AlfalfaGEDB | MS.gene39404

M. sativa cultivar XinJiangDaYe / MS.gene39404

KEGG: K01082
GO: GO:0003674 GO:0003824 GO:0006629 GO:0006644 GO:0006650 GO:0006790 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008252 GO:0008441 GO:0009987 GO:0016310 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0030258 GO:0042578 GO:0044237 GO:0044238 GO:0044255 GO:0046486 GO:0046488 GO:0046834 GO:0046854 GO:0071704
PFAM: PF00459.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39404.t1	XP_013457105.1	93.2	454	27	2	1	454	1	450	4.80E-240	840.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39404.t1	Q38945	54.6	377	152	6	85	454	9	373	3.6e-103	376.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39404.t1	A0A072UP28	93.2	454	27	2	1	454	1	450	3.5e-240	840.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene39404	0.805568	1.25E-49	-1.69E-46
MS.gene04918	MS.gene39404	0.827055	1.93E-54	-1.69E-46
MS.gene04920	MS.gene39404	0.807891	4.05E-50	-1.69E-46
MS.gene049254	MS.gene39404	0.843233	1.59E-58	-1.69E-46
MS.gene049283	MS.gene39404	0.819691	1.02E-52	-1.69E-46
MS.gene049499	MS.gene39404	0.830401	3.00E-55	-1.69E-46
MS.gene049711	MS.gene39404	0.804091	2.55E-49	-1.69E-46
MS.gene049983	MS.gene39404	0.80728	5.46E-50	-1.69E-46
MS.gene050559	MS.gene39404	0.803675	3.11E-49	-1.69E-46
MS.gene051279	MS.gene39404	0.81293	3.31E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39404.t1	MTR_4g090525	93.172	454	27	2	1	454	1	450	0.0	843
MS.gene39404.t1	MTR_2g012510	66.809	470	136	8	1	454	1	466	0.0	615
MS.gene39404.t1	MTR_8g464260	57.784	379	156	3	78	454	2	378	1.92e-154	443
MS.gene39404.t1	MTR_4g094672	34.797	296	161	7	133	426	1	266	1.78e-44	157
MS.gene39404.t1	MTR_2g011680	29.723	397	230	15	70	445	37	405	4.39e-31	124
MS.gene39404.t1	MTR_3g109970	60.000	60	23	1	129	187	6	65	1.66e-15	71.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39404.t1	AT5G54390	55.968	377	147	6	85	454	9	373	3.40e-135	394
MS.gene39404.t1	AT5G63980	38.275	371	199	9	82	450	3	345	1.17e-67	220
MS.gene39404.t1	AT5G09290	35.588	340	180	6	82	419	3	305	4.27e-60	200
MS.gene39404.t1	AT5G64000	36.578	339	184	6	82	418	3	312	5.69e-60	200
MS.gene39404.t1	AT5G63990	33.062	369	214	9	82	448	3	340	8.23e-55	186
MS.gene39404.t1	AT5G64000	36.986	292	155	6	127	418	7	269	5.74e-51	175
MS.gene39404.t1	AT5G63990	30.408	319	192	6	82	398	3	293	3.98e-43	154
MS.gene39404.t1	AT4G05090	30.130	385	216	14	81	448	45	393	1.10e-29	120

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Find 118 sgRNAs with CRISPR-Local

Find 245 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATATGGGATCATGCTGC+TGG	0.560447	4.2:+21624710	MS.gene39404:CDS
AAACTATTCTTCTCCCTTGA+TGG	0.310707	4.2:+21621669	MS.gene39404:CDS
AAAGGTTCATCATATTTAGA+AGG	0.326132	4.2:+21624800	MS.gene39404:CDS
AAATATGTGGCACTAGCTTG+TGG	0.599637	4.2:+21624641	MS.gene39404:CDS
AACTCAGTTGGGGTTCCTTC+CGG	0.426119	4.2:+21623206	MS.gene39404:CDS
AAGAACCACTCAAGCCACAT+TGG	0.597231	4.2:+21621625	MS.gene39404:CDS
AAGGTTCATCATATTTAGAA+GGG	0.514547	4.2:+21624801	MS.gene39404:CDS
AAGTCCTCTTGATGGCAAAA+TGG	0.254030	4.2:+21623244	MS.gene39404:CDS
AAGTGGTGGTTGGTGTTCTT+GGG	0.325198	4.2:+21623321	MS.gene39404:CDS
AATATGTGGCACTAGCTTGT+GGG	0.570610	4.2:+21624642	MS.gene39404:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATGTTTATTAACCGAGGT+TGG	+	chr4.2:21622734-21622753	MS.gene39404:intron	30.0%
AACATGGGAATAATCCAAAT+AGG	-	chr4.2:21623768-21623787	None:intergenic	30.0%
ACTGTATTAGCAATGATGAT+TGG	-	chr4.2:21624379-21624398	None:intergenic	30.0%
AGAGAAATATTCCCAAGAAT+TGG	+	chr4.2:21621729-21621748	MS.gene39404:CDS	30.0%
ATATATGTGGTATGTTTGCA+CGG	-	chr4.2:21621519-21621538	None:intergenic	30.0%
ATTGTCTAGTCCATATTGAT+CGG	+	chr4.2:21622331-21622350	MS.gene39404:intron	30.0%
ATTTATGCTAAGAAGGATAG+TGG	+	chr4.2:21623455-21623474	MS.gene39404:CDS	30.0%
CAGTTGACTAAAAAAAAGGA+AGG	+	chr4.2:21624098-21624117	MS.gene39404:intron	30.0%
CTGGTTACAAAGAGAAAATA+TGG	+	chr4.2:21624696-21624715	MS.gene39404:CDS	30.0%
GCTAACACACTTTAAATAAG+TGG	+	chr4.2:21622659-21622678	MS.gene39404:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	21621493	21624916	21621493	ID=MS.gene39404
chr4.2	mRNA	21621493	21624916	21621493	ID=MS.gene39404.t1;Parent=MS.gene39404
chr4.2	exon	21621493	21621859	21621493	ID=MS.gene39404.t1.exon1;Parent=MS.gene39404.t1
chr4.2	CDS	21621493	21621859	21621493	ID=cds.MS.gene39404.t1;Parent=MS.gene39404.t1
chr4.2	exon	21622970	21623660	21622970	ID=MS.gene39404.t1.exon2;Parent=MS.gene39404.t1
chr4.2	CDS	21622970	21623660	21622970	ID=cds.MS.gene39404.t1;Parent=MS.gene39404.t1
chr4.2	exon	21624610	21624916	21624610	ID=MS.gene39404.t1.exon3;Parent=MS.gene39404.t1
chr4.2	CDS	21624610	21624916	21624610	ID=cds.MS.gene39404.t1;Parent=MS.gene39404.t1

Gene Sequence

>MS.gene39404

ATGTCTTTATATTGTTCCATCATCCGTGCAAACATACCACATATATTGAAACATGGAAAGAGGAGTGACTACTTTACACTAAGCCATATAGAAGCAAAATCAAGTTCAAGCTTCTTGTCCTTCAATCATCATAAGAACCACTCAAGCCACATTGGTTTTGTGTCGAAATTCGAACAAAACTATTCTTCTCCCTTGATGGAGGAGGACAGACAAATGGTTGGTCTTGTTTCACAATCAGAGAAATATTCCCAAGAATTGGATGTTGCTGTCAGAGCAGTCCAGATGGCTTGCTCTCTATGTCAAAAAGTGCAAGAAACCTTGATTTCCAAGTCATCCAAGGATTGCAATTCTTCAGTCACAGTGGCAGGTGAATATTTCTAATTGTGAAAATTGTCATGTTTTGTTTGCATGTATTATTTTTGTTTTATTAAGCTAATGAGTTAAACTTTTATCTTAGCCATATATGGATTTATATGGAATTCTGAGTTGATTATTGTTTTAGATTGCAATAACTTTGGAGTAGAGTGTCTACTGTCCTGTAAGAATTGGATGTTGCTGTCAAACACAACTTCTACCACTTGTGCCAAGTTGCTTTGGTATCCAGTCAAATTATGACAAGTGGCTTCTTGGATTTATTATGAAGTGACAAAAGAGGAAGACAAACATTTTCTGATACAAACAGGATCTAATGATCAAAATGAATACTTATACTCTAAAATCTGTAAAGTCAATGAAAAACTGTTTGGCAAGAAAAGTGACTGTTATATAAAGGCTTCAGAGGTCTTAAAAACAAAATTTTGATGGTAAAATGGAAAATGATAAAGACTTGGTATTATAGATTGTCTAGTCCATATTGATCGGTACGAGAAGCTTGATAGAGTATTTAAGTTTGGTCATATGAACGCTTGTGCATCGGTAAAGTTGTTGTCCCGTGACTGAAAAAGTCGCGGGTTTAAGTCCTGGAAACAATATATTGTGTAAAAAACAAGGTAAAGCTGCGTACAATACACCAAAATAGTGGGACCCTTTCCCGAATCCTGTGTATGTGGAAGCACCGAACTGCCTTTTTTATTTTTTTTATATATGAATGCTTACGCATATTATACTTATATGTTGTGTTATTTAAACAAGTAAAATTTAACAACTTTGCTACAACGATTTAAGTGGCTAACACACTTTAAATAAGTGGTTAATTACATTCGGTATATGCTTCATTAACCGAGGTTGGTCTTTTTGTAGGCAAATGTTTATTAACCGAGGTTGGTCTTTTTGTAGGCAAATGTTTATGTTAGTTTCCAAGGTTTAAATCCTAGACCTCGTGCTTAAAACTCTTTCGGTGTCTCTTAGCTCACCAACCGAGCTACTACTAGGAACATCTACTGATCAGTCTATTGGTGAATTTGATAAATTTATATTCATACTTACAATTAACTGAAATTGAATTGCACTGTACTTTGTCAATATGCTAAATATATAGGTTGGAGTGTCAAAGCAATTGTGAGCTGGATATTATCTGAATGTTTAAGGGGTGACAATATCTCTATTCTAGCTGAAGAGGAGGTTCAGACTCTCTCCAACACTAATGCATCTGAACTGCTAGAAACTGTAGTAAAAATTGTGAATGAATGTCTATCTGAAGCACCTTTATTTGGAGCTGAAGCACCAAAATCACCTCTTGGAACTTCAGAGGTTCTTGAAATCATTAGTCACTTCAACTCAGTTGGGGTTCCTTCCGGAAGATTTTGGGCACTAAGTCCTCTTGATGGCAAAATGGGATTTGTAAATGGTGATCAATATGCTGTAGCTTTATCACTCATAGAGGATGGAGAAGTGGTGGTTGGTGTTCTTGGGTGTCCTAACTACCCTATGAGAAAGGACTGGCTTGGTTATCAGCAAAGTTATCATAGGATTATGTCCAAGTTGATTCCTCCAACATCTGAAACTTGGAACAAAGGTTGTGTAATTTATGCTAAGAAGGATAGTGGCAAGGCTTGGATCCAACCACTGATCCATCATGCCAATAAGAAGTTTGTGTGGCCAAACCATGCAAAACAAGTATCTCTGTCTTCTGTTGACAACCTAGGATTGGCCACTTTGTGCCAAACAGTTGAGAAGGCTAATTCAAGTCACTCCTTTACTGATGGACTGGCTCATAGTGTTGGTTTCAGGTTCATTTCTATTTCATTCTTTTTTTATGTCAGTTATCCTTCCTGTCTTTTGATATTTATCTTGTGGGGTTGTGGGTTTTTAAACATTCCAACATGGGGTTATTCCTATTTGGATTATTCCCATGTTTTCTATTTGTTTAGTCAATAAGGTTTTAGATTCCAGTTGCCTTACGATCCTTGATACTGTCGAGAATTGCAATCAAATACGACCTTAATCGTGGTCGCAGAGACTTGAAAAACTTTGATATTGCGGTTCAGATTGTGGCCGCAAAGCTTTATCACTTAATTATATAATATGCAGACAAGTTCTACGGTGGACCACTTAGACTGGTACTTGAAAATCATTTGAAACTTCAATGGGACATATGTTGTCTTACGGAAGTAAAAGCTCACGGTCCTCCACGTTTTCATGGTTGAGACAGTGACTTGAACTGTGTCAGTTGACTAAAAAAAAGGAAGGAAAAGGAATATGTGTCTAAAAACTTAACTCATATTTGTTTTTCCTTATTTTTATCGAACTTACACTGATCATGCCATCTTCTCAGTCGTATGGACGAGGGGGACTGCAAGCTTCTACTTCCAAAGGTCGTCGCAAATCATTGTTACAGTTTCAACTAATTGTTCAATACTAATCCACCGTGGACCACCTATCAAAGTTGTTTACCGCATAACCTACGGCTACCATGACACGCATATTAAAACTCTTGAGAAATATCCAATCATCATTGCTAATACAGTACTATAAGGATGAAAAGTTTCTTAGTAAGATTGCAATCTGAAATTTGTGTTGTACAGATGCACTCTCTTTACTTAATGACTAATCACACACGTTTATTTCAGTAGTACTTAAAATATCACTTGTAAAAAGGCACAAAAAATAATATAGATCCTATAAGAGAATAATAGTTTTTACTTTACAAGAAAGCTCATATTCATAATCTGTATGCAGCAATAAACCATTAGGAGTTAAGAGCATGATGAAATATGTGGCACTAGCTTGTGGGGATGCAGAGGTGTTTATGAAGTTTGCAAGGACTGGTTACAAAGAGAAAATATGGGATCATGCTGCTGGTTTCATCATCATACAAGAGGCAGGAGGCACAGTAACAGATGCTAGGGGCAGTTCCTTGGATTTCTCTAAAGGTTCATCATATTTAGAAGGGATTGATCGTGGTATAGTTGCTTGTGCTGGAGCCACATTACATGAAAAGATCATAGATGCTGTTGATGCTAGTTGGGCCTCTTCTAGCCTTTGA

Protein sequence

>MS.gene39404.t1

MSLYCSIIRANIPHILKHGKRSDYFTLSHIEAKSSSSFLSFNHHKNHSSHIGFVSKFEQNYSSPLMEEDRQMVGLVSQSEKYSQELDVAVRAVQMACSLCQKVQETLISKSSKDCNSSVTVAGWSVKAIVSWILSECLRGDNISILAEEEVQTLSNTNASELLETVVKIVNECLSEAPLFGAEAPKSPLGTSEVLEIISHFNSVGVPSGRFWALSPLDGKMGFVNGDQYAVALSLIEDGEVVVGVLGCPNYPMRKDWLGYQQSYHRIMSKLIPPTSETWNKGCVIYAKKDSGKAWIQPLIHHANKKFVWPNHAKQVSLSSVDNLGLATLCQTVEKANSSHSFTDGLAHSVGFSNKPLGVKSMMKYVALACGDAEVFMKFARTGYKEKIWDHAAGFIIIQEAGGTVTDARGSSLDFSKGSSYLEGIDRGIVACAGATLHEKIIDAVDASWASSSL