36342.t1 AT3G47440 44.872 234 128 1 9 242 12 244 1.02e-66 207
MS.gene36342.t1 AT4G35100 38.333 240 128 6 15 240 33 266 8.00e-38 134
MS.gene36342.t1 AT4G35100 38.333 240 128 6 15 240 33 266 8.00e-38 134
MS.gene36342.t1 AT2G37170 37.354 257 135 8 11 247 28 278 9.40e-38 134
MS.gene36342.t1 AT2G37170 37.354 257 135 8 11 247 71 321 1.26e-37 134
MS.gene36342.t1 AT3G53420 38.525 244 132 7 20 247 39 280 6.61e-37 132
MS.gene36342.t1 AT3G53420 38.525 244 132 7 20 247 39 280 6.61e-37 132
MS.gene36342.t1 AT3G54820 37.607 234 128 7 20 237 38 269 8.33e-37 131
MS.gene36342.t1 AT5G60660 36.910 233 131 6 20 237 39 270 1.22e-36 131
MS.gene36342.t1 AT2G37180 36.842 247 138 6 17 247 34 278 1.46e-36 130
MS.gene36342.t1 AT2G16850 37.860 243 129 7 20 247 36 271 3.79e-35 127
MS.gene36342.t1 AT2G39010 36.709 237 126 7 20 237 38 269 5.76e-35 127
MS.gene36342.t1 AT4G10380 36.515 241 129 5 4 233 56 283 1.52e-33 123
MS.gene36342.t1 AT1G52180 71.429 84 24 0 129 212 38 121 1.30e-32 115
MS.gene36342.t1 AT1G80760 35.776 232 131 5 15 241 75 293 6.91e-32 119
MS.gene36342.t1 AT4G00430 36.441 236 130 6 15 236 48 277 3.07e-31 117
MS.gene36342.t1 AT4G23400 36.052 233 135 5 15 236 48 277 1.18e-30 115
MS.gene36342.t1 AT1G01620 36.017 236 131 6 15 236 47 276 1.41e-30 115
MS.gene36342.t1 AT3G61430 36.052 233 129 6 15 233 47 273 5.03e-30 114
MS.gene36342.t1 AT3G61430 36.052 233 129 6 15 233 47 273 5.03e-30 114
MS.gene36342.t1 AT2G45960 35.193 233 131 6 15 233 47 273 2.18e-29 112
MS.gene36342.t1 AT5G37820 33.772 228 142 4 20 247 43 261 2.13e-28 109
MS.gene36342.t1 AT5G37820 33.772 228 142 4 20 247 79 297 2.77e-28 110
MS.gene36342.t1 AT1G01620 38.265 196 101 6 56 236 14 204 4.41e-27 104
MS.gene36342.t1 AT5G37810 33.641 217 137 3 20 236 43 252 3.64e-26 103
MS.gene36342.t1 AT4G19030 33.617 235 134 5 13 236 48 271 5.39e-26 103
MS.gene36342.t1 AT4G18910 32.328 232 141 4 13 236 45 268 4.26e-25 100
MS.gene36342.t1 AT3G06100 32.735 223 143 4 3 225 29 244 9.89e-25 99.8
MS.gene36342.t1 AT1G31885 34.199 231 130 5 15 234 38 257 2.10e-24 99.8
MS.gene36342.t1 AT3G06100 33.990 203 127 4 23 225 1 196 1.69e-22 92.4
MS.gene36342.t1 AT2G45960 35.096 208 117 6 20 216 52 252 2.72e-22 93.2
MS.gene36342.t1 AT2G45960 35.211 213 120 6 15 216 47 252 4.43e-22 92.8
MS.gene36342.t1 AT1G31885 35.789 190 111 3 53 234 17 203 3.92e-21 89.7
MS.gene36342.t1 AT2G39010 35.882 170 92 5 20 177 38 202 3.27e-20 86.3
MS.gene36342.t1 AT4G00430 34.857 175 101 4 15 182 48 216 2.24e-17 78.6
MS.gene36342.t1 AT2G34390 31.197 234 144 6 14 240 42 265 9.11e-17 78.2
MS.gene36342.t1 AT2G34390 31.556 225 137 6 23 240 9 223 6.86e-16 75.1
MS.gene36342.t1 AT3G06100 35.772 123 77 2 104 226 44 164 2.77e-14 69.7
MS.gene36342.t1 AT4G19030 30.159 189 110 5 13 190 48 225 2.39e-11 62.0

Find 78 sgRNAs with CRISPR-Local

Find 92 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGACCTTTGGGTTGGCTATT+GGG 0.186937 2.2:-2168450 MS.gene36342:CDS
TATTGGGTTGGACCTCTTAT+TGG 0.194787 2.2:-2167960 MS.gene36342:CDS
GTGACCTTTGGGTTGGCTAT+TGG 0.197100 2.2:-2168451 MS.gene36342:CDS
TACTGGATTGCACAACTTCT+TGG 0.270070 2.2:-2168397 MS.gene36342:CDS
GTCCCTAATGATCCTTTCTT+AGG 0.271255 2.2:+2168119 None:intergenic
ACCATAACAACTGGATCTAT+TGG 0.279624 2.2:-2167977 MS.gene36342:CDS
GTCAACCCAGCTGTGACCTT+TGG 0.284953 2.2:-2168463 MS.gene36342:CDS
CTTTCAGCGTGAGCTCCATT+AGG 0.302297 2.2:-2168888 MS.gene36342:CDS
CCTATCCACAGTGTTGCTTC+TGG 0.305795 2.2:-2168224 MS.gene36342:CDS
ATGAATCCGGCACGTTCATT+TGG 0.314171 2.2:-2168023 MS.gene36342:CDS
GTTGGTTCAGCCATAGCTTA+TGG 0.316330 2.2:-2168817 MS.gene36342:intron
ACAGAAATTATCATAACATT+TGG 0.330200 2.2:-2168176 MS.gene36342:CDS
GATCCTAAGAAAGGATCATT+AGG 0.331020 2.2:-2168122 MS.gene36342:CDS
ACCTCTTATTGGTGGTGGTT+TGG 0.336316 2.2:-2167949 MS.gene36342:CDS
GGTTTGGCTGGTGTCATCTA+TGG 0.353100 2.2:-2167933 MS.gene36342:CDS
CCCAATAGATCCAGTTGTTA+TGG 0.363853 2.2:+2167976 None:intergenic
ACAATTGCACCAATTGCTAT+TGG 0.368535 2.2:-2168098 MS.gene36342:CDS
CTCAGCAACATAAGCCCTAA+TGG 0.371163 2.2:+2168873 None:intergenic
CTTATTGGTGGTGGTTTGGC+TGG 0.371194 2.2:-2167945 MS.gene36342:CDS
ATTGCTATTGGTTTGATTGT+TGG 0.383502 2.2:-2168086 MS.gene36342:CDS
TCAACCCAGCTGTGACCTTT+GGG 0.383612 2.2:-2168462 MS.gene36342:CDS
TCTGTTGGAGCCAACATATC+TGG 0.390137 2.2:-2168493 MS.gene36342:CDS
TTTCAGCGTGAGCTCCATTA+GGG 0.391328 2.2:-2168887 MS.gene36342:CDS
GTTGCTTCTGGTGTTGGAGC+TGG 0.401927 2.2:-2168212 MS.gene36342:CDS
TGAATCCGGCACGTTCATTT+GGG 0.407305 2.2:-2168022 MS.gene36342:CDS
ATGGGTCGTGGCATAGCCTT+TGG 0.411367 2.2:-2168925 MS.gene36342:CDS
CACAGTGTTGCTTCTGGTGT+TGG 0.413388 2.2:-2168218 MS.gene36342:CDS
GACCTTTGGGTTGGCTATTG+GGG 0.420075 2.2:-2168449 MS.gene36342:CDS
GCCCTCAGACCATGTACCTT+TGG 0.420648 2.2:-2167898 MS.gene36342:CDS
CCATAACAACTGGATCTATT+GGG 0.423483 2.2:-2167976 MS.gene36342:CDS
CTCTGGTGGTTCAATGAATC+CGG 0.425020 2.2:-2168036 MS.gene36342:CDS
CTCCTCAAGTTTGCCACAGG+AGG 0.433870 2.2:-2168355 MS.gene36342:CDS
TCCTCACTGGTATCTTCTAC+TGG 0.438665 2.2:-2168414 MS.gene36342:CDS
GTGGTGACTACCATAACAAC+TGG 0.450298 2.2:-2167986 MS.gene36342:CDS
GCCAACCCAAAGGTCACAGC+TGG 0.459612 2.2:+2168457 None:intergenic
GGTGCAACTCTTGATCCTGC+TGG 0.463582 2.2:-2168565 MS.gene36342:CDS
TGGGTTGGACCTCTTATTGG+TGG 0.464450 2.2:-2167957 MS.gene36342:CDS
AATTATCATAACATTTGGAT+TGG 0.465289 2.2:-2168171 MS.gene36342:CDS
TTTGCAGCTAAGTTGACATC+AGG 0.466178 2.2:-2168586 MS.gene36342:intron
GTTGGACCTCTTATTGGTGG+TGG 0.469086 2.2:-2167954 MS.gene36342:CDS
ACAATCAAACCAATAGCAAT+TGG 0.470369 2.2:+2168089 None:intergenic
GAGGAGAAAGCATGCCACTA+TGG 0.473275 2.2:+2168372 None:intergenic
CAAGTTTGCCACAGGAGGCT+TGG 0.473516 2.2:-2168350 MS.gene36342:intron
TTAGCTGCAGGACCATTCTC+TGG 0.477678 2.2:-2168053 MS.gene36342:CDS
CCCAGCTGTGACCTTTGGGT+TGG 0.492707 2.2:-2168458 MS.gene36342:CDS
GCCAAACCACCACCAATAAG+AGG 0.493921 2.2:+2167948 None:intergenic
ACAACTTCTTGGTTCCATAG+TGG 0.497833 2.2:-2168386 MS.gene36342:CDS
GTAGCAGTTGCTGTTTGTCA+TGG 0.500293 2.2:-2168538 MS.gene36342:CDS
TCTGGTGTTGGAGCTGGTGA+AGG 0.508041 2.2:-2168206 MS.gene36342:CDS
TTTCTCCTCAAGTTTGCCAC+AGG 0.511598 2.2:-2168358 MS.gene36342:CDS
ATCCTAAGAAAGGATCATTA+GGG 0.512697 2.2:-2168121 MS.gene36342:CDS
TTCATTGAACCACCAGAGAA+TGG 0.521007 2.2:+2168041 None:intergenic
TTTGGGCCTGCAGTTGTAAG+TGG 0.525678 2.2:-2168005 MS.gene36342:CDS
ACCTTTGGGTTGGCTATTGG+GGG 0.530941 2.2:-2168448 MS.gene36342:CDS
AACAACTGGATCTATTGGGT+TGG 0.532605 2.2:-2167972 MS.gene36342:CDS
GGTGCCAACATCTTAGCTGC+AGG 0.533016 2.2:-2168065 MS.gene36342:CDS
GACATGCCCACCAGATATGT+TGG 0.540645 2.2:+2168483 None:intergenic
AATCACTAGCCAAAGGTACA+TGG 0.550844 2.2:+2167889 None:intergenic
TTTCTTAGGATCAGCTGCTG+TGG 0.561728 2.2:+2168133 None:intergenic
AGCCTCCTGTGGCAAACTTG+AGG 0.564648 2.2:+2168353 None:intergenic
ACAGCAGCTGATCCTAAGAA+AGG 0.565051 2.2:-2168131 MS.gene36342:CDS
TAGTCACCACTTACAACTGC+AGG 0.580347 2.2:+2167999 None:intergenic
GCAACTGCTACTAATCCAGC+AGG 0.581333 2.2:+2168550 None:intergenic
AAACTTGTGTAGATGGGTCG+TGG 0.585470 2.2:-2168937 None:intergenic
AGCCAAAGGTACATGGTCTG+AGG 0.586441 2.2:+2167896 None:intergenic
GGACAGATCACTATCCTCAC+TGG 0.593122 2.2:-2168427 MS.gene36342:CDS
GTTGGAGCCAACATATCTGG+TGG 0.593687 2.2:-2168490 MS.gene36342:CDS
GCCAAAGGTACATGGTCTGA+GGG 0.595712 2.2:+2167897 None:intergenic
GCAGGCCCAAATGAACGTGC+CGG 0.597880 2.2:+2168017 None:intergenic
GCTGCAGGACCATTCTCTGG+TGG 0.598201 2.2:-2168050 MS.gene36342:CDS
CCAGAAGCAACACTGTGGAT+AGG 0.616969 2.2:+2168224 None:intergenic
TGGTCCTGCAGCTAAGATGT+TGG 0.619690 2.2:+2168061 None:intergenic
AGAATCATCAAAGCGTCCAA+AGG 0.628384 2.2:+2168909 None:intergenic
CCAACCCAAAGGTCACAGCT+GGG 0.647316 2.2:+2168458 None:intergenic
TTGGAGCCAACATATCTGGT+GGG 0.650760 2.2:-2168489 MS.gene36342:CDS
TAAACATACCAAGCCTCCTG+TGG 0.686094 2.2:+2168342 None:intergenic
CAACACCAGAAGCAACACTG+TGG 0.753730 2.2:+2168219 None:intergenic
TCCAGTAGAAGATACCAGTG+AGG 0.755394 2.2:+2168413 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTTATTGTACTATTT+AGG + chr2.2:2168137-2168156 None:intergenic 10.0%
!!! TGATGTTTTAAAATTCAAAA+AGG + chr2.2:2168518-2168537 None:intergenic 15.0%
!! AATTATCATAACATTTGGAT+TGG - chr2.2:2168638-2168657 MS.gene36342:intron 20.0%
!! ACAGAAATTATCATAACATT+TGG - chr2.2:2168633-2168652 MS.gene36342:intron 20.0%
!! TTCAATGAAATATCTTATCA+TGG + chr2.2:2168104-2168123 None:intergenic 20.0%
! AAAAAACTAACCATAAGCTA+TGG + chr2.2:2168005-2168024 None:intergenic 25.0%
! AAATAACAAAGTTGGAGTTA+TGG - chr2.2:2168173-2168192 MS.gene36342:CDS 25.0%
! TATGTTGCAAATAACAAAGT+TGG - chr2.2:2168165-2168184 MS.gene36342:CDS 25.0%
!!! GTACAAAGTTTTTAAGTGTT+TGG + chr2.2:2168202-2168221 None:intergenic 25.0%
ACAATCAAACCAATAGCAAT+TGG + chr2.2:2168723-2168742 None:intergenic 30.0%
ATCCTAAGAAAGGATCATTA+GGG - chr2.2:2168688-2168707 MS.gene36342:intron 30.0%
GGTCATATATAATCTTGATG+TGG + chr2.2:2168050-2168069 None:intergenic 30.0%
! GTATTACTTTAGAAGTTGCA+TGG + chr2.2:2168071-2168090 None:intergenic 30.0%
!! ATTGCTATTGGTTTGATTGT+TGG - chr2.2:2168723-2168742 MS.gene36342:intron 30.0%
ACAATTGCACCAATTGCTAT+TGG - chr2.2:2168711-2168730 MS.gene36342:intron 35.0%
ACACAAGATACAGTCAGTTA+TGG + chr2.2:2168547-2168566 None:intergenic 35.0%
ACCAGCAAAAACAAAGATCA+AGG + chr2.2:2167972-2167991 None:intergenic 35.0%
ACCATAACAACTGGATCTAT+TGG - chr2.2:2168832-2168851 MS.gene36342:CDS 35.0%
CCATAACAACTGGATCTATT+GGG - chr2.2:2168833-2168852 MS.gene36342:CDS 35.0%
GATCCTAAGAAAGGATCATT+AGG - chr2.2:2168687-2168706 MS.gene36342:intron 35.0%
!!! ACCTTGATCTTTGTTTTTGC+TGG - chr2.2:2167968-2167987 MS.gene36342:CDS 35.0%
!!! ATCTTTGTTTTTGCTGGTGT+TGG - chr2.2:2167974-2167993 MS.gene36342:CDS 35.0%
!!! CTTTTTGTTGCTGTTTCTGT+TGG - chr2.2:2168301-2168320 MS.gene36342:intron 35.0%
AACAACTGGATCTATTGGGT+TGG - chr2.2:2168837-2168856 MS.gene36342:CDS 40.0%
ACAACTTCTTGGTTCCATAG+TGG - chr2.2:2168423-2168442 MS.gene36342:CDS 40.0%
CCCAATAGATCCAGTTGTTA+TGG + chr2.2:2168836-2168855 None:intergenic 40.0%
GTCCCTAATGATCCTTTCTT+AGG + chr2.2:2168693-2168712 None:intergenic 40.0%
TACTGGATTGCACAACTTCT+TGG - chr2.2:2168412-2168431 MS.gene36342:CDS 40.0%
TTCATTGAACCACCAGAGAA+TGG + chr2.2:2168771-2168790 None:intergenic 40.0%
! AATCACTAGCCAAAGGTACA+TGG + chr2.2:2168923-2168942 None:intergenic 40.0%
! AGAATCATCAAAGCGTCCAA+AGG + chr2.2:2167903-2167922 None:intergenic 40.0%
! TTTGCAGCTAAGTTGACATC+AGG - chr2.2:2168223-2168242 MS.gene36342:CDS 40.0%
!! TATTGGGTTGGACCTCTTAT+TGG - chr2.2:2168849-2168868 MS.gene36342:CDS 40.0%
ACAGCAGCTGATCCTAAGAA+AGG - chr2.2:2168678-2168697 MS.gene36342:intron 45.0%
ATGAATCCGGCACGTTCATT+TGG - chr2.2:2168786-2168805 MS.gene36342:intron 45.0%
CTCAGCAACATAAGCCCTAA+TGG + chr2.2:2167939-2167958 None:intergenic 45.0%
CTCTGGTGGTTCAATGAATC+CGG - chr2.2:2168773-2168792 MS.gene36342:intron 45.0%
GTGGTGACTACCATAACAAC+TGG - chr2.2:2168823-2168842 MS.gene36342:CDS 45.0%
TAAACATACCAAGCCTCCTG+TGG + chr2.2:2168470-2168489 None:intergenic 45.0%
TAGTCACCACTTACAACTGC+AGG + chr2.2:2168813-2168832 None:intergenic 45.0%
TCCAGTAGAAGATACCAGTG+AGG + chr2.2:2168399-2168418 None:intergenic 45.0%
TCCTCACTGGTATCTTCTAC+TGG - chr2.2:2168395-2168414 MS.gene36342:CDS 45.0%
TCTGTTGGAGCCAACATATC+TGG - chr2.2:2168316-2168335 MS.gene36342:intron 45.0%
TGAATCCGGCACGTTCATTT+GGG - chr2.2:2168787-2168806 MS.gene36342:intron 45.0%
TTGGAGCCAACATATCTGGT+GGG - chr2.2:2168320-2168339 MS.gene36342:intron 45.0%
TTTCAGCGTGAGCTCCATTA+GGG - chr2.2:2167922-2167941 MS.gene36342:CDS 45.0%
TTTCTCCTCAAGTTTGCCAC+AGG - chr2.2:2168451-2168470 MS.gene36342:CDS 45.0%
TTTCTTAGGATCAGCTGCTG+TGG + chr2.2:2168679-2168698 None:intergenic 45.0%
! GTTGGTTCAGCCATAGCTTA+TGG - chr2.2:2167992-2168011 MS.gene36342:CDS 45.0%
!! ACCTCTTATTGGTGGTGGTT+TGG - chr2.2:2168860-2168879 MS.gene36342:CDS 45.0%
!! GTAGCAGTTGCTGTTTGTCA+TGG - chr2.2:2168271-2168290 MS.gene36342:intron 45.0%
!! TGACCTTTGGGTTGGCTATT+GGG - chr2.2:2168359-2168378 MS.gene36342:CDS 45.0%
CAACACCAGAAGCAACACTG+TGG + chr2.2:2168593-2168612 None:intergenic 50.0%
CCAGAAGCAACACTGTGGAT+AGG + chr2.2:2168588-2168607 None:intergenic 50.0%
CTTTCAGCGTGAGCTCCATT+AGG - chr2.2:2167921-2167940 MS.gene36342:CDS 50.0%
GACATGCCCACCAGATATGT+TGG + chr2.2:2168329-2168348 None:intergenic 50.0%
GCAACTGCTACTAATCCAGC+AGG + chr2.2:2168262-2168281 None:intergenic 50.0%
GCCAAACCACCACCAATAAG+AGG + chr2.2:2168864-2168883 None:intergenic 50.0%
GGACAGATCACTATCCTCAC+TGG - chr2.2:2168382-2168401 MS.gene36342:CDS 50.0%
GTTGGACCTCTTATTGGTGG+TGG - chr2.2:2168855-2168874 MS.gene36342:CDS 50.0%
GTTGGAGCCAACATATCTGG+TGG - chr2.2:2168319-2168338 MS.gene36342:intron 50.0%
TCAACCCAGCTGTGACCTTT+GGG - chr2.2:2168347-2168366 MS.gene36342:intron 50.0%
TGGTCCTGCAGCTAAGATGT+TGG + chr2.2:2168751-2168770 None:intergenic 50.0%
TTAGCTGCAGGACCATTCTC+TGG - chr2.2:2168756-2168775 MS.gene36342:intron 50.0%
TTTGGGCCTGCAGTTGTAAG+TGG - chr2.2:2168804-2168823 MS.gene36342:intron 50.0%
! AGCCAAAGGTACATGGTCTG+AGG + chr2.2:2168916-2168935 None:intergenic 50.0%
! GAGGAGAAAGCATGCCACTA+TGG + chr2.2:2168440-2168459 None:intergenic 50.0%
! GCCAAAGGTACATGGTCTGA+GGG + chr2.2:2168915-2168934 None:intergenic 50.0%
! TGGGTTGGACCTCTTATTGG+TGG - chr2.2:2168852-2168871 MS.gene36342:CDS 50.0%
!! ACCTTTGGGTTGGCTATTGG+GGG - chr2.2:2168361-2168380 MS.gene36342:CDS 50.0%
!! CACAGTGTTGCTTCTGGTGT+TGG - chr2.2:2168591-2168610 MS.gene36342:intron 50.0%
!! CCTATCCACAGTGTTGCTTC+TGG - chr2.2:2168585-2168604 MS.gene36342:intron 50.0%
!! CTTATTGGTGGTGGTTTGGC+TGG - chr2.2:2168864-2168883 MS.gene36342:CDS 50.0%
!! GACCTTTGGGTTGGCTATTG+GGG - chr2.2:2168360-2168379 MS.gene36342:CDS 50.0%
!! GGTTTGGCTGGTGTCATCTA+TGG - chr2.2:2168876-2168895 MS.gene36342:CDS 50.0%
!! GTGACCTTTGGGTTGGCTAT+TGG - chr2.2:2168358-2168377 MS.gene36342:CDS 50.0%
AGCCTCCTGTGGCAAACTTG+AGG + chr2.2:2168459-2168478 None:intergenic 55.0%
ATGGGTCGTGGCATAGCCTT+TGG - chr2.2:2167884-2167903 MS.gene36342:CDS 55.0%
CAAGTTTGCCACAGGAGGCT+TGG - chr2.2:2168459-2168478 MS.gene36342:CDS 55.0%
CCAACCCAAAGGTCACAGCT+GGG + chr2.2:2168354-2168373 None:intergenic 55.0%
CTCCTCAAGTTTGCCACAGG+AGG - chr2.2:2168454-2168473 MS.gene36342:CDS 55.0%
GCCCTCAGACCATGTACCTT+TGG - chr2.2:2168911-2168930 MS.gene36342:CDS 55.0%
GGTGCAACTCTTGATCCTGC+TGG - chr2.2:2168244-2168263 MS.gene36342:intron 55.0%
GGTGCCAACATCTTAGCTGC+AGG - chr2.2:2168744-2168763 MS.gene36342:intron 55.0%
GTCAACCCAGCTGTGACCTT+TGG - chr2.2:2168346-2168365 MS.gene36342:intron 55.0%
TCCCCCAATAGCCAACCCAA+AGG + chr2.2:2168365-2168384 None:intergenic 55.0%
! GTTGCTTCTGGTGTTGGAGC+TGG - chr2.2:2168597-2168616 MS.gene36342:intron 55.0%
! TCTGGTGTTGGAGCTGGTGA+AGG - chr2.2:2168603-2168622 MS.gene36342:intron 55.0%
CCCAGCTGTGACCTTTGGGT+TGG - chr2.2:2168351-2168370 MS.gene36342:CDS 60.0%
GCAGGCCCAAATGAACGTGC+CGG + chr2.2:2168795-2168814 None:intergenic 60.0%
GCCAACCCAAAGGTCACAGC+TGG + chr2.2:2168355-2168374 None:intergenic 60.0%
GCTGCAGGACCATTCTCTGG+TGG - chr2.2:2168759-2168778 MS.gene36342:intron 60.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 2167884 2168947 2167884 ID=MS.gene36342
chr2.2 mRNA 2167884 2168947 2167884 ID=MS.gene36342.t1;Parent=MS.gene36342
chr2.2 exon 2168818 2168947 2168818 ID=MS.gene36342.t1.exon1;Parent=MS.gene36342.t1
chr2.2 CDS 2168818 2168947 2168818 ID=cds.MS.gene36342.t1;Parent=MS.gene36342.t1
chr2.2 exon 2168351 2168601 2168351 ID=MS.gene36342.t1.exon2;Parent=MS.gene36342.t1
chr2.2 CDS 2168351 2168601 2168351 ID=cds.MS.gene36342.t1;Parent=MS.gene36342.t1
chr2.2 exon 2167884 2168252 2167884 ID=MS.gene36342.t1.exon3;Parent=MS.gene36342.t1
chr2.2 CDS 2167884 2168252 2167884 ID=cds.MS.gene36342.t1;Parent=MS.gene36342.t1
Gene Sequence

>MS.gene36342

ATGGGTCGTGGCATAGCCTTTGGACGCTTTGATGATTCTTTCAGCGTGAGCTCCATTAGGGCTTATGTTGCTGAGTTCATCTCAACCTTGATCTTTGTTTTTGCTGGTGTTGGTTCAGCCATAGCTTATGGTTAGTTTTTTTCTTCTTTACAAATTTATTAAACCACATCAAGATTATATATGACCATGCAACTTCTAAAGTAATACATTGTTTTTACCATGATAAGATATTTCATTGAAGAAAATGACACCTAAATAGTACAATAAAAAAATGCAGACTATATGTTGCAAATAACAAAGTTGGAGTTATGGAAACCAAACACTTAAAAACTTTGTACTTTTGCAGCTAAGTTGACATCAGGTGCAACTCTTGATCCTGCTGGATTAGTAGCAGTTGCTGTTTGTCATGGTTTTGCTCTTTTTGTTGCTGTTTCTGTTGGAGCCAACATATCTGGTGGGCATGTCAACCCAGCTGTGACCTTTGGGTTGGCTATTGGGGGACAGATCACTATCCTCACTGGTATCTTCTACTGGATTGCACAACTTCTTGGTTCCATAGTGGCATGCTTTCTCCTCAAGTTTGCCACAGGAGGCTTGGTATGTTTATCATTCTTGCATCACAAGTTTCATACCTTTTTGAATTTTAAAACATCAATAGTTCCATAACTGACTGTATCTTGTGTATTTGTTTTCAGACAATTCCTATCCACAGTGTTGCTTCTGGTGTTGGAGCTGGTGAAGGAGTTGTGACAGAAATTATCATAACATTTGGATTGGTGTACACAGTATATGCCACAGCAGCTGATCCTAAGAAAGGATCATTAGGGACAATTGCACCAATTGCTATTGGTTTGATTGTTGGTGCCAACATCTTAGCTGCAGGACCATTCTCTGGTGGTTCAATGAATCCGGCACGTTCATTTGGGCCTGCAGTTGTAAGTGGTGACTACCATAACAACTGGATCTATTGGGTTGGACCTCTTATTGGTGGTGGTTTGGCTGGTGTCATCTATGGCTATGTCTTCATGCCCTCAGACCATGTACCTTTGGCTAGTGATTTTTGA
Protein sequence

>MS.gene36342.t1

MGRGIAFGRFDDSFSVSSIRAYVAEFISTLIFVFAGVGSAIAYAKLTSGATLDPAGLVAVAVCHGFALFVAVSVGANISGGHVNPAVTFGLAIGGQITILTGIFYWIAQLLGSIVACFLLKFATGGLTIPIHSVASGVGAGEGVVTEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGLIVGANILAAGPFSGGSMNPARSFGPAVVSGDYHNNWIYWVGPLIGGGLAGVIYGYVFMPSDHVPLASDF