Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44103.t1 | PNY02533.1 | 87.9 | 339 | 37 | 3 | 1 | 335 | 1 | 339 | 2.30E-152 | 548.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44103.t1 | Q197W8 | 43.8 | 479 | 140 | 12 | 1 | 356 | 1 | 473 | 1.7e-76 | 287.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44103.t1 | A0A2K3NHP5 | 87.9 | 339 | 37 | 3 | 1 | 335 | 1 | 339 | 1.6e-152 | 548.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049622 | MS.gene44103 | 0.828356 | 9.41E-55 | -1.69E-46 |
| MS.gene049989 | MS.gene44103 | 0.870457 | 1.44E-66 | -1.69E-46 |
| MS.gene050297 | MS.gene44103 | 0.845843 | 3.15E-59 | -1.69E-46 |
| MS.gene051263 | MS.gene44103 | 0.810872 | 9.29E-51 | -1.69E-46 |
| MS.gene051629 | MS.gene44103 | 0.806476 | 8.08E-50 | -1.69E-46 |
| MS.gene051816 | MS.gene44103 | 0.841159 | 5.63E-58 | -1.69E-46 |
| MS.gene051955 | MS.gene44103 | 0.824484 | 7.87E-54 | -1.69E-46 |
| MS.gene052143 | MS.gene44103 | 0.82238 | 2.44E-53 | -1.69E-46 |
| MS.gene052308 | MS.gene44103 | 0.86238 | 5.28E-64 | -1.69E-46 |
| MS.gene052367 | MS.gene44103 | 0.845533 | 3.83E-59 | -1.69E-46 |
| MS.gene053173 | MS.gene44103 | 0.824251 | 8.93E-54 | -1.69E-46 |
| MS.gene053348 | MS.gene44103 | 0.853189 | 2.82E-61 | -1.69E-46 |
| MS.gene053416 | MS.gene44103 | 0.848661 | 5.32E-60 | -1.69E-46 |
| MS.gene053417 | MS.gene44103 | 0.847809 | 9.14E-60 | -1.69E-46 |
| MS.gene054551 | MS.gene44103 | 0.843126 | 1.70E-58 | -1.69E-46 |
| MS.gene054552 | MS.gene44103 | 0.81246 | 4.19E-51 | -1.69E-46 |
| MS.gene054593 | MS.gene44103 | 0.843525 | 1.33E-58 | -1.69E-46 |
| MS.gene055308 | MS.gene44103 | 0.838672 | 2.50E-57 | -1.69E-46 |
| MS.gene055578 | MS.gene44103 | 0.839677 | 1.37E-57 | -1.69E-46 |
| MS.gene055579 | MS.gene44103 | 0.878257 | 3.25E-69 | -1.69E-46 |
| MS.gene055957 | MS.gene44103 | 0.889833 | 1.70E-73 | -1.69E-46 |
| MS.gene056041 | MS.gene44103 | 0.905563 | 3.76E-80 | -1.69E-46 |
| MS.gene056042 | MS.gene44103 | 0.971407 | 4.10E-133 | -1.69E-46 |
| MS.gene056335 | MS.gene44103 | 0.815656 | 8.27E-52 | -1.69E-46 |
| MS.gene05640 | MS.gene44103 | 0.839436 | 1.59E-57 | -1.69E-46 |
| MS.gene056526 | MS.gene44103 | 0.838669 | 2.51E-57 | -1.69E-46 |
| MS.gene056528 | MS.gene44103 | 0.81578 | 7.76E-52 | -1.69E-46 |
| MS.gene057458 | MS.gene44103 | 0.860978 | 1.42E-63 | -1.69E-46 |
| MS.gene058128 | MS.gene44103 | 0.82837 | 9.33E-55 | -1.69E-46 |
| MS.gene058196 | MS.gene44103 | 0.839784 | 1.29E-57 | -1.69E-46 |
| MS.gene058197 | MS.gene44103 | 0.834993 | 2.17E-56 | -1.69E-46 |
| MS.gene058198 | MS.gene44103 | 0.835119 | 2.02E-56 | -1.69E-46 |
| MS.gene058853 | MS.gene44103 | 0.840011 | 1.12E-57 | -1.69E-46 |
| MS.gene059300 | MS.gene44103 | 0.836419 | 9.46E-57 | -1.69E-46 |
| MS.gene059553 | MS.gene44103 | 0.835453 | 1.66E-56 | -1.69E-46 |
| MS.gene060473 | MS.gene44103 | 0.871257 | 7.85E-67 | -1.69E-46 |
| MS.gene060565 | MS.gene44103 | 0.869955 | 2.10E-66 | -1.69E-46 |
| MS.gene06057 | MS.gene44103 | 0.849177 | 3.82E-60 | -1.69E-46 |
| MS.gene060825 | MS.gene44103 | 0.822001 | 2.99E-53 | -1.69E-46 |
| MS.gene06093 | MS.gene44103 | 0.836818 | 7.49E-57 | -1.69E-46 |
| MS.gene061099 | MS.gene44103 | 0.870722 | 1.18E-66 | -1.69E-46 |
| MS.gene061260 | MS.gene44103 | 0.851379 | 9.22E-61 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44103.t1 | MTR_1g082940 | 75.692 | 325 | 12 | 2 | 32 | 356 | 1 | 258 | 2.71e-163 | 457 |
| MS.gene44103.t1 | MTR_7g113510 | 56.744 | 430 | 98 | 12 | 1 | 351 | 1 | 421 | 6.01e-143 | 412 |
| MS.gene44103.t1 | MTR_7g113510 | 53.274 | 336 | 70 | 11 | 94 | 351 | 10 | 336 | 2.85e-92 | 280 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44103.t1 | AT3G05330 | 49.602 | 377 | 128 | 10 | 1 | 321 | 1 | 371 | 2.70e-101 | 306 |
Find 74 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTCTAGTAGAAGAATTTA+AGG | 0.103612 | 1.3:+58514594 | MS.gene44103:CDS |
| CTATCAAATTCTTTAACTTT+TGG | 0.200274 | 1.3:-58514117 | None:intergenic |
| CCAGGTTAGTTTCACCATTA+AGG | 0.232654 | 1.3:+58514496 | MS.gene44103:CDS |
| CCTCTATTTCTTGAAATAAT+AGG | 0.242411 | 1.3:-58514294 | None:intergenic |
| AGAAACCTTAAAAGTGATTC+TGG | 0.299979 | 1.3:-58514091 | None:intergenic |
| CCTTAAATTCTTCTACTAGA+AGG | 0.318957 | 1.3:-58514594 | None:intergenic |
| GGGAATTGAACTGTTGATAC+TGG | 0.334992 | 1.3:-58514573 | None:intergenic |
| GTTTCTCCTACAAGCATTGC+AGG | 0.339255 | 1.3:-58513853 | None:intergenic |
| AGTATTTGTCTTCGGCGAAT+AGG | 0.362928 | 1.3:+58514151 | MS.gene44103:CDS |
| GTATTTGTCTTCGGCGAATA+GGG | 0.372487 | 1.3:+58514152 | MS.gene44103:CDS |
| ATCTTGACTTTGGAGTTTGA+TGG | 0.378325 | 1.3:-58514354 | None:intergenic |
| CATTGAGTTGACTTGAACAA+AGG | 0.398174 | 1.3:-58514225 | None:intergenic |
| GGTGGAAACAAGGTTGTGTC+AGG | 0.399457 | 1.3:+58513143 | MS.gene44103:CDS |
| GCTAAAGTTCTCTTAAGCTT+TGG | 0.399461 | 1.3:-58512930 | None:intergenic |
| CTCAAACTTGCAAGTCTTGT+GGG | 0.400052 | 1.3:-58514405 | None:intergenic |
| TTAGCCCATGGCCTATTCCT+TGG | 0.403064 | 1.3:-58514180 | None:intergenic |
| TTGCTTGGCCTTTGAGACAT+TGG | 0.421229 | 1.3:-58513967 | None:intergenic |
| GAACTTCAGAACACTGCAAC+TGG | 0.423038 | 1.3:+58513122 | MS.gene44103:CDS |
| GTTGACTTGAACAAAGGGTT+GGG | 0.423813 | 1.3:-58514219 | None:intergenic |
| AGTGTTTCTCTAATGAGAAC+AGG | 0.433239 | 1.3:-58512963 | None:intergenic |
| CTTATATTTATACAGGTGAA+TGG | 0.441165 | 1.3:+58513815 | MS.gene44103:intron |
| ACACACAACTTAAGTCTAGA+AGG | 0.442768 | 1.3:+58514007 | MS.gene44103:CDS |
| AGAGAAATTGTTTCAGCAGT+TGG | 0.447693 | 1.3:+58513910 | MS.gene44103:CDS |
| TCGTTGCCTGCAATGCTTGT+AGG | 0.448297 | 1.3:+58513847 | MS.gene44103:CDS |
| ATAGGGTATCTCCAAGGAAT+AGG | 0.448663 | 1.3:+58514169 | MS.gene44103:CDS |
| AAGTTCTCTTAAGCTTTGGT+GGG | 0.451535 | 1.3:-58512926 | None:intergenic |
| CTCCTTCGAGACTAGCTACC+AGG | 0.453794 | 1.3:+58514478 | MS.gene44103:CDS |
| GCTCAAACTTGCAAGTCTTG+TGG | 0.454422 | 1.3:-58514406 | None:intergenic |
| CCTATTATTTCAAGAAATAG+AGG | 0.465686 | 1.3:+58514294 | MS.gene44103:CDS |
| CTTAAATTCTTCTACTAGAA+GGG | 0.467982 | 1.3:-58514593 | None:intergenic |
| AAAGTTCTCTTAAGCTTTGG+TGG | 0.470882 | 1.3:-58512927 | None:intergenic |
| AAGCAACAAGTATTTGTCTT+CGG | 0.479578 | 1.3:+58514143 | MS.gene44103:CDS |
| AAGAGAAACTGACCTGTGTT+TGG | 0.481868 | 1.3:-58513392 | None:intergenic |
| ATTGAGTTGACTTGAACAAA+GGG | 0.497713 | 1.3:-58514224 | None:intergenic |
| GTTATCTCAAAACTAGTCTC+AGG | 0.503294 | 1.3:+58513195 | MS.gene44103:CDS |
| AGTTGACTTGAACAAAGGGT+TGG | 0.503335 | 1.3:-58514220 | None:intergenic |
| AAAAGTGATGGAATTGTAAG+TGG | 0.506447 | 1.3:+58514537 | MS.gene44103:CDS |
| CACTGCAACTGGTGGAAACA+AGG | 0.518087 | 1.3:+58513133 | MS.gene44103:CDS |
| TGACCTGTGTTTGGCGTAGA+GGG | 0.523038 | 1.3:-58513383 | None:intergenic |
| CCTTAATGGTGAAACTAACC+TGG | 0.524129 | 1.3:-58514496 | None:intergenic |
| ACTTAAGTCTAGAAGGAAGA+AGG | 0.529704 | 1.3:+58514014 | MS.gene44103:CDS |
| ATGCTTGTAGGAGAAACTCT+TGG | 0.537823 | 1.3:+58513859 | MS.gene44103:CDS |
| AGTTCTCTTAAGCTTTGGTG+GGG | 0.545383 | 1.3:-58512925 | None:intergenic |
| ATTCTCTGAAGGGTCAAGAA+TGG | 0.551911 | 1.3:+58513329 | MS.gene44103:intron |
| CTGACCTGTGTTTGGCGTAG+AGG | 0.555004 | 1.3:-58513384 | None:intergenic |
| TATCTCCAAGGAATAGGCCA+TGG | 0.556210 | 1.3:+58514175 | MS.gene44103:CDS |
| AAAACTGCACAGAAAAGTGA+TGG | 0.564152 | 1.3:+58514525 | MS.gene44103:CDS |
| ATCTCCAAGGAATAGGCCAT+GGG | 0.568882 | 1.3:+58514176 | MS.gene44103:CDS |
| GGAACGAGCTCTTTGAAGTG+AGG | 0.574082 | 1.3:-58514070 | None:intergenic |
| CTTAGCCCACGAAGTACCAT+AGG | 0.574788 | 1.3:+58513173 | MS.gene44103:CDS |
| CTTCAGAACACTGCAACTGG+TGG | 0.586535 | 1.3:+58513125 | MS.gene44103:CDS |
| GAACGAGCTCTTTGAAGTGA+GGG | 0.590066 | 1.3:-58514069 | None:intergenic |
| GGAATTGAACTGTTGATACT+GGG | 0.592270 | 1.3:-58514572 | None:intergenic |
| TTGACTTTGGAGTTTGATGG+TGG | 0.594753 | 1.3:-58514351 | None:intergenic |
| AGATAACCTATGGTACTTCG+TGG | 0.597724 | 1.3:-58513179 | None:intergenic |
| GTGGAAACAAGGTTGTGTCA+GGG | 0.603682 | 1.3:+58513144 | MS.gene44103:CDS |
| TTTGAAGGTGGATCAATGCA+TGG | 0.607711 | 1.3:+58513088 | MS.gene44103:intron |
| TTGACTTGAACAAAGGGTTG+GGG | 0.609764 | 1.3:-58514218 | None:intergenic |
| TGGAAACAAGGTTGTGTCAG+GGG | 0.610201 | 1.3:+58513145 | MS.gene44103:CDS |
| GATAACCTATGGTACTTCGT+GGG | 0.618590 | 1.3:-58513178 | None:intergenic |
| CATTAGAGAAACACTCAACA+AGG | 0.623747 | 1.3:+58512971 | MS.gene44103:CDS |
| AGGTGGATCAATGCATGGCT+CGG | 0.628242 | 1.3:+58513093 | MS.gene44103:intron |
| CAAACTAAACTACACAATGA+CGG | 0.631209 | 1.3:+58514042 | MS.gene44103:CDS |
| GGGTCAAGAATGGTGCCACA+AGG | 0.631810 | 1.3:+58513339 | MS.gene44103:intron |
| TGCCACAAGGAAATCTCCTG+TGG | 0.632439 | 1.3:+58513352 | MS.gene44103:CDS |
| GTAGAGGGAAACTTTCCCAC+AGG | 0.636539 | 1.3:-58513368 | None:intergenic |
| GCCACAAGGAAATCTCCTGT+GGG | 0.643915 | 1.3:+58513353 | MS.gene44103:CDS |
| ATATTTATACAGGTGAATGG+AGG | 0.648586 | 1.3:+58513818 | MS.gene44103:intron |
| GGTGCAAGCAAGAATCACTC+AGG | 0.650537 | 1.3:+58513216 | MS.gene44103:CDS |
| AACCTGGTAGCTAGTCTCGA+AGG | 0.652302 | 1.3:-58514480 | None:intergenic |
| TTTCCCTCTACGCCAAACAC+AGG | 0.653931 | 1.3:+58513380 | MS.gene44103:CDS |
| CGGCGAATAGGGTATCTCCA+AGG | 0.666411 | 1.3:+58514163 | MS.gene44103:CDS |
| TCGAAGGAGAGAAAGATCGA+CGG | 0.676915 | 1.3:-58514464 | None:intergenic |
| TCCCACAGGAGATTTCCTTG+TGG | 0.705582 | 1.3:-58513354 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAAAATTAAACTAAAATA+TGG | - | chr1.3:58513277-58513296 | None:intergenic | 10.0% |
| !!! | AATGTAAAATGTTTCTTTTT+GGG | + | chr1.3:58513063-58513082 | MS.gene44103:intron | 15.0% |
| !!! | TAATGTAAAATGTTTCTTTT+TGG | + | chr1.3:58513062-58513081 | MS.gene44103:intron | 15.0% |
| !! | ATTCACCTGTATAAATATAA+GGG | - | chr1.3:58513816-58513835 | None:intergenic | 20.0% |
| !!! | AGTTTGGAATTAAATTTACT+TGG | - | chr1.3:58513426-58513445 | None:intergenic | 20.0% |
| !!! | ATTTCATTTTCTCAAATTAC+TGG | + | chr1.3:58513534-58513553 | MS.gene44103:intron | 20.0% |
| !!! | CTATCAAATTCTTTAACTTT+TGG | - | chr1.3:58514120-58514139 | None:intergenic | 20.0% |
| !!! | GAAACATTTTACATTAATCA+AGG | - | chr1.3:58513058-58513077 | None:intergenic | 20.0% |
| !!! | GTTTGGAATTAAATTTACTT+GGG | - | chr1.3:58513425-58513444 | None:intergenic | 20.0% |
| ! | ATAATGTTCAAGTGAAAGTT+TGG | - | chr1.3:58513442-58513461 | None:intergenic | 25.0% |
| ! | CACTTGAACATTATTTAACA+TGG | + | chr1.3:58513448-58513467 | MS.gene44103:intron | 25.0% |
| ! | CATTCACCTGTATAAATATA+AGG | - | chr1.3:58513817-58513836 | None:intergenic | 25.0% |
| ! | CCTATTATTTCAAGAAATAG+AGG | + | chr1.3:58514294-58514313 | MS.gene44103:CDS | 25.0% |
| ! | CTTATATTTATACAGGTGAA+TGG | + | chr1.3:58513815-58513834 | MS.gene44103:intron | 25.0% |
| ! | GATTTAATCAAAAACTTGTG+TGG | - | chr1.3:58514330-58514349 | None:intergenic | 25.0% |
| ! | TGAAATAATTAAGTCGAATG+CGG | - | chr1.3:58513520-58513539 | None:intergenic | 25.0% |
| ! | TGTAACTAACTATATAAGTC+AGG | - | chr1.3:58513698-58513717 | None:intergenic | 25.0% |
| !! | CCTCTATTTCTTGAAATAAT+AGG | - | chr1.3:58514297-58514316 | None:intergenic | 25.0% |
| !! | TAGAAAATGTGAGTGTTATT+TGG | + | chr1.3:58513743-58513762 | MS.gene44103:intron | 25.0% |
| !!! | CTGGTTTTAAATTGTGATTT+CGG | + | chr1.3:58513597-58513616 | MS.gene44103:intron | 25.0% |
| !!! | TCAAATTCTTTAACTTTTGG+AGG | - | chr1.3:58514117-58514136 | None:intergenic | 25.0% |
| AAGCAACAAGTATTTGTCTT+CGG | + | chr1.3:58514143-58514162 | MS.gene44103:CDS | 30.0% | |
| AGAAACCTTAAAAGTGATTC+TGG | - | chr1.3:58514094-58514113 | None:intergenic | 30.0% | |
| ATATTTATACAGGTGAATGG+AGG | + | chr1.3:58513818-58513837 | MS.gene44103:intron | 30.0% | |
| CAAACTAAACTACACAATGA+CGG | + | chr1.3:58514042-58514061 | MS.gene44103:CDS | 30.0% | |
| CTGAACCCTTATATTTATAC+AGG | + | chr1.3:58513808-58513827 | MS.gene44103:intron | 30.0% | |
| TAAGTCAGGCACAATTTATA+AGG | - | chr1.3:58513684-58513703 | None:intergenic | 30.0% | |
| TCAAAATATCATGTATCAGC+AGG | - | chr1.3:58513632-58513651 | None:intergenic | 30.0% | |
| TTAAATTGTGATTTCGGTCA+CGG | + | chr1.3:58513603-58513622 | MS.gene44103:intron | 30.0% | |
| ! | AAAAGTGATGGAATTGTAAG+TGG | + | chr1.3:58514537-58514556 | MS.gene44103:CDS | 30.0% |
| ! | AACTCTTGGAGAAATTTTAC+AGG | + | chr1.3:58513873-58513892 | MS.gene44103:CDS | 30.0% |
| ! | TTTTGTTACCATTCTCTGAA+GGG | + | chr1.3:58513319-58513338 | MS.gene44103:intron | 30.0% |
| !! | ATTGAGTTGACTTGAACAAA+GGG | - | chr1.3:58514227-58514246 | None:intergenic | 30.0% |
| !! | TTTGAGACATTGGTGTTTTT+GGG | - | chr1.3:58513960-58513979 | None:intergenic | 30.0% |
| !!! | ACTAGTTTTGAGATAACCTA+TGG | - | chr1.3:58513192-58513211 | None:intergenic | 30.0% |
| !!! | GGTACTTTTTCTTTTCTTCA+TGG | + | chr1.3:58513237-58513256 | MS.gene44103:intron | 30.0% |
| AAAACTGCACAGAAAAGTGA+TGG | + | chr1.3:58514525-58514544 | MS.gene44103:CDS | 35.0% | |
| ACACACAACTTAAGTCTAGA+AGG | + | chr1.3:58514007-58514026 | MS.gene44103:CDS | 35.0% | |
| ACTTAAGTCTAGAAGGAAGA+AGG | + | chr1.3:58514014-58514033 | MS.gene44103:CDS | 35.0% | |
| AGAGAAATTGTTTCAGCAGT+TGG | + | chr1.3:58513910-58513929 | MS.gene44103:CDS | 35.0% | |
| AGTGTTTCTCTAATGAGAAC+AGG | - | chr1.3:58512966-58512985 | None:intergenic | 35.0% | |
| ATAAGGGTTCAGAAGTGAAT+AGG | - | chr1.3:58513800-58513819 | None:intergenic | 35.0% | |
| CAAAAACACCAATGTCTCAA+AGG | + | chr1.3:58513959-58513978 | MS.gene44103:CDS | 35.0% | |
| CATTAGAGAAACACTCAACA+AGG | + | chr1.3:58512971-58512990 | MS.gene44103:CDS | 35.0% | |
| CTTCTAATCGAAGATGTGTA+AGG | + | chr1.3:58513474-58513493 | MS.gene44103:intron | 35.0% | |
| GCTAAAGTTCTCTTAAGCTT+TGG | - | chr1.3:58512933-58512952 | None:intergenic | 35.0% | |
| GGAATTGAACTGTTGATACT+GGG | - | chr1.3:58514575-58514594 | None:intergenic | 35.0% | |
| TAAGGGTTCAGAAGTGAATA+GGG | - | chr1.3:58513799-58513818 | None:intergenic | 35.0% | |
| ! | AAAGTTCTCTTAAGCTTTGG+TGG | - | chr1.3:58512930-58512949 | None:intergenic | 35.0% |
| ! | AACAGCAGTTTTGCAAAACA+AGG | + | chr1.3:58514268-58514287 | MS.gene44103:CDS | 35.0% |
| ! | AAGTTCTCTTAAGCTTTGGT+GGG | - | chr1.3:58512929-58512948 | None:intergenic | 35.0% |
| ! | AGTGCTTCATAGTCTTAATC+TGG | + | chr1.3:58513578-58513597 | MS.gene44103:intron | 35.0% |
| ! | AGTGCTTTTGATCTTGACTT+TGG | - | chr1.3:58514367-58514386 | None:intergenic | 35.0% |
| ! | GTTATCTCAAAACTAGTCTC+AGG | + | chr1.3:58513195-58513214 | MS.gene44103:CDS | 35.0% |
| !! | AAAAACTTGTGTGGTGTTGT+TGG | - | chr1.3:58514321-58514340 | None:intergenic | 35.0% |
| !! | ACTTAAGTTGTGTGTTTTCG+AGG | - | chr1.3:58514002-58514021 | None:intergenic | 35.0% |
| !! | ATCTTGACTTTGGAGTTTGA+TGG | - | chr1.3:58514357-58514376 | None:intergenic | 35.0% |
| !! | CATTGAGTTGACTTGAACAA+AGG | - | chr1.3:58514228-58514247 | None:intergenic | 35.0% |
| !! | GTTTTGTTACCATTCTCTGA+AGG | + | chr1.3:58513318-58513337 | MS.gene44103:intron | 35.0% |
| !! | TCGAGGTTTATTTTCTTGCT+TGG | - | chr1.3:58513985-58514004 | None:intergenic | 35.0% |
| !! | TCGTTCCAGAATCACTTTTA+AGG | + | chr1.3:58514086-58514105 | MS.gene44103:CDS | 35.0% |
| !!! | AGTACAGTTTTTTTAGCCCA+TGG | - | chr1.3:58514195-58514214 | None:intergenic | 35.0% |
| !!! | CTTTGAGACATTGGTGTTTT+TGG | - | chr1.3:58513961-58513980 | None:intergenic | 35.0% |
| !!! | GTTTCTTTTTGGGTCTTTGA+AGG | + | chr1.3:58513073-58513092 | MS.gene44103:intron | 35.0% |
| AAGAGAAACTGACCTGTGTT+TGG | - | chr1.3:58513395-58513414 | None:intergenic | 40.0% | |
| AGATAACCTATGGTACTTCG+TGG | - | chr1.3:58513182-58513201 | None:intergenic | 40.0% | |
| AGTATTTGTCTTCGGCGAAT+AGG | + | chr1.3:58514151-58514170 | MS.gene44103:CDS | 40.0% | |
| ATGCTTGTAGGAGAAACTCT+TGG | + | chr1.3:58513859-58513878 | MS.gene44103:CDS | 40.0% | |
| ATTCTTGACCCTTCAGAGAA+TGG | - | chr1.3:58513330-58513349 | None:intergenic | 40.0% | |
| CCTTAATGGTGAAACTAACC+TGG | - | chr1.3:58514499-58514518 | None:intergenic | 40.0% | |
| GATAACCTATGGTACTTCGT+GGG | - | chr1.3:58513181-58513200 | None:intergenic | 40.0% | |
| GGGAATTGAACTGTTGATAC+TGG | - | chr1.3:58514576-58514595 | None:intergenic | 40.0% | |
| GTATTTGTCTTCGGCGAATA+GGG | + | chr1.3:58514152-58514171 | MS.gene44103:CDS | 40.0% | |
| TTCTCCAAAAAGATCGACTG+CGG | + | chr1.3:58514434-58514453 | MS.gene44103:CDS | 40.0% | |
| TTTGAAGGTGGATCAATGCA+TGG | + | chr1.3:58513088-58513107 | MS.gene44103:intron | 40.0% | |
| ! | AGTTCTCTTAAGCTTTGGTG+GGG | - | chr1.3:58512928-58512947 | None:intergenic | 40.0% |
| ! | ATAGGGTATCTCCAAGGAAT+AGG | + | chr1.3:58514169-58514188 | MS.gene44103:CDS | 40.0% |
| ! | ATTCTCTGAAGGGTCAAGAA+TGG | + | chr1.3:58513329-58513348 | MS.gene44103:intron | 40.0% |
| ! | CTCAAACTTGCAAGTCTTGT+GGG | - | chr1.3:58514408-58514427 | None:intergenic | 40.0% |
| ! | GCAGTTTTCTTGCTCCTTAA+TGG | - | chr1.3:58514513-58514532 | None:intergenic | 40.0% |
| ! | TTGACTTGAACAAAGGGTTG+GGG | - | chr1.3:58514221-58514240 | None:intergenic | 40.0% |
| !! | AGTTGACTTGAACAAAGGGT+TGG | - | chr1.3:58514223-58514242 | None:intergenic | 40.0% |
| !! | CCAGGTTAGTTTCACCATTA+AGG | + | chr1.3:58514496-58514515 | MS.gene44103:CDS | 40.0% |
| !! | GTTGACTTGAACAAAGGGTT+GGG | - | chr1.3:58514222-58514241 | None:intergenic | 40.0% |
| !! | TTGACTTTGGAGTTTGATGG+TGG | - | chr1.3:58514354-58514373 | None:intergenic | 40.0% |
| !!! | GTTTTTGGGTCATCTTTGGA+GGG | - | chr1.3:58513946-58513965 | None:intergenic | 40.0% |
| !!! | TCTTTTTGGGTCTTTGAAGG+TGG | + | chr1.3:58513076-58513095 | MS.gene44103:intron | 40.0% |
| !!! | TGGTGTTTTTGGGTCATCTT+TGG | - | chr1.3:58513950-58513969 | None:intergenic | 40.0% |
| !!! | TGTTTTTGGGTCATCTTTGG+AGG | - | chr1.3:58513947-58513966 | None:intergenic | 40.0% |
| ATCTCCAAGGAATAGGCCAT+GGG | + | chr1.3:58514176-58514195 | MS.gene44103:CDS | 45.0% | |
| GAACTTCAGAACACTGCAAC+TGG | + | chr1.3:58513122-58513141 | MS.gene44103:CDS | 45.0% | |
| GCTCAAACTTGCAAGTCTTG+TGG | - | chr1.3:58514409-58514428 | None:intergenic | 45.0% | |
| GTGGAAACAAGGTTGTGTCA+GGG | + | chr1.3:58513144-58513163 | MS.gene44103:CDS | 45.0% | |
| TATCTCCAAGGAATAGGCCA+TGG | + | chr1.3:58514175-58514194 | MS.gene44103:CDS | 45.0% | |
| TCGAAGGAGAGAAAGATCGA+CGG | - | chr1.3:58514467-58514486 | None:intergenic | 45.0% | |
| TGGAAACAAGGTTGTGTCAG+GGG | + | chr1.3:58513145-58513164 | MS.gene44103:CDS | 45.0% | |
| ! | GTTTCTCCTACAAGCATTGC+AGG | - | chr1.3:58513856-58513875 | None:intergenic | 45.0% |
| ! | TTAGCCGCAGTCGATCTTTT+TGG | - | chr1.3:58514441-58514460 | None:intergenic | 45.0% |
| !! | GAACGAGCTCTTTGAAGTGA+GGG | - | chr1.3:58514072-58514091 | None:intergenic | 45.0% |
| !! | TTGCTTGGCCTTTGAGACAT+TGG | - | chr1.3:58513970-58513989 | None:intergenic | 45.0% |
| AGGTGGATCAATGCATGGCT+CGG | + | chr1.3:58513093-58513112 | MS.gene44103:intron | 50.0% | |
| CACTGCAACTGGTGGAAACA+AGG | + | chr1.3:58513133-58513152 | MS.gene44103:CDS | 50.0% | |
| CTTCAGAACACTGCAACTGG+TGG | + | chr1.3:58513125-58513144 | MS.gene44103:CDS | 50.0% | |
| GCCACAAGGAAATCTCCTGT+GGG | + | chr1.3:58513353-58513372 | MS.gene44103:CDS | 50.0% | |
| GGTGCAAGCAAGAATCACTC+AGG | + | chr1.3:58513216-58513235 | MS.gene44103:CDS | 50.0% | |
| GGTGGAAACAAGGTTGTGTC+AGG | + | chr1.3:58513143-58513162 | MS.gene44103:CDS | 50.0% | |
| GTAGAGGGAAACTTTCCCAC+AGG | - | chr1.3:58513371-58513390 | None:intergenic | 50.0% | |
| TCCCACAGGAGATTTCCTTG+TGG | - | chr1.3:58513357-58513376 | None:intergenic | 50.0% | |
| TCGTTGCCTGCAATGCTTGT+AGG | + | chr1.3:58513847-58513866 | MS.gene44103:CDS | 50.0% | |
| TGACCTGTGTTTGGCGTAGA+GGG | - | chr1.3:58513386-58513405 | None:intergenic | 50.0% | |
| TGCCACAAGGAAATCTCCTG+TGG | + | chr1.3:58513352-58513371 | MS.gene44103:CDS | 50.0% | |
| TTAGCCCATGGCCTATTCCT+TGG | - | chr1.3:58514183-58514202 | None:intergenic | 50.0% | |
| TTTCCCTCTACGCCAAACAC+AGG | + | chr1.3:58513380-58513399 | MS.gene44103:CDS | 50.0% | |
| ! | AACCTGGTAGCTAGTCTCGA+AGG | - | chr1.3:58514483-58514502 | None:intergenic | 50.0% |
| ! | CTTAGCCCACGAAGTACCAT+AGG | + | chr1.3:58513173-58513192 | MS.gene44103:CDS | 50.0% |
| !! | GGAACGAGCTCTTTGAAGTG+AGG | - | chr1.3:58514073-58514092 | None:intergenic | 50.0% |
| CTGACCTGTGTTTGGCGTAG+AGG | - | chr1.3:58513387-58513406 | None:intergenic | 55.0% | |
| ! | CGGCGAATAGGGTATCTCCA+AGG | + | chr1.3:58514163-58514182 | MS.gene44103:CDS | 55.0% |
| ! | CTCCTTCGAGACTAGCTACC+AGG | + | chr1.3:58514478-58514497 | MS.gene44103:CDS | 55.0% |
| !! | GGGTCAAGAATGGTGCCACA+AGG | + | chr1.3:58513339-58513358 | MS.gene44103:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 58512912 | 58514614 | 58512912 | ID=MS.gene44103 |
| chr1.3 | mRNA | 58512912 | 58514614 | 58512912 | ID=MS.gene44103.t1;Parent=MS.gene44103 |
| chr1.3 | exon | 58512912 | 58512992 | 58512912 | ID=MS.gene44103.t1.exon1;Parent=MS.gene44103.t1 |
| chr1.3 | CDS | 58512912 | 58512992 | 58512912 | ID=cds.MS.gene44103.t1;Parent=MS.gene44103.t1 |
| chr1.3 | exon | 58513095 | 58513237 | 58513095 | ID=MS.gene44103.t1.exon2;Parent=MS.gene44103.t1 |
| chr1.3 | CDS | 58513095 | 58513237 | 58513095 | ID=cds.MS.gene44103.t1;Parent=MS.gene44103.t1 |
| chr1.3 | exon | 58513340 | 58513401 | 58513340 | ID=MS.gene44103.t1.exon3;Parent=MS.gene44103.t1 |
| chr1.3 | CDS | 58513340 | 58513401 | 58513340 | ID=cds.MS.gene44103.t1;Parent=MS.gene44103.t1 |
| chr1.3 | exon | 58513830 | 58514614 | 58513830 | ID=MS.gene44103.t1.exon4;Parent=MS.gene44103.t1 |
| chr1.3 | CDS | 58513830 | 58514614 | 58513830 | ID=cds.MS.gene44103.t1;Parent=MS.gene44103.t1 |
| Gene Sequence |
| Protein sequence |
