Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38688.t1 | XP_003603091.1 | 88.4 | 353 | 35 | 3 | 1 | 352 | 1 | 348 | 7.00E-170 | 606.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38688.t1 | Q9FGQ7 | 47.2 | 316 | 154 | 5 | 11 | 324 | 17 | 321 | 9.8e-72 | 271.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38688.t1 | G7J6Z8 | 88.4 | 353 | 35 | 3 | 1 | 352 | 1 | 348 | 5.0e-170 | 606.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049328 | MS.gene38688 | 0.815964 | 7.06E-52 | -1.69E-46 |
| MS.gene049397 | MS.gene38688 | 0.801078 | 1.07E-48 | -1.69E-46 |
| MS.gene049418 | MS.gene38688 | 0.868344 | 7.00E-66 | -1.69E-46 |
| MS.gene049622 | MS.gene38688 | 0.821338 | 4.26E-53 | -1.69E-46 |
| MS.gene049660 | MS.gene38688 | 0.858888 | 6.04E-63 | -1.69E-46 |
| MS.gene049697 | MS.gene38688 | 0.803946 | 2.73E-49 | -1.69E-46 |
| MS.gene049989 | MS.gene38688 | 0.876771 | 1.07E-68 | -1.69E-46 |
| MS.gene050297 | MS.gene38688 | 0.863832 | 1.88E-64 | -1.69E-46 |
| MS.gene050310 | MS.gene38688 | 0.860813 | 1.59E-63 | -1.69E-46 |
| MS.gene05054 | MS.gene38688 | 0.851014 | 1.17E-60 | -1.69E-46 |
| MS.gene050648 | MS.gene38688 | 0.811732 | 6.04E-51 | -1.69E-46 |
| MS.gene051067 | MS.gene38688 | 0.832161 | 1.11E-55 | -1.69E-46 |
| MS.gene051094 | MS.gene38688 | 0.826479 | 2.65E-54 | -1.69E-46 |
| MS.gene051263 | MS.gene38688 | 0.869776 | 2.40E-66 | -1.69E-46 |
| MS.gene051478 | MS.gene38688 | 0.840772 | 7.11E-58 | -1.69E-46 |
| MS.gene051629 | MS.gene38688 | 0.830305 | 3.16E-55 | -1.69E-46 |
| MS.gene051648 | MS.gene38688 | 0.839091 | 1.95E-57 | -1.69E-46 |
| MS.gene052150 | MS.gene38688 | 0.822218 | 2.66E-53 | -1.69E-46 |
| MS.gene052151 | MS.gene38688 | 0.821927 | 3.11E-53 | -1.69E-46 |
| MS.gene052367 | MS.gene38688 | 0.833301 | 5.77E-56 | -1.69E-46 |
| MS.gene053416 | MS.gene38688 | 0.820691 | 6.00E-53 | -1.69E-46 |
| MS.gene053417 | MS.gene38688 | 0.822038 | 2.93E-53 | -1.69E-46 |
| MS.gene053929 | MS.gene38688 | 0.814547 | 1.46E-51 | -1.69E-46 |
| MS.gene054614 | MS.gene38688 | 0.80172 | 7.88E-49 | -1.69E-46 |
| MS.gene055957 | MS.gene38688 | 0.83008 | 3.59E-55 | -1.69E-46 |
| MS.gene056041 | MS.gene38688 | 0.814615 | 1.41E-51 | -1.69E-46 |
| MS.gene056042 | MS.gene38688 | 0.801174 | 1.02E-48 | -1.69E-46 |
| MS.gene056169 | MS.gene38688 | 0.822971 | 1.78E-53 | -1.69E-46 |
| MS.gene056228 | MS.gene38688 | 0.840079 | 1.08E-57 | -1.69E-46 |
| MS.gene056335 | MS.gene38688 | 0.804383 | 2.22E-49 | -1.69E-46 |
| MS.gene056520 | MS.gene38688 | 0.804509 | 2.09E-49 | -1.69E-46 |
| MS.gene056526 | MS.gene38688 | 0.824481 | 7.88E-54 | -1.69E-46 |
| MS.gene057004 | MS.gene38688 | 0.81976 | 9.80E-53 | -1.69E-46 |
| MS.gene057082 | MS.gene38688 | 0.805234 | 1.47E-49 | -1.69E-46 |
| MS.gene058196 | MS.gene38688 | 0.861717 | 8.43E-64 | -1.69E-46 |
| MS.gene058197 | MS.gene38688 | 0.889759 | 1.82E-73 | -1.69E-46 |
| MS.gene058198 | MS.gene38688 | 0.884208 | 2.33E-71 | -1.69E-46 |
| MS.gene059300 | MS.gene38688 | 0.867797 | 1.05E-65 | -1.69E-46 |
| MS.gene060473 | MS.gene38688 | 0.848428 | 6.17E-60 | -1.69E-46 |
| MS.gene060565 | MS.gene38688 | 0.860855 | 1.54E-63 | -1.69E-46 |
| MS.gene06057 | MS.gene38688 | 0.874312 | 7.45E-68 | -1.69E-46 |
| MS.gene061260 | MS.gene38688 | 0.826536 | 2.57E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38688.t1 | MTR_3g102310 | 95.184 | 353 | 11 | 3 | 1 | 352 | 1 | 348 | 0.0 | 684 |
| MS.gene38688.t1 | MTR_4g094942 | 53.892 | 334 | 141 | 6 | 23 | 348 | 12 | 340 | 1.18e-111 | 330 |
| MS.gene38688.t1 | MTR_1g107535 | 56.766 | 303 | 119 | 6 | 53 | 348 | 66 | 363 | 1.74e-110 | 327 |
| MS.gene38688.t1 | MTR_5g032550 | 34.641 | 306 | 169 | 8 | 34 | 323 | 38 | 328 | 6.16e-46 | 160 |
| MS.gene38688.t1 | MTR_4g080990 | 36.626 | 243 | 135 | 8 | 88 | 321 | 91 | 323 | 2.92e-43 | 153 |
| MS.gene38688.t1 | MTR_5g032550 | 37.788 | 217 | 125 | 3 | 34 | 246 | 38 | 248 | 5.08e-43 | 150 |
| MS.gene38688.t1 | MTR_5g035360 | 43.137 | 204 | 103 | 3 | 88 | 285 | 76 | 272 | 1.31e-41 | 148 |
| MS.gene38688.t1 | MTR_3g100710 | 44.578 | 166 | 92 | 0 | 88 | 253 | 96 | 261 | 2.83e-40 | 145 |
| MS.gene38688.t1 | MTR_8g063120 | 38.498 | 213 | 118 | 3 | 87 | 293 | 92 | 297 | 1.78e-37 | 138 |
| MS.gene38688.t1 | MTR_8g063120 | 46.053 | 152 | 81 | 1 | 87 | 238 | 92 | 242 | 2.67e-37 | 135 |
| MS.gene38688.t1 | MTR_5g065830 | 32.323 | 297 | 193 | 5 | 60 | 349 | 55 | 350 | 1.04e-35 | 133 |
| MS.gene38688.t1 | MTR_8g068950 | 33.210 | 271 | 166 | 8 | 89 | 351 | 108 | 371 | 1.08e-31 | 123 |
| MS.gene38688.t1 | MTR_5g015670 | 36.364 | 187 | 110 | 4 | 85 | 269 | 99 | 278 | 2.37e-30 | 119 |
| MS.gene38688.t1 | MTR_2g011500 | 33.495 | 206 | 124 | 5 | 91 | 293 | 86 | 281 | 2.93e-28 | 112 |
| MS.gene38688.t1 | MTR_3g103080 | 46.154 | 130 | 65 | 2 | 80 | 205 | 54 | 182 | 2.78e-27 | 109 |
| MS.gene38688.t1 | MTR_3g100710 | 38.562 | 153 | 82 | 2 | 113 | 253 | 80 | 232 | 1.63e-24 | 102 |
| MS.gene38688.t1 | MTR_2g089490 | 31.140 | 228 | 137 | 8 | 66 | 282 | 26 | 244 | 1.22e-22 | 96.7 |
| MS.gene38688.t1 | MTR_2g089490 | 32.447 | 188 | 117 | 5 | 66 | 247 | 26 | 209 | 4.44e-21 | 92.4 |
| MS.gene38688.t1 | MTR_4g095790 | 27.778 | 252 | 156 | 8 | 89 | 335 | 68 | 298 | 2.77e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38688.t1 | AT5G67260 | 47.826 | 345 | 160 | 9 | 11 | 348 | 17 | 348 | 2.99e-92 | 280 |
| MS.gene38688.t1 | AT5G67260 | 47.826 | 345 | 160 | 9 | 11 | 348 | 17 | 348 | 9.52e-92 | 280 |
| MS.gene38688.t1 | AT4G34160 | 52.174 | 276 | 122 | 4 | 10 | 285 | 17 | 282 | 1.35e-91 | 279 |
| MS.gene38688.t1 | AT3G50070 | 46.452 | 310 | 138 | 7 | 8 | 310 | 13 | 301 | 6.15e-84 | 259 |
| MS.gene38688.t1 | AT1G70210 | 40.086 | 232 | 130 | 5 | 58 | 282 | 47 | 276 | 2.32e-46 | 161 |
| MS.gene38688.t1 | AT2G22490 | 38.197 | 233 | 135 | 4 | 87 | 314 | 95 | 323 | 7.56e-44 | 155 |
| MS.gene38688.t1 | AT2G22490 | 38.197 | 233 | 136 | 3 | 87 | 314 | 95 | 324 | 7.60e-43 | 152 |
| MS.gene38688.t1 | AT5G65420 | 41.317 | 167 | 92 | 2 | 85 | 248 | 74 | 237 | 6.06e-34 | 126 |
| MS.gene38688.t1 | AT5G65420 | 34.322 | 236 | 135 | 5 | 85 | 317 | 74 | 292 | 7.44e-34 | 127 |
| MS.gene38688.t1 | AT5G65420 | 40.523 | 153 | 90 | 1 | 85 | 236 | 74 | 226 | 4.09e-33 | 123 |
| MS.gene38688.t1 | AT5G65420 | 32.927 | 246 | 135 | 6 | 85 | 317 | 74 | 302 | 1.03e-31 | 122 |
| MS.gene38688.t1 | AT5G10440 | 36.735 | 196 | 114 | 5 | 60 | 248 | 36 | 228 | 3.66e-28 | 112 |
| MS.gene38688.t1 | AT5G10440 | 35.294 | 187 | 116 | 4 | 60 | 241 | 36 | 222 | 6.37e-28 | 109 |
| MS.gene38688.t1 | AT4G03270 | 30.620 | 258 | 160 | 6 | 79 | 331 | 48 | 291 | 6.34e-23 | 97.8 |
| MS.gene38688.t1 | AT4G03270 | 30.620 | 258 | 159 | 7 | 79 | 331 | 48 | 290 | 1.99e-21 | 93.6 |
| MS.gene38688.t1 | AT4G37630 | 38.136 | 118 | 72 | 1 | 92 | 209 | 75 | 191 | 1.68e-20 | 90.1 |
| MS.gene38688.t1 | AT4G37630 | 39.669 | 121 | 68 | 3 | 92 | 209 | 75 | 193 | 2.00e-20 | 89.7 |
| MS.gene38688.t1 | AT4G37630 | 39.669 | 121 | 68 | 3 | 92 | 209 | 75 | 193 | 4.68e-20 | 90.1 |
| MS.gene38688.t1 | AT5G02110 | 32.099 | 162 | 105 | 3 | 85 | 245 | 74 | 231 | 3.40e-17 | 82.0 |
| MS.gene38688.t1 | AT5G02110 | 35.200 | 125 | 76 | 3 | 122 | 245 | 82 | 202 | 3.95e-13 | 69.7 |
Find 59 sgRNAs with CRISPR-Local
Find 74 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCCAGCTTCTTGGTATTCT+TGG | 0.183134 | 3.3:+84578957 | MS.gene38688:CDS |
| GTTTATTGTTGTGTTGTTTA+AGG | 0.198020 | 3.3:-84578105 | None:intergenic |
| GACATTTCCATTACACCTTT+TGG | 0.225762 | 3.3:-84579210 | None:intergenic |
| TCTTTCTCTTGCTGCTAAAA+TGG | 0.227658 | 3.3:+84578415 | MS.gene38688:CDS |
| CTATAACCCAATGTTACTTT+TGG | 0.238967 | 3.3:+84578007 | MS.gene38688:CDS |
| TGTTAGAAACCGACATGTTT+TGG | 0.243497 | 3.3:+84578144 | MS.gene38688:CDS |
| GATGAGTTAGAGTTTGAGTT+TGG | 0.256399 | 3.3:+84578068 | MS.gene38688:CDS |
| CAATGCAACAAACGCAAGTT+TGG | 0.256632 | 3.3:+84579171 | MS.gene38688:CDS |
| TCTTGAAACCAACCCTGTTT+TGG | 0.259066 | 3.3:+84578226 | MS.gene38688:CDS |
| CTTCGAGCAGTTTCCAAAAC+AGG | 0.289915 | 3.3:-84578239 | None:intergenic |
| GTCTTGAGTTCTGATCTTCT+TGG | 0.314712 | 3.3:-84579310 | None:intergenic |
| GAGTTATCTACCTTCTGTTT+TGG | 0.348297 | 3.3:+84578872 | MS.gene38688:CDS |
| GAATATCAAATCCAGCTTCT+TGG | 0.360410 | 3.3:+84578948 | MS.gene38688:CDS |
| ATGAAGAATTTAATAGAAAC+TGG | 0.368473 | 3.3:-84579332 | None:intergenic |
| TTGCTGTCAACTATCTTGAT+AGG | 0.370220 | 3.3:+84578327 | MS.gene38688:CDS |
| CTTCTCTCTGTCATTAGATC+AGG | 0.392447 | 3.3:+84578741 | MS.gene38688:CDS |
| ATAAAAGAAAGAGGTGTTGC+TGG | 0.406180 | 3.3:-84578645 | None:intergenic |
| GATTGAAAGATCATCTTTGT+TGG | 0.408339 | 3.3:+84578691 | MS.gene38688:CDS |
| GTGATAATTCCAATGATTCA+TGG | 0.412862 | 3.3:+84579241 | MS.gene38688:CDS |
| AACAGCGTGGAGCCTAGTTT+AGG | 0.414590 | 3.3:+84578921 | MS.gene38688:CDS |
| ATTGAAAGATCATCTTTGTT+GGG | 0.438979 | 3.3:+84578692 | MS.gene38688:CDS |
| AATGCAACAAACGCAAGTTT+GGG | 0.445846 | 3.3:+84579172 | MS.gene38688:CDS |
| AGAAGCTGATGTTGAAACTA+TGG | 0.448803 | 3.3:+84579127 | MS.gene38688:CDS |
| ATCTTCTTGGACAAAGGCTC+TGG | 0.449002 | 3.3:-84579297 | None:intergenic |
| GTTTCAAGAAAGATGTAAAG+TGG | 0.463002 | 3.3:-84578212 | None:intergenic |
| ATGAGTTAGAGTTTGAGTTT+GGG | 0.468379 | 3.3:+84578069 | MS.gene38688:CDS |
| ATGGCTTCTCATTCTGAAAA+CGG | 0.471458 | 3.3:-84578364 | None:intergenic |
| AAGTAGTCCAAAAGGTGTAA+TGG | 0.473331 | 3.3:+84579203 | MS.gene38688:CDS |
| CTCGAAGAGAATCTATTGAA+TGG | 0.475440 | 3.3:+84578255 | MS.gene38688:CDS |
| TGATATTCATCTCCTAAACT+AGG | 0.476214 | 3.3:-84578933 | None:intergenic |
| TTCCAAGAATACCAAGAAGC+TGG | 0.476633 | 3.3:-84578959 | None:intergenic |
| AACGTATCCAAAAGTAACAT+TGG | 0.480126 | 3.3:-84578014 | None:intergenic |
| TGCTATAGCCCATGAATCAT+TGG | 0.482213 | 3.3:-84579250 | None:intergenic |
| ACTTGAAGATCTAGCAAAAG+AGG | 0.483959 | 3.3:-84578452 | None:intergenic |
| CTGATGTTGAAACTATGGTC+AGG | 0.487634 | 3.3:+84579132 | MS.gene38688:CDS |
| TTTCAAGAAAGATGTAAAGT+GGG | 0.508769 | 3.3:-84578211 | None:intergenic |
| ACGTATCCAAAAGTAACATT+GGG | 0.515111 | 3.3:-84578013 | None:intergenic |
| GTTCTGATCTTCTTGGACAA+AGG | 0.519437 | 3.3:-84579303 | None:intergenic |
| GTACTGTTCAGAAGAACATT+GGG | 0.522194 | 3.3:+84578037 | MS.gene38688:CDS |
| ACAAAATCAATAAAAGAAAG+AGG | 0.523440 | 3.3:-84578654 | None:intergenic |
| TGATAATTCCAATGATTCAT+GGG | 0.525327 | 3.3:+84579242 | MS.gene38688:CDS |
| TCAATTCCAAGTAGTCCAAA+AGG | 0.525691 | 3.3:+84579195 | MS.gene38688:CDS |
| TGTACTGTTCAGAAGAACAT+TGG | 0.536203 | 3.3:+84578036 | MS.gene38688:CDS |
| TGATACTTTCAACTCTTGGA+TGG | 0.538072 | 3.3:+84578613 | MS.gene38688:CDS |
| AGCAGTTTCCAAAACAGGGT+TGG | 0.546697 | 3.3:-84578234 | None:intergenic |
| GAGTTTCTTAAGAGATGTGA+AGG | 0.552834 | 3.3:+84578714 | MS.gene38688:CDS |
| TTCGAGCAGTTTCCAAAACA+GGG | 0.563113 | 3.3:-84578238 | None:intergenic |
| ATCTAGCAAAAGAGGAACAT+GGG | 0.578857 | 3.3:-84578444 | None:intergenic |
| CTATGGTCAGGGTATGAAGA+GGG | 0.582499 | 3.3:+84579144 | MS.gene38688:CDS |
| GATCTAGCAAAAGAGGAACA+TGG | 0.582627 | 3.3:-84578445 | None:intergenic |
| GTAGCAGTTGCCAAAACAGA+AGG | 0.597534 | 3.3:-84578882 | None:intergenic |
| GCTGCAAGCTGAGTCATCCA+TGG | 0.601969 | 3.3:-84578383 | None:intergenic |
| TTCTAACAAAGAACAAGTAG+TGG | 0.615213 | 3.3:-84578129 | None:intergenic |
| TGATGTTGAAACTATGGTCA+GGG | 0.619871 | 3.3:+84579133 | MS.gene38688:CDS |
| TTCATCGTCCCAAAACATGT+CGG | 0.630209 | 3.3:-84578153 | None:intergenic |
| CTGTTCAGAAGAACATTGGG+AGG | 0.651953 | 3.3:+84578040 | MS.gene38688:CDS |
| ACTATGGTCAGGGTATGAAG+AGG | 0.670130 | 3.3:+84579143 | MS.gene38688:CDS |
| TATGGTCAGGGTATGAAGAG+GGG | 0.674081 | 3.3:+84579145 | MS.gene38688:CDS |
| ATAATGGTTACAGGACAAGG+TGG | 0.720472 | 3.3:+84579095 | MS.gene38688:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATATTAATGTGGAATAA+TGG | + | chr3.3:84579079-84579098 | MS.gene38688:intron | 15.0% |
| !!! | TTGTTTTTGAAATTTTGTTT+AGG | + | chr3.3:84578536-84578555 | MS.gene38688:intron | 15.0% |
| !! | ACAAAATCAATAAAAGAAAG+AGG | - | chr3.3:84578657-84578676 | None:intergenic | 20.0% |
| !! | ATGAAGAATTTAATAGAAAC+TGG | - | chr3.3:84579335-84579354 | None:intergenic | 20.0% |
| ! | ATTGAAAGATCATCTTTGTT+GGG | + | chr3.3:84578692-84578711 | MS.gene38688:CDS | 25.0% |
| ! | TACTTCTATAGTTGAAACTA+TGG | + | chr3.3:84579046-84579065 | MS.gene38688:intron | 25.0% |
| ! | TGATAATTCCAATGATTCAT+GGG | + | chr3.3:84579242-84579261 | MS.gene38688:CDS | 25.0% |
| ! | TTTCAAGAAAGATGTAAAGT+GGG | - | chr3.3:84578214-84578233 | None:intergenic | 25.0% |
| !!! | ATTTTGATACTTTCAACTCT+TGG | + | chr3.3:84578609-84578628 | MS.gene38688:CDS | 25.0% |
| !!! | GTTTATTGTTGTGTTGTTTA+AGG | - | chr3.3:84578108-84578127 | None:intergenic | 25.0% |
| AACGTATCCAAAAGTAACAT+TGG | - | chr3.3:84578017-84578036 | None:intergenic | 30.0% | |
| ACGTATCCAAAAGTAACATT+GGG | - | chr3.3:84578016-84578035 | None:intergenic | 30.0% | |
| AGCAAAGACGATTAAAAAGA+TGG | + | chr3.3:84578584-84578603 | MS.gene38688:CDS | 30.0% | |
| GATTGAAAGATCATCTTTGT+TGG | + | chr3.3:84578691-84578710 | MS.gene38688:CDS | 30.0% | |
| GTGATAATTCCAATGATTCA+TGG | + | chr3.3:84579241-84579260 | MS.gene38688:CDS | 30.0% | |
| GTTTCAAGAAAGATGTAAAG+TGG | - | chr3.3:84578215-84578234 | None:intergenic | 30.0% | |
| TAATGTGGAATAATGGTTAC+AGG | + | chr3.3:84579086-84579105 | MS.gene38688:intron | 30.0% | |
| TGATATTCATCTCCTAAACT+AGG | - | chr3.3:84578936-84578955 | None:intergenic | 30.0% | |
| TTCTAACAAAGAACAAGTAG+TGG | - | chr3.3:84578132-84578151 | None:intergenic | 30.0% | |
| ! | ATGAGTTAGAGTTTGAGTTT+GGG | + | chr3.3:84578069-84578088 | MS.gene38688:CDS | 30.0% |
| ! | GATTTTGTCATAAGAAGACT+TGG | + | chr3.3:84578669-84578688 | MS.gene38688:CDS | 30.0% |
| !! | TTTTGTTTCTTTCAAGAGCT+AGG | - | chr3.3:84578487-84578506 | None:intergenic | 30.0% |
| !!! | CTATAACCCAATGTTACTTT+TGG | + | chr3.3:84578007-84578026 | MS.gene38688:CDS | 30.0% |
| AATGCAACAAACGCAAGTTT+GGG | + | chr3.3:84579172-84579191 | MS.gene38688:CDS | 35.0% | |
| ACTTGAAGATCTAGCAAAAG+AGG | - | chr3.3:84578455-84578474 | None:intergenic | 35.0% | |
| AGAAGCTGATGTTGAAACTA+TGG | + | chr3.3:84579127-84579146 | MS.gene38688:CDS | 35.0% | |
| ATCTAGCAAAAGAGGAACAT+GGG | - | chr3.3:84578447-84578466 | None:intergenic | 35.0% | |
| CTCGAAGAGAATCTATTGAA+TGG | + | chr3.3:84578255-84578274 | MS.gene38688:CDS | 35.0% | |
| GAATATCAAATCCAGCTTCT+TGG | + | chr3.3:84578948-84578967 | MS.gene38688:CDS | 35.0% | |
| GAGTTTCTTAAGAGATGTGA+AGG | + | chr3.3:84578714-84578733 | MS.gene38688:CDS | 35.0% | |
| GTACTGTTCAGAAGAACATT+GGG | + | chr3.3:84578037-84578056 | MS.gene38688:CDS | 35.0% | |
| TCAATTCCAAGTAGTCCAAA+AGG | + | chr3.3:84579195-84579214 | MS.gene38688:CDS | 35.0% | |
| TCTTTCTCTTGCTGCTAAAA+TGG | + | chr3.3:84578415-84578434 | MS.gene38688:CDS | 35.0% | |
| TGATACTTTCAACTCTTGGA+TGG | + | chr3.3:84578613-84578632 | MS.gene38688:CDS | 35.0% | |
| TGATGTTGAAACTATGGTCA+GGG | + | chr3.3:84579133-84579152 | MS.gene38688:CDS | 35.0% | |
| TGTACTGTTCAGAAGAACAT+TGG | + | chr3.3:84578036-84578055 | MS.gene38688:CDS | 35.0% | |
| TTGCTGTCAACTATCTTGAT+AGG | + | chr3.3:84578327-84578346 | MS.gene38688:CDS | 35.0% | |
| ! | AAGTAGTCCAAAAGGTGTAA+TGG | + | chr3.3:84579203-84579222 | MS.gene38688:CDS | 35.0% |
| ! | ATGGCTTCTCATTCTGAAAA+CGG | - | chr3.3:84578367-84578386 | None:intergenic | 35.0% |
| ! | ATTACACCTTTTGGACTACT+TGG | - | chr3.3:84579204-84579223 | None:intergenic | 35.0% |
| ! | GACATTTCCATTACACCTTT+TGG | - | chr3.3:84579213-84579232 | None:intergenic | 35.0% |
| ! | GAGTTATCTACCTTCTGTTT+TGG | + | chr3.3:84578872-84578891 | MS.gene38688:CDS | 35.0% |
| ! | GATGAGTTAGAGTTTGAGTT+TGG | + | chr3.3:84578068-84578087 | MS.gene38688:CDS | 35.0% |
| ! | GTTAGAAACCGACATGTTTT+GGG | + | chr3.3:84578145-84578164 | MS.gene38688:CDS | 35.0% |
| ! | TGTTAGAAACCGACATGTTT+TGG | + | chr3.3:84578144-84578163 | MS.gene38688:CDS | 35.0% |
| !! | ATAAAAGAAAGAGGTGTTGC+TGG | - | chr3.3:84578648-84578667 | None:intergenic | 35.0% |
| ATAATGGTTACAGGACAAGG+TGG | + | chr3.3:84579095-84579114 | MS.gene38688:intron | 40.0% | |
| ATCCAGCTTCTTGGTATTCT+TGG | + | chr3.3:84578957-84578976 | MS.gene38688:CDS | 40.0% | |
| CAATGCAACAAACGCAAGTT+TGG | + | chr3.3:84579171-84579190 | MS.gene38688:CDS | 40.0% | |
| CTGATGTTGAAACTATGGTC+AGG | + | chr3.3:84579132-84579151 | MS.gene38688:CDS | 40.0% | |
| CTTCTCTCTGTCATTAGATC+AGG | + | chr3.3:84578741-84578760 | MS.gene38688:CDS | 40.0% | |
| GATCTAGCAAAAGAGGAACA+TGG | - | chr3.3:84578448-84578467 | None:intergenic | 40.0% | |
| GGAATAATGGTTACAGGACA+AGG | + | chr3.3:84579092-84579111 | MS.gene38688:intron | 40.0% | |
| GTTCTGATCTTCTTGGACAA+AGG | - | chr3.3:84579306-84579325 | None:intergenic | 40.0% | |
| TGCTATAGCCCATGAATCAT+TGG | - | chr3.3:84579253-84579272 | None:intergenic | 40.0% | |
| TTCATCGTCCCAAAACATGT+CGG | - | chr3.3:84578156-84578175 | None:intergenic | 40.0% | |
| TTCCAAGAATACCAAGAAGC+TGG | - | chr3.3:84578962-84578981 | None:intergenic | 40.0% | |
| TTCGAGCAGTTTCCAAAACA+GGG | - | chr3.3:84578241-84578260 | None:intergenic | 40.0% | |
| ! | GTCTTGAGTTCTGATCTTCT+TGG | - | chr3.3:84579313-84579332 | None:intergenic | 40.0% |
| ! | GTTTTCAGAATGAGAAGCCA+TGG | + | chr3.3:84578366-84578385 | MS.gene38688:CDS | 40.0% |
| ! | TCTTGAAACCAACCCTGTTT+TGG | + | chr3.3:84578226-84578245 | MS.gene38688:CDS | 40.0% |
| !!! | TGTTTTGGCAACTGCTACAA+TGG | + | chr3.3:84578887-84578906 | MS.gene38688:CDS | 40.0% |
| ACTATGGTCAGGGTATGAAG+AGG | + | chr3.3:84579143-84579162 | MS.gene38688:CDS | 45.0% | |
| AGCAGTTTCCAAAACAGGGT+TGG | - | chr3.3:84578237-84578256 | None:intergenic | 45.0% | |
| ATCTTCTTGGACAAAGGCTC+TGG | - | chr3.3:84579300-84579319 | None:intergenic | 45.0% | |
| CTATGGTCAGGGTATGAAGA+GGG | + | chr3.3:84579144-84579163 | MS.gene38688:CDS | 45.0% | |
| CTGTTCAGAAGAACATTGGG+AGG | + | chr3.3:84578040-84578059 | MS.gene38688:CDS | 45.0% | |
| CTTCGAGCAGTTTCCAAAAC+AGG | - | chr3.3:84578242-84578261 | None:intergenic | 45.0% | |
| GTAGCAGTTGCCAAAACAGA+AGG | - | chr3.3:84578885-84578904 | None:intergenic | 45.0% | |
| TATGGTCAGGGTATGAAGAG+GGG | + | chr3.3:84579145-84579164 | MS.gene38688:CDS | 45.0% | |
| ! | GGTTCATGTTTTCAACAGCG+TGG | + | chr3.3:84578908-84578927 | MS.gene38688:CDS | 45.0% |
| !! | TATTAATATTAATATTAATG+TGG | + | chr3.3:84579071-84579090 | MS.gene38688:intron | 5.0% |
| AACAGCGTGGAGCCTAGTTT+AGG | + | chr3.3:84578921-84578940 | MS.gene38688:CDS | 50.0% | |
| GCTGCAAGCTGAGTCATCCA+TGG | - | chr3.3:84578386-84578405 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 84577993 | 84579356 | 84577993 | ID=MS.gene38688 |
| chr3.3 | mRNA | 84577993 | 84579356 | 84577993 | ID=MS.gene38688.t1;Parent=MS.gene38688 |
| chr3.3 | exon | 84577993 | 84578472 | 84577993 | ID=MS.gene38688.t1.exon1;Parent=MS.gene38688.t1 |
| chr3.3 | CDS | 84577993 | 84578472 | 84577993 | ID=cds.MS.gene38688.t1;Parent=MS.gene38688.t1 |
| chr3.3 | exon | 84578558 | 84578762 | 84578558 | ID=MS.gene38688.t1.exon2;Parent=MS.gene38688.t1 |
| chr3.3 | CDS | 84578558 | 84578762 | 84578558 | ID=cds.MS.gene38688.t1;Parent=MS.gene38688.t1 |
| chr3.3 | exon | 84578859 | 84578989 | 84578859 | ID=MS.gene38688.t1.exon3;Parent=MS.gene38688.t1 |
| chr3.3 | CDS | 84578859 | 84578989 | 84578859 | ID=cds.MS.gene38688.t1;Parent=MS.gene38688.t1 |
| chr3.3 | exon | 84579108 | 84579356 | 84579108 | ID=MS.gene38688.t1.exon4;Parent=MS.gene38688.t1 |
| chr3.3 | CDS | 84579108 | 84579356 | 84579108 | ID=cds.MS.gene38688.t1;Parent=MS.gene38688.t1 |
| Gene Sequence |
| Protein sequence |
