Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38786.t1 | XP_003625031.1 | 98.8 | 167 | 2 | 0 | 1 | 167 | 1 | 167 | 1.30E-86 | 328.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38786.t1 | Q9M1J1 | 65.1 | 169 | 56 | 1 | 1 | 166 | 1 | 169 | 2.9e-58 | 226.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38786.t1 | A2Q2Z4 | 98.8 | 167 | 2 | 0 | 1 | 167 | 1 | 167 | 9.6e-87 | 328.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04915 | MS.gene38786 | 0.81777 | 2.77E-52 | -1.69E-46 |
| MS.gene04917 | MS.gene38786 | 0.815171 | 1.06E-51 | -1.69E-46 |
| MS.gene04984 | MS.gene38786 | 0.811025 | 8.60E-51 | -1.69E-46 |
| MS.gene050114 | MS.gene38786 | 0.814058 | 1.87E-51 | -1.69E-46 |
| MS.gene050288 | MS.gene38786 | 0.80344 | 3.48E-49 | -1.69E-46 |
| MS.gene050317 | MS.gene38786 | 0.836593 | 8.54E-57 | -1.69E-46 |
| MS.gene051245 | MS.gene38786 | 0.818178 | 2.24E-52 | -1.69E-46 |
| MS.gene051748 | MS.gene38786 | 0.820982 | 5.14E-53 | -1.69E-46 |
| MS.gene051756 | MS.gene38786 | 0.829007 | 6.55E-55 | -1.69E-46 |
| MS.gene051757 | MS.gene38786 | 0.810343 | 1.21E-50 | -1.69E-46 |
| MS.gene051903 | MS.gene38786 | 0.818217 | 2.20E-52 | -1.69E-46 |
| MS.gene051987 | MS.gene38786 | 0.802322 | 5.93E-49 | -1.69E-46 |
| MS.gene053058 | MS.gene38786 | 0.801997 | 6.91E-49 | -1.69E-46 |
| MS.gene053109 | MS.gene38786 | 0.819115 | 1.38E-52 | -1.69E-46 |
| MS.gene05344 | MS.gene38786 | -0.831187 | 1.92E-55 | -1.69E-46 |
| MS.gene055441 | MS.gene38786 | 0.821618 | 3.67E-53 | -1.69E-46 |
| MS.gene056580 | MS.gene38786 | 0.80841 | 3.14E-50 | -1.69E-46 |
| MS.gene056752 | MS.gene38786 | 0.80136 | 9.34E-49 | -1.69E-46 |
| MS.gene056787 | MS.gene38786 | 0.825244 | 5.21E-54 | -1.69E-46 |
| MS.gene056849 | MS.gene38786 | 0.830327 | 3.13E-55 | -1.69E-46 |
| MS.gene057094 | MS.gene38786 | 0.819769 | 9.76E-53 | -1.69E-46 |
| MS.gene057234 | MS.gene38786 | 0.825918 | 3.61E-54 | -1.69E-46 |
| MS.gene057451 | MS.gene38786 | -0.801719 | 7.89E-49 | -1.69E-46 |
| MS.gene057452 | MS.gene38786 | -0.825774 | 3.90E-54 | -1.69E-46 |
| MS.gene057999 | MS.gene38786 | 0.831202 | 1.91E-55 | -1.69E-46 |
| MS.gene058054 | MS.gene38786 | 0.814935 | 1.20E-51 | -1.69E-46 |
| MS.gene058055 | MS.gene38786 | 0.811071 | 8.41E-51 | -1.69E-46 |
| MS.gene058074 | MS.gene38786 | 0.816923 | 4.31E-52 | -1.69E-46 |
| MS.gene058182 | MS.gene38786 | 0.808592 | 2.87E-50 | -1.69E-46 |
| MS.gene058238 | MS.gene38786 | 0.8476 | 1.04E-59 | -1.69E-46 |
| MS.gene058758 | MS.gene38786 | 0.814035 | 1.89E-51 | -1.69E-46 |
| MS.gene059050 | MS.gene38786 | 0.830745 | 2.47E-55 | -1.69E-46 |
| MS.gene060297 | MS.gene38786 | 0.815211 | 1.04E-51 | -1.69E-46 |
| MS.gene060563 | MS.gene38786 | 0.805292 | 1.43E-49 | -1.69E-46 |
| MS.gene060869 | MS.gene38786 | 0.812738 | 3.64E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38786.t1 | MTR_7g090210 | 98.802 | 167 | 2 | 0 | 1 | 167 | 1 | 167 | 8.77e-122 | 340 |
| MS.gene38786.t1 | MTR_7g090210 | 96.667 | 120 | 4 | 0 | 1 | 120 | 1 | 120 | 1.55e-85 | 247 |
| MS.gene38786.t1 | MTR_5g090010 | 63.095 | 168 | 61 | 1 | 1 | 167 | 4 | 171 | 2.13e-75 | 223 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38786.t1 | AT3G57090 | 64.706 | 170 | 57 | 1 | 1 | 167 | 1 | 170 | 9.39e-80 | 234 |
| MS.gene38786.t1 | AT3G57090 | 64.706 | 170 | 57 | 1 | 1 | 167 | 1 | 170 | 9.39e-80 | 234 |
| MS.gene38786.t1 | AT5G12390 | 55.357 | 168 | 67 | 2 | 1 | 163 | 1 | 165 | 1.55e-63 | 193 |
Find 47 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTAGGAGTCGGCAGCTTC+TGG | 0.252357 | 7.1:-17143110 | MS.gene38786:CDS |
| ATGTATAGATTCAATTCTTT+CGG | 0.289178 | 7.1:+17141759 | None:intergenic |
| TGTATAGATTCAATTCTTTC+GGG | 0.299564 | 7.1:+17141760 | None:intergenic |
| ATTATGATTCGCAGCTTCTT+TGG | 0.302296 | 7.1:-17143209 | MS.gene38786:intron |
| TTCTTGCTGTTGGGTACTAC+AGG | 0.348000 | 7.1:-17143144 | MS.gene38786:CDS |
| GGCATCACTGCAACAGCTGC+AGG | 0.350680 | 7.1:-17141815 | MS.gene38786:CDS |
| AGCTTTATCTTCTTGCTGTT+GGG | 0.356980 | 7.1:-17143153 | MS.gene38786:CDS |
| GCAGCTTCTGGAGCAATGTT+TGG | 0.361994 | 7.1:-17143098 | MS.gene38786:CDS |
| TTATGATTCGCAGCTTCTTT+GGG | 0.372741 | 7.1:-17143208 | MS.gene38786:intron |
| CCTTGCAGATTGCACCTGAT+TGG | 0.393005 | 7.1:-17141970 | MS.gene38786:intron |
| CATGGGCACTTGTTCATTCA+AGG | 0.399932 | 7.1:-17144088 | MS.gene38786:CDS |
| GCAGATGGTGTAATAGGAAT+TGG | 0.406309 | 7.1:-17141836 | MS.gene38786:intron |
| AAGCTTTATCTTCTTGCTGT+TGG | 0.416064 | 7.1:-17143154 | MS.gene38786:CDS |
| AGCTTCTCTCTTTGATGTAA+AGG | 0.431754 | 7.1:+17143172 | None:intergenic |
| GCTCATGCAGATGGTGTAAT+AGG | 0.436512 | 7.1:-17141842 | MS.gene38786:intron |
| GACAATGCCTGCCTCCAATC+AGG | 0.442415 | 7.1:+17141956 | None:intergenic |
| TCGTCGATGGAGGCTAAAAT+CGG | 0.445374 | 7.1:-17144613 | None:intergenic |
| GCTTCTGGAGCAATGTTTGG+AGG | 0.445797 | 7.1:-17143095 | MS.gene38786:intron |
| TCCCTCGGAAACTTCTTTAC+CGG | 0.457316 | 7.1:-17144577 | MS.gene38786:CDS |
| GAAGTTGCAGAGGCTTCTAA+TGG | 0.471526 | 7.1:-17144152 | MS.gene38786:CDS |
| GGAAGCTTCTTTGAATCCCT+CGG | 0.481996 | 7.1:-17144592 | MS.gene38786:CDS |
| TGCAGATTGCACCTGATTGG+AGG | 0.488276 | 7.1:-17141967 | MS.gene38786:intron |
| TGGTGTCATTGCTGCAGCAT+TGG | 0.513273 | 7.1:-17141783 | MS.gene38786:CDS |
| TCCAGAAGCTGCCGACTCCT+AGG | 0.515588 | 7.1:+17143109 | None:intergenic |
| AGTAATTATACTTTCGAGCA+TGG | 0.516555 | 7.1:+17144037 | None:intergenic |
| CCGGCGGCGATCAGATCCCT+TGG | 0.523323 | 7.1:-17144558 | MS.gene38786:CDS |
| AGAGCATAATGAGGTTGTCA+TGG | 0.535428 | 7.1:-17144106 | MS.gene38786:CDS |
| ACAGGGCTACTGATTATCCT+AGG | 0.548719 | 7.1:-17143126 | MS.gene38786:CDS |
| GTCGAAGAACGAATTGCAAA+GGG | 0.553821 | 7.1:-17141920 | MS.gene38786:intron |
| GATTGCACCTGATTGGAGGC+AGG | 0.564228 | 7.1:-17141963 | MS.gene38786:CDS |
| CCAAGGGATCTGATCGCCGC+CGG | 0.574729 | 7.1:+17144558 | None:intergenic |
| TCTTGCTGTTGGGTACTACA+GGG | 0.577328 | 7.1:-17143143 | MS.gene38786:CDS |
| GAGCATAATGAGGTTGTCAT+GGG | 0.590973 | 7.1:-17144105 | MS.gene38786:CDS |
| AGTCGAAGAACGAATTGCAA+AGG | 0.598958 | 7.1:-17141921 | MS.gene38786:CDS |
| CTGTGAAAGAGAAGTTGCAG+AGG | 0.603501 | 7.1:-17144162 | MS.gene38786:CDS |
| GCATCACTGCAACAGCTGCA+GGG | 0.604640 | 7.1:-17141814 | MS.gene38786:CDS |
| TGACATCACGGTCGCACCAA+GGG | 0.605500 | 7.1:+17144542 | None:intergenic |
| CTACTGATTATCCTAGGAGT+CGG | 0.615715 | 7.1:-17143120 | MS.gene38786:CDS |
| CGCCGGTAAAGAAGTTTCCG+AGG | 0.620017 | 7.1:+17144575 | None:intergenic |
| GCCGGTAAAGAAGTTTCCGA+GGG | 0.620980 | 7.1:+17144576 | None:intergenic |
| CTCGGAAACTTCTTTACCGG+CGG | 0.628306 | 7.1:-17144574 | MS.gene38786:CDS |
| ATGACATCACGGTCGCACCA+AGG | 0.644581 | 7.1:+17144541 | None:intergenic |
| GTAAGAATGAGAGCATAATG+AGG | 0.656100 | 7.1:-17144115 | MS.gene38786:CDS |
| TTTCGAGCATGGCAATCCCA+CGG | 0.664812 | 7.1:+17144048 | None:intergenic |
| AACAAGAAGATATTCACCGT+GGG | 0.666532 | 7.1:-17144064 | MS.gene38786:CDS |
| AAGTTACAGAGATGACATCA+CGG | 0.723970 | 7.1:+17144530 | None:intergenic |
| CAACAAGAAGATATTCACCG+TGG | 0.736975 | 7.1:-17144065 | MS.gene38786:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAATATAAGAAAAAATATT+CGG | + | chr7.1:17142367-17142386 | None:intergenic | 10.0% |
| !! | AAACAGTAATAAGAAAAAAC+CGG | + | chr7.1:17144137-17144156 | None:intergenic | 20.0% |
| !! | AATCATATTCATATGTTCAT+TGG | - | chr7.1:17142461-17142480 | MS.gene38786:intron | 20.0% |
| !! | ATAATAATTATGGATGTACA+AGG | + | chr7.1:17143152-17143171 | None:intergenic | 20.0% |
| !! | ATGCAATACAACTAAAATAA+TGG | - | chr7.1:17142729-17142748 | MS.gene38786:intron | 20.0% |
| !! | TCAAAAAAGCTATTAATTTC+CGG | + | chr7.1:17141951-17141970 | None:intergenic | 20.0% |
| !! | TGGATCAAAATAAAATCAAT+GGG | + | chr7.1:17144194-17144213 | None:intergenic | 20.0% |
| !! | TTCTGATTATTATTCTGTAT+AGG | - | chr7.1:17142383-17142402 | MS.gene38786:intron | 20.0% |
| !!! | ATTTTGATTTGTTTGAGTTT+AGG | - | chr7.1:17142071-17142090 | MS.gene38786:intron | 20.0% |
| !!! | TCTTTTATCTCTAAATTTTG+AGG | - | chr7.1:17144375-17144394 | MS.gene38786:intron | 20.0% |
| !!! | TTTGTTTTGATTTTCTCTTT+GGG | - | chr7.1:17143423-17143442 | MS.gene38786:intron | 20.0% |
| !!! | TTTTGATTTGTTTGAGTTTA+GGG | - | chr7.1:17142072-17142091 | MS.gene38786:intron | 20.0% |
| ! | AACATCAATCATATCTCTTT+AGG | + | chr7.1:17143098-17143117 | None:intergenic | 25.0% |
| ! | AAGAAATAACATGAATTGAG+AGG | + | chr7.1:17141890-17141909 | None:intergenic | 25.0% |
| ! | ACATCAATCATATCTCTTTA+GGG | + | chr7.1:17143097-17143116 | None:intergenic | 25.0% |
| ! | ACTCAAACAAATCAAAATTG+AGG | + | chr7.1:17142069-17142088 | None:intergenic | 25.0% |
| ! | AGAAATAACATGAATTGAGA+GGG | + | chr7.1:17141889-17141908 | None:intergenic | 25.0% |
| ! | ATAACAAATTCCTTCAGAAA+CGG | - | chr7.1:17143830-17143849 | MS.gene38786:intron | 25.0% |
| ! | ATCGCATTAACATTAACTAA+TGG | - | chr7.1:17144504-17144523 | MS.gene38786:intron | 25.0% |
| ! | ATTATTCTGTATAGGTTCAT+TGG | - | chr7.1:17142391-17142410 | MS.gene38786:intron | 25.0% |
| ! | CAAATTAATGTAACTTCTCT+TGG | - | chr7.1:17142616-17142635 | MS.gene38786:intron | 25.0% |
| ! | CTCAAACAAATCAAAATTGA+GGG | + | chr7.1:17142068-17142087 | None:intergenic | 25.0% |
| ! | GAACTAATTGTTGAAAAAAC+AGG | + | chr7.1:17143512-17143531 | None:intergenic | 25.0% |
| ! | GTGGATCAAAATAAAATCAA+TGG | + | chr7.1:17144195-17144214 | None:intergenic | 25.0% |
| ! | TAACAATATGAACATACACT+GGG | + | chr7.1:17143394-17143413 | None:intergenic | 25.0% |
| ! | TATAGAACACAATGATTCTT+CGG | - | chr7.1:17144019-17144038 | MS.gene38786:intron | 25.0% |
| ! | TATCACACAAACTTTAATGT+AGG | - | chr7.1:17142806-17142825 | MS.gene38786:intron | 25.0% |
| ! | TATTCACAAATATCAGCATA+AGG | + | chr7.1:17144227-17144246 | None:intergenic | 25.0% |
| !! | ACCAGATTGAAAATTTTATC+TGG | - | chr7.1:17142106-17142125 | MS.gene38786:intron | 25.0% |
| !! | ATTTTCAATCTGGTTATGAA+AGG | + | chr7.1:17142100-17142119 | None:intergenic | 25.0% |
| !! | CCAGATTGAAAATTTTATCT+GGG | - | chr7.1:17142107-17142126 | MS.gene38786:intron | 25.0% |
| !! | TATATTTTTCTTGCCTTTTC+TGG | - | chr7.1:17143343-17143362 | MS.gene38786:intron | 25.0% |
| !!! | CTTTGTTTTGATTTTCTCTT+TGG | - | chr7.1:17143422-17143441 | MS.gene38786:intron | 25.0% |
| !!! | TTTCATTGCATTGTTTTGAA+GGG | - | chr7.1:17142191-17142210 | MS.gene38786:intron | 25.0% |
| !!! | TTTTCATTGCATTGTTTTGA+AGG | - | chr7.1:17142190-17142209 | MS.gene38786:intron | 25.0% |
| AAAAAAACACATAGCACGAA+AGG | + | chr7.1:17143068-17143087 | None:intergenic | 30.0% | |
| ACAAACTTTAATGTAGGAGT+AGG | - | chr7.1:17142812-17142831 | MS.gene38786:intron | 30.0% | |
| ACTGCTAATAACAAAGGAAA+GGG | + | chr7.1:17143687-17143706 | None:intergenic | 30.0% | |
| AGTAATTATACTTTCGAGCA+TGG | + | chr7.1:17142342-17142361 | None:intergenic | 30.0% | |
| ATTACTGTTTGTATGTGAGT+GGG | - | chr7.1:17144147-17144166 | MS.gene38786:CDS | 30.0% | |
| ATTGTGTTCTATAGGAAATG+TGG | + | chr7.1:17144012-17144031 | None:intergenic | 30.0% | |
| GAAGAATCATTGTGTTCTAT+AGG | + | chr7.1:17144020-17144039 | None:intergenic | 30.0% | |
| GCTGCGAATCATAATAATTA+TGG | + | chr7.1:17143162-17143181 | None:intergenic | 30.0% | |
| GGAAAGAGATCTCAAATTAT+AGG | + | chr7.1:17143635-17143654 | None:intergenic | 30.0% | |
| GTAACAATATGAACATACAC+TGG | + | chr7.1:17143395-17143414 | None:intergenic | 30.0% | |
| TATTACTGTTTGTATGTGAG+TGG | - | chr7.1:17144146-17144165 | MS.gene38786:CDS | 30.0% | |
| TATTATGCCCTTTATATGCA+TGG | - | chr7.1:17143122-17143141 | MS.gene38786:CDS | 30.0% | |
| TATTCAAGATGCTATCAGTT+AGG | - | chr7.1:17143659-17143678 | MS.gene38786:intron | 30.0% | |
| TGAATTGCAAATACACTGTT+TGG | - | chr7.1:17142154-17142173 | MS.gene38786:intron | 30.0% | |
| TGATAGCATCTTGAATAACA+AGG | + | chr7.1:17143656-17143675 | None:intergenic | 30.0% | |
| TTACTAAATTAGCGTGTGAA+GGG | - | chr7.1:17142844-17142863 | MS.gene38786:intron | 30.0% | |
| TTTACTAAATTAGCGTGTGA+AGG | - | chr7.1:17142843-17142862 | MS.gene38786:intron | 30.0% | |
| TTTGTGACTGCTAATAACAA+AGG | + | chr7.1:17143693-17143712 | None:intergenic | 30.0% | |
| ! | CCCAGATAAAATTTTCAATC+TGG | + | chr7.1:17142110-17142129 | None:intergenic | 30.0% |
| ! | TACATTAATTTGAGCACAAC+AGG | + | chr7.1:17142608-17142627 | None:intergenic | 30.0% |
| ! | TTCTTCGACTGTTTTCTTAA+GGG | + | chr7.1:17144445-17144464 | None:intergenic | 30.0% |
| ! | TTGTTATTAGCAGTCACAAA+AGG | - | chr7.1:17143693-17143712 | MS.gene38786:intron | 30.0% |
| !! | AACGGTTTTATATCGTTGAT+TGG | - | chr7.1:17143848-17143867 | MS.gene38786:intron | 30.0% |
| !! | AAGGAATTTGTTATCCACAA+AGG | + | chr7.1:17143824-17143843 | None:intergenic | 30.0% |
| !! | ATTTTATCTGGGATTATTGC+TGG | - | chr7.1:17142118-17142137 | MS.gene38786:intron | 30.0% |
| !! | GTTTTATATCGTTGATTGGT+CGG | - | chr7.1:17143852-17143871 | MS.gene38786:intron | 30.0% |
| !! | TTTTAGAAGTAGATCTGTCA+AGG | - | chr7.1:17143972-17143991 | MS.gene38786:intron | 30.0% |
| AACAAGAAGATATTCACCGT+GGG | - | chr7.1:17142312-17142331 | MS.gene38786:intron | 35.0% | |
| AAGTTACAGAGATGACATCA+CGG | + | chr7.1:17141849-17141868 | None:intergenic | 35.0% | |
| ACAACTAGCAATGAAGACAT+TGG | + | chr7.1:17142654-17142673 | None:intergenic | 35.0% | |
| ACTCAGAATTTCAATTGTGC+CGG | - | chr7.1:17141929-17141948 | MS.gene38786:CDS | 35.0% | |
| ACTTTAATGTAGGAGTAGGA+CGG | - | chr7.1:17142816-17142835 | MS.gene38786:intron | 35.0% | |
| AGCTTCTCTCTTTGATGTAA+AGG | + | chr7.1:17143207-17143226 | None:intergenic | 35.0% | |
| AGCTTGAGAGGAAAATCTAA+CGG | - | chr7.1:17142885-17142904 | MS.gene38786:intron | 35.0% | |
| AGTCCTTTGTCTAACATGAA+CGG | - | chr7.1:17144337-17144356 | MS.gene38786:intron | 35.0% | |
| ATCACAAGACGTAGAATAGA+CGG | + | chr7.1:17142492-17142511 | None:intergenic | 35.0% | |
| ATTATGATTCGCAGCTTCTT+TGG | - | chr7.1:17143167-17143186 | MS.gene38786:CDS | 35.0% | |
| CCATGCCTGTTATTACATAT+GGG | - | chr7.1:17144045-17144064 | MS.gene38786:intron | 35.0% | |
| CGATATAAAACCGTTTCTGA+AGG | + | chr7.1:17143843-17143862 | None:intergenic | 35.0% | |
| CTTCTTAGTGAGAGGTTTAT+TGG | - | chr7.1:17143793-17143812 | MS.gene38786:intron | 35.0% | |
| GACTGCTAATAACAAAGGAA+AGG | + | chr7.1:17143688-17143707 | None:intergenic | 35.0% | |
| GATACATTGTCTATGTGATG+TGG | - | chr7.1:17143550-17143569 | MS.gene38786:intron | 35.0% | |
| GCAGTTGGAATTATTCATTC+AGG | + | chr7.1:17142693-17142712 | None:intergenic | 35.0% | |
| GCTTTCCCATATGTAATAAC+AGG | + | chr7.1:17144053-17144072 | None:intergenic | 35.0% | |
| GTTTATTGGACAATCCTTTG+TGG | - | chr7.1:17143807-17143826 | MS.gene38786:intron | 35.0% | |
| TATAGGAAATGTGGAGAATC+AGG | + | chr7.1:17144003-17144022 | None:intergenic | 35.0% | |
| TCAACGCTATATTGCATACT+CGG | - | chr7.1:17142523-17142542 | MS.gene38786:intron | 35.0% | |
| TCAAGCTGGTCCAATTATAA+TGG | + | chr7.1:17142872-17142891 | None:intergenic | 35.0% | |
| TCCATGCCTGTTATTACATA+TGG | - | chr7.1:17144044-17144063 | MS.gene38786:intron | 35.0% | |
| TGGATATTGGATACTTCACA+AGG | + | chr7.1:17143457-17143476 | None:intergenic | 35.0% | |
| TTATGATTCGCAGCTTCTTT+GGG | - | chr7.1:17143168-17143187 | MS.gene38786:CDS | 35.0% | |
| TTCTACGTCTTGTGATTTCT+TGG | - | chr7.1:17142496-17142515 | MS.gene38786:intron | 35.0% | |
| TTGGAATTATTCATTCAGGC+TGG | + | chr7.1:17142689-17142708 | None:intergenic | 35.0% | |
| TTTAATAAACCCAGCTGGAT+TGG | - | chr7.1:17143719-17143738 | MS.gene38786:intron | 35.0% | |
| ! | AAAAAACCGGCTCTCTAATA+TGG | + | chr7.1:17144124-17144143 | None:intergenic | 35.0% |
| ! | AAAATTGAGGGCGCAAAATA+TGG | + | chr7.1:17142056-17142075 | None:intergenic | 35.0% |
| ! | AAGCTTTATCTTCTTGCTGT+TGG | - | chr7.1:17143222-17143241 | MS.gene38786:intron | 35.0% |
| ! | GTAAGAATGAGAGCATAATG+AGG | - | chr7.1:17142261-17142280 | MS.gene38786:intron | 35.0% |
| ! | GTTCTTCGACTGTTTTCTTA+AGG | + | chr7.1:17144446-17144465 | None:intergenic | 35.0% |
| !! | AGCTTTATCTTCTTGCTGTT+GGG | - | chr7.1:17143223-17143242 | MS.gene38786:intron | 35.0% |
| AAAACACATAGCACGAAAGG+AGG | + | chr7.1:17143065-17143084 | None:intergenic | 40.0% | |
| AAACACATAGCACGAAAGGA+GGG | + | chr7.1:17143064-17143083 | None:intergenic | 40.0% | |
| AAGGTCAGCCATGCATATAA+AGG | + | chr7.1:17143133-17143152 | None:intergenic | 40.0% | |
| ACGTGATTGTTTACGAAAGC+AGG | - | chr7.1:17143881-17143900 | MS.gene38786:intron | 40.0% | |
| AGAGCATAATGAGGTTGTCA+TGG | - | chr7.1:17142270-17142289 | MS.gene38786:intron | 40.0% | |
| AGAGTCAACACAGTGGATAT+TGG | + | chr7.1:17143470-17143489 | None:intergenic | 40.0% | |
| AGGTCAGCCATGCATATAAA+GGG | + | chr7.1:17143132-17143151 | None:intergenic | 40.0% | |
| AGTCGAAGAACGAATTGCAA+AGG | - | chr7.1:17144455-17144474 | MS.gene38786:intron | 40.0% | |
| ATGGGAAAGCTGATAACACT+AGG | - | chr7.1:17144063-17144082 | MS.gene38786:CDS | 40.0% | |
| CAACAAGAAGATATTCACCG+TGG | - | chr7.1:17142311-17142330 | MS.gene38786:intron | 40.0% | |
| CAGACATACTTCTTAGTGAG+AGG | - | chr7.1:17143785-17143804 | MS.gene38786:intron | 40.0% | |
| CAGCATAAGGTCATTAGTAG+TGG | + | chr7.1:17144214-17144233 | None:intergenic | 40.0% | |
| CCCATATGTAATAACAGGCA+TGG | + | chr7.1:17144048-17144067 | None:intergenic | 40.0% | |
| GAACCGTTCATGTTAGACAA+AGG | + | chr7.1:17144343-17144362 | None:intergenic | 40.0% | |
| GAGCATAATGAGGTTGTCAT+GGG | - | chr7.1:17142271-17142290 | MS.gene38786:intron | 40.0% | |
| GCAGATGGTGTAATAGGAAT+TGG | - | chr7.1:17144540-17144559 | MS.gene38786:CDS | 40.0% | |
| GTCGAAGAACGAATTGCAAA+GGG | - | chr7.1:17144456-17144475 | MS.gene38786:intron | 40.0% | |
| GTTGGAGGAAGTTTAGATCA+TGG | + | chr7.1:17142921-17142940 | None:intergenic | 40.0% | |
| TAGCAGCTATATGTGACAGA+AGG | + | chr7.1:17142570-17142589 | None:intergenic | 40.0% | |
| TATAATTGGACCAGCTTGAG+AGG | - | chr7.1:17142873-17142892 | MS.gene38786:intron | 40.0% | |
| TCACAAGACGTAGAATAGAC+GGG | + | chr7.1:17142491-17142510 | None:intergenic | 40.0% | |
| TGATGATCTGACACCAGAAA+AGG | + | chr7.1:17143359-17143378 | None:intergenic | 40.0% | |
| TGATTGTTTACGAAAGCAGG+AGG | - | chr7.1:17143884-17143903 | MS.gene38786:intron | 40.0% | |
| TGGCTTAGTAGAAACATGCT+AGG | - | chr7.1:17143739-17143758 | MS.gene38786:intron | 40.0% | |
| TGTTCACCATATTAGAGAGC+CGG | - | chr7.1:17144115-17144134 | MS.gene38786:CDS | 40.0% | |
| ! | ATATCGTTGATTGGTCGGTA+TGG | - | chr7.1:17143857-17143876 | MS.gene38786:intron | 40.0% |
| ! | ATCTGGGATTATTGCTGGAA+TGG | - | chr7.1:17142123-17142142 | MS.gene38786:intron | 40.0% |
| ! | CTACTGATTATCCTAGGAGT+CGG | - | chr7.1:17143256-17143275 | MS.gene38786:intron | 40.0% |
| ! | GGACTTTTAATAAACCCAGC+TGG | - | chr7.1:17143714-17143733 | MS.gene38786:intron | 40.0% |
| ! | GTGATGTGGATGCTTTTGTT+GGG | - | chr7.1:17143564-17143583 | MS.gene38786:intron | 40.0% |
| ! | GTTAGATTTTCCTCTCAAGC+TGG | + | chr7.1:17142886-17142905 | None:intergenic | 40.0% |
| ! | TGTGATGTGGATGCTTTTGT+TGG | - | chr7.1:17143563-17143582 | MS.gene38786:intron | 40.0% |
| ! | TGTGTTACTCTTGATGCAGT+TGG | + | chr7.1:17142708-17142727 | None:intergenic | 40.0% |
| !! | GTGAAGGGCACCATTATAAT+TGG | - | chr7.1:17142859-17142878 | MS.gene38786:intron | 40.0% |
| AGAAGTCTGCTTTGCATCGT+TGG | + | chr7.1:17142939-17142958 | None:intergenic | 45.0% | |
| AGAGGGATGAGAGAAAGAAG+AGG | + | chr7.1:17141872-17141891 | None:intergenic | 45.0% | |
| CATGGGCACTTGTTCATTCA+AGG | - | chr7.1:17142288-17142307 | MS.gene38786:intron | 45.0% | |
| CTGTGAAAGAGAAGTTGCAG+AGG | - | chr7.1:17142214-17142233 | MS.gene38786:intron | 45.0% | |
| GAAGTTGCAGAGGCTTCTAA+TGG | - | chr7.1:17142224-17142243 | MS.gene38786:intron | 45.0% | |
| GCTCATGCAGATGGTGTAAT+AGG | - | chr7.1:17144534-17144553 | MS.gene38786:intron | 45.0% | |
| GGAAGCTTCTTTGAATCCCT+CGG | - | chr7.1:17141784-17141803 | MS.gene38786:CDS | 45.0% | |
| TAGACAACTTCCTCGCCTTA+GGG | - | chr7.1:17143028-17143047 | MS.gene38786:intron | 45.0% | |
| TCCCTCGGAAACTTCTTTAC+CGG | - | chr7.1:17141799-17141818 | MS.gene38786:CDS | 45.0% | |
| TCTACTAAGCCAATCCAGCT+GGG | + | chr7.1:17143731-17143750 | None:intergenic | 45.0% | |
| TTAATGTAGGAGTAGGACGG+TGG | - | chr7.1:17142819-17142838 | MS.gene38786:intron | 45.0% | |
| TTAGACAACTTCCTCGCCTT+AGG | - | chr7.1:17143027-17143046 | MS.gene38786:intron | 45.0% | |
| TTCTACTAAGCCAATCCAGC+TGG | + | chr7.1:17143732-17143751 | None:intergenic | 45.0% | |
| ! | ACAGGGCTACTGATTATCCT+AGG | - | chr7.1:17143250-17143269 | MS.gene38786:intron | 45.0% |
| ! | AGATCAGCCTGAGATGCTTT+TGG | - | chr7.1:17142997-17143016 | MS.gene38786:intron | 45.0% |
| !! | ATTCACGCCAAAAGCATCTC+AGG | + | chr7.1:17143007-17143026 | None:intergenic | 45.0% |
| !! | TCTTGCTGTTGGGTACTACA+GGG | - | chr7.1:17143233-17143252 | MS.gene38786:intron | 45.0% |
| !! | TTCTTGCTGTTGGGTACTAC+AGG | - | chr7.1:17143232-17143251 | MS.gene38786:intron | 45.0% |
| AACATGCTAGGTCTGCGAGT+AGG | - | chr7.1:17143751-17143770 | MS.gene38786:intron | 50.0% | |
| AGTCTGCTTTGCATCGTTGG+AGG | + | chr7.1:17142936-17142955 | None:intergenic | 50.0% | |
| CAGGTGCAATCTGCAAGGAT+AGG | + | chr7.1:17144404-17144423 | None:intergenic | 50.0% | |
| CCAATCAGGTGCAATCTGCA+AGG | + | chr7.1:17144409-17144428 | None:intergenic | 50.0% | |
| CCTTGCAGATTGCACCTGAT+TGG | - | chr7.1:17144406-17144425 | MS.gene38786:intron | 50.0% | |
| CGAAAGCAGGAGGATACATG+TGG | - | chr7.1:17143894-17143913 | MS.gene38786:intron | 50.0% | |
| CTCGGAAACTTCTTTACCGG+CGG | - | chr7.1:17141802-17141821 | MS.gene38786:CDS | 50.0% | |
| GCCGGTAAAGAAGTTTCCGA+GGG | + | chr7.1:17141803-17141822 | None:intergenic | 50.0% | |
| TGCAGATTGCACCTGATTGG+AGG | - | chr7.1:17144409-17144428 | MS.gene38786:intron | 50.0% | |
| TTTCGAGCATGGCAATCCCA+CGG | + | chr7.1:17142331-17142350 | None:intergenic | 50.0% | |
| ! | ACAGCTGCAGGGCTTTTAGT+TGG | - | chr7.1:17144573-17144592 | MS.gene38786:CDS | 50.0% |
| ! | CCAGTCTAGAGTCAACACAG+TGG | + | chr7.1:17143477-17143496 | None:intergenic | 50.0% |
| ! | GGATGCTTTTGTTGGGCGTT+GGG | - | chr7.1:17143571-17143590 | MS.gene38786:intron | 50.0% |
| ! | TGGATGCTTTTGTTGGGCGT+TGG | - | chr7.1:17143570-17143589 | MS.gene38786:intron | 50.0% |
| !! | CCACTGTGTTGACTCTAGAC+TGG | - | chr7.1:17143474-17143493 | MS.gene38786:intron | 50.0% |
| !! | GCAGCTTCTGGAGCAATGTT+TGG | - | chr7.1:17143278-17143297 | MS.gene38786:intron | 50.0% |
| !! | GCTTCTGGAGCAATGTTTGG+AGG | - | chr7.1:17143281-17143300 | MS.gene38786:intron | 50.0% |
| !! | TGGTGTCATTGCTGCAGCAT+TGG | - | chr7.1:17144593-17144612 | MS.gene38786:CDS | 50.0% |
| ATGACATCACGGTCGCACCA+AGG | + | chr7.1:17141838-17141857 | None:intergenic | 55.0% | |
| CAATGACCCCAGAGCCACTT+CGG | + | chr7.1:17142770-17142789 | None:intergenic | 55.0% | |
| CCTTCAAAACGCCACCGAAG+TGG | - | chr7.1:17142753-17142772 | MS.gene38786:intron | 55.0% | |
| CGCCGGTAAAGAAGTTTCCG+AGG | + | chr7.1:17141804-17141823 | None:intergenic | 55.0% | |
| GACAATGCCTGCCTCCAATC+AGG | + | chr7.1:17144423-17144442 | None:intergenic | 55.0% | |
| GATTGCACCTGATTGGAGGC+AGG | - | chr7.1:17144413-17144432 | MS.gene38786:intron | 55.0% | |
| GCATCACTGCAACAGCTGCA+GGG | - | chr7.1:17144562-17144581 | MS.gene38786:CDS | 55.0% | |
| GGCTTGTGTGCTCATGCAGA+TGG | - | chr7.1:17144525-17144544 | MS.gene38786:intron | 55.0% | |
| TGACATCACGGTCGCACCAA+GGG | + | chr7.1:17141837-17141856 | None:intergenic | 55.0% | |
| ! | CCACTTCGGTGGCGTTTTGA+AGG | + | chr7.1:17142756-17142775 | None:intergenic | 55.0% |
| AAACGCCACCGAAGTGGCTC+TGG | - | chr7.1:17142759-17142778 | MS.gene38786:intron | 60.0% | |
| AACGCCACCGAAGTGGCTCT+GGG | - | chr7.1:17142760-17142779 | MS.gene38786:intron | 60.0% | |
| CACGAAAGGAGGGACTGCAG+TGG | + | chr7.1:17143054-17143073 | None:intergenic | 60.0% | |
| GGCATCACTGCAACAGCTGC+AGG | - | chr7.1:17144561-17144580 | MS.gene38786:CDS | 60.0% | |
| TCCTAGGAGTCGGCAGCTTC+TGG | - | chr7.1:17143266-17143285 | MS.gene38786:intron | 60.0% | |
| !! | TCCAGAAGCTGCCGACTCCT+AGG | + | chr7.1:17143270-17143289 | None:intergenic | 60.0% |
| ACTGCAGTGGCCCTAAGGCG+AGG | + | chr7.1:17143041-17143060 | None:intergenic | 65.0% | |
| CCAAGGGATCTGATCGCCGC+CGG | + | chr7.1:17141821-17141840 | None:intergenic | 65.0% | |
| GAGGGACTGCAGTGGCCCTA+AGG | + | chr7.1:17143046-17143065 | None:intergenic | 65.0% | |
| TGACCCCAGAGCCACTTCGG+TGG | + | chr7.1:17142767-17142786 | None:intergenic | 65.0% | |
| ! | ACGCCACCGAAGTGGCTCTG+GGG | - | chr7.1:17142761-17142780 | MS.gene38786:intron | 65.0% |
| CCGGCGGCGATCAGATCCCT+TGG | - | chr7.1:17141818-17141837 | MS.gene38786:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 17141769 | 17144629 | 17141769 | ID=MS.gene38786 |
| chr7.1 | mRNA | 17141769 | 17144629 | 17141769 | ID=MS.gene38786.t1;Parent=MS.gene38786 |
| chr7.1 | exon | 17144537 | 17144629 | 17144537 | ID=MS.gene38786.t1.exon1;Parent=MS.gene38786.t1 |
| chr7.1 | CDS | 17144537 | 17144629 | 17144537 | ID=cds.MS.gene38786.t1;Parent=MS.gene38786.t1 |
| chr7.1 | exon | 17144048 | 17144186 | 17144048 | ID=MS.gene38786.t1.exon2;Parent=MS.gene38786.t1 |
| chr7.1 | CDS | 17144048 | 17144186 | 17144048 | ID=cds.MS.gene38786.t1;Parent=MS.gene38786.t1 |
| chr7.1 | exon | 17143096 | 17143217 | 17143096 | ID=MS.gene38786.t1.exon3;Parent=MS.gene38786.t1 |
| chr7.1 | CDS | 17143096 | 17143217 | 17143096 | ID=cds.MS.gene38786.t1;Parent=MS.gene38786.t1 |
| chr7.1 | exon | 17141921 | 17141984 | 17141921 | ID=MS.gene38786.t1.exon4;Parent=MS.gene38786.t1 |
| chr7.1 | CDS | 17141921 | 17141984 | 17141921 | ID=cds.MS.gene38786.t1;Parent=MS.gene38786.t1 |
| chr7.1 | exon | 17141769 | 17141854 | 17141769 | ID=MS.gene38786.t1.exon5;Parent=MS.gene38786.t1 |
| chr7.1 | CDS | 17141769 | 17141854 | 17141769 | ID=cds.MS.gene38786.t1;Parent=MS.gene38786.t1 |
| Gene Sequence |
| Protein sequence |
