AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene36973

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene36973.t1 MTR_8g013680 97.581 248 6 0 1 248 1 248 2.85e-171 472
MS.gene36973.t1 MTR_2g101370 84.553 246 38 0 3 248 4 249 6.20e-147 410
MS.gene36973.t1 MTR_5g012810 77.016 248 56 1 1 248 1 247 9.72e-121 344
MS.gene36973.t1 MTR_4g063090 62.832 226 81 1 24 246 26 251 1.50e-93 275
MS.gene36973.t1 MTR_1g006490 57.661 248 99 3 1 247 1 243 2.37e-91 270
MS.gene36973.t1 MTR_1g115405 57.085 247 104 2 4 248 6 252 3.68e-89 264
MS.gene36973.t1 MTR_1g006590 55.645 248 104 3 1 247 1 243 1.54e-86 257
MS.gene36973.t1 MTR_7g103030 60.643 249 96 2 1 248 3 250 1.89e-85 254
MS.gene36973.t1 MTR_7g023350 60.684 234 90 2 17 248 19 252 4.06e-85 254
MS.gene36973.t1 MTR_1g077540 50.000 250 118 1 5 247 7 256 2.89e-83 249
MS.gene36973.t1 MTR_6g069040 53.441 247 111 1 5 247 7 253 2.22e-78 237
MS.gene36973.t1 MTR_2g060360 45.041 242 132 1 1 242 1 241 9.93e-74 225
MS.gene36973.t1 MTR_7g101190 40.167 239 126 6 19 242 39 275 3.00e-39 137
MS.gene36973.t1 MTR_2g094270 38.431 255 121 8 9 238 30 273 4.95e-39 137
MS.gene36973.t1 MTR_3g118010 41.026 234 117 7 19 238 37 263 2.55e-38 135
MS.gene36973.t1 MTR_4g059390 39.076 238 122 7 19 238 39 271 2.78e-35 127
MS.gene36973.t1 MTR_5g063930 36.910 233 133 6 9 238 27 248 5.96e-35 125
MS.gene36973.t1 MTR_5g010150 37.500 240 132 7 11 238 46 279 4.53e-33 121
MS.gene36973.t1 MTR_5g082070 37.768 233 128 6 12 232 50 277 1.76e-31 117
MS.gene36973.t1 MTR_8g098375 35.833 240 136 7 11 238 46 279 4.93e-31 116
MS.gene36973.t1 MTR_2g094270 37.946 224 107 6 9 210 30 243 7.55e-31 115
MS.gene36973.t1 MTR_3g070210 36.820 239 133 8 12 238 50 282 1.61e-30 115
MS.gene36973.t1 MTR_2g017590 33.624 229 143 5 18 246 35 254 2.68e-29 111
MS.gene36973.t1 MTR_2g017620 34.498 229 139 5 10 238 17 234 6.07e-29 110
MS.gene36973.t1 MTR_4g415300 36.250 240 132 8 12 238 51 282 7.04e-29 110
MS.gene36973.t1 MTR_2g017620 34.498 229 139 5 10 238 31 248 9.08e-29 110
MS.gene36973.t1 MTR_4g006730 36.715 207 113 5 23 224 79 272 2.65e-28 109
MS.gene36973.t1 MTR_1g097840 35.398 226 126 6 23 242 78 289 3.79e-28 108
MS.gene36973.t1 MTR_3g008920 36.864 236 125 8 18 246 25 243 4.30e-28 108
MS.gene36973.t1 MTR_2g104940 36.715 207 113 4 23 224 84 277 1.58e-27 107
MS.gene36973.t1 MTR_2g017660 33.333 231 145 4 18 248 38 259 1.91e-27 106
MS.gene36973.t1 MTR_8g087710 32.751 229 145 4 18 246 38 257 5.09e-27 105
MS.gene36973.t1 MTR_1g095070 38.144 194 85 6 67 238 25 205 5.38e-27 104
MS.gene36973.t1 MTR_5g079570 36.087 230 129 8 18 243 39 254 2.11e-26 103
MS.gene36973.t1 MTR_2g017610 31.878 229 147 5 18 246 37 256 2.69e-26 103
MS.gene36973.t1 MTR_4g006730 35.859 198 109 5 32 224 1 185 7.46e-26 101
MS.gene36973.t1 MTR_2g017570 31.441 229 148 5 18 246 37 256 7.79e-26 102
MS.gene36973.t1 MTR_4g006630 35.859 198 109 5 32 224 1 185 8.73e-26 100
MS.gene36973.t1 MTR_8g087720 31.933 238 151 4 7 241 23 252 1.43e-25 101
MS.gene36973.t1 MTR_7g010650 34.483 232 137 6 13 241 31 250 1.86e-25 101
MS.gene36973.t1 MTR_1g070385 33.778 225 131 7 22 241 65 276 4.90e-25 103
MS.gene36973.t1 MTR_4g084880 32.314 229 148 3 18 246 34 255 5.17e-25 100
MS.gene36973.t1 MTR_2g017620 37.423 163 98 2 76 238 9 167 7.34e-23 92.4
MS.gene36973.t1 MTR_3g070210 35.468 203 119 5 14 207 50 249 2.27e-22 93.2
MS.gene36973.t1 MTR_1g095070 38.690 168 71 5 67 215 25 179 1.69e-20 86.3
MS.gene36973.t1 MTR_4g059390 37.647 170 91 4 19 177 39 204 1.79e-20 86.7
MS.gene36973.t1 MTR_5g010150 35.465 172 101 4 11 177 46 212 3.64e-18 80.5
MS.gene36973.t1 MTR_8g098375 33.714 175 106 4 11 180 46 215 1.68e-17 79.3
MS.gene36973.t1 MTR_4g415300 34.409 186 107 6 12 191 51 227 8.27e-16 74.3
MS.gene36973.t1 MTR_3g070210 34.118 170 102 5 12 176 50 214 8.69e-16 74.3
MS.gene36973.t1 MTR_4g006730 35.465 172 93 5 23 189 79 237 6.15e-15 72.8
MS.gene36973.t1 MTR_8g468730 35.922 103 47 2 141 243 5 88 1.40e-13 65.5
MS.gene36973.t1 MTR_1g097840 32.948 173 96 6 23 189 78 236 1.19e-11 63.5
MS.gene36973.t1 MTR_4g075570 28.516 256 146 8 7 235 33 278 1.57e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene36973.t1 AT3G16240 80.800 250 46 2 1 248 1 250 2.21e-141 396
MS.gene36973.t1 AT5G47450 71.901 242 68 0 1 242 1 242 1.98e-121 346
MS.gene36973.t1 AT4G17340 74.486 243 61 1 1 243 1 242 5.06e-114 327
MS.gene36973.t1 AT2G36830 63.008 246 90 1 4 248 6 251 3.89e-102 297
MS.gene36973.t1 AT3G26520 62.295 244 90 2 7 248 10 253 4.21e-99 290
MS.gene36973.t1 AT4G01470 58.704 247 100 2 4 248 6 252 3.84e-92 272
MS.gene36973.t1 AT2G25810 55.061 247 107 2 1 247 1 243 6.57e-82 246
MS.gene36973.t1 AT1G73190 53.125 256 106 2 6 247 11 266 1.81e-80 243
MS.gene36973.t1 AT1G17810 51.765 255 110 2 6 247 11 265 1.25e-75 230
MS.gene36973.t1 AT3G47440 45.726 234 126 1 8 241 12 244 1.36e-68 212
MS.gene36973.t1 AT4G35100 40.909 242 120 8 11 238 32 264 2.19e-39 138
MS.gene36973.t1 AT4G35100 40.909 242 120 8 11 238 32 264 2.19e-39 138
MS.gene36973.t1 AT2G37170 38.340 253 138 8 10 246 28 278 1.05e-36 131
MS.gene36973.t1 AT2G37170 38.340 253 138 8 10 246 71 321 1.42e-36 132
MS.gene36973.t1 AT3G54820 39.407 236 124 8 19 238 38 270 6.28e-36 129
MS.gene36973.t1 AT5G60660 38.723 235 127 7 19 238 39 271 6.46e-36 129
MS.gene36973.t1 AT3G53420 38.934 244 131 7 19 246 39 280 2.99e-35 127
MS.gene36973.t1 AT3G53420 38.934 244 131 7 19 246 39 280 2.99e-35 127
MS.gene36973.t1 AT2G37180 38.618 246 129 8 19 246 37 278 6.26e-35 126
MS.gene36973.t1 AT2G16850 40.084 237 115 9 19 238 36 262 9.46e-35 125
MS.gene36973.t1 AT2G39010 38.819 237 124 7 19 238 38 270 1.29e-34 125
MS.gene36973.t1 AT4G00430 37.603 242 128 8 11 238 47 279 8.90e-32 118
MS.gene36973.t1 AT1G52180 64.516 93 33 0 119 211 29 121 2.59e-31 112
MS.gene36973.t1 AT1G01620 37.449 243 127 8 11 238 46 278 3.93e-31 116
MS.gene36973.t1 AT4G23400 37.657 239 132 8 11 238 47 279 6.71e-31 116
MS.gene36973.t1 AT3G61430 37.131 237 125 7 11 232 46 273 5.00e-30 114
MS.gene36973.t1 AT3G61430 37.131 237 125 7 11 232 46 273 5.00e-30 114
MS.gene36973.t1 AT2G45960 36.864 236 125 7 12 232 47 273 4.57e-29 111
MS.gene36973.t1 AT1G01620 38.693 199 101 6 55 238 14 206 3.79e-27 104
MS.gene36973.t1 AT4G10380 34.426 244 136 7 3 235 56 286 7.44e-27 105
MS.gene36973.t1 AT1G80760 34.978 223 127 5 23 240 84 293 7.57e-27 105
MS.gene36973.t1 AT4G19030 33.333 243 144 7 12 246 48 280 1.68e-26 104
MS.gene36973.t1 AT5G37820 32.900 231 140 4 19 246 43 261 4.28e-26 103
MS.gene36973.t1 AT5G37820 32.900 231 140 4 19 246 79 297 6.16e-26 103
MS.gene36973.t1 AT1G31885 33.333 240 136 6 18 246 42 268 7.91e-26 103
MS.gene36973.t1 AT5G37810 32.468 231 141 4 19 246 43 261 2.61e-25 101
MS.gene36973.t1 AT4G18910 33.745 243 143 7 12 246 45 277 7.33e-25 100
MS.gene36973.t1 AT3G06100 31.064 235 155 4 6 240 33 260 2.81e-24 98.2
MS.gene36973.t1 AT3G06100 32.420 219 141 4 22 240 1 212 3.34e-23 94.4
MS.gene36973.t1 AT1G31885 33.480 227 127 6 31 246 1 214 6.85e-23 94.4
MS.gene36973.t1 AT2G45960 36.364 209 113 6 19 215 52 252 1.48e-21 90.9
MS.gene36973.t1 AT2G45960 37.019 208 110 6 12 207 47 245 1.68e-21 91.3
MS.gene36973.t1 AT2G39010 36.905 168 93 4 19 176 38 202 7.67e-19 82.8
MS.gene36973.t1 AT3G06100 34.058 138 89 2 103 240 44 179 3.37e-16 74.7
MS.gene36973.t1 AT4G00430 34.831 178 101 5 11 181 47 216 5.29e-16 74.7
MS.gene36973.t1 AT2G34390 31.532 222 137 6 18 232 47 260 7.77e-15 72.8
MS.gene36973.t1 AT2G34390 32.110 218 133 6 22 232 9 218 1.75e-14 71.2
MS.gene36973.t1 AT4G19030 31.351 185 111 6 12 188 48 224 6.42e-12 63.5

Find 77 sgRNAs with CRISPR-Local

Find 100 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTGGATTGCTCAGCTTCT+TGG 0.181745 8.4:+77278733 MS.gene36973:CDS
GCAGTTGGTGCAAACATTTC+TGG 0.199557 8.4:+77278637 MS.gene36973:CDS
GTGCCTATTGCCCCTTTCTT+TGG 0.207140 8.4:-77279004 None:intergenic
TTTGATGATTCTTTCAGTTT+TGG 0.226049 8.4:+77277970 MS.gene36973:CDS
CTTATCGGTGGTGGTTTGGC+TGG 0.262849 8.4:+77279178 MS.gene36973:CDS
ATGAACCCAGCAAGATCTTT+TGG 0.267380 8.4:+77279100 MS.gene36973:CDS
TCCACGACAACTGGATCTAT+TGG 0.277829 8.4:+77279146 MS.gene36973:CDS
GTCAACCCTGCTGTCACCTT+TGG 0.291721 8.4:+77278667 MS.gene36973:CDS
GGTTTGGCTGGGCTTATCTA+TGG 0.292902 8.4:+77279190 MS.gene36973:CDS
TATTGGGCTGGGCCTCTTAT+CGG 0.322796 8.4:+77279163 MS.gene36973:CDS
GTCACCTTTGGATTGGCTCT+TGG 0.343040 8.4:+77278679 MS.gene36973:CDS
ACTGAAATCATCATAACATT+TGG 0.367367 8.4:+77278947 MS.gene36973:CDS
GCCTCTTATCGGTGGTGGTT+TGG 0.373518 8.4:+77279174 MS.gene36973:CDS
ATTGCCATTGGTTTCATTGT+TGG 0.375835 8.4:+77279037 MS.gene36973:CDS
GCCAAACCACCACCGATAAG+AGG 0.379268 8.4:-77279175 None:intergenic
GTGGAAATTTCCACGACAAC+TGG 0.386505 8.4:+77279137 MS.gene36973:CDS
TGAGATGAACTCAGCAATAT+AGG 0.386935 8.4:-77278004 None:intergenic
TTTGGGCCTGCAGTTGTTAG+TGG 0.387568 8.4:+77279118 MS.gene36973:CDS
TTCATTGACCCGCCAGAGAA+TGG 0.393300 8.4:-77279082 None:intergenic
CCACGACAACTGGATCTATT+GGG 0.398062 8.4:+77279147 MS.gene36973:CDS
AAGATGGCTGGCATAGCATT+TGG 0.399858 8.4:+77277943 None:intergenic
CCAAGCCTCCAGTGACAAAC+TGG 0.399981 8.4:-77278780 None:intergenic
AATCATCATAACATTTGGTT+TGG 0.400689 8.4:+77278952 MS.gene36973:CDS
GCAGCTGAAGTAGGACCTAT+TGG 0.405581 8.4:+77278914 MS.gene36973:CDS
TTTCTTCTCCAGTTTGTCAC+TGG 0.408023 8.4:+77278772 MS.gene36973:CDS
CCCTGCTGTCACCTTTGGAT+TGG 0.409091 8.4:+77278672 MS.gene36973:CDS
ACCTTTGGATTGGCTCTTGG+TGG 0.411041 8.4:+77278682 MS.gene36973:CDS
GATCCAAAGAAAGGGGCAAT+AGG 0.421974 8.4:+77279001 MS.gene36973:CDS
CCAGTTTGTCACTGGAGGCT+TGG 0.423778 8.4:+77278780 MS.gene36973:CDS
GCAGGCCCAAAAGATCTTGC+TGG 0.429357 8.4:-77279106 None:intergenic
CATTGTTGGTGCCAACATAT+TGG 0.446875 8.4:+77279051 MS.gene36973:CDS
TTATCGGTGGTGGTTTGGCT+GGG 0.451028 8.4:+77279179 MS.gene36973:CDS
GCCAATCCAAAGGTGACAGC+AGG 0.452295 8.4:-77278673 None:intergenic
TTGGCTGCAGGCCCATTCTC+TGG 0.453121 8.4:+77279070 MS.gene36973:CDS
TCATCACTGGTATCTTCTAC+TGG 0.458106 8.4:+77278716 MS.gene36973:CDS
GACAACTGGATCTATTGGGC+TGG 0.462914 8.4:+77279151 MS.gene36973:CDS
TCAGTAACAACTCCTCCAAT+AGG 0.466361 8.4:-77278929 None:intergenic
CTAGCAGTTGCTGTTTGCCA+TGG 0.466889 8.4:+77278592 MS.gene36973:CDS
CTTCTCCAGTTTGTCACTGG+AGG 0.467570 8.4:+77278775 MS.gene36973:CDS
CTGCAGGCCCATTCTCTGGC+GGG 0.479733 8.4:+77279074 MS.gene36973:CDS
TCATTGACCCGCCAGAGAAT+GGG 0.485491 8.4:-77279081 None:intergenic
GTTGGTTCAGCCATAGCCTA+TGG 0.499410 8.4:+77278051 MS.gene36973:CDS
ACAGTTGCACCCATTGCCAT+TGG 0.503181 8.4:+77279025 MS.gene36973:CDS
ACAATGAAACCAATGGCAAT+GGG 0.510446 8.4:-77279034 None:intergenic
TCAGCTGCCACACTGTGGAT+TGG 0.510734 8.4:-77278899 None:intergenic
CAGCAGCTGATCCAAAGAAA+GGG 0.511871 8.4:+77278993 MS.gene36973:CDS
TTTCTTTGGATCAGCTGCTG+TGG 0.517451 8.4:-77278990 None:intergenic
GATGCAGCTCTTGATCCAGC+AGG 0.519356 8.4:+77278565 MS.gene36973:CDS
AATCAAAAGTCACTAGAAAG+AGG 0.520771 8.4:-77279241 None:intergenic
GCTGGGCCTCTTATCGGTGG+TGG 0.521426 8.4:+77279169 MS.gene36973:CDS
AACAATGAAACCAATGGCAA+TGG 0.533814 8.4:-77279035 None:intergenic
ACAGCAGCTGATCCAAAGAA+AGG 0.538310 8.4:+77278992 MS.gene36973:CDS
GTAGAAGATACCAGTGATGA+TGG 0.540575 8.4:-77278713 None:intergenic
TAGAAACTTCTGAAGATGGC+TGG 0.543796 8.4:+77277931 None:intergenic
GCTGCAGGCCCATTCTCTGG+CGG 0.549066 8.4:+77279073 MS.gene36973:CDS
CAGGCCCAAAAGATCTTGCT+GGG 0.550251 8.4:-77279105 None:intergenic
GCAACTGCTAGTAACCCTGC+TGG 0.551593 8.4:-77278580 None:intergenic
GGACAGATCACCATCATCAC+TGG 0.553513 8.4:+77278703 MS.gene36973:CDS
AGAAAACTAACCATAGGCTA+TGG 0.555965 8.4:-77278061 None:intergenic
GGTGCCAACATATTGGCTGC+AGG 0.556816 8.4:+77279058 MS.gene36973:CDS
TGGCTGGCATAGCATTTGGA+AGG 0.562910 8.4:+77277947 MS.gene36973:CDS
CCCAATAGATCCAGTTGTCG+TGG 0.571271 8.4:-77279147 None:intergenic
ACAACTGGATCTATTGGGCT+GGG 0.575806 8.4:+77279152 MS.gene36973:CDS
AAATTTCCACTAACAACTGC+AGG 0.577339 8.4:-77279124 None:intergenic
GAGAAGAAAACATGCAACAA+TGG 0.578089 8.4:-77278758 None:intergenic
CACAGTGTGGCAGCTGAAGT+AGG 0.582308 8.4:+77278905 MS.gene36973:CDS
TGGGCTGGGCCTCTTATCGG+TGG 0.584633 8.4:+77279166 MS.gene36973:CDS
TGGGCCTGCAGCCAATATGT+TGG 0.594871 8.4:-77279062 None:intergenic
GCTGAAGTAGGACCTATTGG+AGG 0.620559 8.4:+77278917 MS.gene36973:CDS
GGCACCAACAATGAAACCAA+TGG 0.627058 8.4:-77279041 None:intergenic
CCAATCCAAAGGTGACAGCA+GGG 0.629836 8.4:-77278672 None:intergenic
AGCAGCTGATCCAAAGAAAG+GGG 0.630978 8.4:+77278994 MS.gene36973:CDS
TCCACCAAGAGCCAATCCAA+AGG 0.646031 8.4:-77278683 None:intergenic
ATGCAGCTCTTGATCCAGCA+GGG 0.652800 8.4:+77278566 MS.gene36973:CDS
GTTGGTGCAAACATTTCTGG+TGG 0.676373 8.4:+77278640 MS.gene36973:CDS
CTACTTCAGCTGCCACACTG+TGG 0.679427 8.4:-77278904 None:intergenic
GGAAACTCCAATCCACAGTG+TGG 0.749398 8.4:+77278892 MS.gene36973:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTATAATTCTAGTAGTAAT+GGG - chr8.4:77278128-77278147 None:intergenic 20.0%
!! TACTATAATTCTAGTAGTAA+TGG - chr8.4:77278129-77278148 None:intergenic 20.0%
!!! AGTAACTTCATTTTATAAGT+TGG + chr8.4:77278386-77278405 MS.gene36973:intron 20.0%
!!! TTCATTTTATAAGTTGGAAA+GGG + chr8.4:77278392-77278411 MS.gene36973:intron 20.0%
! AATCATCATAACATTTGGTT+TGG + chr8.4:77278952-77278971 MS.gene36973:CDS 25.0%
! ACTGAAATCATCATAACATT+TGG + chr8.4:77278947-77278966 MS.gene36973:CDS 25.0%
! CATCAATAATTCAACTTCAA+TGG - chr8.4:77278161-77278180 None:intergenic 25.0%
! CTATAATTCTAGTAGTAATG+GGG - chr8.4:77278127-77278146 None:intergenic 25.0%
! GAAGTTACTAATATCAGAAA+CGG - chr8.4:77278375-77278394 None:intergenic 25.0%
!! TTGTTAAAGACGTTCAATTT+TGG + chr8.4:77278331-77278350 MS.gene36973:intron 25.0%
!!! CTTCATTTTATAAGTTGGAA+AGG + chr8.4:77278391-77278410 MS.gene36973:intron 25.0%
!!! TAATATTGTGATTTGTTGAC+AGG + chr8.4:77278871-77278890 MS.gene36973:intron 25.0%
!!! TTTGATGATTCTTTCAGTTT+TGG + chr8.4:77277970-77277989 MS.gene36973:CDS 25.0%
AAGAAGAGAAAACTAACCAT+AGG - chr8.4:77278070-77278089 None:intergenic 30.0%
GAACGTCTTTAACAATTAGA+CGG - chr8.4:77278326-77278345 None:intergenic 30.0%
TAAACGTTAGACGTCAAAAT+TGG + chr8.4:77278225-77278244 MS.gene36973:intron 30.0%
TTGTAACCTCAAGAGATAAA+CGG - chr8.4:77278428-77278447 None:intergenic 30.0%
!! TGTTGTTTGACTTAATTTGC+AGG + chr8.4:77278529-77278548 MS.gene36973:intron 30.0%
!!! TTTCAGTTTTGGCTCAATTA+AGG + chr8.4:77277981-77278000 MS.gene36973:CDS 30.0%
AAATTTCCACTAACAACTGC+AGG - chr8.4:77279127-77279146 None:intergenic 35.0%
AACAATGAAACCAATGGCAA+TGG - chr8.4:77279038-77279057 None:intergenic 35.0%
ACAATGAAACCAATGGCAAT+GGG - chr8.4:77279037-77279056 None:intergenic 35.0%
AGAAAACTAACCATAGGCTA+TGG - chr8.4:77278064-77278083 None:intergenic 35.0%
GAGAAGAAAACATGCAACAA+TGG - chr8.4:77278761-77278780 None:intergenic 35.0%
TGAGATGAACTCAGCAATAT+AGG - chr8.4:77278007-77278026 None:intergenic 35.0%
TTACAACCGTTTATCTCTTG+AGG + chr8.4:77278419-77278438 MS.gene36973:intron 35.0%
! CAACAAAAAGTGCAAAACCA+TGG - chr8.4:77278612-77278631 None:intergenic 35.0%
! TAATTCTAGTAGTAATGGGG+TGG - chr8.4:77278124-77278143 None:intergenic 35.0%
!! ATTGCCATTGGTTTCATTGT+TGG + chr8.4:77279037-77279056 MS.gene36973:CDS 35.0%
!!! ACTTTGCTCTTTGTTTTTGC+TGG + chr8.4:77278027-77278046 MS.gene36973:CDS 35.0%
GTAGAAGATACCAGTGATGA+TGG - chr8.4:77278716-77278735 None:intergenic 40.0%
TCAGTAACAACTCCTCCAAT+AGG - chr8.4:77278932-77278951 None:intergenic 40.0%
TCATCACTGGTATCTTCTAC+TGG + chr8.4:77278716-77278735 MS.gene36973:CDS 40.0%
TTTCTTCTCCAGTTTGTCAC+TGG + chr8.4:77278772-77278791 MS.gene36973:CDS 40.0%
! ATGAACCCAGCAAGATCTTT+TGG + chr8.4:77279100-77279119 MS.gene36973:CDS 40.0%
! TGAACCCAGCAAGATCTTTT+GGG + chr8.4:77279101-77279120 MS.gene36973:CDS 40.0%
!! CATTGTTGGTGCCAACATAT+TGG + chr8.4:77279051-77279070 MS.gene36973:CDS 40.0%
!! CTTTTTGTTGCTGTTGCAGT+TGG + chr8.4:77278622-77278641 MS.gene36973:CDS 40.0%
!!! CTCTTTGTTTTTGCTGGTGT+TGG + chr8.4:77278033-77278052 MS.gene36973:CDS 40.0%
ACAACTGGATCTATTGGGCT+GGG + chr8.4:77279152-77279171 MS.gene36973:CDS 45.0%
ACAGCAGCTGATCCAAAGAA+AGG + chr8.4:77278992-77279011 MS.gene36973:CDS 45.0%
AGCAGCTGATCCAAAGAAAG+GGG + chr8.4:77278994-77279013 MS.gene36973:CDS 45.0%
CAGCAGCTGATCCAAAGAAA+GGG + chr8.4:77278993-77279012 MS.gene36973:CDS 45.0%
CCACGACAACTGGATCTATT+GGG + chr8.4:77279147-77279166 MS.gene36973:CDS 45.0%
GATCCAAAGAAAGGGGCAAT+AGG + chr8.4:77279001-77279020 MS.gene36973:CDS 45.0%
GGCACCAACAATGAAACCAA+TGG - chr8.4:77279044-77279063 None:intergenic 45.0%
GTGGAAATTTCCACGACAAC+TGG + chr8.4:77279137-77279156 MS.gene36973:CDS 45.0%
TACTGGATTGCTCAGCTTCT+TGG + chr8.4:77278733-77278752 MS.gene36973:CDS 45.0%
TCCACGACAACTGGATCTAT+TGG + chr8.4:77279146-77279165 MS.gene36973:CDS 45.0%
TTTCTTTGGATCAGCTGCTG+TGG - chr8.4:77278993-77279012 None:intergenic 45.0%
! GCAGTTGGTGCAAACATTTC+TGG + chr8.4:77278637-77278656 MS.gene36973:CDS 45.0%
! GTTGGTGCAAACATTTCTGG+TGG + chr8.4:77278640-77278659 MS.gene36973:CDS 45.0%
ACAGTTGCACCCATTGCCAT+TGG + chr8.4:77279025-77279044 MS.gene36973:CDS 50.0%
ATGCAGCTCTTGATCCAGCA+GGG + chr8.4:77278566-77278585 MS.gene36973:CDS 50.0%
CAGGCCCAAAAGATCTTGCT+GGG - chr8.4:77279108-77279127 None:intergenic 50.0%
CCAATCCAAAGGTGACAGCA+GGG - chr8.4:77278675-77278694 None:intergenic 50.0%
CCCAATAGATCCAGTTGTCG+TGG - chr8.4:77279150-77279169 None:intergenic 50.0%
CTTCTCCAGTTTGTCACTGG+AGG + chr8.4:77278775-77278794 MS.gene36973:CDS 50.0%
GACAACTGGATCTATTGGGC+TGG + chr8.4:77279151-77279170 MS.gene36973:CDS 50.0%
GCAGCTGAAGTAGGACCTAT+TGG + chr8.4:77278914-77278933 MS.gene36973:CDS 50.0%
GCTGAAGTAGGACCTATTGG+AGG + chr8.4:77278917-77278936 MS.gene36973:CDS 50.0%
GGAAACTCCAATCCACAGTG+TGG + chr8.4:77278892-77278911 MS.gene36973:intron 50.0%
GGACAGATCACCATCATCAC+TGG + chr8.4:77278703-77278722 MS.gene36973:CDS 50.0%
GGTTTGGCTGGGCTTATCTA+TGG + chr8.4:77279190-77279209 MS.gene36973:CDS 50.0%
GTGCCTATTGCCCCTTTCTT+TGG - chr8.4:77279007-77279026 None:intergenic 50.0%
TCATTGACCCGCCAGAGAAT+GGG - chr8.4:77279084-77279103 None:intergenic 50.0%
TCCACCAAGAGCCAATCCAA+AGG - chr8.4:77278686-77278705 None:intergenic 50.0%
TGGCTGGCATAGCATTTGGA+AGG + chr8.4:77277947-77277966 MS.gene36973:CDS 50.0%
TTCATTGACCCGCCAGAGAA+TGG - chr8.4:77279085-77279104 None:intergenic 50.0%
TTTGGGCCTGCAGTTGTTAG+TGG + chr8.4:77279118-77279137 MS.gene36973:CDS 50.0%
! CTAGTAGTAATGGGGTGGCA+GGG - chr8.4:77278119-77278138 None:intergenic 50.0%
! GTTGGTTCAGCCATAGCCTA+TGG + chr8.4:77278051-77278070 MS.gene36973:CDS 50.0%
! TATTGGGCTGGGCCTCTTAT+CGG + chr8.4:77279163-77279182 MS.gene36973:CDS 50.0%
! TCTAGTAGTAATGGGGTGGC+AGG - chr8.4:77278120-77278139 None:intergenic 50.0%
! TTATCGGTGGTGGTTTGGCT+GGG + chr8.4:77279179-77279198 MS.gene36973:CDS 50.0%
!! ACCTTTGGATTGGCTCTTGG+TGG + chr8.4:77278682-77278701 MS.gene36973:CDS 50.0%
!! CTAGCAGTTGCTGTTTGCCA+TGG + chr8.4:77278592-77278611 MS.gene36973:CDS 50.0%
!! GTCACCTTTGGATTGGCTCT+TGG + chr8.4:77278679-77278698 MS.gene36973:CDS 50.0%
CACAGTGTGGCAGCTGAAGT+AGG + chr8.4:77278905-77278924 MS.gene36973:CDS 55.0%
CCAAGCCTCCAGTGACAAAC+TGG - chr8.4:77278783-77278802 None:intergenic 55.0%
CCAGTTTGTCACTGGAGGCT+TGG + chr8.4:77278780-77278799 MS.gene36973:CDS 55.0%
CCCTGCTGTCACCTTTGGAT+TGG + chr8.4:77278672-77278691 MS.gene36973:CDS 55.0%
CTACTTCAGCTGCCACACTG+TGG - chr8.4:77278907-77278926 None:intergenic 55.0%
GATGCAGCTCTTGATCCAGC+AGG + chr8.4:77278565-77278584 MS.gene36973:CDS 55.0%
GCAACTGCTAGTAACCCTGC+TGG - chr8.4:77278583-77278602 None:intergenic 55.0%
GCAGGCCCAAAAGATCTTGC+TGG - chr8.4:77279109-77279128 None:intergenic 55.0%
GCCAAACCACCACCGATAAG+AGG - chr8.4:77279178-77279197 None:intergenic 55.0%
GCCAATCCAAAGGTGACAGC+AGG - chr8.4:77278676-77278695 None:intergenic 55.0%
GTCAACCCTGCTGTCACCTT+TGG + chr8.4:77278667-77278686 MS.gene36973:CDS 55.0%
TCAGCTGCCACACTGTGGAT+TGG - chr8.4:77278902-77278921 None:intergenic 55.0%
TGGGCCTGCAGCCAATATGT+TGG - chr8.4:77279065-77279084 None:intergenic 55.0%
! AGTAATGGGGTGGCAGGGTT+AGG - chr8.4:77278114-77278133 None:intergenic 55.0%
! CTTATCGGTGGTGGTTTGGC+TGG + chr8.4:77279178-77279197 MS.gene36973:CDS 55.0%
! GCCTCTTATCGGTGGTGGTT+TGG + chr8.4:77279174-77279193 MS.gene36973:CDS 55.0%
! GGTGCCAACATATTGGCTGC+AGG + chr8.4:77279058-77279077 MS.gene36973:CDS 55.0%
TTGGCTGCAGGCCCATTCTC+TGG + chr8.4:77279070-77279089 MS.gene36973:CDS 60.0%
CTGCAGGCCCATTCTCTGGC+GGG + chr8.4:77279074-77279093 MS.gene36973:CDS 65.0%
GCTGCAGGCCCATTCTCTGG+CGG + chr8.4:77279073-77279092 MS.gene36973:CDS 65.0%
GCTGGGCCTCTTATCGGTGG+TGG + chr8.4:77279169-77279188 MS.gene36973:CDS 65.0%
! TGGGCTGGGCCTCTTATCGG+TGG + chr8.4:77279166-77279185 MS.gene36973:CDS 65.0%


Chromosome Type Strat End Strand Name
chr8.4 gene 77277946 77279261 77277946 ID=MS.gene36973
chr8.4 mRNA 77277946 77279261 77277946 ID=MS.gene36973.t1;Parent=MS.gene36973
chr8.4 exon 77277946 77278072 77277946 ID=MS.gene36973.t1.exon1;Parent=MS.gene36973.t1
chr8.4 CDS 77277946 77278072 77277946 ID=cds.MS.gene36973.t1;Parent=MS.gene36973.t1
chr8.4 exon 77278551 77278801 77278551 ID=MS.gene36973.t1.exon2;Parent=MS.gene36973.t1
chr8.4 CDS 77278551 77278801 77278551 ID=cds.MS.gene36973.t1;Parent=MS.gene36973.t1
chr8.4 exon 77278893 77279261 77278893 ID=MS.gene36973.t1.exon3;Parent=MS.gene36973.t1
chr8.4 CDS 77278893 77279261 77278893 ID=cds.MS.gene36973.t1;Parent=MS.gene36973.t1
Gene Sequence

>MS.gene36973

ATGGCTGGCATAGCATTTGGAAGGTTTGATGATTCTTTCAGTTTTGGCTCAATTAAGGCCTATATTGCTGAGTTCATCTCAACTTTGCTCTTTGTTTTTGCTGGTGTTGGTTCAGCCATAGCCTATGGTTAGTTTTCTCTTCTTTACAAGATAAATATACAATGTCCTAACCCTGCCACCCCATTACTACTAGAATTATAGTAAAGTTTTCACCATTGAAGTTGAATTATTGATGAAAATTAGATCAGAAAAGATAAAATTTATGTCAAAGTTCGTTGATAAACGTTAGACGTCAAAATTGGAGATTTATTTAATTTTTTCTGTGAGTAATTCGACAAAAATTTAGAGACATAAAAAGACAAAATACATCTTTATTTCCGTCTAATTGTTAAAGACGTTCAATTTTGGCGAGCAATTTTATTTTTTCCGTTTCTGATATTAGTAACTTCATTTTATAAGTTGGAAAGGGCATTTTACAACCGTTTATCTCTTGAGGTTACAAGTTCAAACTCTTACTATTGAAAAGAAGAAAAAAAAATGAAAATAAGAGTATTTAAATTTCTTATTGAATAACAAAGATTATTGTTGTTTGACTTAATTTGCAGGTAAGTTGACATCAGATGCAGCTCTTGATCCAGCAGGGTTACTAGCAGTTGCTGTTTGCCATGGTTTTGCACTTTTTGTTGCTGTTGCAGTTGGTGCAAACATTTCTGGTGGTCATGTCAACCCTGCTGTCACCTTTGGATTGGCTCTTGGTGGACAGATCACCATCATCACTGGTATCTTCTACTGGATTGCTCAGCTTCTTGGCTCCATTGTTGCATGTTTTCTTCTCCAGTTTGTCACTGGAGGCTTGGTAAGTTCTTATCATAATGTTGAGTTCATTATAGTTAAGAATTAAGATTATAATATAATGTGCTGAAATTAATATTGTGATTTGTTGACAGGAAACTCCAATCCACAGTGTGGCAGCTGAAGTAGGACCTATTGGAGGAGTTGTTACTGAAATCATCATAACATTTGGTTTGGTATACACAGTTTATGCCACAGCAGCTGATCCAAAGAAAGGGGCAATAGGCACAGTTGCACCCATTGCCATTGGTTTCATTGTTGGTGCCAACATATTGGCTGCAGGCCCATTCTCTGGCGGGTCAATGAACCCAGCAAGATCTTTTGGGCCTGCAGTTGTTAGTGGAAATTTCCACGACAACTGGATCTATTGGGCTGGGCCTCTTATCGGTGGTGGTTTGGCTGGGCTTATCTATGGCAACGTGTTCATGCGCACTGAACATGCACCTCTTTCTAGTGACTTTTGA
Protein sequence

>MS.gene36973.t1

MAGIAFGRFDDSFSFGSIKAYIAEFISTLLFVFAGVGSAIAYGKLTSDAALDPAGLLAVAVCHGFALFVAVAVGANISGGHVNPAVTFGLALGGQITIITGIFYWIAQLLGSIVACFLLQFVTGGLETPIHSVAAEVGPIGGVVTEIIITFGLVYTVYATAADPKKGAIGTVAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGNFHDNWIYWAGPLIGGGLAGLIYGNVFMRTEHAPLSSDF