Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41587.t1 | XP_013460360.1 | 96.9 | 226 | 7 | 0 | 1 | 226 | 1 | 226 | 2.60E-117 | 431.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41587.t1 | Q96S44 | 49.1 | 220 | 109 | 2 | 10 | 226 | 34 | 253 | 8.2e-48 | 191.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41587.t1 | I3SWE5 | 96.9 | 226 | 7 | 0 | 1 | 226 | 1 | 226 | 1.9e-117 | 431.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050916 | MS.gene41587 | 0.80417 | 2.46E-49 | -1.69E-46 |
| MS.gene06001 | MS.gene41587 | 0.806172 | 9.36E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene030686 | MS.gene41587 | PPI |
| MS.gene28454 | MS.gene41587 | PPI |
| MS.gene41587 | MS.gene70303 | PPI |
| MS.gene41587 | MS.gene003175 | PPI |
| MS.gene030685 | MS.gene41587 | PPI |
| MS.gene048301 | MS.gene41587 | PPI |
| MS.gene030707 | MS.gene41587 | PPI |
| MS.gene02854 | MS.gene41587 | PPI |
| MS.gene58136 | MS.gene41587 | PPI |
| MS.gene031682 | MS.gene41587 | PPI |
| MS.gene28161 | MS.gene41587 | PPI |
| MS.gene58134 | MS.gene41587 | PPI |
| MS.gene006626 | MS.gene41587 | PPI |
| MS.gene045570 | MS.gene41587 | PPI |
| MS.gene41587 | MS.gene70283 | PPI |
| MS.gene41587 | MS.gene70282 | PPI |
| MS.gene28183 | MS.gene41587 | PPI |
| MS.gene41587 | MS.gene58159 | PPI |
| MS.gene01984 | MS.gene41587 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41587.t1 | MTR_3g465790 | 96.903 | 226 | 7 | 0 | 1 | 226 | 1 | 226 | 6.10e-165 | 454 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41587.t1 | AT5G26110 | 78.761 | 226 | 48 | 0 | 1 | 226 | 1 | 226 | 2.81e-134 | 377 |
| MS.gene41587.t1 | AT5G26110 | 78.761 | 226 | 48 | 0 | 1 | 226 | 1 | 226 | 2.81e-134 | 377 |
| MS.gene41587.t1 | AT5G26110 | 79.012 | 162 | 34 | 0 | 65 | 226 | 2 | 163 | 5.57e-95 | 275 |
| MS.gene41587.t1 | AT1G08120 | 73.684 | 57 | 15 | 0 | 1 | 57 | 5 | 61 | 1.97e-22 | 87.8 |
Find 43 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGTACAGACATCCGATTT+TGG | 0.315543 | 3.1:-50191590 | MS.gene41587:CDS |
| AAAGATGTATTTCTTGAATT+CGG | 0.327087 | 3.1:-50191013 | MS.gene41587:CDS |
| CACGATGGTGGTCTTGTTCA+TGG | 0.374963 | 3.1:-50190920 | MS.gene41587:CDS |
| GGCAAGATTGCATCTCAAAT+TGG | 0.384705 | 3.1:-50190962 | MS.gene41587:CDS |
| CAACCAAGGCAAGGCGACTT+GGG | 0.419060 | 3.1:-50191114 | MS.gene41587:CDS |
| GTGTAGGTTCTTATTGACTT+TGG | 0.438221 | 3.1:-50190740 | MS.gene41587:intron |
| ACAACCAAGGCAAGGCGACT+TGG | 0.438223 | 3.1:-50191115 | MS.gene41587:CDS |
| GTCAACTTAGCATCCAAAAT+CGG | 0.456518 | 3.1:+50191577 | None:intergenic |
| AAATCGACGGCTTTATCTTC+TGG | 0.462118 | 3.1:+50190695 | None:intergenic |
| ACCACTGTTTCGATGATTTG+CGG | 0.463118 | 3.1:+50189029 | None:intergenic |
| AACCCCAAGTCGCCTTGCCT+TGG | 0.476565 | 3.1:+50191111 | None:intergenic |
| AAAGAATGATACTGATCAGT+TGG | 0.526434 | 3.1:-50190870 | MS.gene41587:intron |
| TTAACATTTGAATTTGTCGA+TGG | 0.536270 | 3.1:-50191046 | MS.gene41587:CDS |
| TACCCCTGTGTTATATGCTG+TGG | 0.540309 | 3.1:-50191086 | MS.gene41587:CDS |
| GTTTCGATGCATTCTTCATG+TGG | 0.542927 | 3.1:-50190650 | MS.gene41587:CDS |
| AGAAATACATCTTTGACTGA+AGG | 0.543009 | 3.1:+50191022 | None:intergenic |
| ATGAAGAATGCATCGAAACA+AGG | 0.554852 | 3.1:+50190654 | None:intergenic |
| GTCTGCAAGCTTGTTCATTG+TGG | 0.559060 | 3.1:+50189003 | None:intergenic |
| TTCTAAAACATACAAATCGA+CGG | 0.561624 | 3.1:+50190682 | None:intergenic |
| AATGTTAAAGTGTGCAACAC+AGG | 0.565875 | 3.1:+50191061 | None:intergenic |
| TTTCTTGAATTCGGATCATG+TGG | 0.569490 | 3.1:-50191004 | MS.gene41587:CDS |
| GGACGAAAGAGGACCATGGT+TGG | 0.583853 | 3.1:-50188885 | MS.gene41587:CDS |
| GGCATCAATGAAGAGCGGTT+AGG | 0.593530 | 3.1:-50190983 | MS.gene41587:CDS |
| CGAGGTGCACAACCAAGGCA+AGG | 0.594894 | 3.1:-50191123 | MS.gene41587:CDS |
| AACCAAGGCAAGGCGACTTG+GGG | 0.602601 | 3.1:-50191113 | MS.gene41587:CDS |
| TGCGACAAAGAGGACGAAAG+AGG | 0.603308 | 3.1:-50188896 | MS.gene41587:CDS |
| TTGTTTGATGAGAATGAGAG+AGG | 0.606756 | 3.1:+50192081 | None:intergenic |
| GGATCCACAGCATATAACAC+AGG | 0.609862 | 3.1:+50191082 | None:intergenic |
| TGAAGAATGCATCGAAACAA+GGG | 0.628508 | 3.1:+50190655 | None:intergenic |
| GGAGGCGAGGTGCACAACCA+AGG | 0.637554 | 3.1:-50191128 | MS.gene41587:CDS |
| GATCCACAGCATATAACACA+GGG | 0.645198 | 3.1:+50191083 | None:intergenic |
| CAACTTGTAGTGCGACAAAG+AGG | 0.647624 | 3.1:-50188906 | MS.gene41587:intron |
| ACAATGAACAAGCTTGCAGA+CGG | 0.653580 | 3.1:-50189001 | MS.gene41587:intron |
| AACTCAGAATTATCCAACCA+TGG | 0.654117 | 3.1:+50188872 | None:intergenic |
| ATTGCAAAGTTACACGATGG+TGG | 0.654578 | 3.1:-50190932 | MS.gene41587:CDS |
| GCATTCTTCATGTGGTAATG+TGG | 0.655251 | 3.1:-50190642 | MS.gene41587:intron |
| TCTCTCATTCTCATCAAACA+AGG | 0.656080 | 3.1:-50192079 | MS.gene41587:CDS |
| GACACTCAAGCGCTTAAATG+CGG | 0.662510 | 3.1:-50191557 | MS.gene41587:intron |
| ACCGCAAATCATCGAAACAG+TGG | 0.688110 | 3.1:-50189030 | MS.gene41587:CDS |
| CATGTGGCATCAATGAAGAG+CGG | 0.710732 | 3.1:-50190988 | MS.gene41587:CDS |
| AAGAGGACGAAAGAGGACCA+TGG | 0.717008 | 3.1:-50188889 | MS.gene41587:CDS |
| GTAATTGCAAAGTTACACGA+TGG | 0.807657 | 3.1:-50190935 | MS.gene41587:CDS |
| ATCCACAGCATATAACACAG+GGG | 0.823142 | 3.1:+50191084 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATTGATTTTTTACATAA+TGG | + | chr3.1:50188997-50189016 | None:intergenic | 10.0% |
| !!! | AAATTGATTTTTTACATAAT+GGG | + | chr3.1:50188996-50189015 | None:intergenic | 10.0% |
| !!! | AATATTTATTACTTTTACTT+AGG | - | chr3.1:50190174-50190193 | MS.gene41587:intron | 10.0% |
| !!! | TTAATTTAAAATTGATTCAT+GGG | - | chr3.1:50189047-50189066 | MS.gene41587:CDS | 10.0% |
| !!! | TTTTTATATTTGATTAAGTT+TGG | - | chr3.1:50189482-50189501 | MS.gene41587:intron | 10.0% |
| !! | AAGAATAAAAACTAAGTATT+TGG | + | chr3.1:50191296-50191315 | None:intergenic | 15.0% |
| !! | AATTTCTAATAGTATAAAAC+AGG | + | chr3.1:50190615-50190634 | None:intergenic | 15.0% |
| !! | ATATATATATATAGACACAT+AGG | - | chr3.1:50190806-50190825 | MS.gene41587:intron | 15.0% |
| !! | ATATATATATATATATCCCA+TGG | + | chr3.1:50190750-50190769 | None:intergenic | 15.0% |
| !! | ATCTGTTATAATTTAATCTA+AGG | + | chr3.1:50191458-50191477 | None:intergenic | 15.0% |
| !! | TATATATATATAGACACATA+GGG | - | chr3.1:50190807-50190826 | MS.gene41587:intron | 15.0% |
| !! | TTAGATTAAATTATAACAGA+TGG | - | chr3.1:50191457-50191476 | MS.gene41587:intron | 15.0% |
| !! | TTAGATTGAATTAAAATAGA+TGG | + | chr3.1:50190885-50190904 | None:intergenic | 15.0% |
| !!! | ATCTATTTTAATTCAATCTA+AGG | - | chr3.1:50190884-50190903 | MS.gene41587:CDS | 15.0% |
| !!! | GAATCAATTTTAAATTAACA+AGG | + | chr3.1:50189045-50189064 | None:intergenic | 15.0% |
| !!! | GTTAATTTAAAATTGATTCA+TGG | - | chr3.1:50189046-50189065 | MS.gene41587:CDS | 15.0% |
| !! | AAAGATGTATTTCTTGAATT+CGG | - | chr3.1:50189977-50189996 | MS.gene41587:intron | 20.0% |
| !! | ATTGATTATTGAAATTTGTC+TGG | - | chr3.1:50191911-50191930 | MS.gene41587:intron | 20.0% |
| !! | CAAATTAAATGTGATTTACT+TGG | + | chr3.1:50191165-50191184 | None:intergenic | 20.0% |
| !! | CAATACTAAACAAAATTAGA+TGG | + | chr3.1:50192024-50192043 | None:intergenic | 20.0% |
| !! | TAAAATAGATGGTTAAGATT+TGG | + | chr3.1:50190874-50190893 | None:intergenic | 20.0% |
| !! | TAAGTTTAATTCACACTTAT+TGG | - | chr3.1:50188945-50188964 | MS.gene41587:intron | 20.0% |
| !! | TATTCAACACTATAACAATT+AGG | + | chr3.1:50190402-50190421 | None:intergenic | 20.0% |
| !! | TCACAAATAGTAAAAAATAG+CGG | + | chr3.1:50189241-50189260 | None:intergenic | 20.0% |
| !! | TGTTATATACAGGTAAATAA+GGG | + | chr3.1:50191786-50191805 | None:intergenic | 20.0% |
| !! | TTGTTATATACAGGTAAATA+AGG | + | chr3.1:50191787-50191806 | None:intergenic | 20.0% |
| !!! | AAAACTAAGTATTTGGAATA+TGG | + | chr3.1:50191289-50191308 | None:intergenic | 20.0% |
| !!! | AAATTTTGAACAAGAACTTT+AGG | - | chr3.1:50190664-50190683 | MS.gene41587:CDS | 20.0% |
| !!! | ATTATTTTCATAAGCTATCT+TGG | - | chr3.1:50189631-50189650 | MS.gene41587:intron | 20.0% |
| !!! | ATTTTAAACATCAATACCAT+GGG | - | chr3.1:50190731-50190750 | MS.gene41587:CDS | 20.0% |
| !!! | CATAATAATAAGAGTTTGTT+TGG | + | chr3.1:50189774-50189793 | None:intergenic | 20.0% |
| !!! | TATATACACCAAGTAATTTT+TGG | + | chr3.1:50190910-50190929 | None:intergenic | 20.0% |
| !!! | TTATCCTCTTAATGATTTTT+GGG | + | chr3.1:50190576-50190595 | None:intergenic | 20.0% |
| !!! | TTTATCCTCTTAATGATTTT+TGG | + | chr3.1:50190577-50190596 | None:intergenic | 20.0% |
| ! | AAAGTGACATATAATATGAG+AGG | + | chr3.1:50191692-50191711 | None:intergenic | 25.0% |
| ! | AAAGTTTCAATCTTTCATTG+TGG | - | chr3.1:50189078-50189097 | MS.gene41587:intron | 25.0% |
| ! | AAGTGACATATAATATGAGA+GGG | + | chr3.1:50191691-50191710 | None:intergenic | 25.0% |
| ! | AATAAGGGTGATATTGAAAA+TGG | + | chr3.1:50191771-50191790 | None:intergenic | 25.0% |
| ! | AATACTAAGGATATAACAAC+AGG | - | chr3.1:50190418-50190437 | MS.gene41587:intron | 25.0% |
| ! | AATATGCAATCAAGTTCATT+TGG | + | chr3.1:50191638-50191657 | None:intergenic | 25.0% |
| ! | ACTATAACAATTAGGACTAT+TGG | + | chr3.1:50190394-50190413 | None:intergenic | 25.0% |
| ! | ATACTAAGGATATAACAACA+GGG | - | chr3.1:50190419-50190438 | MS.gene41587:intron | 25.0% |
| ! | ATATCACTAGAATATCAAGA+AGG | - | chr3.1:50191736-50191755 | MS.gene41587:intron | 25.0% |
| ! | CTATAACAATTAGGACTATT+GGG | + | chr3.1:50190393-50190412 | None:intergenic | 25.0% |
| ! | CTCTCAATTCATTTAGAAAA+TGG | - | chr3.1:50191109-50191128 | MS.gene41587:CDS | 25.0% |
| ! | TAAACAGTCTTTATTGCTTT+CGG | + | chr3.1:50191554-50191573 | None:intergenic | 25.0% |
| ! | TACAAAATGTTGTCAAATAG+CGG | - | chr3.1:50189179-50189198 | MS.gene41587:intron | 25.0% |
| ! | TAGTGTCAACTTAAGAAAAT+GGG | - | chr3.1:50191059-50191078 | MS.gene41587:CDS | 25.0% |
| ! | TCAGTACAGAAACTATATTA+TGG | + | chr3.1:50191890-50191909 | None:intergenic | 25.0% |
| ! | TTAACATTTGAATTTGTCGA+TGG | - | chr3.1:50189944-50189963 | MS.gene41587:intron | 25.0% |
| ! | TTAGTGTCAACTTAAGAAAA+TGG | - | chr3.1:50191058-50191077 | MS.gene41587:CDS | 25.0% |
| ! | TTATATTCAAGTGTATCTAG+TGG | + | chr3.1:50189745-50189764 | None:intergenic | 25.0% |
| ! | TTTGAATTGTAAGCACTTTA+AGG | + | chr3.1:50191235-50191254 | None:intergenic | 25.0% |
| !! | AAAAAACTCAGGAATTTTGT+GGG | - | chr3.1:50191139-50191158 | MS.gene41587:intron | 25.0% |
| !! | CATTTTCTAAATGAATTGAG+AGG | + | chr3.1:50191111-50191130 | None:intergenic | 25.0% |
| !! | GATTTTAAACATCAATACCA+TGG | - | chr3.1:50190730-50190749 | MS.gene41587:CDS | 25.0% |
| !! | TAAAAAACTCAGGAATTTTG+TGG | - | chr3.1:50191138-50191157 | MS.gene41587:intron | 25.0% |
| !! | TATTTCGTCTTGTTATATAC+AGG | + | chr3.1:50191796-50191815 | None:intergenic | 25.0% |
| !! | TGTTATAGTGTTGAATACTA+AGG | - | chr3.1:50190405-50190424 | MS.gene41587:intron | 25.0% |
| !! | TTTTAACGATAGATAATGCA+AGG | - | chr3.1:50191817-50191836 | MS.gene41587:intron | 25.0% |
| !!! | AAATCTTTTTCATTCATCAC+CGG | - | chr3.1:50190961-50190980 | MS.gene41587:CDS | 25.0% |
| !!! | AGATTTGTTATCTCCAAAAA+AGG | - | chr3.1:50191399-50191418 | MS.gene41587:intron | 25.0% |
| !!! | ATACTCTCTATTTCCTTTTT+TGG | - | chr3.1:50190927-50190946 | MS.gene41587:CDS | 25.0% |
| !!! | ATATGTCACTTTTGTAATGT+CGG | - | chr3.1:50191700-50191719 | MS.gene41587:intron | 25.0% |
| !!! | ATTTGACTTACTTTTATCTC+TGG | + | chr3.1:50189591-50189610 | None:intergenic | 25.0% |
| !!! | TTCTAAAACATACAAATCGA+CGG | + | chr3.1:50190311-50190330 | None:intergenic | 25.0% |
| !!! | TTGCATATTTTTATCTGACA+AGG | - | chr3.1:50191649-50191668 | MS.gene41587:CDS | 25.0% |
| !!! | TTGTTTTGTTTCTCCAAAAA+AGG | + | chr3.1:50190943-50190962 | None:intergenic | 25.0% |
| !!! | TTTCTTAAGTTGACACTAAA+TGG | + | chr3.1:50191057-50191076 | None:intergenic | 25.0% |
| AAAGAATGATACTGATCAGT+TGG | - | chr3.1:50190120-50190139 | MS.gene41587:intron | 30.0% | |
| AGAAATACATCTTTGACTGA+AGG | + | chr3.1:50189971-50189990 | None:intergenic | 30.0% | |
| ATATATAGACACATAGGGAT+AGG | - | chr3.1:50190812-50190831 | MS.gene41587:intron | 30.0% | |
| ATCAAGTTCATTTGGTACAT+AGG | + | chr3.1:50191630-50191649 | None:intergenic | 30.0% | |
| ATCATCAGCATTAGTACAAA+TGG | + | chr3.1:50190713-50190732 | None:intergenic | 30.0% | |
| ATGGTTCGATTAAAAAACTC+AGG | - | chr3.1:50191128-50191147 | MS.gene41587:CDS | 30.0% | |
| CCTATATATGTATATGGGAT+AGG | + | chr3.1:50191531-50191550 | None:intergenic | 30.0% | |
| CCTATCCCATATACATATAT+AGG | - | chr3.1:50191528-50191547 | MS.gene41587:intron | 30.0% | |
| CTACAAGTTGTGAAAATGTA+CGG | + | chr3.1:50192074-50192093 | None:intergenic | 30.0% | |
| CTATTTGTGATTGACAATAC+TGG | - | chr3.1:50189251-50189270 | MS.gene41587:intron | 30.0% | |
| GAAGAAAGAAAGAAATGATC+CGG | + | chr3.1:50190983-50191002 | None:intergenic | 30.0% | |
| GCAATAAAGACTGTTTATAC+TGG | - | chr3.1:50191557-50191576 | MS.gene41587:intron | 30.0% | |
| GTCATTGATACATTGATGTA+AGG | - | chr3.1:50191320-50191339 | MS.gene41587:intron | 30.0% | |
| TCAAACTAAATTTGACACCA+TGG | + | chr3.1:50190849-50190868 | None:intergenic | 30.0% | |
| TGTATATAGTTGTGTCTGAT+TGG | - | chr3.1:50189798-50189817 | MS.gene41587:intron | 30.0% | |
| TTCGGCCTATATATGTATAT+GGG | + | chr3.1:50191536-50191555 | None:intergenic | 30.0% | |
| TTCTAAATGAATTGAGAGGA+TGG | + | chr3.1:50191107-50191126 | None:intergenic | 30.0% | |
| TTGAAATTTGTCTGGATAGA+TGG | - | chr3.1:50191919-50191938 | MS.gene41587:intron | 30.0% | |
| TTGACCCAAAAATCATTAAG+AGG | - | chr3.1:50190569-50190588 | MS.gene41587:intron | 30.0% | |
| TTTCGGCCTATATATGTATA+TGG | + | chr3.1:50191537-50191556 | None:intergenic | 30.0% | |
| TTTGTGAACTTGAAGGAAAT+TGG | - | chr3.1:50189275-50189294 | MS.gene41587:intron | 30.0% | |
| ! | AAGCTATCTTGGATAGATTT+TGG | - | chr3.1:50189642-50189661 | MS.gene41587:intron | 30.0% |
| ! | ATCTAAGGCCAAAAATTACT+TGG | - | chr3.1:50190899-50190918 | MS.gene41587:CDS | 30.0% |
| ! | GCATAACTGTTGGTTAATAA+TGG | + | chr3.1:50191604-50191623 | None:intergenic | 30.0% |
| ! | TTCATTGTGGTAATGTTGTT+AGG | - | chr3.1:50189091-50189110 | MS.gene41587:intron | 30.0% |
| !! | CAAAATTTAGTTTGACACCA+TGG | - | chr3.1:50191494-50191513 | MS.gene41587:intron | 30.0% |
| !! | TTTTATAGTTTGTGCACTCA+AGG | - | chr3.1:50190633-50190652 | MS.gene41587:intron | 30.0% |
| !!! | ATGCTCTCTATTTCCTTTTT+TGG | + | chr3.1:50191415-50191434 | None:intergenic | 30.0% |
| !!! | ATTTTAGTTCTCCAAGTTCA+AGG | - | chr3.1:50190485-50190504 | MS.gene41587:intron | 30.0% |
| !!! | GTTTTTGAGACTTCTTTTGT+GGG | - | chr3.1:50189344-50189363 | MS.gene41587:intron | 30.0% |
| AAAGTGTAAGACCTTGAACT+TGG | + | chr3.1:50190499-50190518 | None:intergenic | 35.0% | |
| AATGTTAAAGTGTGCAACAC+AGG | + | chr3.1:50189932-50189951 | None:intergenic | 35.0% | |
| AGTTCATTTGGTACATAGGA+AGG | + | chr3.1:50191626-50191645 | None:intergenic | 35.0% | |
| ATGAAGAATGCATCGAAACA+AGG | + | chr3.1:50190339-50190358 | None:intergenic | 35.0% | |
| CATATACACCAAGTCATTTC+TGG | - | chr3.1:50191432-50191451 | MS.gene41587:intron | 35.0% | |
| CTATTGGGAAAATGAGAAGT+TGG | + | chr3.1:50190378-50190397 | None:intergenic | 35.0% | |
| GACATATAATATGAGAGGGA+TGG | + | chr3.1:50191687-50191706 | None:intergenic | 35.0% | |
| GTAATTGCAAAGTTACACGA+TGG | - | chr3.1:50190055-50190074 | MS.gene41587:intron | 35.0% | |
| GTCAACTTAGCATCCAAAAT+CGG | + | chr3.1:50189416-50189435 | None:intergenic | 35.0% | |
| TATTATGGCAGAACAACTCT+TGG | + | chr3.1:50191875-50191894 | None:intergenic | 35.0% | |
| TCTCTCATTCTCATCAAACA+AGG | - | chr3.1:50188911-50188930 | MS.gene41587:intron | 35.0% | |
| TGAAGAATGCATCGAAACAA+GGG | + | chr3.1:50190338-50190357 | None:intergenic | 35.0% | |
| TTGTTTGATGAGAATGAGAG+AGG | + | chr3.1:50188912-50188931 | None:intergenic | 35.0% | |
| TTTCTTGAATTCGGATCATG+TGG | - | chr3.1:50189986-50190005 | MS.gene41587:intron | 35.0% | |
| ! | CTGTGATGTGTATTTTGTGT+AGG | - | chr3.1:50190234-50190253 | MS.gene41587:intron | 35.0% |
| ! | TTGTTCTGCCAATTGGATTT+TGG | - | chr3.1:50189835-50189854 | MS.gene41587:intron | 35.0% |
| !! | AGGGTCTTATTTGTCTGTTA+TGG | - | chr3.1:50190438-50190457 | MS.gene41587:intron | 35.0% |
| !! | GTGTAGGTTCTTATTGACTT+TGG | - | chr3.1:50190250-50190269 | MS.gene41587:intron | 35.0% |
| !! | TGATTAAGTTTGGCTCTGTT+TGG | - | chr3.1:50189492-50189511 | MS.gene41587:intron | 35.0% |
| !! | TGTCTTCTTGTTGTTGTAGA+GGG | - | chr3.1:50189322-50189341 | MS.gene41587:intron | 35.0% |
| !! | TTGTCTTCTTGTTGTTGTAG+AGG | - | chr3.1:50189321-50189340 | MS.gene41587:intron | 35.0% |
| !!! | GGTTTTTGAGACTTCTTTTG+TGG | - | chr3.1:50189343-50189362 | MS.gene41587:intron | 35.0% |
| !!! | TACTGGTTTTGTGAACTTGA+AGG | - | chr3.1:50189268-50189287 | MS.gene41587:intron | 35.0% |
| ACAATGAACAAGCTTGCAGA+CGG | - | chr3.1:50191989-50192008 | MS.gene41587:intron | 40.0% | |
| ACCACTGTTTCGATGATTTG+CGG | + | chr3.1:50191964-50191983 | None:intergenic | 40.0% | |
| AGCCTCTACACAAAAGTTGA+GGG | + | chr3.1:50190526-50190545 | None:intergenic | 40.0% | |
| ATCCACAGCATATAACACAG+GGG | + | chr3.1:50189909-50189928 | None:intergenic | 40.0% | |
| ATGGGACGCAATGAAACTTA+AGG | - | chr3.1:50191077-50191096 | MS.gene41587:CDS | 40.0% | |
| ATTGCAAAGTTACACGATGG+TGG | - | chr3.1:50190058-50190077 | MS.gene41587:intron | 40.0% | |
| CAAGTTGTGAAAATGTACGG+AGG | + | chr3.1:50192071-50192090 | None:intergenic | 40.0% | |
| CTCCTACTCCAAAATCCAAT+TGG | + | chr3.1:50189846-50189865 | None:intergenic | 40.0% | |
| GATAGGATCAAATGACACCA+TGG | + | chr3.1:50191514-50191533 | None:intergenic | 40.0% | |
| GATAGGATGAAATGACACCA+TGG | - | chr3.1:50190829-50190848 | MS.gene41587:intron | 40.0% | |
| GATCCACAGCATATAACACA+GGG | + | chr3.1:50189910-50189929 | None:intergenic | 40.0% | |
| GGCAAGATTGCATCTCAAAT+TGG | - | chr3.1:50190028-50190047 | MS.gene41587:intron | 40.0% | |
| GGTGAGTTCATTCATCTCTT+AGG | - | chr3.1:50190141-50190160 | MS.gene41587:intron | 40.0% | |
| GTTTCGATGCATTCTTCATG+TGG | - | chr3.1:50190340-50190359 | MS.gene41587:intron | 40.0% | |
| TAGCCTCTACACAAAAGTTG+AGG | + | chr3.1:50190527-50190546 | None:intergenic | 40.0% | |
| TCTACACAAAAGTTGAGGGA+AGG | + | chr3.1:50190522-50190541 | None:intergenic | 40.0% | |
| ! | AAATCGACGGCTTTATCTTC+TGG | + | chr3.1:50190298-50190317 | None:intergenic | 40.0% |
| ! | ACATAGGAAGGCATAACTGT+TGG | + | chr3.1:50191614-50191633 | None:intergenic | 40.0% |
| ! | AGACTTCTTTTGTGGGAAGA+AGG | - | chr3.1:50189351-50189370 | MS.gene41587:intron | 40.0% |
| ! | ATCTAAGGCCAGAAATGACT+TGG | + | chr3.1:50191443-50191462 | None:intergenic | 40.0% |
| ! | GAAGTACAGACATCCGATTT+TGG | - | chr3.1:50189400-50189419 | MS.gene41587:intron | 40.0% |
| ! | GAATGCTTTGTTCTGCCAAT+TGG | - | chr3.1:50189828-50189847 | MS.gene41587:intron | 40.0% |
| ! | GCATTCTTCATGTGGTAATG+TGG | - | chr3.1:50190348-50190367 | MS.gene41587:intron | 40.0% |
| ! | TTCCCTCAACTTTTGTGTAG+AGG | - | chr3.1:50190521-50190540 | MS.gene41587:intron | 40.0% |
| !!! | CAATTGGATTTTGGAGTAGG+AGG | - | chr3.1:50189844-50189863 | MS.gene41587:intron | 40.0% |
| !!! | TGCCAATTGGATTTTGGAGT+AGG | - | chr3.1:50189841-50189860 | MS.gene41587:intron | 40.0% |
| ACCGCAAATCATCGAAACAG+TGG | - | chr3.1:50191960-50191979 | MS.gene41587:intron | 45.0% | |
| CAACTTGTAGTGCGACAAAG+AGG | - | chr3.1:50192084-50192103 | MS.gene41587:CDS | 45.0% | |
| CATGTGGCATCAATGAAGAG+CGG | - | chr3.1:50190002-50190021 | MS.gene41587:intron | 45.0% | |
| GACACTCAAGCGCTTAAATG+CGG | - | chr3.1:50189433-50189452 | MS.gene41587:intron | 45.0% | |
| GCTATCACAAACAGTCTCAC+AGG | - | chr3.1:50189711-50189730 | MS.gene41587:intron | 45.0% | |
| GGAAATTGGATCTGCGCTTA+TGG | - | chr3.1:50189289-50189308 | MS.gene41587:intron | 45.0% | |
| GGATCCACAGCATATAACAC+AGG | + | chr3.1:50189911-50189930 | None:intergenic | 45.0% | |
| GTTGTCAAATAGCGGCATTG+TGG | - | chr3.1:50189187-50189206 | MS.gene41587:intron | 45.0% | |
| TACCCCTGTGTTATATGCTG+TGG | - | chr3.1:50189904-50189923 | MS.gene41587:intron | 45.0% | |
| TCAAGCGCTTAAATGCGGTA+CGG | - | chr3.1:50189438-50189457 | MS.gene41587:intron | 45.0% | |
| ! | GTCTGCAAGCTTGTTCATTG+TGG | + | chr3.1:50191990-50192009 | None:intergenic | 45.0% |
| AAGAGGACGAAAGAGGACCA+TGG | - | chr3.1:50192101-50192120 | MS.gene41587:CDS | 50.0% | |
| GGCATCAATGAAGAGCGGTT+AGG | - | chr3.1:50190007-50190026 | MS.gene41587:intron | 50.0% | |
| TGCGACAAAGAGGACGAAAG+AGG | - | chr3.1:50192094-50192113 | MS.gene41587:CDS | 50.0% | |
| !! | CACGATGGTGGTCTTGTTCA+TGG | - | chr3.1:50190070-50190089 | MS.gene41587:intron | 50.0% |
| AACCAAGGCAAGGCGACTTG+GGG | - | chr3.1:50189877-50189896 | MS.gene41587:intron | 55.0% | |
| ACAACCAAGGCAAGGCGACT+TGG | - | chr3.1:50189875-50189894 | MS.gene41587:intron | 55.0% | |
| CAACCAAGGCAAGGCGACTT+GGG | - | chr3.1:50189876-50189895 | MS.gene41587:intron | 55.0% | |
| GGACGAAAGAGGACCATGGT+TGG | - | chr3.1:50192105-50192124 | MS.gene41587:CDS | 55.0% | |
| !!! | GGATTTTGGAGTAGGAGGCG+AGG | - | chr3.1:50189849-50189868 | MS.gene41587:intron | 55.0% |
| AACCCCAAGTCGCCTTGCCT+TGG | + | chr3.1:50189882-50189901 | None:intergenic | 60.0% | |
| CGAGGTGCACAACCAAGGCA+AGG | - | chr3.1:50189867-50189886 | MS.gene41587:intron | 60.0% | |
| GGAGGCGAGGTGCACAACCA+AGG | - | chr3.1:50189862-50189881 | MS.gene41587:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 50188881 | 50192131 | 50188881 | ID=MS.gene41587 |
| chr3.1 | mRNA | 50188881 | 50192131 | 50188881 | ID=MS.gene41587.t1;Parent=MS.gene41587 |
| chr3.1 | exon | 50192069 | 50192131 | 50192069 | ID=MS.gene41587.t1.exon1;Parent=MS.gene41587.t1 |
| chr3.1 | CDS | 50192069 | 50192131 | 50192069 | ID=cds.MS.gene41587.t1;Parent=MS.gene41587.t1 |
| chr3.1 | exon | 50191558 | 50191671 | 50191558 | ID=MS.gene41587.t1.exon2;Parent=MS.gene41587.t1 |
| chr3.1 | CDS | 50191558 | 50191671 | 50191558 | ID=cds.MS.gene41587.t1;Parent=MS.gene41587.t1 |
| chr3.1 | exon | 50190871 | 50191149 | 50190871 | ID=MS.gene41587.t1.exon3;Parent=MS.gene41587.t1 |
| chr3.1 | CDS | 50190871 | 50191149 | 50190871 | ID=cds.MS.gene41587.t1;Parent=MS.gene41587.t1 |
| chr3.1 | exon | 50190643 | 50190756 | 50190643 | ID=MS.gene41587.t1.exon4;Parent=MS.gene41587.t1 |
| chr3.1 | CDS | 50190643 | 50190756 | 50190643 | ID=cds.MS.gene41587.t1;Parent=MS.gene41587.t1 |
| chr3.1 | exon | 50189002 | 50189074 | 50189002 | ID=MS.gene41587.t1.exon5;Parent=MS.gene41587.t1 |
| chr3.1 | CDS | 50189002 | 50189074 | 50189002 | ID=cds.MS.gene41587.t1;Parent=MS.gene41587.t1 |
| chr3.1 | exon | 50188881 | 50188918 | 50188881 | ID=MS.gene41587.t1.exon6;Parent=MS.gene41587.t1 |
| chr3.1 | CDS | 50188881 | 50188918 | 50188881 | ID=cds.MS.gene41587.t1;Parent=MS.gene41587.t1 |
| Gene Sequence |
| Protein sequence |
