AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene39446

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene39446.t1 MTR_4g088920 94.962 913 46 0 1 913 1 913 0.0 1804
MS.gene39446.t1 MTR_5g068600 30.625 800 467 22 33 789 43 797 2.71e-85 291
MS.gene39446.t1 MTR_5g068600 31.009 674 387 18 151 789 67 697 1.10e-76 265
MS.gene39446.t1 MTR_1g045670 30.049 203 130 3 414 605 743 944 1.09e-17 89.0
MS.gene39446.t1 MTR_1g100683 33.858 127 82 2 428 553 799 924 6.18e-15 80.1
MS.gene39446.t1 MTR_1g100683 33.858 127 82 2 428 553 799 924 6.18e-15 80.1
MS.gene39446.t1 MTR_7g109470 25.763 295 169 10 403 665 1003 1279 8.34e-15 79.7
MS.gene39446.t1 MTR_6g086270 26.230 244 148 7 413 630 878 1115 1.87e-13 75.1
MS.gene39446.t1 MTR_4g111945 22.261 283 187 7 414 664 649 930 4.66e-13 73.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene39446.t1 AT1G65070 53.863 893 349 12 28 913 40 876 0.0 907
MS.gene39446.t1 AT1G65070 53.829 875 341 12 28 895 40 858 0.0 883
MS.gene39446.t1 AT1G65070 55.440 772 292 8 28 794 40 764 0.0 819
MS.gene39446.t1 AT1G65070 57.120 632 222 7 28 655 40 626 0.0 694
MS.gene39446.t1 AT5G54090 30.198 808 470 24 20 784 34 790 4.93e-82 282
MS.gene39446.t1 AT3G24320 27.723 202 134 3 415 605 498 698 5.16e-17 86.7
MS.gene39446.t1 AT3G24320 27.723 202 134 3 415 605 743 943 7.26e-17 86.3
MS.gene39446.t1 AT4G25540 32.624 141 92 3 414 552 799 938 1.02e-14 79.3
MS.gene39446.t1 AT4G02070 24.167 360 204 12 203 550 897 1199 1.95e-12 72.0
MS.gene39446.t1 AT4G02070 24.167 360 204 12 203 550 900 1202 2.02e-12 72.0
MS.gene39446.t1 AT3G24495 26.577 222 141 6 412 612 826 1046 4.32e-12 70.9
MS.gene39446.t1 AT4G17380 29.231 130 91 1 423 552 545 673 5.09e-12 70.5
MS.gene39446.t1 AT4G17380 24.066 241 154 7 423 657 545 762 5.13e-12 70.5
MS.gene39446.t1 AT3G18524 29.252 147 99 4 414 557 648 792 7.40e-12 70.1

Find 221 sgRNAs with CRISPR-Local

Find 392 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATAATTCATTGGACTTTC+TGG 0.056329 4.2:-22128811 None:intergenic
ATTCTCTCCGTTGCCGTTTC+TGG 0.168849 4.2:+22124122 MS.gene39446:CDS
CTCTGGAGCAACATACTTTA+TGG 0.200265 4.2:+22125383 MS.gene39446:CDS
CTCCGCTCTTGCTGCTGTTC+TGG 0.212629 4.2:-22126648 None:intergenic
AAACCTTGCAACCAACTTAT+AGG 0.224407 4.2:+22126517 MS.gene39446:CDS
GCAAAATTGTAATTTCCTAA+TGG 0.255352 4.2:+22125092 MS.gene39446:CDS
CGAAAAGCAACTAAAAGATT+TGG 0.258652 4.2:+22127352 MS.gene39446:CDS
ACATCATATACTCCACAATT+TGG 0.262844 4.2:+22127485 MS.gene39446:CDS
CTTGTTCTCATTGATGAAAT+TGG 0.280062 4.2:+22126330 MS.gene39446:CDS
CCAGAAAGTCCAATGAATTA+TGG 0.282003 4.2:+22128811 MS.gene39446:CDS
TTGCATAGATTGCAATCTTT+TGG 0.292449 4.2:+22125137 MS.gene39446:CDS
CTAGAATGTGCGTGGGCATC+AGG 0.296994 4.2:+22125310 MS.gene39446:CDS
AGAGTACCTAAACTGAAAAT+TGG 0.301495 4.2:-22125609 None:intergenic
GAAACAATCTTGGTACAGTA+TGG 0.305012 4.2:+22127575 MS.gene39446:CDS
AGCAATGGTGATATTTATTA+TGG 0.313667 4.2:+22128589 MS.gene39446:CDS
CAAAATTGTAATTTCCTAAT+GGG 0.314744 4.2:+22125093 MS.gene39446:CDS
TTGCATCTTCTAACTCTTGT+TGG 0.316694 4.2:-22127298 None:intergenic
TTCAAATCTATTGCTTCTTT+CGG 0.318025 4.2:-22125408 None:intergenic
AGGTCAAACCAAGGAAGTTT+TGG 0.325111 4.2:-22126002 None:intergenic
AACCTTGCAACCAACTTATA+GGG 0.326348 4.2:+22126518 MS.gene39446:CDS
TCATTAGATCAGAACGAAAA+AGG 0.327607 4.2:+22125193 MS.gene39446:CDS
AGGTTTGATCGAGAAGCTTT+TGG 0.334460 4.2:-22124037 None:intergenic
AGGGATTGAGGGTTTGTTGA+TGG 0.339868 4.2:-22123832 None:intergenic
TTCTTAGATGTTTGCACCGC+TGG 0.347990 4.2:-22128613 None:intergenic
GATCGACGCTTAGTAATAAA+TGG 0.355822 4.2:-22125288 None:intergenic
GAGTACGTCCGACGGGTAAA+CGG 0.367625 4.2:-22124004 None:intergenic
CTTGGCAGGCAGATGCATTC+CGG 0.370541 4.2:-22125973 None:intergenic
GGGATTGAGGGTTTGTTGAT+GGG 0.370731 4.2:-22123831 None:intergenic
GAAAAGCAACTAAAAGATTT+GGG 0.371137 4.2:+22127353 MS.gene39446:CDS
AGCATTCACTTCCACTTCAA+TGG 0.372505 4.2:+22123959 MS.gene39446:CDS
ATCAGAGATAAAATATTTGT+TGG 0.373046 4.2:+22125518 MS.gene39446:CDS
AAGGAGAAGCGAGGGATTGA+GGG 0.374390 4.2:-22123843 None:intergenic
ACGGGCGTTGTTGGCGGCGG+AGG 0.376941 4.2:-22123985 None:intergenic
TCTGAGTTGGGTAATGGAAA+TGG 0.381561 4.2:+22125786 MS.gene39446:CDS
ATTACAAAGAGAACTGAATA+TGG 0.386756 4.2:-22128709 None:intergenic
AACTAGTTCTCCCACTCATC+AGG 0.387558 4.2:+22127664 MS.gene39446:CDS
CAAGGTCTTCTGCCTCCCTT+TGG 0.387704 4.2:-22127232 None:intergenic
GTTCTGAATGCCAGCAGCTC+TGG 0.388227 4.2:+22125366 MS.gene39446:CDS
AACCAACTTATAGGGTTCTC+TGG 0.388468 4.2:+22126526 MS.gene39446:CDS
GTAATACATGGGATGGGCAC+TGG 0.389103 4.2:+22128727 MS.gene39446:CDS
TTGTAATTTCCTAATGGGCT+TGG 0.389277 4.2:+22125098 MS.gene39446:CDS
ATTCATAATTTCTGCATGAA+TGG 0.390132 4.2:-22126739 None:intergenic
TTAAGCATAGCGCAATCTAT+TGG 0.392431 4.2:+22126573 MS.gene39446:CDS
AATTCTTCTGAGTTGGGTAA+TGG 0.397648 4.2:+22125780 MS.gene39446:CDS
TCCTAATGGGCTTGGAGCGC+AGG 0.398236 4.2:+22125106 MS.gene39446:CDS
GAAGGAGAAGCGAGGGATTG+AGG 0.404110 4.2:-22123844 None:intergenic
AATGCTCTATCAGTCATTAC+AGG 0.405453 4.2:+22126674 MS.gene39446:CDS
CAAGTCCGTGTGAAGGGATT+GGG 0.412733 4.2:+22127512 MS.gene39446:CDS
GACGGGTAAACGGGCGTTGT+TGG 0.416611 4.2:-22123994 None:intergenic
GTCATCTCAGGACCTAATAC+TGG 0.416951 4.2:+22125897 MS.gene39446:CDS
GTTGACTTCAAAATTAGATC+TGG 0.420665 4.2:+22125861 MS.gene39446:CDS
CTCCAACATCCGCAAGGATA+AGG 0.424491 4.2:-22126022 None:intergenic
TGCTGATCTAAGTACTTTGA+AGG 0.425952 4.2:+22126449 MS.gene39446:CDS
TCAGTTCTCTTTGTAATACA+TGG 0.427691 4.2:+22128715 MS.gene39446:CDS
ATTTGAACAACATGGAAGTT+AGG 0.428354 4.2:+22125424 MS.gene39446:CDS
ACTAGAGTGGTGGTCATCTC+AGG 0.432380 4.2:+22125885 MS.gene39446:CDS
TAATACATGGGATGGGCACT+GGG 0.432402 4.2:+22128728 MS.gene39446:CDS
GTCTGGAAATTCTTCTGAGT+TGG 0.433211 4.2:+22125773 MS.gene39446:CDS
GTAGCAGAAGCAAGGTTTGA+AGG 0.434423 4.2:-22123862 None:intergenic
CTTCGAACGGTGCAAAGCTC+GGG 0.437748 4.2:-22124161 None:intergenic
GCATTCAGAACTATACCTTC+TGG 0.438902 4.2:-22125354 None:intergenic
TCCTGCGCTCCAAGCCCATT+AGG 0.439036 4.2:-22125107 None:intergenic
GAAGAACACTCGCTGCTGCC+AGG 0.439097 4.2:+22124180 MS.gene39446:CDS
TCTGGAAATTCTTCTGAGTT+GGG 0.439306 4.2:+22125774 MS.gene39446:CDS
GCCTATGCTCAATGGATGAA+TGG 0.441853 4.2:+22125579 MS.gene39446:CDS
GCAAGTCCGTGTGAAGGGAT+TGG 0.444020 4.2:+22127511 MS.gene39446:CDS
TGAGTGGGAGAACTAGTTGC+AGG 0.444981 4.2:-22127659 None:intergenic
TGCTGAGAGTTGCTTGCATA+TGG 0.449310 4.2:-22123940 None:intergenic
CCTATGCTCAATGGATGAAT+GGG 0.451608 4.2:+22125580 MS.gene39446:CDS
ACAGTACATCCATAATTCAT+TGG 0.451719 4.2:-22128820 None:intergenic
AATCCTGGACTCTTTATTGA+AGG 0.452545 4.2:+22125224 MS.gene39446:CDS
TATGGCAAAGGAAGCTCAAC+GGG 0.452879 4.2:+22127274 MS.gene39446:CDS
GATAATATCACACTAAGGTC+TGG 0.454113 4.2:+22125756 MS.gene39446:CDS
AGAGAAGTCCAAAACTTCCT+TGG 0.454680 4.2:+22125994 MS.gene39446:CDS
GCATTCACTTCCACTTCAAT+GGG 0.457389 4.2:+22123960 MS.gene39446:CDS
TAGACGTGAAACGATGCTTA+TGG 0.459950 4.2:+22127256 MS.gene39446:CDS
GATGGGGATGAAAAGGTTGC+AGG 0.463561 4.2:-22123814 None:intergenic
CTTTAATTATTGAATTGAGT+TGG 0.464631 4.2:-22127382 None:intergenic
GTTAAAGGCTCAAGCTGAAA+AGG 0.465641 4.2:+22126710 MS.gene39446:CDS
TTCAAACTCTGAAGCGGCCG+AGG 0.466077 4.2:+22125449 MS.gene39446:CDS
ACCAACTTATAGGGTTCTCT+GGG 0.467907 4.2:+22126527 MS.gene39446:CDS
AGAAGATGCAAAATCTCAAA+TGG 0.468127 4.2:+22127310 MS.gene39446:CDS
TTCAATGAAAACGTTGGGCC+TGG 0.468162 4.2:+22125932 MS.gene39446:CDS
GTTTGTTGATGGGGATGAAA+AGG 0.469897 4.2:-22123821 None:intergenic
GGATTGAGGGTTTGTTGATG+GGG 0.474954 4.2:-22123830 None:intergenic
GCAGGATTCTTTGCACTTGG+TGG 0.477236 4.2:-22127641 None:intergenic
AGTACGTCCGACGGGTAAAC+GGG 0.478043 4.2:-22124003 None:intergenic
CCGCAGATATTGTAAGATAC+TGG 0.478412 4.2:-22126391 None:intergenic
GTATGTTGCTCCAGAGCTGC+TGG 0.478675 4.2:-22125376 None:intergenic
GCCACAGTGGTAGAATTGCC+TGG 0.478854 4.2:+22127545 MS.gene39446:CDS
GGGTAAACGGGCGTTGTTGG+CGG 0.478868 4.2:-22123991 None:intergenic
CAATGACATTGCGGTCGTGC+AGG 0.479424 4.2:+22125659 MS.gene39446:CDS
CTCATTGATGAAATTGGTAG+TGG 0.480474 4.2:+22126336 MS.gene39446:CDS
TAAACGGGCGTTGTTGGCGG+CGG 0.480719 4.2:-22123988 None:intergenic
ATCTAAGTACTTTGAAGGAA+AGG 0.486923 4.2:+22126454 MS.gene39446:CDS
TCTAAGTACTTTGAAGGAAA+GGG 0.492540 4.2:+22126455 MS.gene39446:CDS
GACCTTATCCTTGCGGATGT+TGG 0.494270 4.2:+22126020 MS.gene39446:CDS
ACTGCTTCAATGAAAACGTT+GGG 0.494465 4.2:+22125927 MS.gene39446:CDS
CAAGAGCTGCCTATGCTCAA+TGG 0.496220 4.2:+22125571 MS.gene39446:CDS
TCTTCGAACGGTGCAAAGCT+CGG 0.496479 4.2:-22124162 None:intergenic
CGCTGATTGCCATCTCAAGA+TGG 0.497377 4.2:-22128678 None:intergenic
TTCAGTTTAGGTACTCTTGG+AGG 0.498097 4.2:+22125615 MS.gene39446:CDS
GTTGCAGGATTCTTTGCACT+TGG 0.499764 4.2:-22127644 None:intergenic
CTATTGTAGAAACCACTGAA+TGG 0.501864 4.2:+22128535 MS.gene39446:intron
GTTTGATAGTTTGAAACACT+TGG 0.502558 4.2:+22124208 MS.gene39446:CDS
AAAAGTCGAGTTGTTGTTGA+GGG 0.503575 4.2:-22124076 None:intergenic
AGTCAACAATCTACCAGAAA+CGG 0.504237 4.2:-22124135 None:intergenic
TTGTTGTTGAGGGACGAGTC+TGG 0.504857 4.2:-22124066 None:intergenic
CGATTTAACAGTAAATATTG+AGG 0.507073 4.2:+22125686 MS.gene39446:CDS
ACCTGCTTTCCCTGATGAGT+GGG 0.510949 4.2:-22127674 None:intergenic
TCTCTTTGTAATACATGGGA+TGG 0.512107 4.2:+22128720 MS.gene39446:CDS
TATGCGGCATCCATTACTCC+TGG 0.512692 4.2:+22125710 MS.gene39446:CDS
ACCACTGAATGGAAAATCCC+GGG 0.517125 4.2:+22128546 MS.gene39446:CDS
TTGAGGGACGAGTCTGGCAG+CGG 0.519681 4.2:-22124060 None:intergenic
TTTCCTTCAATAAAGAGTCC+AGG 0.522157 4.2:-22125227 None:intergenic
ATGCGATCAGCGCCACTGAT+GGG 0.523837 4.2:-22127461 None:intergenic
AACCCTATAAGTTGGTTGCA+AGG 0.524314 4.2:-22126520 None:intergenic
AGGGTTCTCTGGGGATGTAT+CGG 0.524805 4.2:+22126537 MS.gene39446:CDS
GCATCGTTTCACGTCTATCA+AGG 0.526470 4.2:-22127250 None:intergenic
CCACAGTGGTAGAATTGCCT+GGG 0.526487 4.2:+22127546 MS.gene39446:CDS
TCCCACTCATCAGGGAAAGC+AGG 0.529174 4.2:+22127673 MS.gene39446:CDS
GTTCTGATCTAATGATCTCC+AGG 0.531958 4.2:-22125185 None:intergenic
ACTCAAAATTGCTCTTTCCT+CGG 0.533024 4.2:-22125466 None:intergenic
AACCACTGAATGGAAAATCC+CGG 0.535658 4.2:+22128545 MS.gene39446:CDS
CAGTTCTCTTTGTAATACAT+GGG 0.538091 4.2:+22128716 MS.gene39446:CDS
TGGGCATCAGGGCTTCGTAT+AGG 0.539792 4.2:+22125322 MS.gene39446:CDS
CAAACTATCAAACAATTCCC+TGG 0.540992 4.2:-22124198 None:intergenic
TAATTGACCATGCACAAAAG+TGG 0.545555 4.2:+22126610 MS.gene39446:CDS
GGATTGGACTGAGTTGGACT+CGG 0.547239 4.2:-22123889 None:intergenic
GGAGAGCAAGTCCGTGTGAA+GGG 0.549755 4.2:+22127506 MS.gene39446:CDS
CCCCAGAGAACCCTATAAGT+TGG 0.550494 4.2:-22126528 None:intergenic
AAGGTTTGAAGGAGAAGCGA+GGG 0.550811 4.2:-22123851 None:intergenic
CGGACTTGCTCTCCAAATTG+TGG 0.554429 4.2:-22127497 None:intergenic
TGGGGATGATGAAACAATCT+TGG 0.554483 4.2:+22127565 MS.gene39446:CDS
GTTCATCTCTAAGTTACCCC+GGG 0.556248 4.2:-22128563 None:intergenic
TCTGCGGGAACATGTTAACT+TGG 0.556527 4.2:+22126407 MS.gene39446:CDS
AGAGACGACTCCAGGAGTAA+TGG 0.558135 4.2:-22125720 None:intergenic
AACCAGAACAGCAGCAAGAG+CGG 0.560885 4.2:+22126646 MS.gene39446:CDS
TATAGGTATTTACTTCCAGA+AGG 0.561083 4.2:+22125339 MS.gene39446:CDS
AAGAACACTCGCTGCTGCCA+GGG 0.563118 4.2:+22124181 MS.gene39446:CDS
GATTTAACAGTAAATATTGA+GGG 0.563255 4.2:+22125687 MS.gene39446:CDS
AGGTTGCAGGTGAGTTGCAT+CGG 0.564166 4.2:-22123801 None:intergenic
AAACAATCTTGGTACAGTAT+GGG 0.564392 4.2:+22127576 MS.gene39446:CDS
TGGTGTGGAGTACGTCCGAC+GGG 0.567335 4.2:-22124011 None:intergenic
TGATAGAGCAAGTGAAGACC+TGG 0.568238 4.2:+22125167 MS.gene39446:CDS
CTCTTTGTAATACATGGGAT+GGG 0.569356 4.2:+22128721 MS.gene39446:CDS
AGGTTGCAATTCTGTTGAAG+AGG 0.570911 4.2:+22125635 MS.gene39446:CDS
GCATCACTTATGTCAAAAGC+CGG 0.571118 4.2:+22125954 MS.gene39446:CDS
AACTGATCCTTCAGAAGGTG+TGG 0.571658 4.2:+22126359 MS.gene39446:CDS
CAGTATCTTACAATATCTGC+GGG 0.572845 4.2:+22126392 MS.gene39446:CDS
TGCGGATGTTGGAGATCACC+AGG 0.575124 4.2:+22126031 MS.gene39446:CDS
ATAGCCTCAAAACTCTCGAA+TGG 0.578502 4.2:+22123913 MS.gene39446:CDS
TTCCTCCCAATCCCTTCACA+CGG 0.581458 4.2:-22127517 None:intergenic
AGGGACGAGTCTGGCAGCGG+AGG 0.583391 4.2:-22124057 None:intergenic
AAGATTGTTTCATCATCCCC+AGG 0.584283 4.2:-22127563 None:intergenic
AACTGCTTCAATGAAAACGT+TGG 0.585712 4.2:+22125926 MS.gene39446:CDS
TGGAGAGCAAGTCCGTGTGA+AGG 0.586036 4.2:+22127505 MS.gene39446:CDS
TGAAACGATGCTTATGGCAA+AGG 0.587621 4.2:+22127262 MS.gene39446:CDS
TTAGAGATGAACAGCAGCAA+TGG 0.589819 4.2:+22128574 MS.gene39446:CDS
TTTGTTGGATAAAATTCTTG+AGG 0.589996 4.2:+22125533 MS.gene39446:CDS
TGTTCATCTCTAAGTTACCC+CGG 0.590270 4.2:-22128564 None:intergenic
GCTATCGGATTGGACTGAGT+TGG 0.590319 4.2:-22123895 None:intergenic
ACTAGTTCTCCCACTCATCA+GGG 0.590763 4.2:+22127665 MS.gene39446:CDS
AAATGGTCTGTCAATACCCC+CGG 0.593244 4.2:-22125271 None:intergenic
TACCTGCTTTCCCTGATGAG+TGG 0.594282 4.2:-22127675 None:intergenic
TAGAATGTGCGTGGGCATCA+GGG 0.594705 4.2:+22125311 MS.gene39446:CDS
GGCGGAGGAGCCCATTGAAG+TGG 0.595273 4.2:-22123970 None:intergenic
AATGCGATCAGCGCCACTGA+TGG 0.596091 4.2:-22127462 None:intergenic
GCGTCGATCTAGAATGTGCG+TGG 0.598379 4.2:+22125302 MS.gene39446:CDS
AATTGACCATGCACAAAAGT+GGG 0.600519 4.2:+22126611 MS.gene39446:CDS
TAGGCTTTCAAACTCTGAAG+CGG 0.601365 4.2:+22125443 MS.gene39446:CDS
GCTGTTGGTTCTCCCATCAG+TGG 0.602482 4.2:+22127449 MS.gene39446:CDS
ATCTCAGGACCTAATACTGG+AGG 0.603222 4.2:+22125900 MS.gene39446:CDS
GAAAGAGCCACACCTTCTGA+AGG 0.603440 4.2:-22126366 None:intergenic
TTTCAGATAATATCACACTA+AGG 0.605757 4.2:+22125751 MS.gene39446:CDS
GTGGTGTGGAGTACGTCCGA+CGG 0.607679 4.2:-22124012 None:intergenic
AGCTGCGATCCATCTTGAGA+TGG 0.610710 4.2:+22128669 MS.gene39446:CDS
CTGTATCTAATCATTCACAC+AGG 0.610846 4.2:+22124234 MS.gene39446:CDS
AGCAATAGATTTGAACAACA+TGG 0.612310 4.2:+22125416 MS.gene39446:CDS
GTCCGTGTGAAGGGATTGGG+AGG 0.612668 4.2:+22127515 MS.gene39446:CDS
CCAGTATCTTACAATATCTG+CGG 0.612724 4.2:+22126391 MS.gene39446:CDS
TCGGTTGAGTAGCAGAAGCA+AGG 0.613416 4.2:-22123870 None:intergenic
AAAGCTCATACTCCTGCTGT+TGG 0.614300 4.2:+22127434 MS.gene39446:CDS
AGCAGCGAGTGTTCTTCGAA+CGG 0.614458 4.2:-22124174 None:intergenic
GAAAAGTCGAGTTGTTGTTG+AGG 0.614697 4.2:-22124077 None:intergenic
GGATCTACGAGGTATGCGAC+TGG 0.616506 4.2:+22128642 MS.gene39446:CDS
GCTTCTAAAAGCGCGTCACA+AGG 0.619119 4.2:+22125816 MS.gene39446:CDS
AATTAGATCTGGAACTAGAG+TGG 0.621351 4.2:+22125872 MS.gene39446:CDS
AACAACGCCCGTTTACCCGT+CGG 0.621448 4.2:+22123996 MS.gene39446:CDS
CTGATGGGAGAACCAACAGC+AGG 0.622975 4.2:-22127446 None:intergenic
CCCATTCATCCATTGAGCAT+AGG 0.623957 4.2:-22125580 None:intergenic
CAGTAAATATTGAGGGTATG+CGG 0.626418 4.2:+22125694 MS.gene39446:CDS
TTATGGCAAAGGAAGCTCAA+CGG 0.627066 4.2:+22127273 MS.gene39446:CDS
TTGGTTTGACCTTATCCTTG+CGG 0.628002 4.2:+22126013 MS.gene39446:CDS
AGTGGAACTGATCCTTCAGA+AGG 0.631076 4.2:+22126354 MS.gene39446:CDS
CAAGGTTTGAAGGAGAAGCG+AGG 0.631968 4.2:-22123852 None:intergenic
CAATCTACCAGAAACGGCAA+CGG 0.640248 4.2:-22124129 None:intergenic
TTCCAGTGAAAATTCCATTG+CGG 0.649211 4.2:-22126496 None:intergenic
CGTCGATCTAGAATGTGCGT+GGG 0.653354 4.2:+22125303 MS.gene39446:CDS
TGACCATGCACAAAAGTGGG+TGG 0.654188 4.2:+22126614 MS.gene39446:CDS
GGGTAATGGAAATGGAACAA+TGG 0.655085 4.2:+22125794 MS.gene39446:CDS
GAACAGCAGCAAGAGCGGAG+AGG 0.655853 4.2:+22126651 MS.gene39446:CDS
GCAAACATCTAAGAATACTG+TGG 0.660918 4.2:+22128621 MS.gene39446:CDS
GGTGATCTCCAACATCCGCA+AGG 0.665192 4.2:-22126028 None:intergenic
GCTCTATCAGTCATTACAGG+AGG 0.665919 4.2:+22126677 MS.gene39446:CDS
TCTCAGGACCTAATACTGGA+GGG 0.667789 4.2:+22125901 MS.gene39446:CDS
TAGATCTGGAACTAGAGTGG+TGG 0.673809 4.2:+22125875 MS.gene39446:CDS
ACTTAGATCAGCATAATGAG+TGG 0.681388 4.2:-22126439 None:intergenic
CTATGCTCAATGGATGAATG+GGG 0.683732 4.2:+22125581 MS.gene39446:CDS
CACAGTGGTAGAATTGCCTG+GGG 0.691114 4.2:+22127547 MS.gene39446:CDS
TGATATTTATTATGGTCCAG+CGG 0.693969 4.2:+22128597 MS.gene39446:CDS
AATACATGGGATGGGCACTG+GGG 0.701367 4.2:+22128729 MS.gene39446:CDS
TGAAGAGGACAATGACATTG+CGG 0.707528 4.2:+22125650 MS.gene39446:CDS
AATTATGAATGTGTACTCTG+AGG 0.708731 4.2:+22126752 MS.gene39446:CDS
CCCAGGCAATTCTACCACTG+TGG 0.714085 4.2:-22127546 None:intergenic
GGGAGGAAAATTAGCCACAG+TGG 0.714859 4.2:+22127532 MS.gene39446:CDS
GCAAGGATAAGGTCAAACCA+AGG 0.728909 4.2:-22126011 None:intergenic
CCACTGAATGGAAAATCCCG+GGG 0.744139 4.2:+22128547 MS.gene39446:CDS
AAGAATACTGTGGATCTACG+AGG 0.748281 4.2:+22128631 MS.gene39446:CDS
GGTTCAAAATGAGTGACACG+AGG 0.753470 4.2:-22128790 None:intergenic
CCAACTTATAGGGTTCTCTG+GGG 0.797932 4.2:+22126528 MS.gene39446:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTAGAATTGATATATTT+TGG + chr4.2:22128086-22128105 MS.gene39446:intron 10.0%
!! AAATACCTTTCAATAAAATT+TGG - chr4.2:22128022-22128041 None:intergenic 15.0%
!! AATTTCAGATAAACTTTAAA+AGG - chr4.2:22126870-22126889 None:intergenic 15.0%
!! TATTTATTGAAAGAAGTTAT+TGG + chr4.2:22127986-22128005 MS.gene39446:intron 15.0%
!!! AAGGTATTTTATATTTAATC+TGG + chr4.2:22128033-22128052 MS.gene39446:intron 15.0%
!!! AATTTTGTCTAAATCAAATT+AGG - chr4.2:22128398-22128417 None:intergenic 15.0%
!!! ATTTCAGATAAACTTTAAAA+GGG - chr4.2:22126869-22126888 None:intergenic 15.0%
!!! GAATTGATTTTCTATAAAAT+TGG + chr4.2:22128364-22128383 MS.gene39446:intron 15.0%
!!! TTACTATTTTAGTAAGAATT+GGG + chr4.2:22128203-22128222 MS.gene39446:intron 15.0%
!! AAATAAAAGGAAACAGTTTA+TGG + chr4.2:22124454-22124473 MS.gene39446:intron 20.0%
!! AATAAAAGGAAACAGTTTAT+GGG + chr4.2:22124455-22124474 MS.gene39446:intron 20.0%
!! ATAATGATTGTCATACTATA+TGG - chr4.2:22126843-22126862 None:intergenic 20.0%
!! ATATTTAAATTAACAGCTCT+TGG - chr4.2:22127019-22127038 None:intergenic 20.0%
!! ATCAGAGATAAAATATTTGT+TGG + chr4.2:22125518-22125537 MS.gene39446:CDS 20.0%
!! CAAAATTGTAATTTCCTAAT+GGG + chr4.2:22125093-22125112 MS.gene39446:CDS 20.0%
!! CAATTTCCAAATATAATGTT+AGG - chr4.2:22128311-22128330 None:intergenic 20.0%
!! CTAACATTATATTTGGAAAT+TGG + chr4.2:22128309-22128328 MS.gene39446:intron 20.0%
!! CTTTAATTATTGAATTGAGT+TGG - chr4.2:22127385-22127404 None:intergenic 20.0%
!! GATTTAACAGTAAATATTGA+GGG + chr4.2:22125687-22125706 MS.gene39446:CDS 20.0%
!!! AAATATCGTCTCAAATTTTT+CGG + chr4.2:22125247-22125266 MS.gene39446:CDS 20.0%
!!! ATTTTTGTGAACTTTTACTT+TGG - chr4.2:22125018-22125037 None:intergenic 20.0%
!!! CATTTTTTCTTTTGAAGTAA+TGG + chr4.2:22128056-22128075 MS.gene39446:intron 20.0%
!!! CTTATTATATTTGAAACTAG+AGG - chr4.2:22127885-22127904 None:intergenic 20.0%
!!! GAAATCCAAATTTTATTGAA+AGG + chr4.2:22128014-22128033 MS.gene39446:intron 20.0%
!!! GTTACTATTTTAGTAAGAAT+TGG + chr4.2:22128202-22128221 MS.gene39446:intron 20.0%
!!! TACTATTTTAGTAAGAATTG+GGG + chr4.2:22128204-22128223 MS.gene39446:intron 20.0%
!!! TTTTACTTTGGATTTGTAAA+AGG - chr4.2:22125006-22125025 None:intergenic 20.0%
! AAAAAAGTTCAGATATTACC+TGG - chr4.2:22126052-22126071 None:intergenic 25.0%
! AAATAGTAACAAATACTCAC+CGG - chr4.2:22128192-22128211 None:intergenic 25.0%
! AACTGAATCAGATTATGAAA+AGG - chr4.2:22124828-22124847 None:intergenic 25.0%
! ACTTATTTGAGCTAATATAC+TGG - chr4.2:22124598-22124617 None:intergenic 25.0%
! AGCAATGGTGATATTTATTA+TGG + chr4.2:22128589-22128608 MS.gene39446:CDS 25.0%
! ATCCAAAAAAGTCTATGTTT+GGG - chr4.2:22128115-22128134 None:intergenic 25.0%
! ATTAATAGATATCCAATCCT+CGG + chr4.2:22126987-22127006 MS.gene39446:intron 25.0%
! ATTACAAAGAGAACTGAATA+TGG - chr4.2:22128712-22128731 None:intergenic 25.0%
! ATTCAATGTGCCTATATTAT+AGG - chr4.2:22128348-22128367 None:intergenic 25.0%
! ATTCATAATTTCTGCATGAA+TGG - chr4.2:22126742-22126761 None:intergenic 25.0%
! CGATTTAACAGTAAATATTG+AGG + chr4.2:22125686-22125705 MS.gene39446:CDS 25.0%
! GAAAAGCAACTAAAAGATTT+GGG + chr4.2:22127353-22127372 MS.gene39446:CDS 25.0%
! GCAAAATTGTAATTTCCTAA+TGG + chr4.2:22125092-22125111 MS.gene39446:CDS 25.0%
! GGTATTTATTACAGAAAAAC+AGG - chr4.2:22128283-22128302 None:intergenic 25.0%
! GTTGTTCTATCATGTAATTT+GGG + chr4.2:22128248-22128267 MS.gene39446:intron 25.0%
! TATCCAAAAAAGTCTATGTT+TGG - chr4.2:22128116-22128135 None:intergenic 25.0%
! TTAATATAGTTAACCTGTCA+AGG + chr4.2:22127741-22127760 MS.gene39446:intron 25.0%
! TTATTATAGTTTCTTCTCCT+TGG + chr4.2:22126816-22126835 MS.gene39446:intron 25.0%
! TTCAAATCTATTGCTTCTTT+CGG - chr4.2:22125411-22125430 None:intergenic 25.0%
! TTCAGATCATCCTATAATAT+AGG + chr4.2:22128335-22128354 MS.gene39446:intron 25.0%
! TTTCAGACATTTCTAATTGA+TGG + chr4.2:22124569-22124588 MS.gene39446:intron 25.0%
! TTTCAGATAATATCACACTA+AGG + chr4.2:22125751-22125770 MS.gene39446:CDS 25.0%
! TTTGTTGGATAAAATTCTTG+AGG + chr4.2:22125533-22125552 MS.gene39446:CDS 25.0%
!! AAAATCTCTCAACTTTTAGT+GGG + chr4.2:22126259-22126278 MS.gene39446:CDS 25.0%
!! AATATCGTCTCAAATTTTTC+GGG + chr4.2:22125248-22125267 MS.gene39446:CDS 25.0%
!! AATTTTGCAGTATTTCAAGA+AGG - chr4.2:22125080-22125099 None:intergenic 25.0%
!! ATTTTGCAGTATTTCAAGAA+GGG - chr4.2:22125079-22125098 None:intergenic 25.0%
!! GATCTTTGAAAAAGAAGAAA+AGG - chr4.2:22127213-22127232 None:intergenic 25.0%
!! GTATTTTTCTTGACAAAGTT+CGG + chr4.2:22124885-22124904 MS.gene39446:intron 25.0%
!! GTTTTTCTGTAATAAATACC+AGG + chr4.2:22128283-22128302 MS.gene39446:intron 25.0%
!! TAACGGCATTATGAAAATTT+TGG - chr4.2:22127058-22127077 None:intergenic 25.0%
!! TCAATAGTTTAAGACATGTT+TGG + chr4.2:22124284-22124303 MS.gene39446:intron 25.0%
!! TGATGCAATTGTTTTCAATT+AGG + chr4.2:22125046-22125065 MS.gene39446:intron 25.0%
!!! TTCTTTTTCAAAGATCCAAA+GGG + chr4.2:22127217-22127236 MS.gene39446:intron 25.0%
AAAAAGGAACATAGAAATCC+TGG + chr4.2:22125209-22125228 MS.gene39446:CDS 30.0%
AAACAATCTTGGTACAGTAT+GGG + chr4.2:22127576-22127595 MS.gene39446:CDS 30.0%
AATTATGAATGTGTACTCTG+AGG + chr4.2:22126752-22126771 MS.gene39446:CDS 30.0%
ACAGTACATCCATAATTCAT+TGG - chr4.2:22128823-22128842 None:intergenic 30.0%
ACATCATATACTCCACAATT+TGG + chr4.2:22127485-22127504 MS.gene39446:CDS 30.0%
AGAAATTCTCTAAGCAATCA+AGG - chr4.2:22124689-22124708 None:intergenic 30.0%
AGAAGATGCAAAATCTCAAA+TGG + chr4.2:22127310-22127329 MS.gene39446:CDS 30.0%
AGCAATAGATTTGAACAACA+TGG + chr4.2:22125416-22125435 MS.gene39446:CDS 30.0%
AGTAATCTTATCTAGTGAGT+TGG + chr4.2:22127820-22127839 MS.gene39446:intron 30.0%
ATTTGAACAACATGGAAGTT+AGG + chr4.2:22125424-22125443 MS.gene39446:CDS 30.0%
CAAATATAATGTTAGGAACC+TGG - chr4.2:22128304-22128323 None:intergenic 30.0%
CAGGTTCCTAACATTATATT+TGG + chr4.2:22128302-22128321 MS.gene39446:intron 30.0%
CAGTTCTCTTTGTAATACAT+GGG + chr4.2:22128716-22128735 MS.gene39446:CDS 30.0%
CATAATATCATGTCCCAATA+AGG + chr4.2:22124922-22124941 MS.gene39446:intron 30.0%
CATTACAGGAGGAAAAAAAT+CGG + chr4.2:22126688-22126707 MS.gene39446:CDS 30.0%
CGAAAAGCAACTAAAAGATT+TGG + chr4.2:22127352-22127371 MS.gene39446:CDS 30.0%
CGTTGTTCTATCATGTAATT+TGG + chr4.2:22128247-22128266 MS.gene39446:intron 30.0%
CTTGTTCTCATTGATGAAAT+TGG + chr4.2:22126330-22126349 MS.gene39446:CDS 30.0%
GGATTGGATATCTATTAATG+AGG - chr4.2:22126986-22127005 None:intergenic 30.0%
GTAATCTTATCTAGTGAGTT+GGG + chr4.2:22127821-22127840 MS.gene39446:intron 30.0%
TATAGGTATTTACTTCCAGA+AGG + chr4.2:22125339-22125358 MS.gene39446:CDS 30.0%
TCAGTTCTCTTTGTAATACA+TGG + chr4.2:22128715-22128734 MS.gene39446:CDS 30.0%
TCATTAGATCAGAACGAAAA+AGG + chr4.2:22125193-22125212 MS.gene39446:CDS 30.0%
TCCAAAAAAGTCTATGTTTG+GGG - chr4.2:22128114-22128133 None:intergenic 30.0%
TGATATTTATTATGGTCCAG+CGG + chr4.2:22128597-22128616 MS.gene39446:CDS 30.0%
TTAATAGATATCCAATCCTC+GGG + chr4.2:22126988-22127007 MS.gene39446:intron 30.0%
TTGCTTAGAGAATTTCTGTA+TGG + chr4.2:22124692-22124711 MS.gene39446:intron 30.0%
! AAGTTGAGAGATTTTGTTCA+AGG - chr4.2:22126254-22126273 None:intergenic 30.0%
! AGAGTACCTAAACTGAAAAT+TGG - chr4.2:22125612-22125631 None:intergenic 30.0%
! AGTTGAGAGATTTTGTTCAA+GGG - chr4.2:22126253-22126272 None:intergenic 30.0%
! ATCTAAGTACTTTGAAGGAA+AGG + chr4.2:22126454-22126473 MS.gene39446:CDS 30.0%
! ATGAAAATTTTGGATGGAAG+AGG - chr4.2:22127048-22127067 None:intergenic 30.0%
! ATTTTCAGTTTAGGTACTCT+TGG + chr4.2:22125612-22125631 MS.gene39446:CDS 30.0%
! CAAAATCTCTCAACTTTTAG+TGG + chr4.2:22126258-22126277 MS.gene39446:CDS 30.0%
! GGCATTATGAAAATTTTGGA+TGG - chr4.2:22127054-22127073 None:intergenic 30.0%
! GTATGTCCAATTTTCAGTTT+AGG + chr4.2:22125603-22125622 MS.gene39446:CDS 30.0%
! GTTGACTTCAAAATTAGATC+TGG + chr4.2:22125861-22125880 MS.gene39446:CDS 30.0%
! GTTTGATAGTTTGAAACACT+TGG + chr4.2:22124208-22124227 MS.gene39446:CDS 30.0%
! TCTAAGTACTTTGAAGGAAA+GGG + chr4.2:22126455-22126474 MS.gene39446:CDS 30.0%
! TTGCATAGATTGCAATCTTT+TGG + chr4.2:22125137-22125156 MS.gene39446:CDS 30.0%
! TTTCATAATGCCGTTATTTC+TGG + chr4.2:22127062-22127081 MS.gene39446:intron 30.0%
! TTTTGCAGTATTTCAAGAAG+GGG - chr4.2:22125078-22125097 None:intergenic 30.0%
! TTTTTGGATATGTCCAATAG+CGG + chr4.2:22128126-22128145 MS.gene39446:intron 30.0%
!! TTCATAATGCCGTTATTTCT+GGG + chr4.2:22127063-22127082 MS.gene39446:intron 30.0%
!!! ACACTCTTTTAAGACCTTAT+TGG - chr4.2:22124939-22124958 None:intergenic 30.0%
!!! CACTCTTTTAAGACCTTATT+GGG - chr4.2:22124938-22124957 None:intergenic 30.0%
!!! CTTCTTTTTCAAAGATCCAA+AGG + chr4.2:22127216-22127235 MS.gene39446:intron 30.0%
!!! GATCTAATTTTGAAGTCAAC+TGG - chr4.2:22125861-22125880 None:intergenic 30.0%
AAACCTTGCAACCAACTTAT+AGG + chr4.2:22126517-22126536 MS.gene39446:CDS 35.0%
AACCTTGCAACCAACTTATA+GGG + chr4.2:22126518-22126537 MS.gene39446:CDS 35.0%
AACTGCTTCAATGAAAACGT+TGG + chr4.2:22125926-22125945 MS.gene39446:CDS 35.0%
AATCCTGGACTCTTTATTGA+AGG + chr4.2:22125224-22125243 MS.gene39446:CDS 35.0%
AATGCTCTATCAGTCATTAC+AGG + chr4.2:22126674-22126693 MS.gene39446:CDS 35.0%
AATTGACCATGCACAAAAGT+GGG + chr4.2:22126611-22126630 MS.gene39446:CDS 35.0%
ACCAGAAAATCAAAGTGTGA+TGG + chr4.2:22126922-22126941 MS.gene39446:intron 35.0%
ACTACTACTTAGCGTATGTT+TGG - chr4.2:22124625-22124644 None:intergenic 35.0%
ACTCAAAATTGCTCTTTCCT+CGG - chr4.2:22125469-22125488 None:intergenic 35.0%
ACTGCTTCAATGAAAACGTT+GGG + chr4.2:22125927-22125946 MS.gene39446:CDS 35.0%
ACTTAGATCAGCATAATGAG+TGG - chr4.2:22126442-22126461 None:intergenic 35.0%
AGAAGAAAAGGAAAAGAGTG+AGG - chr4.2:22127201-22127220 None:intergenic 35.0%
AGTCAACAATCTACCAGAAA+CGG - chr4.2:22124138-22124157 None:intergenic 35.0%
CAAACTATCAAACAATTCCC+TGG - chr4.2:22124201-22124220 None:intergenic 35.0%
CAGTATCTTACAATATCTGC+GGG + chr4.2:22126392-22126411 MS.gene39446:CDS 35.0%
CCAGAAAGTCCAATGAATTA+TGG + chr4.2:22128811-22128830 MS.gene39446:CDS 35.0%
CCAGTATCTTACAATATCTG+CGG + chr4.2:22126391-22126410 MS.gene39446:CDS 35.0%
CCATAATTCATTGGACTTTC+TGG - chr4.2:22128814-22128833 None:intergenic 35.0%
CTATTGTAGAAACCACTGAA+TGG + chr4.2:22128535-22128554 MS.gene39446:intron 35.0%
CTCATTGATGAAATTGGTAG+TGG + chr4.2:22126336-22126355 MS.gene39446:CDS 35.0%
CTCTTTGTAATACATGGGAT+GGG + chr4.2:22128721-22128740 MS.gene39446:CDS 35.0%
CTGTATCTAATCATTCACAC+AGG + chr4.2:22124234-22124253 MS.gene39446:CDS 35.0%
GAAACAATCTTGGTACAGTA+TGG + chr4.2:22127575-22127594 MS.gene39446:CDS 35.0%
GAAGAAAAGGAAAAGAGTGA+GGG - chr4.2:22127200-22127219 None:intergenic 35.0%
GAGTATGTAAATAGCTAGAG+GGG + chr4.2:22128152-22128171 MS.gene39446:intron 35.0%
GATAATATCACACTAAGGTC+TGG + chr4.2:22125756-22125775 MS.gene39446:CDS 35.0%
GATCGACGCTTAGTAATAAA+TGG - chr4.2:22125291-22125310 None:intergenic 35.0%
GCAAACATCTAAGAATACTG+TGG + chr4.2:22128621-22128640 MS.gene39446:CDS 35.0%
GGAGGAAAAAAATCGGTTAA+AGG + chr4.2:22126695-22126714 MS.gene39446:CDS 35.0%
GGAGTATGTAAATAGCTAGA+GGG + chr4.2:22128151-22128170 MS.gene39446:intron 35.0%
GGATATCTATTAATGAGGCA+CGG - chr4.2:22126981-22127000 None:intergenic 35.0%
TAATAGATATCCAATCCTCG+GGG + chr4.2:22126989-22127008 MS.gene39446:intron 35.0%
TAATTGACCATGCACAAAAG+TGG + chr4.2:22126610-22126629 MS.gene39446:CDS 35.0%
TCTCTTTGTAATACATGGGA+TGG + chr4.2:22128720-22128739 MS.gene39446:CDS 35.0%
TCTGGAAATTCTTCTGAGTT+GGG + chr4.2:22125774-22125793 MS.gene39446:CDS 35.0%
TGCTGATCTAAGTACTTTGA+AGG + chr4.2:22126449-22126468 MS.gene39446:CDS 35.0%
TTAAGCATAGCGCAATCTAT+TGG + chr4.2:22126573-22126592 MS.gene39446:CDS 35.0%
TTCCAGTGAAAATTCCATTG+CGG - chr4.2:22126499-22126518 None:intergenic 35.0%
TTGCATCTTCTAACTCTTGT+TGG - chr4.2:22127301-22127320 None:intergenic 35.0%
TTGTCATACTATATGGACCA+AGG - chr4.2:22126836-22126855 None:intergenic 35.0%
TTTATTTCCATCATCTCTCG+AGG - chr4.2:22124441-22124460 None:intergenic 35.0%
TTTCCTTCAATAAAGAGTCC+AGG - chr4.2:22125230-22125249 None:intergenic 35.0%
! AAAAGTCGAGTTGTTGTTGA+GGG - chr4.2:22124079-22124098 None:intergenic 35.0%
! AATTAGATCTGGAACTAGAG+TGG + chr4.2:22125872-22125891 MS.gene39446:CDS 35.0%
! AATTCTTCTGAGTTGGGTAA+TGG + chr4.2:22125780-22125799 MS.gene39446:CDS 35.0%
! ACCATTTTCCCCAGAAATAA+CGG - chr4.2:22127075-22127094 None:intergenic 35.0%
! AGCAACGTTTTTGATGTCTA+TGG + chr4.2:22124757-22124776 MS.gene39446:intron 35.0%
! AGCAGCTTCTTTTATGCATT+TGG + chr4.2:22124852-22124871 MS.gene39446:intron 35.0%
! AGTATGAGCTTTTACAATGG+AGG - chr4.2:22127426-22127445 None:intergenic 35.0%
! CAGTAAATATTGAGGGTATG+CGG + chr4.2:22125694-22125713 MS.gene39446:CDS 35.0%
! CTAATTGCACTTGTGCTTTT+GGG + chr4.2:22124969-22124988 MS.gene39446:intron 35.0%
! GCAACGTTTTTGATGTCTAT+GGG + chr4.2:22124758-22124777 MS.gene39446:intron 35.0%
! GCAGCTTCTTTTATGCATTT+GGG + chr4.2:22124853-22124872 MS.gene39446:intron 35.0%
! TCTAATTGCACTTGTGCTTT+TGG + chr4.2:22124968-22124987 MS.gene39446:intron 35.0%
! TTCTTTTATGCATTTGGGCT+AGG + chr4.2:22124858-22124877 MS.gene39446:intron 35.0%
!! AGGAGTATGAGCTTTTACAA+TGG - chr4.2:22127429-22127448 None:intergenic 35.0%
!! ATAGCTCTATTGCTATTTCG+CGG - chr4.2:22124550-22124569 None:intergenic 35.0%
!! CGAGAGATGATGGAAATAAA+AGG + chr4.2:22124441-22124460 MS.gene39446:intron 35.0%
!! GAGAACAAGTGATTGTTTTG+AGG - chr4.2:22126319-22126338 None:intergenic 35.0%
!! TCATAATGCCGTTATTTCTG+GGG + chr4.2:22127064-22127083 MS.gene39446:intron 35.0%
!! TCCATCACACTTTGATTTTC+TGG - chr4.2:22126926-22126945 None:intergenic 35.0%
!! TTGTAATTTCCTAATGGGCT+TGG + chr4.2:22125098-22125117 MS.gene39446:CDS 35.0%
!! TTTTTCAAAGATCCAAAGGG+AGG + chr4.2:22127220-22127239 MS.gene39446:intron 35.0%
!!! ATGTTTTGAAAATGCCGCAA+TGG + chr4.2:22126482-22126501 MS.gene39446:CDS 35.0%
!!! TCCCCAAACATAGACTTTTT+TGG + chr4.2:22128110-22128129 MS.gene39446:intron 35.0%
AACCAACTTATAGGGTTCTC+TGG + chr4.2:22126526-22126545 MS.gene39446:CDS 40.0%
AACCACTGAATGGAAAATCC+CGG + chr4.2:22128545-22128564 MS.gene39446:CDS 40.0%
AAGAATACTGTGGATCTACG+AGG + chr4.2:22128631-22128650 MS.gene39446:CDS 40.0%
AAGATTGTTTCATCATCCCC+AGG - chr4.2:22127566-22127585 None:intergenic 40.0%
ACCAACTTATAGGGTTCTCT+GGG + chr4.2:22126527-22126546 MS.gene39446:CDS 40.0%
AGAGAAGTCCAAAACTTCCT+TGG + chr4.2:22125994-22126013 MS.gene39446:CDS 40.0%
AGCATTCACTTCCACTTCAA+TGG + chr4.2:22123959-22123978 MS.gene39446:CDS 40.0%
AGGCCACTTCCAAAAACTTA+CGG - chr4.2:22126299-22126318 None:intergenic 40.0%
AGGTTGCAATTCTGTTGAAG+AGG + chr4.2:22125635-22125654 MS.gene39446:CDS 40.0%
ATAGCCTCAAAACTCTCGAA+TGG + chr4.2:22123913-22123932 MS.gene39446:CDS 40.0%
CATTCACACAGGTTTGAACT+TGG + chr4.2:22124245-22124264 MS.gene39446:intron 40.0%
CCGCAGATATTGTAAGATAC+TGG - chr4.2:22126394-22126413 None:intergenic 40.0%
CCTATGCTCAATGGATGAAT+GGG + chr4.2:22125580-22125599 MS.gene39446:CDS 40.0%
CTATGCTCAATGGATGAATG+GGG + chr4.2:22125581-22125600 MS.gene39446:CDS 40.0%
CTCATTGCTTTGCACTTTCT+TGG + chr4.2:22127160-22127179 MS.gene39446:intron 40.0%
GACATTCAATTACAGACTGC+AGG - chr4.2:22127124-22127143 None:intergenic 40.0%
GATAAGACAGTTAGAGAGGA+AGG + chr4.2:22127853-22127872 MS.gene39446:intron 40.0%
GCATCACTTATGTCAAAAGC+CGG + chr4.2:22125954-22125973 MS.gene39446:CDS 40.0%
GCATTCACTTCCACTTCAAT+GGG + chr4.2:22123960-22123979 MS.gene39446:CDS 40.0%
GCATTCAGAACTATACCTTC+TGG - chr4.2:22125357-22125376 None:intergenic 40.0%
GGGCAATCTAATGAAAGTGA+TGG - chr4.2:22124528-22124547 None:intergenic 40.0%
GTCTGGAAATTCTTCTGAGT+TGG + chr4.2:22125773-22125792 MS.gene39446:CDS 40.0%
GTTAAAGGCTCAAGCTGAAA+AGG + chr4.2:22126710-22126729 MS.gene39446:CDS 40.0%
GTTCTGATCTAATGATCTCC+AGG - chr4.2:22125188-22125207 None:intergenic 40.0%
TAGACGTGAAACGATGCTTA+TGG + chr4.2:22127256-22127275 MS.gene39446:CDS 40.0%
TCTGTACACTAACGCTTTGA+AGG + chr4.2:22128460-22128479 MS.gene39446:intron 40.0%
TGAAACGATGCTTATGGCAA+AGG + chr4.2:22127262-22127281 MS.gene39446:CDS 40.0%
TGAAGAGGACAATGACATTG+CGG + chr4.2:22125650-22125669 MS.gene39446:CDS 40.0%
TGGGGATGATGAAACAATCT+TGG + chr4.2:22127565-22127584 MS.gene39446:CDS 40.0%
TGTCAAGGAAGAAAACAGAG+TGG + chr4.2:22127756-22127775 MS.gene39446:intron 40.0%
TGTTCATCTCTAAGTTACCC+CGG - chr4.2:22128567-22128586 None:intergenic 40.0%
TTAGAGATGAACAGCAGCAA+TGG + chr4.2:22128574-22128593 MS.gene39446:CDS 40.0%
TTAGTAAGAATTGGGGCATG+TGG + chr4.2:22128211-22128230 MS.gene39446:intron 40.0%
TTATGGCAAAGGAAGCTCAA+CGG + chr4.2:22127273-22127292 MS.gene39446:CDS 40.0%
TTCAGTTTAGGTACTCTTGG+AGG + chr4.2:22125615-22125634 MS.gene39446:CDS 40.0%
TTGGGATAAGACAGTTAGAG+AGG + chr4.2:22127849-22127868 MS.gene39446:intron 40.0%
! ACTCTGTTTTCTTCCTTGAC+AGG - chr4.2:22127757-22127776 None:intergenic 40.0%
! AGGTCAAACCAAGGAAGTTT+TGG - chr4.2:22126005-22126024 None:intergenic 40.0%
! AGGTTTGATCGAGAAGCTTT+TGG - chr4.2:22124040-22124059 None:intergenic 40.0%
! AGTTCCATTCGAGAGTTTTG+AGG - chr4.2:22123920-22123939 None:intergenic 40.0%
! CAACAACAACTCGACTTTTC+TGG + chr4.2:22124080-22124099 MS.gene39446:CDS 40.0%
! CAAGGGACTGCAATTTTGAA+GGG - chr4.2:22126236-22126255 None:intergenic 40.0%
! CTTATCTAGTGAGTTGGGAA+CGG + chr4.2:22127826-22127845 MS.gene39446:intron 40.0%
! CTTTTGACATAAGTGATGCC+AGG - chr4.2:22125953-22125972 None:intergenic 40.0%
! GAAAAGTCGAGTTGTTGTTG+AGG - chr4.2:22124080-22124099 None:intergenic 40.0%
! GAAAGTGATGGAGACTGATT+GGG - chr4.2:22124516-22124535 None:intergenic 40.0%
! GGGAGTATGTAAATAGCTAG+AGG + chr4.2:22128150-22128169 MS.gene39446:intron 40.0%
! GTTTGTTGATGGGGATGAAA+AGG - chr4.2:22123824-22123843 None:intergenic 40.0%
! TAGGCTTTCAAACTCTGAAG+CGG + chr4.2:22125443-22125462 MS.gene39446:CDS 40.0%
! TCAAGGGACTGCAATTTTGA+AGG - chr4.2:22126237-22126256 None:intergenic 40.0%
! TGAAAGTGATGGAGACTGAT+TGG - chr4.2:22124517-22124536 None:intergenic 40.0%
! TTGGTTTGACCTTATCCTTG+CGG + chr4.2:22126013-22126032 MS.gene39446:CDS 40.0%
!! AACCCTATAAGTTGGTTGCA+AGG - chr4.2:22126523-22126542 None:intergenic 40.0%
!! AAGGGACTGCAATTTTGAAG+GGG - chr4.2:22126235-22126254 None:intergenic 40.0%
!! AAGTGTGATGGATGTTGTGA+AGG + chr4.2:22126934-22126953 MS.gene39446:intron 40.0%
!! CTCTGGAGCAACATACTTTA+TGG + chr4.2:22125383-22125402 MS.gene39446:CDS 40.0%
!! GGGTAATGGAAATGGAACAA+TGG + chr4.2:22125794-22125813 MS.gene39446:CDS 40.0%
!! TAGCTCTATTGCTATTTCGC+GGG - chr4.2:22124549-22124568 None:intergenic 40.0%
!! TCTGAGTTGGGTAATGGAAA+TGG + chr4.2:22125786-22125805 MS.gene39446:CDS 40.0%
!! TGTCCGTAAGTTTTTGGAAG+TGG + chr4.2:22126293-22126312 MS.gene39446:CDS 40.0%
!!! AGGAAGTTTTGGACTTCTCT+TGG - chr4.2:22125994-22126013 None:intergenic 40.0%
!!! ATTTTGAAGTCAACTGGCAC+AGG - chr4.2:22125855-22125874 None:intergenic 40.0%
!!! TTCGAGAGTTTTGAGGCTAT+CGG - chr4.2:22123913-22123932 None:intergenic 40.0%
!!! TTTTGAAGTCAACTGGCACA+GGG - chr4.2:22125854-22125873 None:intergenic 40.0%
AAAGCTCATACTCCTGCTGT+TGG + chr4.2:22127434-22127453 MS.gene39446:CDS 45.0%
AAATAGCTAGAGGGGTTGAG+AGG + chr4.2:22128160-22128179 MS.gene39446:intron 45.0%
AAATGGTCTGTCAATACCCC+CGG - chr4.2:22125274-22125293 None:intergenic 45.0%
AACATTCAAGACCCGACAGA+TGG - chr4.2:22128430-22128449 None:intergenic 45.0%
AACTGATCCTTCAGAAGGTG+TGG + chr4.2:22126359-22126378 MS.gene39446:CDS 45.0%
AAGCTATCCTCGAGAGATGA+TGG + chr4.2:22124431-22124450 MS.gene39446:intron 45.0%
AAGGAAAAGAGTGAGGGAGA+CGG - chr4.2:22127194-22127213 None:intergenic 45.0%
AAGGTTTGAAGGAGAAGCGA+GGG - chr4.2:22123854-22123873 None:intergenic 45.0%
AATAGCTAGAGGGGTTGAGA+GGG + chr4.2:22128161-22128180 MS.gene39446:intron 45.0%
ACATTCAAGACCCGACAGAT+GGG - chr4.2:22128429-22128448 None:intergenic 45.0%
ACCACTGAATGGAAAATCCC+GGG + chr4.2:22128546-22128565 MS.gene39446:CDS 45.0%
AGTGGAACTGATCCTTCAGA+AGG + chr4.2:22126354-22126373 MS.gene39446:CDS 45.0%
ATCTCAGGACCTAATACTGG+AGG + chr4.2:22125900-22125919 MS.gene39446:CDS 45.0%
CAATCTACCAGAAACGGCAA+CGG - chr4.2:22124132-22124151 None:intergenic 45.0%
CCAACTTATAGGGTTCTCTG+GGG + chr4.2:22126528-22126547 MS.gene39446:CDS 45.0%
CCCATTCATCCATTGAGCAT+AGG - chr4.2:22125583-22125602 None:intergenic 45.0%
GCAAGGATAAGGTCAAACCA+AGG - chr4.2:22126014-22126033 None:intergenic 45.0%
GCATCGTTTCACGTCTATCA+AGG - chr4.2:22127253-22127272 None:intergenic 45.0%
GCCTATGCTCAATGGATGAA+TGG + chr4.2:22125579-22125598 MS.gene39446:CDS 45.0%
GCTCTATCAGTCATTACAGG+AGG + chr4.2:22126677-22126696 MS.gene39446:CDS 45.0%
GGTTCAAAATGAGTGACACG+AGG - chr4.2:22128793-22128812 None:intergenic 45.0%
GTAGCAGAAGCAAGGTTTGA+AGG - chr4.2:22123865-22123884 None:intergenic 45.0%
GTCATCTCAGGACCTAATAC+TGG + chr4.2:22125897-22125916 MS.gene39446:CDS 45.0%
GTGTGTGTGTGTGTATCATG+TGG + chr4.2:22126181-22126200 MS.gene39446:intron 45.0%
GTTCATCTCTAAGTTACCCC+GGG - chr4.2:22128566-22128585 None:intergenic 45.0%
GTTGCAGGATTCTTTGCACT+TGG - chr4.2:22127647-22127666 None:intergenic 45.0%
TAATACATGGGATGGGCACT+GGG + chr4.2:22128728-22128747 MS.gene39446:CDS 45.0%
TATGGCAAAGGAAGCTCAAC+GGG + chr4.2:22127274-22127293 MS.gene39446:CDS 45.0%
TCTCAGGACCTAATACTGGA+GGG + chr4.2:22125901-22125920 MS.gene39446:CDS 45.0%
TCTGCGGGAACATGTTAACT+TGG + chr4.2:22126407-22126426 MS.gene39446:CDS 45.0%
TGATAGAGCAAGTGAAGACC+TGG + chr4.2:22125167-22125186 MS.gene39446:CDS 45.0%
TGCTGAGAGTTGCTTGCATA+TGG - chr4.2:22123943-22123962 None:intergenic 45.0%
TTACATACTCCCTCCGCTAT+TGG - chr4.2:22128142-22128161 None:intergenic 45.0%
TTCAATGAAAACGTTGGGCC+TGG + chr4.2:22125932-22125951 MS.gene39446:CDS 45.0%
TTCTTAGATGTTTGCACCGC+TGG - chr4.2:22128616-22128635 None:intergenic 45.0%
TTGGATATGTCCAATAGCGG+AGG + chr4.2:22128129-22128148 MS.gene39446:intron 45.0%
! AACTAGTTCTCCCACTCATC+AGG + chr4.2:22127664-22127683 MS.gene39446:CDS 45.0%
! ACTAGTTCTCCCACTCATCA+GGG + chr4.2:22127665-22127684 MS.gene39446:CDS 45.0%
! CTCACGTGTCCGTAAGTTTT+TGG + chr4.2:22126287-22126306 MS.gene39446:CDS 45.0%
! GCAGTTTTCCCTCCAGTATT+AGG - chr4.2:22125912-22125931 None:intergenic 45.0%
! GTTGCTGTCGTTTAGAACCT+TGG - chr4.2:22124743-22124762 None:intergenic 45.0%
! TAGATCTGGAACTAGAGTGG+TGG + chr4.2:22125875-22125894 MS.gene39446:CDS 45.0%
! TGCCGCAATGGAATTTTCAC+TGG + chr4.2:22126494-22126513 MS.gene39446:CDS 45.0%
! TGGATATGTCCAATAGCGGA+GGG + chr4.2:22128130-22128149 MS.gene39446:intron 45.0%
!! AGCTCTATTGCTATTTCGCG+GGG - chr4.2:22124548-22124567 None:intergenic 45.0%
!! AGGGATTGAGGGTTTGTTGA+TGG - chr4.2:22123835-22123854 None:intergenic 45.0%
!! GCCGTTATTTCTGGGGAAAA+TGG + chr4.2:22127071-22127090 MS.gene39446:intron 45.0%
!! GGATTGAGGGTTTGTTGATG+GGG - chr4.2:22123833-22123852 None:intergenic 45.0%
!! GGGATTGAGGGTTTGTTGAT+GGG - chr4.2:22123834-22123853 None:intergenic 45.0%
!! TGTTTTCTAGAGACGACTCC+AGG - chr4.2:22125731-22125750 None:intergenic 45.0%
!!! AGTTTTGGACTTCTCTTGGC+AGG - chr4.2:22125990-22126009 None:intergenic 45.0%
!!! GAGTTTTGAGGCTATCGGAT+TGG - chr4.2:22123908-22123927 None:intergenic 45.0%
!!! TCGTCTCAAATTTTTCGGGC+CGG + chr4.2:22125252-22125271 MS.gene39446:CDS 45.0%
AACCAGAACAGCAGCAAGAG+CGG + chr4.2:22126646-22126665 MS.gene39446:CDS 50.0%
AAGGAGAAGCGAGGGATTGA+GGG - chr4.2:22123846-22123865 None:intergenic 50.0%
ACCTGCTTTCCCTGATGAGT+GGG - chr4.2:22127677-22127696 None:intergenic 50.0%
ACTAGAGTGGTGGTCATCTC+AGG + chr4.2:22125885-22125904 MS.gene39446:CDS 50.0%
AGAGACGACTCCAGGAGTAA+TGG - chr4.2:22125723-22125742 None:intergenic 50.0%
AGCAGCGAGTGTTCTTCGAA+CGG - chr4.2:22124177-22124196 None:intergenic 50.0%
AGCTGCGATCCATCTTGAGA+TGG + chr4.2:22128669-22128688 MS.gene39446:CDS 50.0%
ATTTGCACCTGCCCATCTGT+CGG + chr4.2:22128415-22128434 MS.gene39446:intron 50.0%
CAAGAGCTGCCTATGCTCAA+TGG + chr4.2:22125571-22125590 MS.gene39446:CDS 50.0%
CAAGGTTTGAAGGAGAAGCG+AGG - chr4.2:22123855-22123874 None:intergenic 50.0%
CAAGTCCGTGTGAAGGGATT+GGG + chr4.2:22127512-22127531 MS.gene39446:CDS 50.0%
CACAGTGGTAGAATTGCCTG+GGG + chr4.2:22127547-22127566 MS.gene39446:CDS 50.0%
CCACAGTGGTAGAATTGCCT+GGG + chr4.2:22127546-22127565 MS.gene39446:CDS 50.0%
CCACTGAATGGAAAATCCCG+GGG + chr4.2:22128547-22128566 MS.gene39446:CDS 50.0%
CCCCAGAGAACCCTATAAGT+TGG - chr4.2:22126531-22126550 None:intergenic 50.0%
CTCCAACATCCGCAAGGATA+AGG - chr4.2:22126025-22126044 None:intergenic 50.0%
GAAAGAGCCACACCTTCTGA+AGG - chr4.2:22126369-22126388 None:intergenic 50.0%
GACCTTATCCTTGCGGATGT+TGG + chr4.2:22126020-22126039 MS.gene39446:CDS 50.0%
GATGGGGATGAAAAGGTTGC+AGG - chr4.2:22123817-22123836 None:intergenic 50.0%
GCAGGATTCTTTGCACTTGG+TGG - chr4.2:22127644-22127663 None:intergenic 50.0%
GGGAGGAAAATTAGCCACAG+TGG + chr4.2:22127532-22127551 MS.gene39446:CDS 50.0%
GTAATACATGGGATGGGCAC+TGG + chr4.2:22128727-22128746 MS.gene39446:CDS 50.0%
TACCTGCTTTCCCTGATGAG+TGG - chr4.2:22127678-22127697 None:intergenic 50.0%
TAGAATGTGCGTGGGCATCA+GGG + chr4.2:22125311-22125330 MS.gene39446:CDS 50.0%
TATGCGGCATCCATTACTCC+TGG + chr4.2:22125710-22125729 MS.gene39446:CDS 50.0%
TCGGTTGAGTAGCAGAAGCA+AGG - chr4.2:22123873-22123892 None:intergenic 50.0%
TCTTCGAACGGTGCAAAGCT+CGG - chr4.2:22124165-22124184 None:intergenic 50.0%
TGACCATGCACAAAAGTGGG+TGG + chr4.2:22126614-22126633 MS.gene39446:CDS 50.0%
TGAGTGGGAGAACTAGTTGC+AGG - chr4.2:22127662-22127681 None:intergenic 50.0%
TGATGGAGACTGATTGGGAG+AGG - chr4.2:22124511-22124530 None:intergenic 50.0%
TTCCTCCCAATCCCTTCACA+CGG - chr4.2:22127520-22127539 None:intergenic 50.0%
TTCGATAAGCTGTGCGACCA+AGG + chr4.2:22124723-22124742 MS.gene39446:intron 50.0%
! AATACATGGGATGGGCACTG+GGG + chr4.2:22128729-22128748 MS.gene39446:CDS 50.0%
! AGGGTTCTCTGGGGATGTAT+CGG + chr4.2:22126537-22126556 MS.gene39446:CDS 50.0%
! ATTCTCTCCGTTGCCGTTTC+TGG + chr4.2:22124122-22124141 MS.gene39446:CDS 50.0%
! CGCTGATTGCCATCTCAAGA+TGG - chr4.2:22128681-22128700 None:intergenic 50.0%
! CGGACTTGCTCTCCAAATTG+TGG - chr4.2:22127500-22127519 None:intergenic 50.0%
! CGTCGATCTAGAATGTGCGT+GGG + chr4.2:22125303-22125322 MS.gene39446:CDS 50.0%
! CTAGTGAGTTGGGAACGGTT+GGG + chr4.2:22127831-22127850 MS.gene39446:intron 50.0%
! GCTATCGGATTGGACTGAGT+TGG - chr4.2:22123898-22123917 None:intergenic 50.0%
! GCTTCTAAAAGCGCGTCACA+AGG + chr4.2:22125816-22125835 MS.gene39446:CDS 50.0%
! GGATTGGACTGAGTTGGACT+CGG - chr4.2:22123892-22123911 None:intergenic 50.0%
! TCTAGTGAGTTGGGAACGGT+TGG + chr4.2:22127830-22127849 MS.gene39446:intron 50.0%
! TTGTTGTTGAGGGACGAGTC+TGG - chr4.2:22124069-22124088 None:intergenic 50.0%
!! AGAAGCTTTTGGCTGTGGTG+TGG - chr4.2:22124029-22124048 None:intergenic 50.0%
!! GATCGAGAAGCTTTTGGCTG+TGG - chr4.2:22124034-22124053 None:intergenic 50.0%
!! TCTCCACCCACTTTTGTGCA+TGG - chr4.2:22126620-22126639 None:intergenic 50.0%
!!! CGTCTCAAATTTTTCGGGCC+GGG + chr4.2:22125253-22125272 MS.gene39446:CDS 50.0%
!!! GTCTCAAATTTTTCGGGCCG+GGG + chr4.2:22125254-22125273 MS.gene39446:CDS 50.0%
!!! TCTCAAATTTTTCGGGCCGG+GGG + chr4.2:22125255-22125274 MS.gene39446:CDS 50.0%
AACAACGCCCGTTTACCCGT+CGG + chr4.2:22123996-22124015 MS.gene39446:CDS 55.0%
AAGAACACTCGCTGCTGCCA+GGG + chr4.2:22124181-22124200 MS.gene39446:CDS 55.0%
AATGCGATCAGCGCCACTGA+TGG - chr4.2:22127465-22127484 None:intergenic 55.0%
AGTACGTCCGACGGGTAAAC+GGG - chr4.2:22124006-22124025 None:intergenic 55.0%
ATGCGATCAGCGCCACTGAT+GGG - chr4.2:22127464-22127483 None:intergenic 55.0%
CAAGGTCTTCTGCCTCCCTT+TGG - chr4.2:22127235-22127254 None:intergenic 55.0%
CAATGACATTGCGGTCGTGC+AGG + chr4.2:22125659-22125678 MS.gene39446:CDS 55.0%
CCCAGGCAATTCTACCACTG+TGG - chr4.2:22127549-22127568 None:intergenic 55.0%
CTAGAATGTGCGTGGGCATC+AGG + chr4.2:22125310-22125329 MS.gene39446:CDS 55.0%
CTGATGGGAGAACCAACAGC+AGG - chr4.2:22127449-22127468 None:intergenic 55.0%
CTTCGAACGGTGCAAAGCTC+GGG - chr4.2:22124164-22124183 None:intergenic 55.0%
CTTGGCAGGCAGATGCATTC+CGG - chr4.2:22125976-22125995 None:intergenic 55.0%
GAAGGAGAAGCGAGGGATTG+AGG - chr4.2:22123847-22123866 None:intergenic 55.0%
GAGTACGTCCGACGGGTAAA+CGG - chr4.2:22124007-22124026 None:intergenic 55.0%
GAGTGAGGGAGACGGATAGA+CGG - chr4.2:22127186-22127205 None:intergenic 55.0%
GCAAGTCCGTGTGAAGGGAT+TGG + chr4.2:22127511-22127530 MS.gene39446:CDS 55.0%
GCCACAGTGGTAGAATTGCC+TGG + chr4.2:22127545-22127564 MS.gene39446:CDS 55.0%
GGAGAGCAAGTCCGTGTGAA+GGG + chr4.2:22127506-22127525 MS.gene39446:CDS 55.0%
GGATCTACGAGGTATGCGAC+TGG + chr4.2:22128642-22128661 MS.gene39446:CDS 55.0%
GGTGATCTCCAACATCCGCA+AGG - chr4.2:22126031-22126050 None:intergenic 55.0%
GTATGTTGCTCCAGAGCTGC+TGG - chr4.2:22125379-22125398 None:intergenic 55.0%
TCCCACTCATCAGGGAAAGC+AGG + chr4.2:22127673-22127692 MS.gene39446:CDS 55.0%
TCTTGGCTATCCCCGAGGAT+TGG - chr4.2:22127002-22127021 None:intergenic 55.0%
TGAGGCACGGCATGATGTGT+TGG - chr4.2:22126968-22126987 None:intergenic 55.0%
TGCGGATGTTGGAGATCACC+AGG + chr4.2:22126031-22126050 MS.gene39446:CDS 55.0%
TGGAGAGCAAGTCCGTGTGA+AGG + chr4.2:22127505-22127524 MS.gene39446:CDS 55.0%
TGGGCATCAGGGCTTCGTAT+AGG + chr4.2:22125322-22125341 MS.gene39446:CDS 55.0%
TTTGCACCTGCCCATCTGTC+GGG + chr4.2:22128416-22128435 MS.gene39446:intron 55.0%
! CCCCGGGATTTTCCATTCAG+TGG - chr4.2:22128550-22128569 None:intergenic 55.0%
! GCGTCGATCTAGAATGTGCG+TGG + chr4.2:22125302-22125321 MS.gene39446:CDS 55.0%
! GTTCTGAATGCCAGCAGCTC+TGG + chr4.2:22125366-22125385 MS.gene39446:CDS 55.0%
!! GCTGTTGGTTCTCCCATCAG+TGG + chr4.2:22127449-22127468 MS.gene39446:CDS 55.0%
!! TTCAAACTCTGAAGCGGCCG+AGG + chr4.2:22125449-22125468 MS.gene39446:CDS 55.0%
ACAGCTCTTGGCTATCCCCG+AGG - chr4.2:22127007-22127026 None:intergenic 60.0%
AGGGGTTGAGAGGGAGAGAC+CGG + chr4.2:22128170-22128189 MS.gene39446:intron 60.0%
CTCCGCTCTTGCTGCTGTTC+TGG - chr4.2:22126651-22126670 None:intergenic 60.0%
GAACAGCAGCAAGAGCGGAG+AGG + chr4.2:22126651-22126670 MS.gene39446:CDS 60.0%
GAAGAACACTCGCTGCTGCC+AGG + chr4.2:22124180-22124199 MS.gene39446:CDS 60.0%
GTCCGTGTGAAGGGATTGGG+AGG + chr4.2:22127515-22127534 MS.gene39446:CDS 60.0%
GTGGTGTGGAGTACGTCCGA+CGG - chr4.2:22124015-22124034 None:intergenic 60.0%
TCAAGACCCGACAGATGGGC+AGG - chr4.2:22128425-22128444 None:intergenic 60.0%
TCCTGCGCTCCAAGCCCATT+AGG - chr4.2:22125110-22125129 None:intergenic 60.0%
TGGTGTGGAGTACGTCCGAC+GGG - chr4.2:22124014-22124033 None:intergenic 60.0%
TTGAGGGACGAGTCTGGCAG+CGG - chr4.2:22124063-22124082 None:intergenic 60.0%
! GACGGGTAAACGGGCGTTGT+TGG - chr4.2:22123997-22124016 None:intergenic 60.0%
! GGGTAAACGGGCGTTGTTGG+CGG - chr4.2:22123994-22124013 None:intergenic 60.0%
! TAAACGGGCGTTGTTGGCGG+CGG - chr4.2:22123991-22124010 None:intergenic 60.0%
!! TCCTAATGGGCTTGGAGCGC+AGG + chr4.2:22125106-22125125 MS.gene39446:CDS 60.0%
GGCGGAGGAGCCCATTGAAG+TGG - chr4.2:22123973-22123992 None:intergenic 65.0%
AGGGACGAGTCTGGCAGCGG+AGG - chr4.2:22124060-22124079 None:intergenic 70.0%
! ACGGGCGTTGTTGGCGGCGG+AGG - chr4.2:22123988-22124007 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 22123804 22128858 22123804 ID=MS.gene39446
chr4.2 mRNA 22123804 22128858 22123804 ID=MS.gene39446.t1;Parent=MS.gene39446
chr4.2 exon 22123804 22124255 22123804 ID=MS.gene39446.t1.exon1;Parent=MS.gene39446.t1
chr4.2 CDS 22123804 22124255 22123804 ID=cds.MS.gene39446.t1;Parent=MS.gene39446.t1
chr4.2 exon 22125068 22126052 22125068 ID=MS.gene39446.t1.exon2;Parent=MS.gene39446.t1
chr4.2 CDS 22125068 22126052 22125068 ID=cds.MS.gene39446.t1;Parent=MS.gene39446.t1
chr4.2 exon 22126249 22126773 22126249 ID=MS.gene39446.t1.exon3;Parent=MS.gene39446.t1
chr4.2 CDS 22126249 22126773 22126249 ID=cds.MS.gene39446.t1;Parent=MS.gene39446.t1
chr4.2 exon 22127230 22127694 22127230 ID=MS.gene39446.t1.exon4;Parent=MS.gene39446.t1
chr4.2 CDS 22127230 22127694 22127230 ID=cds.MS.gene39446.t1;Parent=MS.gene39446.t1
chr4.2 exon 22128544 22128858 22128544 ID=MS.gene39446.t1.exon5;Parent=MS.gene39446.t1
chr4.2 CDS 22128544 22128858 22128544 ID=cds.MS.gene39446.t1;Parent=MS.gene39446.t1
Gene Sequence

>MS.gene39446

ATGCAACTCACCTGCAACCTTTTCATCCCCATCAACAAACCCTCAATCCCTCGCTTCTCCTTCAAACCTTGCTTCTGCTACTCAACCGAGTCCAACTCAGTCCAATCCGATAGCCTCAAAACTCTCGAATGGAACTCCATATGCAAGCAACTCTCAGCATTCACTTCCACTTCAATGGGCTCCTCCGCCGCCAACAACGCCCGTTTACCCGTCGGACGTACTCCACACCACAGCCAAAAGCTTCTCGATCAAACCTCCGCTGCCAGACTCGTCCCTCAACAACAACTCGACTTTTCTGGAATACATGACTTGACTGACATTCTCTCCGTTGCCGTTTCTGGTAGATTGTTGACTATTCCCGAGCTTTGCACCGTTCGAAGAACACTCGCTGCTGCCAGGGAATTGTTTGATAGTTTGAAACACTTGGCTTCTGTATCTAATCATTCACACAGGTTTGAACTTGGAATCTAACTCAAAAACTCAATAGTTTAAGACATGTTTGGATAAACAACTTAACAAAGTGCTTATCATACAAGTGATTATGTATTATGTTTGAAGTTAGTAGTTCGATAACAAAAGATAAAATCAAATCAAATTGTTTTTATATAAGCTAGAAGATGTTTTCATAAGCTATCCTCGAGAGATGATGGAAATAAAAGGAAACAGTTTATGGGCACATCTTAATCTATTAACATGTTACATAACCTCTCCCAATCAGTCTCCATCACTTTCATTAGATTGCCCCGCGAAATAGCAATAGAGCTATTTCAGACATTTCTAATTGATGGCTTCCAGTATATTAGCTCAAATAAGTCAATCCAAACATACGCTAAGTAGTAGTTGTTTTAAGTAACACTTATTCATTCTTAGCAATGCATGATTCCTTGATTGCTTAGAGAATTTCTGTATGGAGATTAAATTCGATAAGCTGTGCGACCAAGGTTCTAAACGACAGCAACGTTTTTGATGTCTATGGGAAGTCATATCAGTCAATTTGAGTGCACTACAAGTTTTTTTTTTTCCTTTTCATAATCTGATTCAGTTCACAAGCAGCTTCTTTTATGCATTTGGGCTAGGTGTCGTATTTTTCTTGACAAAGTTCGGAGCATAGATCATTTCATAATATCATGTCCCAATAAGGTCTTAAAAGAGTGTTAGTAATACTCTAATTGCACTTGTGCTTTTGGGCATAACTGATTCCTTTTACAAATCCAAAGTAAAAGTTCACAAAAATAACTTCGCTGATGCAATTGTTTTCAATTAGGTACTCACCCCTTCTTGAAATACTGCAAAATTGTAATTTCCTAATGGGCTTGGAGCGCAGGATAGAATTTTGCATAGATTGCAATCTTTTGGTAATTCTTGATAGAGCAAGTGAAGACCTGGAGATCATTAGATCAGAACGAAAAAGGAACATAGAAATCCTGGACTCTTTATTGAAGGAAATATCGTCTCAAATTTTTCGGGCCGGGGGTATTGACAGACCATTTATTACTAAGCGTCGATCTAGAATGTGCGTGGGCATCAGGGCTTCGTATAGGTATTTACTTCCAGAAGGTATAGTTCTGAATGCCAGCAGCTCTGGAGCAACATACTTTATGGAACCGAAAGAAGCAATAGATTTGAACAACATGGAAGTTAGGCTTTCAAACTCTGAAGCGGCCGAGGAAAGAGCAATTTTGAGTATGCTTGCATCTGAAATAGCAAATTCAGAATCAGAGATAAAATATTTGTTGGATAAAATTCTTGAGGTTGATCTTGCTTTTGCAAGAGCTGCCTATGCTCAATGGATGAATGGGGTATGTCCAATTTTCAGTTTAGGTACTCTTGGAGGTTGCAATTCTGTTGAAGAGGACAATGACATTGCGGTCGTGCAGGATGACGATTTAACAGTAAATATTGAGGGTATGCGGCATCCATTACTCCTGGAGTCGTCTCTAGAAAACATTTCAGATAATATCACACTAAGGTCTGGAAATTCTTCTGAGTTGGGTAATGGAAATGGAACAATGGCTTCTAAAAGCGCGTCACAAGGCATAACAGACTTCCCTGTGCCAGTTGACTTCAAAATTAGATCTGGAACTAGAGTGGTGGTCATCTCAGGACCTAATACTGGAGGGAAAACTGCTTCAATGAAAACGTTGGGCCTGGCATCACTTATGTCAAAAGCCGGAATGCATCTGCCTGCCAAGAGAAGTCCAAAACTTCCTTGGTTTGACCTTATCCTTGCGGATGTTGGAGATCACCAGGTAATATCTGAACTTTTTTTATGCATGATGAAGATTTTTTATTTTATTTTATTTTACAATATATATATATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATCATGTGGCTGTTTCATTTGTGTCTGATCTTTTTCTCCCCTTCAAAATTGCAGTCCCTTGAACAAAATCTCTCAACTTTTAGTGGGCACATCTCACGTGTCCGTAAGTTTTTGGAAGTGGCCTCAAAACAATCACTTGTTCTCATTGATGAAATTGGTAGTGGAACTGATCCTTCAGAAGGTGTGGCTCTTTCTGCCAGTATCTTACAATATCTGCGGGAACATGTTAACTTGGCTGTTGTGACCACTCATTATGCTGATCTAAGTACTTTGAAGGAAAGGGATACATGTTTTGAAAATGCCGCAATGGAATTTTCACTGGAAACCTTGCAACCAACTTATAGGGTTCTCTGGGGATGTATCGGTGATTCAAATGCATTAAGCATAGCGCAATCTATTGGCTTTGATAAAAATATAATTGACCATGCACAAAAGTGGGTGGAGAAGTTAAAACCAGAACAGCAGCAAGAGCGGAGAGGAATGCTCTATCAGTCATTACAGGAGGAAAAAAATCGGTTAAAGGCTCAAGCTGAAAAGGCTGCTTCCATTCATGCAGAAATTATGAATGTGTACTCTGAGGTACAATCTAGCTGTTCAGTTAGAAAGAGATACTGTGTTTCTTTATTATAGTTTCTTCTCCTTGGTCCATATAGTATGACAATCATTATTGTCCCTTTTAAAGTTTATCTGAAATTTGCATCGTTCATAGTAATGACTCAGTAAATTGACCAGAAAATCAAAGTGTGATGGATGTTGTGAAGGTCTTTTGACCAACACATCATGCCGTGCCTCATTAATAGATATCCAATCCTCGGGGATAGCCAAGAGCTGTTAATTTAAATATGTAGTGCCTCTTCCATCCAAAATTTTCATAATGCCGTTATTTCTGGGGAAAATGGTTCAGCGTAAGAATTGTAGAGCATTTGCCTGCAGTCTGTAATTGAATGTCATCATATTTGCTGTTGCTCATTGCTTTGCACTTTCTTGGCCGTCTATCCGTCTCCCTCACTCTTTTCCTTTTCTTCTTTTTCAAAGATCCAAAGGGAGGCAGAAGACCTTGATAGACGTGAAACGATGCTTATGGCAAAGGAAGCTCAACGGGTCCAACAAGAGTTAGAAGATGCAAAATCTCAAATGGAAATTGTAATACAGAAATTCGAAAAGCAACTAAAAGATTTGGGACGCAACCAACTCAATTCAATAATTAAAGAATCTGAAACTGCAATTGCCTCCATTGTAAAAGCTCATACTCCTGCTGTTGGTTCTCCCATCAGTGGCGCTGATCGCATTACATCATATACTCCACAATTTGGAGAGCAAGTCCGTGTGAAGGGATTGGGAGGAAAATTAGCCACAGTGGTAGAATTGCCTGGGGATGATGAAACAATCTTGGTACAGTATGGGAAAGTGAAAGTACGTGTGAAGAAAAATCGCATCAGAGCTATTCCACCAAGTGCAAAGAATCCTGCAACTAGTTCTCCCACTCATCAGGGAAAGCAGGTATGTACAAAGAAATCTTTGCTGTCATATAAATAATCTAATTCAATTAATATAGTTAACCTGTCAAGGAAGAAAACAGAGTGGTATACCTTATACGTTTCCATTAAGAAAGTTATTTTGCAAGCAGTAATCTTATCTAGTGAGTTGGGAACGGTTGGGATAAGACAGTTAGAGAGGAAGGTTACTTCCTCTAGTTTCAAATATAATAAGAAGAAAAAAAGTAGTTCGCGCTAGTTAAGAATACTATAAAATCACATTTAATTTTTTGATGTAATAAAAAATATAATTGTATATTTATTGAAAGAAGTTATTGGAAAATGAAATCCAAATTTTATTGAAAGGTATTTTATATTTAATCTGGCATTTTTTCTTTTGAAGTAATGGTAAAATTAATTTAGAATTGATATATTTTGGATCCCCAAACATAGACTTTTTTGGATATGTCCAATAGCGGAGGGAGTATGTAAATAGCTAGAGGGGTTGAGAGGGAGAGACCGGTGAGTATTTGTTACTATTTTAGTAAGAATTGGGGCATGTGGAGTTGTAGATACTCGTTGTTCTATCATGTAATTTGGGTAGCTTTCTCCTGTTTTTCTGTAATAAATACCAGGTTCCTAACATTATATTTGGAAATTGGAACTTCAGATCATCCTATAATATAGGCACATTGAATTGATTTTCTATAAAATTGGCTTCTTAACCTAATTTGATTTAGACAAAATTTGCACCTGCCCATCTGTCGGGTCTTGAATGTTTGTAGAATTTTCTGTACACTAACGCTTTGAAGGATGACAGTAATTGATCTATATCAAACTGATGAGTTTGAACACTGTTGATTTACTATTGTAGAAACCACTGAATGGAAAATCCCGGGGTAACTTAGAGATGAACAGCAGCAATGGTGATATTTATTATGGTCCAGCGGTGCAAACATCTAAGAATACTGTGGATCTACGAGGTATGCGACTGGAAGAAGCTGCGATCCATCTTGAGATGGCAATCAGCGCAAGTCAGCCATATTCAGTTCTCTTTGTAATACATGGGATGGGCACTGGGGCTGTTAAAGATCGTGCACTTGCTATTCTGCAAAAGCATCCTCGTGTCACTCATTTTGAACCAGAAAGTCCAATGAATTATGGATGTACTGTTGCACGTGTTAAGTGA
Protein sequence

>MS.gene39446.t1

MQLTCNLFIPINKPSIPRFSFKPCFCYSTESNSVQSDSLKTLEWNSICKQLSAFTSTSMGSSAANNARLPVGRTPHHSQKLLDQTSAARLVPQQQLDFSGIHDLTDILSVAVSGRLLTIPELCTVRRTLAAARELFDSLKHLASVSNHSHRYSPLLEILQNCNFLMGLERRIEFCIDCNLLVILDRASEDLEIIRSERKRNIEILDSLLKEISSQIFRAGGIDRPFITKRRSRMCVGIRASYRYLLPEGIVLNASSSGATYFMEPKEAIDLNNMEVRLSNSEAAEERAILSMLASEIANSESEIKYLLDKILEVDLAFARAAYAQWMNGVCPIFSLGTLGGCNSVEEDNDIAVVQDDDLTVNIEGMRHPLLLESSLENISDNITLRSGNSSELGNGNGTMASKSASQGITDFPVPVDFKIRSGTRVVVISGPNTGGKTASMKTLGLASLMSKAGMHLPAKRSPKLPWFDLILADVGDHQSLEQNLSTFSGHISRVRKFLEVASKQSLVLIDEIGSGTDPSEGVALSASILQYLREHVNLAVVTTHYADLSTLKERDTCFENAAMEFSLETLQPTYRVLWGCIGDSNALSIAQSIGFDKNIIDHAQKWVEKLKPEQQQERRGMLYQSLQEEKNRLKAQAEKAASIHAEIMNVYSEIQREAEDLDRRETMLMAKEAQRVQQELEDAKSQMEIVIQKFEKQLKDLGRNQLNSIIKESETAIASIVKAHTPAVGSPISGADRITSYTPQFGEQVRVKGLGGKLATVVELPGDDETILVQYGKVKVRVKKNRIRAIPPSAKNPATSSPTHQGKQKPLNGKSRGNLEMNSSNGDIYYGPAVQTSKNTVDLRGMRLEEAAIHLEMAISASQPYSVLFVIHGMGTGAVKDRALAILQKHPRVTHFEPESPMNYGCTVARVK