AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene36789

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene36789.t1 MTR_8g013680 97.177 248 7 0 1 248 1 248 7.25e-171 471
MS.gene36789.t1 MTR_2g101370 84.146 246 39 0 3 248 4 249 7.72e-147 410
MS.gene36789.t1 MTR_5g012810 76.613 248 57 1 1 248 1 247 1.06e-120 344
MS.gene36789.t1 MTR_4g063090 62.832 226 81 1 24 246 26 251 2.58e-93 275
MS.gene36789.t1 MTR_1g006490 57.258 248 100 3 1 247 1 243 2.91e-91 269
MS.gene36789.t1 MTR_1g115405 57.085 247 104 2 4 248 6 252 5.22e-89 264
MS.gene36789.t1 MTR_1g006590 55.242 248 105 3 1 247 1 243 2.02e-86 257
MS.gene36789.t1 MTR_7g103030 60.643 249 96 2 1 248 3 250 2.28e-85 254
MS.gene36789.t1 MTR_7g023350 60.684 234 90 2 17 248 19 252 7.01e-85 253
MS.gene36789.t1 MTR_1g077540 50.000 250 118 1 5 247 7 256 1.93e-83 250
MS.gene36789.t1 MTR_6g069040 53.036 247 112 1 5 247 7 253 4.32e-78 236
MS.gene36789.t1 MTR_2g060360 45.041 242 132 1 1 242 1 241 1.08e-73 225
MS.gene36789.t1 MTR_7g101190 40.586 239 125 6 19 242 39 275 1.96e-39 138
MS.gene36789.t1 MTR_2g094270 38.824 255 120 8 9 238 30 273 2.87e-39 137
MS.gene36789.t1 MTR_3g118010 41.453 234 116 7 19 238 37 263 1.55e-38 135
MS.gene36789.t1 MTR_4g059390 39.496 238 121 7 19 238 39 271 1.59e-35 128
MS.gene36789.t1 MTR_5g063930 37.339 233 132 6 9 238 27 248 2.92e-35 127
MS.gene36789.t1 MTR_5g010150 37.917 240 131 7 11 238 46 279 2.48e-33 122
MS.gene36789.t1 MTR_5g082070 38.197 233 127 6 12 232 50 277 1.27e-31 118
MS.gene36789.t1 MTR_8g098375 36.250 240 135 7 11 238 46 279 3.07e-31 117
MS.gene36789.t1 MTR_2g094270 38.393 224 106 6 9 210 30 243 4.70e-31 115
MS.gene36789.t1 MTR_3g070210 37.238 239 132 8 12 238 50 282 9.25e-31 115
MS.gene36789.t1 MTR_2g017590 34.061 229 142 5 18 246 35 254 1.59e-29 112
MS.gene36789.t1 MTR_2g017620 34.934 229 138 5 10 238 17 234 3.40e-29 110
MS.gene36789.t1 MTR_4g415300 36.667 240 131 8 12 238 51 282 4.13e-29 111
MS.gene36789.t1 MTR_2g017620 34.934 229 138 5 10 238 31 248 6.49e-29 110
MS.gene36789.t1 MTR_4g006730 36.715 207 113 5 23 224 79 272 3.44e-28 109
MS.gene36789.t1 MTR_1g097840 35.398 226 126 6 23 242 78 289 4.61e-28 108
MS.gene36789.t1 MTR_3g008920 36.864 236 125 8 18 246 25 243 6.34e-28 107
MS.gene36789.t1 MTR_2g017660 33.766 231 144 4 18 248 38 259 1.07e-27 107
MS.gene36789.t1 MTR_2g104940 36.715 207 113 4 23 224 84 277 1.90e-27 107
MS.gene36789.t1 MTR_8g087710 33.188 229 144 4 18 246 38 257 3.29e-27 106
MS.gene36789.t1 MTR_1g095070 38.144 194 85 6 67 238 25 205 4.84e-27 104
MS.gene36789.t1 MTR_2g017610 32.314 229 146 5 18 246 37 256 1.55e-26 104
MS.gene36789.t1 MTR_5g079570 36.087 230 129 8 18 243 39 254 1.90e-26 103
MS.gene36789.t1 MTR_2g017570 31.878 229 147 5 18 246 37 256 4.77e-26 102
MS.gene36789.t1 MTR_8g087720 32.353 238 150 4 7 241 23 252 8.97e-26 102
MS.gene36789.t1 MTR_4g006730 35.859 198 109 5 32 224 1 185 1.00e-25 100
MS.gene36789.t1 MTR_4g006630 35.859 198 109 5 32 224 1 185 1.12e-25 100
MS.gene36789.t1 MTR_4g084880 32.751 229 147 3 18 246 34 255 2.72e-25 100
MS.gene36789.t1 MTR_7g010650 34.483 232 137 6 13 241 31 250 2.98e-25 100
MS.gene36789.t1 MTR_1g070385 33.778 225 131 7 22 241 65 276 5.10e-25 103
MS.gene36789.t1 MTR_2g017620 37.423 163 98 2 76 238 9 167 7.58e-23 92.4
MS.gene36789.t1 MTR_3g070210 35.961 203 118 5 14 207 50 249 1.40e-22 94.0
MS.gene36789.t1 MTR_4g059390 38.235 170 90 4 19 177 39 204 1.04e-20 87.0
MS.gene36789.t1 MTR_1g095070 38.690 168 71 5 67 215 25 179 1.64e-20 86.3
MS.gene36789.t1 MTR_5g010150 36.047 172 100 4 11 177 46 212 1.97e-18 81.3
MS.gene36789.t1 MTR_8g098375 34.286 175 105 4 11 180 46 215 9.47e-18 79.7
MS.gene36789.t1 MTR_4g415300 34.946 186 106 6 12 191 51 227 4.98e-16 75.1
MS.gene36789.t1 MTR_3g070210 34.706 170 101 5 12 176 50 214 5.50e-16 74.7
MS.gene36789.t1 MTR_4g006730 35.465 172 93 5 23 189 79 237 7.97e-15 72.4
MS.gene36789.t1 MTR_8g468730 35.922 103 47 2 141 243 5 88 1.35e-13 65.5
MS.gene36789.t1 MTR_1g097840 32.948 173 96 6 23 189 78 236 1.27e-11 63.5
MS.gene36789.t1 MTR_4g075570 27.451 255 150 8 7 235 33 278 1.28e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene36789.t1 AT3G16240 81.200 250 45 2 1 248 1 250 9.94e-142 397
MS.gene36789.t1 AT5G47450 72.314 242 67 0 1 242 1 242 1.28e-121 346
MS.gene36789.t1 AT4G17340 74.074 243 62 1 1 243 1 242 3.16e-114 328
MS.gene36789.t1 AT2G36830 63.008 246 90 1 4 248 6 251 5.64e-102 296
MS.gene36789.t1 AT3G26520 62.295 244 90 2 7 248 10 253 6.81e-99 289
MS.gene36789.t1 AT4G01470 58.704 247 100 2 4 248 6 252 5.57e-92 271
MS.gene36789.t1 AT2G25810 54.656 247 108 2 1 247 1 243 7.09e-82 246
MS.gene36789.t1 AT1G73190 52.734 256 107 2 6 247 11 266 3.48e-80 242
MS.gene36789.t1 AT1G17810 51.373 255 111 2 6 247 11 265 1.55e-75 230
MS.gene36789.t1 AT3G47440 45.726 234 126 1 8 241 12 244 1.50e-68 212
MS.gene36789.t1 AT4G35100 41.322 242 119 8 11 238 32 264 1.41e-39 138
MS.gene36789.t1 AT4G35100 41.322 242 119 8 11 238 32 264 1.41e-39 138
MS.gene36789.t1 AT2G37170 38.735 253 137 8 10 246 28 278 6.32e-37 132
MS.gene36789.t1 AT2G37170 38.735 253 137 8 10 246 71 321 7.88e-37 132
MS.gene36789.t1 AT5G60660 39.149 235 126 7 19 238 39 271 4.01e-36 129
MS.gene36789.t1 AT3G54820 39.831 236 123 8 19 238 38 270 4.47e-36 129
MS.gene36789.t1 AT3G53420 39.344 244 130 7 19 246 39 280 1.98e-35 128
MS.gene36789.t1 AT3G53420 39.344 244 130 7 19 246 39 280 1.98e-35 128
MS.gene36789.t1 AT2G37180 39.024 246 128 8 19 246 37 278 3.42e-35 127
MS.gene36789.t1 AT2G16850 40.506 237 114 9 19 238 36 262 6.06e-35 126
MS.gene36789.t1 AT2G39010 39.241 237 123 7 19 238 38 270 7.61e-35 126
MS.gene36789.t1 AT4G00430 38.017 242 127 8 11 238 47 279 5.84e-32 119
MS.gene36789.t1 AT1G52180 64.516 93 33 0 119 211 29 121 2.59e-31 112
MS.gene36789.t1 AT1G01620 37.860 243 126 8 11 238 46 278 2.66e-31 117
MS.gene36789.t1 AT4G23400 38.075 239 131 8 11 238 47 279 3.80e-31 116
MS.gene36789.t1 AT3G61430 37.553 237 124 7 11 232 46 273 2.86e-30 114
MS.gene36789.t1 AT3G61430 37.553 237 124 7 11 232 46 273 2.86e-30 114
MS.gene36789.t1 AT2G45960 37.288 236 124 7 12 232 47 273 2.97e-29 111
MS.gene36789.t1 AT1G01620 39.196 199 100 6 55 238 14 206 2.46e-27 105
MS.gene36789.t1 AT4G10380 34.426 244 136 7 3 235 56 286 7.44e-27 105
MS.gene36789.t1 AT1G80760 34.978 223 127 5 23 240 84 293 8.67e-27 105
MS.gene36789.t1 AT4G19030 33.745 243 143 7 12 246 48 280 1.04e-26 105
MS.gene36789.t1 AT5G37820 33.333 231 139 4 19 246 43 261 2.74e-26 103
MS.gene36789.t1 AT5G37820 33.333 231 139 4 19 246 79 297 3.88e-26 104
MS.gene36789.t1 AT1G31885 33.750 240 135 6 18 246 42 268 4.82e-26 103
MS.gene36789.t1 AT5G37810 32.900 231 140 4 19 246 43 261 1.57e-25 101
MS.gene36789.t1 AT4G18910 34.156 243 142 7 12 246 45 277 4.65e-25 100
MS.gene36789.t1 AT3G06100 31.064 235 155 4 6 240 33 260 2.56e-24 98.6
MS.gene36789.t1 AT3G06100 32.420 219 141 4 22 240 1 212 3.75e-23 94.4
MS.gene36789.t1 AT1G31885 33.921 227 126 6 31 246 1 214 4.67e-23 95.1
MS.gene36789.t1 AT2G45960 36.842 209 112 6 19 215 52 252 8.75e-22 91.7
MS.gene36789.t1 AT2G45960 37.500 208 109 6 12 207 47 245 1.23e-21 91.7
MS.gene36789.t1 AT2G39010 37.500 168 92 4 19 176 38 202 4.40e-19 83.2
MS.gene36789.t1 AT4G00430 35.393 178 100 5 11 181 47 216 3.00e-16 75.5
MS.gene36789.t1 AT3G06100 34.058 138 89 2 103 240 44 179 3.66e-16 74.7
MS.gene36789.t1 AT2G34390 31.982 222 136 6 18 232 47 260 4.17e-15 73.6
MS.gene36789.t1 AT2G34390 32.569 218 132 6 22 232 9 218 9.43e-15 72.0
MS.gene36789.t1 AT4G19030 31.892 185 110 6 12 188 48 224 4.12e-12 64.3

Find 76 sgRNAs with CRISPR-Local

Find 103 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTGGGCTGGGCCTCTTAT+TGG 0.180335 8.2:+79284893 MS.gene36789:CDS
GCAGTTGGTGCAAACATTTC+TGG 0.199557 8.2:+79284273 MS.gene36789:CDS
TACTGGATTGCTCAACTTCT+TGG 0.202544 8.2:+79284369 MS.gene36789:CDS
GTGCCTATTGCCCCTTTCTT+TGG 0.207140 8.2:-79284734 None:intergenic
CTTATTGGTGGTGGTTTGGC+TGG 0.220055 8.2:+79284908 MS.gene36789:CDS
ATGAACCCGGCAAGATCTTT+TGG 0.247257 8.2:+79284830 MS.gene36789:CDS
TTTGATGATTCTTTCAGTTT+TGG 0.267707 8.2:+79283584 MS.gene36789:CDS
TCCACGACAACTGGATCTAT+TGG 0.277829 8.2:+79284876 MS.gene36789:CDS
GTCAACCCTGCTGTCACCTT+TGG 0.291721 8.2:+79284303 MS.gene36789:CDS
GCCTCTTATTGGTGGTGGTT+TGG 0.315206 8.2:+79284904 MS.gene36789:CDS
GTCACCTTTGGATTGGCTCT+TGG 0.343040 8.2:+79284315 MS.gene36789:CDS
ACTGAAATCATCATAACATT+TGG 0.367367 8.2:+79284677 MS.gene36789:CDS
ATTGCCATTGGTTTCATTGT+TGG 0.375835 8.2:+79284767 MS.gene36789:CDS
GTGGAAATTTCCACGACAAC+TGG 0.386505 8.2:+79284867 MS.gene36789:CDS
TGAGATGAACTCAGCAATAT+AGG 0.386935 8.2:-79283618 None:intergenic
TTTGGGCCTGCAGTTGTTAG+TGG 0.387568 8.2:+79284848 MS.gene36789:CDS
CCACGACAACTGGATCTATT+GGG 0.398062 8.2:+79284877 MS.gene36789:CDS
AAGATGGCTGGCATAGCATT+TGG 0.399858 8.2:+79283557 None:intergenic
CCAAGCCTCCAGTGACAAAC+TGG 0.399981 8.2:-79284416 None:intergenic
AATCATCATAACATTTGGTT+TGG 0.400689 8.2:+79284682 MS.gene36789:CDS
GCAGCTGAAGTAGGACCTAT+TGG 0.405581 8.2:+79284644 MS.gene36789:CDS
TTTCTTCTCCAGTTTGTCAC+TGG 0.408023 8.2:+79284408 MS.gene36789:CDS
CCCTGCTGTCACCTTTGGAT+TGG 0.409091 8.2:+79284308 MS.gene36789:CDS
ACCTTTGGATTGGCTCTTGG+TGG 0.411041 8.2:+79284318 MS.gene36789:CDS
GATCCAAAGAAAGGGGCAAT+AGG 0.421974 8.2:+79284731 MS.gene36789:CDS
CCAGTTTGTCACTGGAGGCT+TGG 0.423778 8.2:+79284416 MS.gene36789:CDS
GCCAAACCACCACCAATAAG+AGG 0.426599 8.2:-79284905 None:intergenic
TGGGCTGGGCCTCTTATTGG+TGG 0.440850 8.2:+79284896 MS.gene36789:CDS
TTATTGGTGGTGGTTTGGCT+GGG 0.443536 8.2:+79284909 MS.gene36789:CDS
CATTGTTGGTGCCAACATAT+TGG 0.446875 8.2:+79284781 MS.gene36789:CDS
GCCAATCCAAAGGTGACAGC+AGG 0.452295 8.2:-79284309 None:intergenic
GCAGGCCCAAAAGATCTTGC+CGG 0.452714 8.2:-79284836 None:intergenic
TTCATTGACCCGCCAGAGAA+TGG 0.455291 8.2:-79284812 None:intergenic
ATCAGATGCAGCTCTTGATC+CGG 0.457116 8.2:+79284197 MS.gene36789:CDS
TCATCACTGGTATCTTCTAC+TGG 0.458106 8.2:+79284352 MS.gene36789:CDS
GACAACTGGATCTATTGGGC+TGG 0.462914 8.2:+79284881 MS.gene36789:CDS
CTAGCAATTGCTGTTTGCCA+TGG 0.464203 8.2:+79284228 MS.gene36789:CDS
TCAGTAACAACTCCTCCAAT+AGG 0.466361 8.2:-79284659 None:intergenic
CTTCTCCAGTTTGTCACTGG+AGG 0.467570 8.2:+79284411 MS.gene36789:CDS
CTGCAGGTCCATTCTCTGGC+GGG 0.479733 8.2:+79284804 MS.gene36789:CDS
GCTGGGCCTCTTATTGGTGG+TGG 0.488045 8.2:+79284899 MS.gene36789:CDS
TTGGCTGCAGGTCCATTCTC+TGG 0.490226 8.2:+79284800 MS.gene36789:CDS
GTTGGTTCAGCCATAGCCTA+TGG 0.499410 8.2:+79283665 MS.gene36789:CDS
ACAGTTGCACCCATTGCCAT+TGG 0.503181 8.2:+79284755 MS.gene36789:CDS
ACAATGAAACCAATGGCAAT+GGG 0.510446 8.2:-79284764 None:intergenic
TCAGCTGCCACACTGTGGAT+TGG 0.510734 8.2:-79284629 None:intergenic
CAGCAGCTGATCCAAAGAAA+GGG 0.511871 8.2:+79284723 MS.gene36789:CDS
GATGCAGCTCTTGATCCGGC+AGG 0.517337 8.2:+79284201 MS.gene36789:CDS
TTTCTTTGGATCAGCTGCTG+TGG 0.517451 8.2:-79284720 None:intergenic
AATCAAAAGTCACTAGAAAG+AGG 0.520771 8.2:-79284971 None:intergenic
CTCTGGCGGGTCAATGAACC+CGG 0.533684 8.2:+79284817 MS.gene36789:CDS
AACAATGAAACCAATGGCAA+TGG 0.533814 8.2:-79284765 None:intergenic
GCTGCAGGTCCATTCTCTGG+CGG 0.534374 8.2:+79284803 MS.gene36789:CDS
ACAGCAGCTGATCCAAAGAA+AGG 0.538310 8.2:+79284722 MS.gene36789:CDS
CAGGCCCAAAAGATCTTGCC+GGG 0.541468 8.2:-79284835 None:intergenic
GGTTTGGCTGGGCTTATCTA+CGG 0.542367 8.2:+79284920 MS.gene36789:CDS
TAGAAACTTCTGAAGATGGC+TGG 0.543796 8.2:+79283545 None:intergenic
AGAAAACTAACCATAGGCTA+TGG 0.558919 8.2:-79283675 None:intergenic
GGTGCCAACATATTGGCTGC+AGG 0.564331 8.2:+79284788 MS.gene36789:CDS
CCCAATAGATCCAGTTGTCG+TGG 0.571271 8.2:-79284877 None:intergenic
ACAACTGGATCTATTGGGCT+GGG 0.575806 8.2:+79284882 MS.gene36789:CDS
AAATTTCCACTAACAACTGC+AGG 0.577339 8.2:-79284854 None:intergenic
GAGAAGAAAACATGCAACAA+TGG 0.578089 8.2:-79284394 None:intergenic
CACAGTGTGGCAGCTGAAGT+AGG 0.582308 8.2:+79284635 MS.gene36789:CDS
GGACAGATTACAATCATCAC+TGG 0.586258 8.2:+79284339 MS.gene36789:CDS
TGGACCTGCAGCCAATATGT+TGG 0.594479 8.2:-79284792 None:intergenic
GCAATTGCTAGTAACCCTGC+CGG 0.612998 8.2:-79284216 None:intergenic
GCTGAAGTAGGACCTATTGG+AGG 0.620559 8.2:+79284647 MS.gene36789:CDS
ATGCAGCTCTTGATCCGGCA+GGG 0.626949 8.2:+79284202 MS.gene36789:CDS
GGCACCAACAATGAAACCAA+TGG 0.627058 8.2:-79284771 None:intergenic
CCAATCCAAAGGTGACAGCA+GGG 0.629836 8.2:-79284308 None:intergenic
AGCAGCTGATCCAAAGAAAG+GGG 0.630978 8.2:+79284724 MS.gene36789:CDS
TCCACCAAGAGCCAATCCAA+AGG 0.646031 8.2:-79284319 None:intergenic
GTTGGTGCAAACATTTCTGG+TGG 0.676373 8.2:+79284276 MS.gene36789:CDS
CTACTTCAGCTGCCACACTG+TGG 0.679427 8.2:-79284634 None:intergenic
GGAAACTCCAATCCACAGTG+TGG 0.736980 8.2:+79284622 MS.gene36789:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTAATATTGTGATTTGT+TGG + chr8.2:79284597-79284616 MS.gene36789:intron 15.0%
!!! TTAACTTCATTTTTTTAAGT+TGG + chr8.2:79284019-79284038 MS.gene36789:intron 15.0%
!! CATCAAAAATTCAACTTTAA+TGG - chr8.2:79283785-79283804 None:intergenic 20.0%
!!! ATACTGACTAATATTAGAAA+CGG - chr8.2:79283998-79284017 None:intergenic 20.0%
!!! TCATTTTTTTAAGTTGGAAA+GGG + chr8.2:79284025-79284044 MS.gene36789:intron 20.0%
!!! TTCATTTTTTTAAGTTGGAA+AGG + chr8.2:79284024-79284043 MS.gene36789:intron 20.0%
! AATACTATATACAAAGTCCA+AGG + chr8.2:79284515-79284534 MS.gene36789:intron 25.0%
! AATCATCATAACATTTGGTT+TGG + chr8.2:79284682-79284701 MS.gene36789:CDS 25.0%
! ACTATAATTCTAGTAGCAAT+GGG - chr8.2:79283752-79283771 None:intergenic 25.0%
! ACTGAAATCATCATAACATT+TGG + chr8.2:79284677-79284696 MS.gene36789:CDS 25.0%
! TACTATAATTCTAGTAGCAA+TGG - chr8.2:79283753-79283772 None:intergenic 25.0%
!! TATGATATTCTTTTTGTCCT+TGG - chr8.2:79284535-79284554 None:intergenic 25.0%
!!! TTTGATGATTCTTTCAGTTT+TGG + chr8.2:79283584-79283603 MS.gene36789:CDS 25.0%
AAGCATAGAAAACTAACCAT+AGG - chr8.2:79283684-79283703 None:intergenic 30.0%
ATAAAATTGCTCGCCAAAAT+TGG - chr8.2:79283970-79283989 None:intergenic 30.0%
CTATAATTCTAGTAGCAATG+GGG - chr8.2:79283751-79283770 None:intergenic 30.0%
TAAACGTTAGACGTCAAAAT+TGG + chr8.2:79283849-79283868 MS.gene36789:intron 30.0%
! ATTGTTAAAGACGCCAATTT+TGG + chr8.2:79283954-79283973 MS.gene36789:intron 30.0%
!! TAATATTGTGATTTGTTGGC+AGG + chr8.2:79284601-79284620 MS.gene36789:intron 30.0%
!! TGTTCTTTGACTTAATTTGC+AGG + chr8.2:79284165-79284184 MS.gene36789:intron 30.0%
!!! TTTCAGTTTTGGCTCAATTA+AGG + chr8.2:79283595-79283614 MS.gene36789:CDS 30.0%
AAATTTCCACTAACAACTGC+AGG - chr8.2:79284857-79284876 None:intergenic 35.0%
AACAATGAAACCAATGGCAA+TGG - chr8.2:79284768-79284787 None:intergenic 35.0%
AAGCTATGTAGCTAGATAAG+TGG - chr8.2:79284454-79284473 None:intergenic 35.0%
ACAATGAAACCAATGGCAAT+GGG - chr8.2:79284767-79284786 None:intergenic 35.0%
AGAAAACTAACCATAGGCTA+TGG - chr8.2:79283678-79283697 None:intergenic 35.0%
GAGAAGAAAACATGCAACAA+TGG - chr8.2:79284397-79284416 None:intergenic 35.0%
TGAGATGAACTCAGCAATAT+AGG - chr8.2:79283621-79283640 None:intergenic 35.0%
TGGCGTCTTTAACAATTAGA+CGG - chr8.2:79283950-79283969 None:intergenic 35.0%
TTGTAACCTCAAGAGACAAA+CGG - chr8.2:79284061-79284080 None:intergenic 35.0%
! CAACAAAAAGTGCAAAACCA+TGG - chr8.2:79284248-79284267 None:intergenic 35.0%
!! ATTGCCATTGGTTTCATTGT+TGG + chr8.2:79284767-79284786 MS.gene36789:CDS 35.0%
!!! ACTTTGCTCTTTGTTTTTGC+TGG + chr8.2:79283641-79283660 MS.gene36789:CDS 35.0%
GGACAGATTACAATCATCAC+TGG + chr8.2:79284339-79284358 MS.gene36789:CDS 40.0%
TAATTCTAGTAGCAATGGGG+TGG - chr8.2:79283748-79283767 None:intergenic 40.0%
TACTGGATTGCTCAACTTCT+TGG + chr8.2:79284369-79284388 MS.gene36789:CDS 40.0%
TCAGTAACAACTCCTCCAAT+AGG - chr8.2:79284662-79284681 None:intergenic 40.0%
TCATCACTGGTATCTTCTAC+TGG + chr8.2:79284352-79284371 MS.gene36789:CDS 40.0%
TTACAACCGTTTGTCTCTTG+AGG + chr8.2:79284052-79284071 MS.gene36789:intron 40.0%
TTTCTTCTCCAGTTTGTCAC+TGG + chr8.2:79284408-79284427 MS.gene36789:CDS 40.0%
!! CATTGTTGGTGCCAACATAT+TGG + chr8.2:79284781-79284800 MS.gene36789:CDS 40.0%
!! CTTTTTGTTGCTGTTGCAGT+TGG + chr8.2:79284258-79284277 MS.gene36789:CDS 40.0%
!!! CTCTTTGTTTTTGCTGGTGT+TGG + chr8.2:79283647-79283666 MS.gene36789:CDS 40.0%
ACAACTGGATCTATTGGGCT+GGG + chr8.2:79284882-79284901 MS.gene36789:CDS 45.0%
ACAGCAGCTGATCCAAAGAA+AGG + chr8.2:79284722-79284741 MS.gene36789:CDS 45.0%
AGCAGCTGATCCAAAGAAAG+GGG + chr8.2:79284724-79284743 MS.gene36789:CDS 45.0%
ATCAGATGCAGCTCTTGATC+CGG + chr8.2:79284197-79284216 MS.gene36789:CDS 45.0%
CAGCAGCTGATCCAAAGAAA+GGG + chr8.2:79284723-79284742 MS.gene36789:CDS 45.0%
CCACGACAACTGGATCTATT+GGG + chr8.2:79284877-79284896 MS.gene36789:CDS 45.0%
GATCCAAAGAAAGGGGCAAT+AGG + chr8.2:79284731-79284750 MS.gene36789:CDS 45.0%
GGCACCAACAATGAAACCAA+TGG - chr8.2:79284774-79284793 None:intergenic 45.0%
GTGGAAATTTCCACGACAAC+TGG + chr8.2:79284867-79284886 MS.gene36789:CDS 45.0%
TCCACGACAACTGGATCTAT+TGG + chr8.2:79284876-79284895 MS.gene36789:CDS 45.0%
TTTCTTTGGATCAGCTGCTG+TGG - chr8.2:79284723-79284742 None:intergenic 45.0%
! ATGAACCCGGCAAGATCTTT+TGG + chr8.2:79284830-79284849 MS.gene36789:CDS 45.0%
! GCAGTTGGTGCAAACATTTC+TGG + chr8.2:79284273-79284292 MS.gene36789:CDS 45.0%
! GTTGGTGCAAACATTTCTGG+TGG + chr8.2:79284276-79284295 MS.gene36789:CDS 45.0%
! TGAACCCGGCAAGATCTTTT+GGG + chr8.2:79284831-79284850 MS.gene36789:CDS 45.0%
!! CTAGCAATTGCTGTTTGCCA+TGG + chr8.2:79284228-79284247 MS.gene36789:CDS 45.0%
!! TTATTGGTGGTGGTTTGGCT+GGG + chr8.2:79284909-79284928 MS.gene36789:CDS 45.0%
ACAGTTGCACCCATTGCCAT+TGG + chr8.2:79284755-79284774 MS.gene36789:CDS 50.0%
CCAATCCAAAGGTGACAGCA+GGG - chr8.2:79284311-79284330 None:intergenic 50.0%
CCCAATAGATCCAGTTGTCG+TGG - chr8.2:79284880-79284899 None:intergenic 50.0%
CTTCTCCAGTTTGTCACTGG+AGG + chr8.2:79284411-79284430 MS.gene36789:CDS 50.0%
GACAACTGGATCTATTGGGC+TGG + chr8.2:79284881-79284900 MS.gene36789:CDS 50.0%
GCAATTGCTAGTAACCCTGC+CGG - chr8.2:79284219-79284238 None:intergenic 50.0%
GCAGCTGAAGTAGGACCTAT+TGG + chr8.2:79284644-79284663 MS.gene36789:CDS 50.0%
GCCAAACCACCACCAATAAG+AGG - chr8.2:79284908-79284927 None:intergenic 50.0%
GCTGAAGTAGGACCTATTGG+AGG + chr8.2:79284647-79284666 MS.gene36789:CDS 50.0%
GGAAACTCCAATCCACAGTG+TGG + chr8.2:79284622-79284641 MS.gene36789:intron 50.0%
GGTTTGGCTGGGCTTATCTA+CGG + chr8.2:79284920-79284939 MS.gene36789:CDS 50.0%
GTGCCTATTGCCCCTTTCTT+TGG - chr8.2:79284737-79284756 None:intergenic 50.0%
TCCACCAAGAGCCAATCCAA+AGG - chr8.2:79284322-79284341 None:intergenic 50.0%
TGGACCTGCAGCCAATATGT+TGG - chr8.2:79284795-79284814 None:intergenic 50.0%
TTCATTGACCCGCCAGAGAA+TGG - chr8.2:79284815-79284834 None:intergenic 50.0%
TTTGGGCCTGCAGTTGTTAG+TGG + chr8.2:79284848-79284867 MS.gene36789:CDS 50.0%
! GTTGGTTCAGCCATAGCCTA+TGG + chr8.2:79283665-79283684 MS.gene36789:CDS 50.0%
! TATTGGGCTGGGCCTCTTAT+TGG + chr8.2:79284893-79284912 MS.gene36789:CDS 50.0%
!! ACCTTTGGATTGGCTCTTGG+TGG + chr8.2:79284318-79284337 MS.gene36789:CDS 50.0%
!! CTTATTGGTGGTGGTTTGGC+TGG + chr8.2:79284908-79284927 MS.gene36789:CDS 50.0%
!! GCCTCTTATTGGTGGTGGTT+TGG + chr8.2:79284904-79284923 MS.gene36789:CDS 50.0%
!! GTCACCTTTGGATTGGCTCT+TGG + chr8.2:79284315-79284334 MS.gene36789:CDS 50.0%
ATGCAGCTCTTGATCCGGCA+GGG + chr8.2:79284202-79284221 MS.gene36789:CDS 55.0%
CACAGTGTGGCAGCTGAAGT+AGG + chr8.2:79284635-79284654 MS.gene36789:CDS 55.0%
CAGGCCCAAAAGATCTTGCC+GGG - chr8.2:79284838-79284857 None:intergenic 55.0%
CCAAGCCTCCAGTGACAAAC+TGG - chr8.2:79284419-79284438 None:intergenic 55.0%
CCAGTTTGTCACTGGAGGCT+TGG + chr8.2:79284416-79284435 MS.gene36789:CDS 55.0%
CCCTGCTGTCACCTTTGGAT+TGG + chr8.2:79284308-79284327 MS.gene36789:CDS 55.0%
CTACTTCAGCTGCCACACTG+TGG - chr8.2:79284637-79284656 None:intergenic 55.0%
CTAGTAGCAATGGGGTGGCA+GGG - chr8.2:79283743-79283762 None:intergenic 55.0%
GCAGGCCCAAAAGATCTTGC+CGG - chr8.2:79284839-79284858 None:intergenic 55.0%
GCCAATCCAAAGGTGACAGC+AGG - chr8.2:79284312-79284331 None:intergenic 55.0%
GTCAACCCTGCTGTCACCTT+TGG + chr8.2:79284303-79284322 MS.gene36789:CDS 55.0%
TCAGCTGCCACACTGTGGAT+TGG - chr8.2:79284632-79284651 None:intergenic 55.0%
TCTAGTAGCAATGGGGTGGC+AGG - chr8.2:79283744-79283763 None:intergenic 55.0%
TTGGCTGCAGGTCCATTCTC+TGG + chr8.2:79284800-79284819 MS.gene36789:CDS 55.0%
! GGTGCCAACATATTGGCTGC+AGG + chr8.2:79284788-79284807 MS.gene36789:CDS 55.0%
CTGCAGGTCCATTCTCTGGC+GGG + chr8.2:79284804-79284823 MS.gene36789:CDS 60.0%
GATGCAGCTCTTGATCCGGC+AGG + chr8.2:79284201-79284220 MS.gene36789:CDS 60.0%
GCTGCAGGTCCATTCTCTGG+CGG + chr8.2:79284803-79284822 MS.gene36789:CDS 60.0%
GCTGGGCCTCTTATTGGTGG+TGG + chr8.2:79284899-79284918 MS.gene36789:CDS 60.0%
! CTCTGGCGGGTCAATGAACC+CGG + chr8.2:79284817-79284836 MS.gene36789:CDS 60.0%
! TGGGCTGGGCCTCTTATTGG+TGG + chr8.2:79284896-79284915 MS.gene36789:CDS 60.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 79283560 79284991 79283560 ID=MS.gene36789
chr8.2 mRNA 79283560 79284991 79283560 ID=MS.gene36789.t1;Parent=MS.gene36789
chr8.2 exon 79283560 79283686 79283560 ID=MS.gene36789.t1.exon1;Parent=MS.gene36789.t1
chr8.2 CDS 79283560 79283686 79283560 ID=cds.MS.gene36789.t1;Parent=MS.gene36789.t1
chr8.2 exon 79284187 79284437 79284187 ID=MS.gene36789.t1.exon2;Parent=MS.gene36789.t1
chr8.2 CDS 79284187 79284437 79284187 ID=cds.MS.gene36789.t1;Parent=MS.gene36789.t1
chr8.2 exon 79284623 79284991 79284623 ID=MS.gene36789.t1.exon3;Parent=MS.gene36789.t1
chr8.2 CDS 79284623 79284991 79284623 ID=cds.MS.gene36789.t1;Parent=MS.gene36789.t1
Gene Sequence

>MS.gene36789

ATGGCTGGCATAGCATTTGGAAGATTTGATGATTCTTTCAGTTTTGGCTCAATTAAGGCCTATATTGCTGAGTTCATCTCAACTTTGCTCTTTGTTTTTGCTGGTGTTGGTTCAGCCATAGCCTATGGTTAGTTTTCTATGCTTTACAAGAGAAATGAACATAATATCAGAATGTCTTAACCCTGCCACCCCATTGCTACTAGAATTATAGTAAAGTTTTCACCATTAAAGTTGAATTTTTGATGAAAATTAGATCACAAAAGATAAAATTTATGTCAAAGTTCGTTGCTAAACGTTAGACGTCAAAATTGGAGATTTATTTAATTTTTTCTGTGAGTAATTCAACAAAAATTTAGAGACATAAAAAGACAAAATACATCTTTATTTCCGTCTAATTGTTAAAGACGCCAATTTTGGCGAGCAATTTTATTTTTTCCGTTTCTAATATTAGTCAGTATTTTAACTTCATTTTTTTAAGTTGGAAAGGGCATTTTACAACCGTTTGTCTCTTGAGGTTACAAGTTCAAATTACTCTTAATATTGAAAAGAAGAAAAAAAAATGAAAATAAGAGTATTTAAATTTCTTATTGAATAACAAAGATTATTGTTCTTTGACTTAATTTGCAGGTAAGTTGACATCAGATGCAGCTCTTGATCCGGCAGGGTTACTAGCAATTGCTGTTTGCCATGGTTTTGCACTTTTTGTTGCTGTTGCAGTTGGTGCAAACATTTCTGGTGGTCATGTCAACCCTGCTGTCACCTTTGGATTGGCTCTTGGTGGACAGATTACAATCATCACTGGTATCTTCTACTGGATTGCTCAACTTCTTGGCTCCATTGTTGCATGTTTTCTTCTCCAGTTTGTCACTGGAGGCTTGGTAAGTTTAAATTCCACTTATCTAGCTACATAGCTTAGTCACTTGTTAAATATACATGAGTTCAATGTGCTAAAATTAATACTATATACAAAGTCCAAGGACAAAAAGAATATCATAATGTTGAGTTCATTATAGTTAAGATTATAATATAATGTGCTGAAATTAATATTGTGATTTGTTGGCAGGAAACTCCAATCCACAGTGTGGCAGCTGAAGTAGGACCTATTGGAGGAGTTGTTACTGAAATCATCATAACATTTGGTTTGGTATACACAGTTTATGCCACAGCAGCTGATCCAAAGAAAGGGGCAATAGGCACAGTTGCACCCATTGCCATTGGTTTCATTGTTGGTGCCAACATATTGGCTGCAGGTCCATTCTCTGGCGGGTCAATGAACCCGGCAAGATCTTTTGGGCCTGCAGTTGTTAGTGGAAATTTCCACGACAACTGGATCTATTGGGCTGGGCCTCTTATTGGTGGTGGTTTGGCTGGGCTTATCTACGGCAATGTGTTCATGCGCACTGAACATGCACCTCTTTCTAGTGACTTTTGA
Protein sequence

>MS.gene36789.t1

MAGIAFGRFDDSFSFGSIKAYIAEFISTLLFVFAGVGSAIAYGKLTSDAALDPAGLLAIAVCHGFALFVAVAVGANISGGHVNPAVTFGLALGGQITIITGIFYWIAQLLGSIVACFLLQFVTGGLETPIHSVAAEVGPIGGVVTEIIITFGLVYTVYATAADPKKGAIGTVAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGNFHDNWIYWAGPLIGGGLAGLIYGNVFMRTEHAPLSSDF