AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene40021


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene40021.t1 MTR_1g073000 100.000 141 0 0 1 141 47 187 2.67e-102 291
MS.gene40021.t1 MTR_4g094260 79.592 147 25 2 1 142 21 167 6.25e-82 240
MS.gene40021.t1 MTR_8g089990 72.393 163 37 2 1 157 41 201 4.55e-81 239
MS.gene40021.t1 MTR_1g069140 67.361 144 46 1 12 155 125 267 1.10e-61 192
MS.gene40021.t1 MTR_1g069140 67.361 144 46 1 12 155 134 276 1.79e-61 191
MS.gene40021.t1 MTR_1g049070 61.538 104 33 1 43 146 24 120 4.51e-41 135
MS.gene40021.t1 MTR_3g028140 36.747 166 93 6 2 157 459 622 5.17e-20 86.3
MS.gene40021.t1 MTR_3g028140 38.710 124 69 2 2 118 459 582 6.11e-18 80.1
MS.gene40021.t1 MTR_8g037000 37.097 124 67 4 34 151 624 742 2.45e-15 72.8
MS.gene40021.t1 MTR_4g074930 34.568 81 53 0 43 123 336 416 2.29e-11 61.2
MS.gene40021.t1 MTR_4g074930 34.568 81 53 0 43 123 324 404 2.37e-11 61.2
MS.gene40021.t1 MTR_4g074930 34.568 81 53 0 43 123 371 451 2.73e-11 60.8
MS.gene40021.t1 MTR_4g074930 34.568 81 53 0 43 123 359 439 2.88e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene40021.t1 AT5G51120 81.646 158 27 2 1 157 57 213 2.86e-89 260
MS.gene40021.t1 AT5G10350 77.640 161 32 3 1 157 42 202 1.66e-85 249
MS.gene40021.t1 AT5G10350 77.640 161 32 3 1 157 42 202 4.40e-85 249
MS.gene40021.t1 AT5G65260 77.019 161 32 3 1 157 46 205 1.68e-82 243
MS.gene40021.t1 AT5G51120 65.128 195 30 2 1 157 57 251 5.41e-81 240
MS.gene40021.t1 AT5G51120 81.600 125 22 1 34 157 4 128 7.40e-71 210
MS.gene40021.t1 AT5G10350 72.840 81 18 3 81 157 1 81 2.20e-32 111
MS.gene40021.t1 AT5G10350 72.840 81 18 3 81 157 1 81 2.20e-32 111
MS.gene40021.t1 AT5G10350 72.840 81 18 3 81 157 1 81 2.20e-32 111
MS.gene40021.t1 AT5G10350 72.840 81 18 3 81 157 1 81 2.20e-32 111
MS.gene40021.t1 AT3G12640 39.744 78 46 1 43 119 475 552 8.67e-13 65.5
MS.gene40021.t1 AT3G12640 39.744 78 46 1 43 119 499 576 9.98e-13 65.1
MS.gene40021.t1 AT3G12640 39.744 78 46 1 43 119 499 576 9.98e-13 65.1
MS.gene40021.t1 AT3G12640 30.827 133 81 2 20 141 444 576 2.08e-11 61.2

Find 35 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAATATTGACAGACAAATT+TGG 0.277446 1.4:+59708913 MS.gene40021:CDS
AAATGCTGTTGGACTTCTTC+AGG 0.339186 1.4:-59708862 None:intergenic
TCTTTCCACCATATGCTTAC+GGG 0.386901 1.4:+59709216 MS.gene40021:CDS
GCAAAACGTACAAATGTTCC+TGG 0.402106 1.4:+59709128 MS.gene40021:CDS
TTCTTTCCACCATATGCTTA+CGG 0.403589 1.4:+59709215 MS.gene40021:CDS
TCTACATAAGCAAATCCTTT+CGG 0.404767 1.4:-59708940 None:intergenic
TTCTGTATCTCAAGCTGAAA+AGG 0.437005 1.4:+59706328 MS.gene40021:CDS
CTTCCGTACTGCTTCAATCC+AGG 0.447125 1.4:-59709146 None:intergenic
AAAGAGATGGGCGCTGTTCA+AGG 0.456481 1.4:+59706155 MS.gene40021:CDS
CTGCTGGTTTCCGCGGTAGG+AGG 0.481689 1.4:+59709174 MS.gene40021:CDS
TCAAGCTGAAAAGGAGGAAG+TGG 0.486267 1.4:+59706337 MS.gene40021:CDS
CTCCTACCGCGGAAACCAGC+AGG 0.495710 1.4:-59709173 None:intergenic
ATAGCTTACCCGTAAGCATA+TGG 0.502661 1.4:-59709224 None:intergenic
AAGAATGGTGCAGGCATGAA+AGG 0.514431 1.4:-59709197 None:intergenic
TTAAATGAAACTGAATTGCA+TGG 0.518323 1.4:+59709000 MS.gene40021:CDS
TAAGCATATGGTGGAAAGAA+TGG 0.526698 1.4:-59709212 None:intergenic
CACAGGACTGAAAATGCTGT+TGG 0.529319 1.4:-59708873 None:intergenic
GACAAATTTGGTCAACCGAA+AGG 0.538920 1.4:+59708925 MS.gene40021:CDS
TATGGTGGAAAGAATGGTGC+AGG 0.545682 1.4:-59709206 None:intergenic
GCATGAAAGGCCTCCTACCG+CGG 0.549694 1.4:-59709184 None:intergenic
GACTCTGTTCACAGTACCAC+AGG 0.550448 1.4:-59708890 None:intergenic
ATTGCATGGCCGACAGCTGA+AGG 0.563098 1.4:+59709014 MS.gene40021:CDS
CAGTACGGAAGAAGACCTGC+TGG 0.568352 1.4:+59709158 MS.gene40021:CDS
GACCTGCTGGTTTCCGCGGT+AGG 0.570934 1.4:+59709171 MS.gene40021:CDS
AGCTAAGGTTGAGAAAGAGA+TGG 0.576917 1.4:+59706142 MS.gene40021:CDS
GATGCTCGATCGATCTATGT+TGG 0.582767 1.4:+59706359 MS.gene40021:CDS
GCTAAGGTTGAGAAAGAGAT+GGG 0.591216 1.4:+59706143 MS.gene40021:CDS
GTTCCTGGATTGAAGCAGTA+CGG 0.610328 1.4:+59709143 MS.gene40021:CDS
TCTTCGCGAAATGCAAGCTA+AGG 0.612879 1.4:+59706127 MS.gene40021:CDS
TGTATCTCAAGCTGAAAAGG+AGG 0.614985 1.4:+59706331 MS.gene40021:CDS
TGAGATACAGAAGACCCAGC+AGG 0.620132 1.4:-59706317 None:intergenic
AATTGGAGGATATGAAGAAG+AGG 0.623414 1.4:+59706075 None:intergenic
AGAAGACCTGCTGGTTTCCG+CGG 0.627211 1.4:+59709167 MS.gene40021:CDS
GCTTACCCGTAAGCATATGG+TGG 0.644904 1.4:-59709221 None:intergenic
GAAGAGGCTGAAAGAGATCG+AGG 0.648698 1.4:+59706091 MS.gene40021:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATAAACATGTAAATATT+TGG - chr1.4:59708336-59708355 None:intergenic 10.0%
!! TTAATCATAAATAAAATCAA+AGG - chr1.4:59706403-59706422 None:intergenic 10.0%
!!! AAGATAGTTTTTTTAAAAAA+TGG - chr1.4:59707195-59707214 None:intergenic 10.0%
!!! AATGTTGATTTAATTTTTTT+TGG + chr1.4:59706676-59706695 MS.gene40021:intron 10.0%
!!! ATGTTGATTTAATTTTTTTT+GGG + chr1.4:59706677-59706696 MS.gene40021:intron 10.0%
!! AATTTAATGTTTGGATTATT+GGG + chr1.4:59706626-59706645 MS.gene40021:intron 15.0%
!! ATAATTCAATTAAAACCAAA+TGG - chr1.4:59709088-59709107 None:intergenic 15.0%
!! TGTTTATAATAGAAAAACAT+GGG + chr1.4:59707782-59707801 MS.gene40021:intron 15.0%
!! TTAAAAAAACTATCTTGAAA+AGG + chr1.4:59707199-59707218 MS.gene40021:intron 15.0%
!! TTGTTTATAATAGAAAAACA+TGG + chr1.4:59707781-59707800 MS.gene40021:intron 15.0%
!! TTTAAAAAATTTGGATGATA+TGG - chr1.4:59708290-59708309 None:intergenic 15.0%
!!! ATTTGGTTTTAATTGAATTA+TGG + chr1.4:59709087-59709106 MS.gene40021:intron 15.0%
!!! TAGATAGATCTAAAATTATA+TGG + chr1.4:59708531-59708550 MS.gene40021:intron 15.0%
!!! TAGTTTTTTTAAAAAATGGA+AGG - chr1.4:59707191-59707210 None:intergenic 15.0%
!!! TGTTGATTTAATTTTTTTTG+GGG + chr1.4:59706678-59706697 MS.gene40021:intron 15.0%
!! AAAACTGTATATATACTTGT+TGG - chr1.4:59709604-59709623 None:intergenic 20.0%
!! AAAGTTTAATAGAGACAAAA+GGG - chr1.4:59707718-59707737 None:intergenic 20.0%
!! AAATTAATGAAAAGTGAAAC+AGG - chr1.4:59707095-59707114 None:intergenic 20.0%
!! ATAGTAATACATCTAATGAT+AGG + chr1.4:59709430-59709449 MS.gene40021:intron 20.0%
!! ATTTAAATAAAACTAGTGGA+TGG + chr1.4:59709394-59709413 MS.gene40021:intron 20.0%
!! CGATATTTAAATAAAACTAG+TGG + chr1.4:59709390-59709409 MS.gene40021:intron 20.0%
!! CTATTTAACAACACTTAATT+CGG - chr1.4:59707441-59707460 None:intergenic 20.0%
!! GAATTTAATGTTTGGATTAT+TGG + chr1.4:59706625-59706644 MS.gene40021:intron 20.0%
!! TAAAGTTTAATAGAGACAAA+AGG - chr1.4:59707719-59707738 None:intergenic 20.0%
!! TAGGTTAAGAATTTAATGTT+TGG + chr1.4:59706617-59706636 MS.gene40021:intron 20.0%
!! TATGAAAGATTATGAAATAG+CGG + chr1.4:59707537-59707556 MS.gene40021:intron 20.0%
!! TTAAATCTCAAAAACTTCAA+CGG + chr1.4:59708781-59708800 MS.gene40021:intron 20.0%
!! TTTAAGCACTTAAATTTCAT+GGG + chr1.4:59708449-59708468 MS.gene40021:intron 20.0%
!!! AACAAGTATATATACAGTTT+TGG + chr1.4:59709603-59709622 MS.gene40021:intron 20.0%
!!! AATGTCGATTTTTGTTTTTT+TGG + chr1.4:59706816-59706835 MS.gene40021:intron 20.0%
!!! AATTTTATTTTTAGAGTGTG+TGG + chr1.4:59707110-59707129 MS.gene40021:intron 20.0%
!!! ATGTCGATTTTTGTTTTTTT+GGG + chr1.4:59706817-59706836 MS.gene40021:intron 20.0%
!!! ATGTTTACTTTTTGTGTAAA+TGG + chr1.4:59709349-59709368 MS.gene40021:intron 20.0%
!!! CAAATGTTCTAAATTCTAAT+AGG - chr1.4:59706941-59706960 None:intergenic 20.0%
!!! CTATTAGAATTTAGAACATT+TGG + chr1.4:59706939-59706958 MS.gene40021:intron 20.0%
!!! GTTGATTTAATTTTTTTTGG+GGG + chr1.4:59706679-59706698 MS.gene40021:intron 20.0%
!!! TAATTTTAGATCTATCTAGA+TGG - chr1.4:59708529-59708548 None:intergenic 20.0%
!!! TTTTAAGCACTTAAATTTCA+TGG + chr1.4:59708448-59708467 MS.gene40021:intron 20.0%
!!! TTTTTGAGATTTAAATGACA+TGG - chr1.4:59708775-59708794 None:intergenic 20.0%
! AAAAATGCATTAGATATGTG+AGG - chr1.4:59708730-59708749 None:intergenic 25.0%
! AAAATGCATTAGATATGTGA+GGG - chr1.4:59708729-59708748 None:intergenic 25.0%
! ACAATATTGACAGACAAATT+TGG + chr1.4:59708913-59708932 MS.gene40021:CDS 25.0%
! ACTAAAATAGTTAGAGGAAT+AGG + chr1.4:59708477-59708496 MS.gene40021:intron 25.0%
! ATTAAAACCAAATGGAAACA+TGG - chr1.4:59709080-59709099 None:intergenic 25.0%
! ATTCAGATCTGTTTATCATT+TGG + chr1.4:59706249-59706268 MS.gene40021:intron 25.0%
! CACATATATATAACCCAAAT+TGG + chr1.4:59708155-59708174 MS.gene40021:intron 25.0%
! CCATAACATTTACAAATGAT+CGG - chr1.4:59708368-59708387 None:intergenic 25.0%
! CTAAAATAGTTAGAGGAATA+GGG + chr1.4:59708478-59708497 MS.gene40021:intron 25.0%
! GAGTATACTAAAATAGTTAG+AGG + chr1.4:59708471-59708490 MS.gene40021:intron 25.0%
! GTATAACCAAAAACTACATA+GGG + chr1.4:59709566-59709585 MS.gene40021:intron 25.0%
! TGTATAACCAAAAACTACAT+AGG + chr1.4:59709565-59709584 MS.gene40021:intron 25.0%
! TTAAATGAAACTGAATTGCA+TGG + chr1.4:59709000-59709019 MS.gene40021:CDS 25.0%
!! ATGTTCTAAATTCTAATAGG+AGG - chr1.4:59706938-59706957 None:intergenic 25.0%
!! ATTAAGTCAGATATGTTTTC+AGG - chr1.4:59708260-59708279 None:intergenic 25.0%
!! TGTTCTAAATTCTAATAGGA+GGG - chr1.4:59706937-59706956 None:intergenic 25.0%
!! TTATCATTTGGCTCAATTAT+TGG + chr1.4:59706261-59706280 MS.gene40021:intron 25.0%
!! TTGCTTACAGTTTGAATTTT+AGG + chr1.4:59706598-59706617 MS.gene40021:intron 25.0%
!!! CCAAATTTTTTAAAATACCC+AGG + chr1.4:59708296-59708315 MS.gene40021:intron 25.0%
!!! CCTGGGTATTTTAAAAAATT+TGG - chr1.4:59708299-59708318 None:intergenic 25.0%
!!! GCTCTTATTGTTAGTTTTAA+TGG - chr1.4:59708203-59708222 None:intergenic 25.0%
!!! TGGTTTCTAAAATATGAATC+AGG + chr1.4:59708822-59708841 MS.gene40021:intron 25.0%
!!! TGTTTTAGTAAAGTACAAGT+AGG - chr1.4:59707695-59707714 None:intergenic 25.0%
!!! TGTTTTGGTAAATAACTAGT+AGG + chr1.4:59707805-59707824 MS.gene40021:intron 25.0%
!!! TGTTTTGGTTAATAACTAGT+AGG + chr1.4:59708051-59708070 MS.gene40021:intron 25.0%
AAAACTAAAACTGCCTATTG+GGG - chr1.4:59706965-59706984 None:intergenic 30.0%
AAATTTGGATGATATGGATC+TGG - chr1.4:59708284-59708303 None:intergenic 30.0%
ACAAAAGCAACAATGAATTC+TGG - chr1.4:59709281-59709300 None:intergenic 30.0%
AGATGCCAAAATTTACACAT+TGG - chr1.4:59709317-59709336 None:intergenic 30.0%
AGGAAAACAAACTAATGCTA+GGG - chr1.4:59707377-59707396 None:intergenic 30.0%
ATAAAAATACCTTCAGCTGT+CGG - chr1.4:59709026-59709045 None:intergenic 30.0%
ATATAACCCAAATTGGACTT+CGG + chr1.4:59708162-59708181 MS.gene40021:intron 30.0%
ATATGGCCTATCTGTATTTA+TGG + chr1.4:59708548-59708567 MS.gene40021:intron 30.0%
CAAAACTAAAACTGCCTATT+GGG - chr1.4:59706966-59706985 None:intergenic 30.0%
CAAAAGCAACAATGAATTCT+GGG - chr1.4:59709280-59709299 None:intergenic 30.0%
CCAATTCCAAACAACTTTAT+AGG - chr1.4:59707063-59707082 None:intergenic 30.0%
CCGATCATTTGTAAATGTTA+TGG + chr1.4:59708365-59708384 MS.gene40021:intron 30.0%
GGAAACTAAAACACCTTTAA+AGG - chr1.4:59707356-59707375 None:intergenic 30.0%
GGTAATTTAGAAATTGAGCA+TGG + chr1.4:59707281-59707300 MS.gene40021:intron 30.0%
GTTGTTAAATAGCAGTATAG+CGG + chr1.4:59707449-59707468 MS.gene40021:intron 30.0%
TAAGCACCTATAAAGTTGTT+TGG + chr1.4:59707054-59707073 MS.gene40021:intron 30.0%
TAATGTTTGGATTATTGGGA+TGG + chr1.4:59706630-59706649 MS.gene40021:intron 30.0%
TATGGTAAACTTCTCATAAC+TGG + chr1.4:59708383-59708402 MS.gene40021:intron 30.0%
TCAAAACTAAAACTGCCTAT+TGG - chr1.4:59706967-59706986 None:intergenic 30.0%
TCTACATAAGCAAATCCTTT+CGG - chr1.4:59708943-59708962 None:intergenic 30.0%
TCTGATATCATGTCCTTTAA+AGG + chr1.4:59707340-59707359 MS.gene40021:intron 30.0%
TGAAAACTAAAACTGCTTGT+CGG - chr1.4:59706789-59706808 None:intergenic 30.0%
TTAGATCTATCTAGATGGTT+TGG - chr1.4:59708524-59708543 None:intergenic 30.0%
! ACTCAATTCTGCAATCTTTT+TGG + chr1.4:59706546-59706565 MS.gene40021:intron 30.0%
! AGCTTTATATAACTAGCCAT+AGG - chr1.4:59707035-59707054 None:intergenic 30.0%
! ATAGAAAAACATGGGTGTTT+TGG + chr1.4:59707790-59707809 MS.gene40021:intron 30.0%
! CCTATAAAGTTGTTTGGAAT+TGG + chr1.4:59707060-59707079 MS.gene40021:intron 30.0%
! GACATCCAATGTGTAAATTT+TGG + chr1.4:59709309-59709328 MS.gene40021:intron 30.0%
! GACTTTTCAGAAACATGTTA+AGG - chr1.4:59706741-59706760 None:intergenic 30.0%
! TGAATTATGGTTTTTCCTTC+AGG + chr1.4:59709100-59709119 MS.gene40021:intron 30.0%
!!! TATTTTTAGAGTGTGTGGAA+TGG + chr1.4:59707115-59707134 MS.gene40021:intron 30.0%
!!! TTTTGATTTTAGATCCTGCT+GGG + chr1.4:59706303-59706322 MS.gene40021:intron 30.0%
!!! TTTTTGATTTTAGATCCTGC+TGG + chr1.4:59706302-59706321 MS.gene40021:intron 30.0%
AAAACTAAAACTGCTTGTCG+GGG - chr1.4:59706787-59706806 None:intergenic 35.0%
AATCACTCCATGTTTCCATT+TGG + chr1.4:59709070-59709089 MS.gene40021:intron 35.0%
ATAAGAGCTACTAGACCATT+TGG + chr1.4:59708215-59708234 MS.gene40021:intron 35.0%
ATTGAAACCGAAGTCCAATT+TGG - chr1.4:59708172-59708191 None:intergenic 35.0%
ATTGATTGAACCAAAAACCC+TGG + chr1.4:59706998-59707017 MS.gene40021:intron 35.0%
ATTGGACTTCGGTTTCAATT+TGG + chr1.4:59708173-59708192 MS.gene40021:intron 35.0%
CAAAGATGCACCTAAAAACT+CGG - chr1.4:59706578-59706597 None:intergenic 35.0%
CATGGACCATAAATACAGAT+AGG - chr1.4:59708557-59708576 None:intergenic 35.0%
CATTCAGGTAATCAACCAAA+TGG - chr1.4:59708233-59708252 None:intergenic 35.0%
CTATCTGTATTTATGGTCCA+TGG + chr1.4:59708555-59708574 MS.gene40021:intron 35.0%
GAAAACTAAAACTGCTTGTC+GGG - chr1.4:59706788-59706807 None:intergenic 35.0%
GAGGAAAACAAACTAATGCT+AGG - chr1.4:59707378-59707397 None:intergenic 35.0%
TAGAACGTTTAGGTGTATGA+TGG + chr1.4:59706498-59706517 MS.gene40021:intron 35.0%
TATTAACAAGCACGCTTATG+TGG - chr1.4:59709459-59709478 None:intergenic 35.0%
TGGTTTCTTACAAGTTACCT+GGG - chr1.4:59708316-59708335 None:intergenic 35.0%
TTACAGATCGCAGAATATAG+CGG - chr1.4:59707603-59707622 None:intergenic 35.0%
TTCTGTATCTCAAGCTGAAA+AGG + chr1.4:59706328-59706347 MS.gene40021:CDS 35.0%
TTCTTTCCACCATATGCTTA+CGG + chr1.4:59709215-59709234 MS.gene40021:CDS 35.0%
TTGAAACCGAAGTCCAATTT+GGG - chr1.4:59708171-59708190 None:intergenic 35.0%
TTGGTTTCTTACAAGTTACC+TGG - chr1.4:59708317-59708336 None:intergenic 35.0%
TTTGGATTATTGGGATGGAT+GGG + chr1.4:59706635-59706654 MS.gene40021:intron 35.0%
! AAAAGTGAAACAGGCTGTTT+TGG - chr1.4:59707086-59707105 None:intergenic 35.0%
! AACTTGCACCTTAGTGTTTT+AGG + chr1.4:59708085-59708104 MS.gene40021:intron 35.0%
! ACTTGCACCTTAGTGTTTTT+AGG + chr1.4:59707840-59707859 MS.gene40021:intron 35.0%
! ACTTGCACCTTAGTGTTTTT+AGG - chr1.4:59707859-59707840 None:intergenic 35.0%
! AGGAAAGTATACAGAACATG+AGG - chr1.4:59709489-59709508 None:intergenic 35.0%
! ATGCATCCCTATGTAGTTTT+TGG - chr1.4:59709575-59709594 None:intergenic 35.0%
! CAATTCTGCAATCTTTTTGG+CGG + chr1.4:59706549-59706568 MS.gene40021:intron 35.0%
! GGAGTGTTAATTCATCAAAC+TGG + chr1.4:59708802-59708821 MS.gene40021:intron 35.0%
! GTTTGGCCTAAAGTTTTCTT+TGG - chr1.4:59708507-59708526 None:intergenic 35.0%
! TAAGCATATGGTGGAAAGAA+TGG - chr1.4:59709215-59709234 None:intergenic 35.0%
! TGTGTGTTCAAGATTGATTC+TGG + chr1.4:59708696-59708715 MS.gene40021:intron 35.0%
!! AGTTTGTTTTCCTCTTGGAA+GGG + chr1.4:59707384-59707403 MS.gene40021:intron 35.0%
!! ATGTTTTCAGGATCACATTC+AGG - chr1.4:59708248-59708267 None:intergenic 35.0%
!! GATCGTTGTTTTCAACTACT+TGG - chr1.4:59706890-59706909 None:intergenic 35.0%
!! TTTCAACTACTTGGTGCATA+TGG - chr1.4:59706881-59706900 None:intergenic 35.0%
!!! ATTGAGCATGGTTTTGTCAA+AGG + chr1.4:59707293-59707312 MS.gene40021:intron 35.0%
!!! GCATTAGTTTGTTTTCCTCT+TGG + chr1.4:59707379-59707398 MS.gene40021:intron 35.0%
!!! TAGTTTGTTTTCCTCTTGGA+AGG + chr1.4:59707383-59707402 MS.gene40021:intron 35.0%
AAATGCTGTTGGACTTCTTC+AGG - chr1.4:59708865-59708884 None:intergenic 40.0%
AAGCATTACCATGCAGTACA+GGG - chr1.4:59708430-59708449 None:intergenic 40.0%
AGCTAAGGTTGAGAAAGAGA+TGG + chr1.4:59706142-59706161 MS.gene40021:CDS 40.0%
AGTGCTCAAGTAGAACGTTT+AGG + chr1.4:59706488-59706507 MS.gene40021:intron 40.0%
ATAGCTTACCCGTAAGCATA+TGG - chr1.4:59709227-59709246 None:intergenic 40.0%
CTGCACGTGATTGACTAATA+CGG + chr1.4:59706854-59706873 MS.gene40021:intron 40.0%
GACAAATTTGGTCAACCGAA+AGG + chr1.4:59708925-59708944 MS.gene40021:CDS 40.0%
GCAAAACGTACAAATGTTCC+TGG + chr1.4:59709128-59709147 MS.gene40021:CDS 40.0%
GCTAAGGTTGAGAAAGAGAT+GGG + chr1.4:59706143-59706162 MS.gene40021:CDS 40.0%
GCTATATCACTATCGCATAG+CGG + chr1.4:59707473-59707492 MS.gene40021:intron 40.0%
GGGAGACCAAAGAAAACTTT+AGG + chr1.4:59708498-59708517 MS.gene40021:intron 40.0%
GTTTGGATTATTGGGATGGA+TGG + chr1.4:59706634-59706653 MS.gene40021:intron 40.0%
TCTTTCCACCATATGCTTAC+GGG + chr1.4:59709216-59709235 MS.gene40021:CDS 40.0%
TGCACGTGATTGACTAATAC+GGG + chr1.4:59706855-59706874 MS.gene40021:intron 40.0%
TGTATCTCAAGCTGAAAAGG+AGG + chr1.4:59706331-59706350 MS.gene40021:CDS 40.0%
TTAGAACATTTGGCCCCAAT+AGG + chr1.4:59706949-59706968 MS.gene40021:intron 40.0%
TTATGGTCCATGGCAGAATA+TGG + chr1.4:59708565-59708584 MS.gene40021:intron 40.0%
TTGAACCAAAAACCCTGGTA+TGG + chr1.4:59707003-59707022 MS.gene40021:intron 40.0%
TTGGAAGGGACATGTTATCA+GGG + chr1.4:59707398-59707417 MS.gene40021:intron 40.0%
! AAAGCATTACCATGCAGTAC+AGG - chr1.4:59708431-59708450 None:intergenic 40.0%
! CCTTGCAAGTGTACTTTTGT+GGG + chr1.4:59709506-59709525 MS.gene40021:intron 40.0%
! TCCTTGCAAGTGTACTTTTG+TGG + chr1.4:59709505-59709524 MS.gene40021:intron 40.0%
! TGTCGTTTGATCCATGTAGT+CGG + chr1.4:59708588-59708607 MS.gene40021:intron 40.0%
!! GGGCTGAATGTTCTAGAAAA+GGG - chr1.4:59706767-59706786 None:intergenic 40.0%
!! TACCAAAGCTTTTTCCCACA+AGG - chr1.4:59708619-59708638 None:intergenic 40.0%
!! TGCACCTTAGTGTTTTAGGT+GGG + chr1.4:59708089-59708108 MS.gene40021:intron 40.0%
!! TTGCACCTTAGTGTTTTAGG+TGG + chr1.4:59708088-59708107 MS.gene40021:intron 40.0%
!!! GCACCTTAGTGTTTTTAGGT+GGG + chr1.4:59707844-59707863 MS.gene40021:intron 40.0%
!!! GCACCTTAGTGTTTTTAGGT+GGG - chr1.4:59707863-59707844 None:intergenic 40.0%
!!! TGCACCTTAGTGTTTTTAGG+TGG + chr1.4:59707843-59707862 MS.gene40021:intron 40.0%
!!! TGCACCTTAGTGTTTTTAGG+TGG - chr1.4:59707862-59707843 None:intergenic 40.0%
AACGACACCATATTCTGCCA+TGG - chr1.4:59708575-59708594 None:intergenic 45.0%
AAGAATGGTGCAGGCATGAA+AGG - chr1.4:59709200-59709219 None:intergenic 45.0%
ACCAAAAACCCTGGTATGGT+AGG + chr1.4:59707007-59707026 MS.gene40021:intron 45.0%
AGTGTGTGGAATGGTTGAGA+TGG + chr1.4:59707124-59707143 MS.gene40021:intron 45.0%
CACAGGACTGAAAATGCTGT+TGG - chr1.4:59708876-59708895 None:intergenic 45.0%
CACCTTGTGGGAAAAAGCTT+TGG + chr1.4:59708614-59708633 MS.gene40021:intron 45.0%
CATAGGTACCTACCATACCA+GGG - chr1.4:59707018-59707037 None:intergenic 45.0%
CTTGGAAGGGACATGTTATC+AGG + chr1.4:59707397-59707416 MS.gene40021:intron 45.0%
GAATGGTTGAGATGGGAAAG+AGG + chr1.4:59707132-59707151 MS.gene40021:intron 45.0%
GAGATGGGAAAGAGGTTGTA+TGG + chr1.4:59707140-59707159 MS.gene40021:intron 45.0%
GATAACATGTCCCTTCCAAG+AGG - chr1.4:59707397-59707416 None:intergenic 45.0%
GATGCTCGATCGATCTATGT+TGG + chr1.4:59706359-59706378 MS.gene40021:CDS 45.0%
GCACCCACCTAAAAACACTA+AGG + chr1.4:59707650-59707669 MS.gene40021:intron 45.0%
GCACCCACCTAAAAACACTA+AGG - chr1.4:59707669-59707650 None:intergenic 45.0%
GCTGTGCTATAGCATTGTTG+CGG + chr1.4:59707565-59707584 MS.gene40021:intron 45.0%
GGTGGGTGCAAGTTAACAAA+TGG - chr1.4:59707639-59707658 None:intergenic 45.0%
GTACATGTAGCCAGTTGGTT+TGG + chr1.4:59707243-59707262 MS.gene40021:intron 45.0%
GTGTGTGGAATGGTTGAGAT+GGG + chr1.4:59707125-59707144 MS.gene40021:intron 45.0%
GTGTTGTACATGTAGCCAGT+TGG + chr1.4:59707238-59707257 MS.gene40021:intron 45.0%
GTTCCTGGATTGAAGCAGTA+CGG + chr1.4:59709143-59709162 MS.gene40021:CDS 45.0%
TCAAGCTGAAAAGGAGGAAG+TGG + chr1.4:59706337-59706356 MS.gene40021:CDS 45.0%
TCTTCGCGAAATGCAAGCTA+AGG + chr1.4:59706127-59706146 MS.gene40021:CDS 45.0%
TGCACCCACCTAAAACACTA+AGG - chr1.4:59708096-59708115 None:intergenic 45.0%
! ACCTACCATACCAGGGTTTT+TGG - chr1.4:59707011-59707030 None:intergenic 45.0%
! CAACAGCATTTTCAGTCCTG+TGG + chr1.4:59708874-59708893 MS.gene40021:CDS 45.0%
! CAAGTGTACTTTTGTGGGCA+GGG + chr1.4:59709511-59709530 MS.gene40021:intron 45.0%
! CCCACAAAAGTACACTTGCA+AGG - chr1.4:59709509-59709528 None:intergenic 45.0%
! TACGTTTTGCAGACACCTGA+AGG - chr1.4:59709118-59709137 None:intergenic 45.0%
! TATGGTGGAAAGAATGGTGC+AGG - chr1.4:59709209-59709228 None:intergenic 45.0%
! TCAGTTAGTGTTGTTGCTGC+AGG - chr1.4:59709637-59709656 None:intergenic 45.0%
! TTGGCGGTTTCCGAGTTTTT+AGG + chr1.4:59706565-59706584 MS.gene40021:intron 45.0%
!! CAAAGCTTTTTCCCACAAGG+TGG - chr1.4:59708616-59708635 None:intergenic 45.0%
!! GGGGCTGAATGTTCTAGAAA+AGG - chr1.4:59706768-59706787 None:intergenic 45.0%
!! TGTAGCCAGTTGGTTTGGTT+TGG + chr1.4:59707248-59707267 MS.gene40021:intron 45.0%
!!! TAAACTTTATTTTAATTAAA+AGG + chr1.4:59707730-59707749 MS.gene40021:intron 5.0%
ACAAGGTGGAACCGACTACA+TGG - chr1.4:59708602-59708621 None:intergenic 50.0%
AGGTGGGTGCAAGTTAACAG+TGG - chr1.4:59708124-59708105 None:intergenic 50.0%
ATGCAGTACAGGGCTGATGA+AGG - chr1.4:59708420-59708439 None:intergenic 50.0%
CCATAGGTACCTACCATACC+AGG - chr1.4:59707019-59707038 None:intergenic 50.0%
CCTGGTATGGTAGGTACCTA+TGG + chr1.4:59707016-59707035 MS.gene40021:intron 50.0%
CTTCCGTACTGCTTCAATCC+AGG - chr1.4:59709149-59709168 None:intergenic 50.0%
GAAGAGGCTGAAAGAGATCG+AGG + chr1.4:59706091-59706110 MS.gene40021:CDS 50.0%
GACTCTGTTCACAGTACCAC+AGG - chr1.4:59708893-59708912 None:intergenic 50.0%
GCTTACCCGTAAGCATATGG+TGG - chr1.4:59709224-59709243 None:intergenic 50.0%
GGTGGGTGCAAGTTAACAGT+GGG - chr1.4:59707885-59707904 None:intergenic 50.0%
GTGGGTGCAAGTTAACAGTG+GGG - chr1.4:59707884-59707903 None:intergenic 50.0%
GTGTGTGTGTGTGTGTGTGT+GGG - chr1.4:59708130-59708149 None:intergenic 50.0%
TCGCTCCAAACCAAACCAAC+TGG - chr1.4:59707256-59707275 None:intergenic 50.0%
TGAGATACAGAAGACCCAGC+AGG - chr1.4:59706320-59706339 None:intergenic 50.0%
TGGGTGCAAGTTAACAGTGG+GGG - chr1.4:59707883-59707902 None:intergenic 50.0%
TGTGTGTGTGTGTGTGTGTG+GGG - chr1.4:59708129-59708148 None:intergenic 50.0%
TGTGTGTGTGTGTGTGTGTG+TGG - chr1.4:59708129-59708148 None:intergenic 50.0%
TTCATCAGCCCTGTACTGCA+TGG + chr1.4:59708419-59708438 MS.gene40021:intron 50.0%
! AAAGAGATGGGCGCTGTTCA+AGG + chr1.4:59706155-59706174 MS.gene40021:CDS 50.0%
! ATGTAGTCGGTTCCACCTTG+TGG + chr1.4:59708601-59708620 MS.gene40021:intron 50.0%
! GCAAGTGTACTTTTGTGGGC+AGG + chr1.4:59709510-59709529 MS.gene40021:intron 50.0%
! TGTAGTCGGTTCCACCTTGT+GGG + chr1.4:59708602-59708621 MS.gene40021:intron 50.0%
!! GTTTGGTTTGGAGCGAGTCT+GGG + chr1.4:59707260-59707279 MS.gene40021:intron 50.0%
ATTGCATGGCCGACAGCTGA+AGG + chr1.4:59709014-59709033 MS.gene40021:CDS 55.0%
CAGTACGGAAGAAGACCTGC+TGG + chr1.4:59709158-59709177 MS.gene40021:CDS 55.0%
GTGTGTGTGTGTGTGTGTGG+GGG - chr1.4:59708128-59708147 None:intergenic 55.0%
!! AGAAGACCTGCTGGTTTCCG+CGG + chr1.4:59709167-59709186 MS.gene40021:CDS 55.0%
!! GGTTTGGTTTGGAGCGAGTC+TGG + chr1.4:59707259-59707278 MS.gene40021:intron 55.0%
GCATGAAAGGCCTCCTACCG+CGG - chr1.4:59709187-59709206 None:intergenic 60.0%
CTCCTACCGCGGAAACCAGC+AGG - chr1.4:59709176-59709195 None:intergenic 65.0%
!! CTGCTGGTTTCCGCGGTAGG+AGG + chr1.4:59709174-59709193 MS.gene40021:CDS 65.0%
!! GACCTGCTGGTTTCCGCGGT+AGG + chr1.4:59709171-59709190 MS.gene40021:CDS 65.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 59706086 59709656 59706086 ID=MS.gene40021
chr1.4 mRNA 59706086 59709656 59706086 ID=MS.gene40021.t1;Parent=MS.gene40021
chr1.4 exon 59706086 59706176 59706086 ID=MS.gene40021.t1.exon1;Parent=MS.gene40021.t1
chr1.4 CDS 59706086 59706176 59706086 ID=cds.MS.gene40021.t1;Parent=MS.gene40021.t1
chr1.4 exon 59706315 59706385 59706315 ID=MS.gene40021.t1.exon2;Parent=MS.gene40021.t1
chr1.4 CDS 59706315 59706385 59706315 ID=cds.MS.gene40021.t1;Parent=MS.gene40021.t1
chr1.4 exon 59708844 59709035 59708844 ID=MS.gene40021.t1.exon3;Parent=MS.gene40021.t1
chr1.4 CDS 59708844 59709035 59708844 ID=cds.MS.gene40021.t1;Parent=MS.gene40021.t1
chr1.4 exon 59709122 59709237 59709122 ID=MS.gene40021.t1.exon4;Parent=MS.gene40021.t1
chr1.4 CDS 59709122 59709237 59709122 ID=cds.MS.gene40021.t1;Parent=MS.gene40021.t1
chr1.4 exon 59709641 59709656 59709641 ID=MS.gene40021.t1.exon5;Parent=MS.gene40021.t1
chr1.4 CDS 59709641 59709656 59709641 ID=cds.MS.gene40021.t1;Parent=MS.gene40021.t1
Gene Sequence

>MS.gene40021

ATGAAGAAGAGGCTGAAAGAGATCGAGGAAGAAGCTAGTGCTCTTCGCGAAATGCAAGCTAAGGTTGAGAAAGAGATGGGCGCTGTTCAAGGTTTCATTCTTATTATGCTTTTCAATTTTCGAAGATTTGATAAATTTTTGTTATTGATTCATTGTTTGTTTAATTCAGATCTGTTTATCATTTGGCTCAATTATTGGTTTTTTAAGCTTTTTGAATTTTTGATTTTAGATCCTGCTGGGTCTTCTGTATCTCAAGCTGAAAAGGAGGAAGTGGATGCTCGATCGATCTATGTTGGTAATGTGAGTTTTGCATACCTTTGATTTTATTTATGATTAATTCATATTTTAGTTTATGTTGTTACTCTGTTTTATATGTTTTATATCTGAAGTATGTTATGTGCAAGTGCTCAAGTAGAACGTTTAGGTGTATGATGGTTTTTGCTTATATATGATTTTTGTTACTCAATTCTGCAATCTTTTTGGCGGTTTCCGAGTTTTTAGGTGCATCTTTGTTGCTTACAGTTTGAATTTTAGGTTAAGAATTTAATGTTTGGATTATTGGGATGGATGGGATGTAAATCGAAATAATAAATGTTGATTTAATTTTTTTTGGGGGAAGTCAGTCGCACTGCACGTTGAAAGCGACAACAATCCTTAACATGTTTCTGAAAAGTCAAACCCTTTTCTAGAACATTCAGCCCCGACAAGCAGTTTTAGTTTTCAAACAATAAATGTCGATTTTTGTTTTTTTGGGAGACGTCAGTCGCACTGCACGTGATTGACTAATACGGGCCATATGCACCAAGTAGTTGAAAACAACGATCATGAACGCGTTTACGAAACGTTAGCCCTCCTATTAGAATTTAGAACATTTGGCCCCAATAGGCAGTTTTAGTTTTGAAGTCAAAAGAGATTGATTGAACCAAAAACCCTGGTATGGTAGGTACCTATGGCTAGTTATATAAAGCTAAGCACCTATAAAGTTGTTTGGAATTGGCCAAAACAGCCTGTTTCACTTTTCATTAATTTTATTTTTAGAGTGTGTGGAATGGTTGAGATGGGAAAGAGGTTGTATGGTCTACTTTACAAAGTAGTCATTGAGCCTTCCATTTTTTAAAAAAACTATCTTGAAAAGGAGAGCATTTGATGTGTGTGTTGTACATGTAGCCAGTTGGTTTGGTTTGGAGCGAGTCTGGGTAATTTAGAAATTGAGCATGGTTTTGTCAAAGGTCAAAACTCTTTGTTCAAATATTTTCTGATATCATGTCCTTTAAAGGTGTTTTAGTTTCCCTAGCATTAGTTTGTTTTCCTCTTGGAAGGGACATGTTATCAGGGTGATCTTCAAAGCTCTGCCGAATTAAGTGTTGTTAAATAGCAGTATAGCGGTGCTATATCACTATCGCATAGCGGAATATGAACTAATCACTATTGTTCTGTAATACACAATATGATATGAAAGATTATGAAATAGCGGCTATAGCTGTGCTATAGCATTGTTGCGGAATTTGAACAAACCGCTATATTCTGCGATCTGTAATTGACAACACATTCCATTTGTTAACTTGCACCCACCTAAAAACACTAAGGTGCAAGTTAACAAGCTGCACCTACTTGTACTTTACTAAAACACCCTTTTGTCTCTATTAAACTTTATTTTAATTAAAAGGACATTTTTGTAAATAGCATAAATAATATTTGTTTATAATAGAAAAACATGGGTGTTTTGGTAAATAACTAGTAGGTGCAGCTTGTTGACTTGCACCTTAGTGTTTTTAGGTGGGTGCAAGTTAACAACCCCCACTGTTAACTTGCACCCACCTAAAAACACTAAGGTGCAAGTTAACAAGCTGCACCTACTTGTACTTTACTAAAACACCCTTTTGTCTCTATTAAACTTTATTTTAATTAAAAGGACATTTTTGTAAATAGCATAAATAATATTTGTTTATAATAGAAAAACATGGGTGTTTTGGTTAATAACTAGTAGGTGCAGCTTGTTAACTTGCACCTTAGTGTTTTAGGTGGGTGCAAGTTAACAGCCCCCACACACACACACACACACACACACACACATATATATAACCCAAATTGGACTTCGGTTTCAATTTGGAAAGCCATTAAAACTAACAATAAGAGCTACTAGACCATTTGGTTGATTACCTGAATGTGATCCTGAAAACATATCTGACTTAATTCCAGATCCATATCATCCAAATTTTTTAAAATACCCAGGTAACTTGTAAGAAACCAAATATTTACATGTTTATAATGCTGCAAAACCGATCATTTGTAAATGTTATGGTAAACTTCTCATAACTGGACTGCTTGTATCCTTCATCAGCCCTGTACTGCATGGTAATGCTTTTAAGCACTTAAATTTCATGGGAGTATACTAAAATAGTTAGAGGAATAGGGAGACCAAAGAAAACTTTAGGCCAAACCATCTAGATAGATCTAAAATTATATGGCCTATCTGTATTTATGGTCCATGGCAGAATATGGTGTCGTTTGATCCATGTAGTCGGTTCCACCTTGTGGGAAAAAGCTTTGGTAGTTGTAATCTTTGTCTTCTTGTCTCTTGCATCACTCAAAAATCACATAAGCATTTGATGTGTGTTCAAGATTGATTCTGGTGACTCACCCTCACATATCTAATGCATTTTTTAGTCATTTTATGCGTAATTTTCCATGTCATTTAAATCTCAAAAACTTCAACGGAGTGTTAATTCATCAAACTGGTTTCTAAAATATGAATCAGGTTGACTATGCATGCACACCTGAAGAAGTCCAACAGCATTTTCAGTCCTGTGGTACTGTGAACAGAGTCACAATATTGACAGACAAATTTGGTCAACCGAAAGGATTTGCTTATGTAGAATTTGTTGAAGCTGATGCTGTTCAGAATGCTCTCATTTTAAATGAAACTGAATTGCATGGCCGACAGCTGAAGGTATTTTTATCTGATTATATGTGTAAATTCAACTAATCACTCCATGTTTCCATTTGGTTTTAATTGAATTATGGTTTTTCCTTCAGGTGTCTGCAAAACGTACAAATGTTCCTGGATTGAAGCAGTACGGAAGAAGACCTGCTGGTTTCCGCGGTAGGAGGCCTTTCATGCCTGCACCATTCTTTCCACCATATGCTTACGGGTAAGCTATCATTAGAAACTGAATAAAATAAAATCTTTACCCAGAATTCATTGTTGCTTTTGTTTCTTTATGACATCCAATGTGTAAATTTTGGCATCTTAAAGAGTAAATATGTTTACTTTTTGTGTAAATGGTGCTTCACATCGCGACTGCGATATTTAAATAAAACTAGTGGATGGATTTGCTTTTGTGATAGTAATACATCTAATGATAGGTAACCACATAAGCGTGCTTGTTAATATAGTGAACCTCATGTTCTGTATACTTTCCTTGCAAGTGTACTTTTGTGGGCAGGGTAATACAGATATTGAGAATTACACTTATATTTGTATAACCAAAAACTACATAGGGATGCATGCTATGCCAACAAGTATATATACAGTTTTGGTATAATTGCCTGCAGCAACAACACTAACTGA

Protein sequence

>MS.gene40021.t1

MKKRLKEIEEEASALREMQAKVEKEMGAVQDPAGSSVSQAEKEEVDARSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEADAVQNALILNETELHGRQLKVSAKRTNVPGLKQYGRRPAGFRGRRPFMPAPFFPPYAYGNNTN