Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82750.t1 | XP_003600111.1 | 92.9 | 225 | 5 | 1 | 1 | 214 | 1 | 225 | 6.70E-105 | 390.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82750.t1 | Q946Y7 | 65.2 | 227 | 66 | 3 | 1 | 214 | 1 | 227 | 1.0e-69 | 264.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82750.t1 | G7IY20 | 92.9 | 225 | 5 | 1 | 1 | 214 | 1 | 225 | 4.9e-105 | 390.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene82750 | 0.828783 | 7.42E-55 | -1.69E-46 |
| MS.gene049499 | MS.gene82750 | 0.800695 | 1.28E-48 | -1.69E-46 |
| MS.gene052519 | MS.gene82750 | 0.813009 | 3.18E-51 | -1.69E-46 |
| MS.gene052954 | MS.gene82750 | 0.819308 | 1.24E-52 | -1.69E-46 |
| MS.gene053006 | MS.gene82750 | 0.825722 | 4.02E-54 | -1.69E-46 |
| MS.gene053226 | MS.gene82750 | 0.806658 | 7.39E-50 | -1.69E-46 |
| MS.gene054651 | MS.gene82750 | 0.823723 | 1.19E-53 | -1.69E-46 |
| MS.gene055841 | MS.gene82750 | 0.826509 | 2.61E-54 | -1.69E-46 |
| MS.gene056776 | MS.gene82750 | 0.806553 | 7.78E-50 | -1.69E-46 |
| MS.gene05690 | MS.gene82750 | 0.805663 | 1.20E-49 | -1.69E-46 |
| MS.gene057208 | MS.gene82750 | 0.819028 | 1.44E-52 | -1.69E-46 |
| MS.gene058783 | MS.gene82750 | 0.800576 | 1.35E-48 | -1.69E-46 |
| MS.gene058979 | MS.gene82750 | 0.815934 | 7.17E-52 | -1.69E-46 |
| MS.gene060521 | MS.gene82750 | 0.800589 | 1.34E-48 | -1.69E-46 |
| MS.gene061091 | MS.gene82750 | 0.801438 | 9.00E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene033077 | MS.gene82750 | PPI |
| MS.gene013657 | MS.gene82750 | PPI |
| MS.gene82750 | MS.gene78212 | PPI |
| MS.gene82750 | MS.gene063476 | PPI |
| MS.gene005292 | MS.gene82750 | PPI |
| MS.gene78212 | MS.gene82750 | PPI |
| MS.gene69311 | MS.gene82750 | PPI |
| MS.gene052932 | MS.gene82750 | PPI |
| MS.gene44169 | MS.gene82750 | PPI |
| MS.gene044431 | MS.gene82750 | PPI |
| MS.gene77217 | MS.gene82750 | PPI |
| MS.gene40807 | MS.gene82750 | PPI |
| MS.gene65117 | MS.gene82750 | PPI |
| MS.gene82750 | MS.gene056096 | PPI |
| MS.gene44168 | MS.gene82750 | PPI |
| MS.gene056094 | MS.gene82750 | PPI |
| MS.gene072972 | MS.gene82750 | PPI |
| MS.gene02663 | MS.gene82750 | PPI |
| MS.gene82750 | MS.gene81965 | PPI |
| MS.gene66057 | MS.gene82750 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82750.t1 | MTR_3g052210 | 93.416 | 243 | 5 | 1 | 1 | 232 | 1 | 243 | 5.32e-166 | 457 |
| MS.gene82750.t1 | MTR_5g092870 | 75.424 | 236 | 43 | 3 | 1 | 221 | 1 | 236 | 3.70e-125 | 355 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82750.t1 | AT1G28490 | 65.714 | 245 | 71 | 3 | 1 | 232 | 1 | 245 | 9.67e-108 | 310 |
| MS.gene82750.t1 | AT1G28490 | 68.342 | 199 | 62 | 1 | 35 | 232 | 2 | 200 | 4.03e-91 | 266 |
| MS.gene82750.t1 | AT1G28490 | 65.854 | 205 | 69 | 1 | 29 | 232 | 2 | 206 | 2.16e-90 | 265 |
Find 47 sgRNAs with CRISPR-Local
Find 203 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTAGTACAACAAGCATTAA+TGG | 0.260115 | 3.1:-38835747 | MS.gene82750:CDS |
| ACTTACAGATTCTTGAATTT+CGG | 0.301091 | 3.1:+38838014 | None:intergenic |
| CATTATCATTGGCAGCATTC+TGG | 0.303561 | 3.1:+38835670 | None:intergenic |
| TTGCTGCCAGAGAACCTTCT+TGG | 0.313236 | 3.1:-38836015 | MS.gene82750:CDS |
| TGATAGAAAGGTGGATGAAT+TGG | 0.324293 | 3.1:-38836053 | MS.gene82750:intron |
| CATGATGATATTGGCCTTGT+TGG | 0.385210 | 3.1:-38834537 | MS.gene82750:CDS |
| GGGCCAGATCATGATGATAT+TGG | 0.392267 | 3.1:-38834546 | MS.gene82750:CDS |
| AATGAAATCATCATTATCAT+TGG | 0.404484 | 3.1:+38835659 | None:intergenic |
| AGTTTAAGCGTACAAAGAAT+TGG | 0.405972 | 3.1:-38835112 | MS.gene82750:CDS |
| CTAGTACAACAAGCATTAAT+GGG | 0.413684 | 3.1:-38835746 | MS.gene82750:CDS |
| GTTGGATGCATAAGGTTGAT+AGG | 0.437167 | 3.1:+38835692 | None:intergenic |
| CCGGTAGCCTCATTAGTTCT+CGG | 0.445818 | 3.1:+38835718 | None:intergenic |
| GCATTCTGGTTGGATGCATA+AGG | 0.451104 | 3.1:+38835684 | None:intergenic |
| TCGGATTTGACAACGTAGAA+AGG | 0.467631 | 3.1:+38838033 | None:intergenic |
| GACAAGCAGTGCTCGTACTC+AGG | 0.468891 | 3.1:-38835951 | MS.gene82750:intron |
| GCCAAGGAGTTCTTCATGTA+TGG | 0.471199 | 3.1:+38835075 | None:intergenic |
| CTCAAATTCAAACCTGGCCA+AGG | 0.481619 | 3.1:+38835059 | None:intergenic |
| GCCATACCAAGAAGGTTCTC+TGG | 0.485751 | 3.1:+38836009 | None:intergenic |
| TATTTGGGCTGATAGGCAAC+AGG | 0.487675 | 3.1:-38835155 | MS.gene82750:intron |
| CCATAACATGCCCTCAGCTC+AGG | 0.492791 | 3.1:-38838058 | None:intergenic |
| ATGAAGAAAGCTAGTGCAAA+GGG | 0.498351 | 3.1:-38834566 | MS.gene82750:CDS |
| ATGAAGAAAACAGTGGATGC+TGG | 0.500370 | 3.1:-38835777 | MS.gene82750:CDS |
| GGCTGATAGGCAACAGGATG+AGG | 0.505234 | 3.1:-38835149 | MS.gene82750:intron |
| AGATTGAAAATCGGAGGAGA+TGG | 0.505923 | 3.1:-38835973 | MS.gene82750:CDS |
| ACATGAAGAACTCCTTGGCC+AGG | 0.518816 | 3.1:-38835071 | MS.gene82750:intron |
| AGGCCAATATCATCATGATC+TGG | 0.522649 | 3.1:+38834543 | None:intergenic |
| GCCAGAGAACCTTCTTGGTA+TGG | 0.522757 | 3.1:-38836010 | MS.gene82750:CDS |
| GCATAAGGTTGATAGGAATC+CGG | 0.527293 | 3.1:+38835699 | None:intergenic |
| ACAGTAACACTGACTAGGTA+AGG | 0.536833 | 3.1:+38834483 | None:intergenic |
| ATGATGCTGAGATTGAAAAT+CGG | 0.537272 | 3.1:-38835982 | MS.gene82750:CDS |
| ATCATTGGCAGCATTCTGGT+TGG | 0.560569 | 3.1:+38835674 | None:intergenic |
| GTACAAAGAATTGGAGGCGT+TGG | 0.561989 | 3.1:-38835103 | MS.gene82750:CDS |
| GAAAAGATTATAGATGAACT+TGG | 0.564446 | 3.1:-38834867 | MS.gene82750:CDS |
| GAAAATGAACAAGGCCAACA+AGG | 0.572030 | 3.1:+38834523 | None:intergenic |
| ACCATACATGAAGAACTCCT+TGG | 0.572624 | 3.1:-38835076 | MS.gene82750:CDS |
| TTAAGCGTACAAAGAATTGG+AGG | 0.583419 | 3.1:-38835109 | MS.gene82750:CDS |
| CCGAGAACTAATGAGGCTAC+CGG | 0.587919 | 3.1:-38835718 | MS.gene82750:CDS |
| GGATGCACCGAGAACTAATG+AGG | 0.594871 | 3.1:-38835725 | MS.gene82750:CDS |
| AGATGAACTTGGTAACGAGA+TGG | 0.600755 | 3.1:-38834856 | MS.gene82750:CDS |
| TCATCAATGCCATACCAAGA+AGG | 0.603070 | 3.1:+38836001 | None:intergenic |
| TAGAAAGGATCCTGAGCTGA+GGG | 0.604695 | 3.1:+38838048 | None:intergenic |
| TATGAAGAAAGCTAGTGCAA+AGG | 0.617789 | 3.1:-38834567 | MS.gene82750:CDS |
| GAAAGTACGTGTTACGAAGG+AGG | 0.625731 | 3.1:-38837011 | MS.gene82750:intron |
| ATGCTGAGATTGAAAATCGG+AGG | 0.637923 | 3.1:-38835979 | MS.gene82750:CDS |
| GTAGAAAGGATCCTGAGCTG+AGG | 0.654695 | 3.1:+38838047 | None:intergenic |
| TGGCACAATGAAGAAAACAG+TGG | 0.692931 | 3.1:-38835784 | MS.gene82750:CDS |
| AGAGAAAGTACGTGTTACGA+AGG | 0.698114 | 3.1:-38837014 | MS.gene82750:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAATAACCAAAAAATT+AGG | + | chr3.1:38835019-38835038 | None:intergenic | 10.0% |
| !! | AATAAATAACCAAAAAATTA+GGG | + | chr3.1:38835018-38835037 | None:intergenic | 10.0% |
| !!! | GATTTATTTTATATCTATTT+GGG | - | chr3.1:38837377-38837396 | MS.gene82750:intron | 10.0% |
| !!! | TGATTTATTTTATATCTATT+TGG | - | chr3.1:38837376-38837395 | MS.gene82750:intron | 10.0% |
| !!! | TTTTATTCAATTTTATTTGA+TGG | - | chr3.1:38834704-38834723 | MS.gene82750:intron | 10.0% |
| !! | AAATACAATACGAAAATTTA+GGG | - | chr3.1:38835312-38835331 | MS.gene82750:intron | 15.0% |
| !! | AAATACAGTATGAAAATTTA+GGG | - | chr3.1:38835164-38835183 | MS.gene82750:intron | 15.0% |
| !! | AACTAAAATATTAACCAAAA+AGG | + | chr3.1:38837355-38837374 | None:intergenic | 15.0% |
| !! | AATTTATTTCCTAATTTCTT+TGG | - | chr3.1:38834741-38834760 | MS.gene82750:intron | 15.0% |
| !! | ATAAATAACCAAAAAATTAG+GGG | + | chr3.1:38835017-38835036 | None:intergenic | 15.0% |
| !! | TAAATACAGTATGAAAATTT+AGG | - | chr3.1:38835163-38835182 | MS.gene82750:intron | 15.0% |
| !!! | ATTTATTTGATTATGCTTTT+TGG | - | chr3.1:38835031-38835050 | MS.gene82750:intron | 15.0% |
| !!! | TTTTCATGTTTTTTACATTA+TGG | + | chr3.1:38837290-38837309 | None:intergenic | 15.0% |
| !!! | TTTTGAGTTAAAATTGATTT+GGG | - | chr3.1:38835187-38835206 | MS.gene82750:intron | 15.0% |
| !! | AAATGCAATGTGAAAATTTA+GGG | - | chr3.1:38834900-38834919 | MS.gene82750:intron | 20.0% |
| !! | AATACAATACGAAAATTTAG+GGG | - | chr3.1:38835313-38835332 | MS.gene82750:intron | 20.0% |
| !! | AATAGTTTAGAAATTTGTCT+GGG | - | chr3.1:38837320-38837339 | MS.gene82750:intron | 20.0% |
| !! | AATGAAATCATCATTATCAT+TGG | + | chr3.1:38836891-38836910 | None:intergenic | 20.0% |
| !! | AGTTGAAATTGAATGTAAAA+TGG | - | chr3.1:38835340-38835359 | MS.gene82750:intron | 20.0% |
| !! | CAATGTTTAATTGATAAGAT+TGG | - | chr3.1:38835384-38835403 | MS.gene82750:intron | 20.0% |
| !! | GAAATACAATACGAAAATTT+AGG | - | chr3.1:38835311-38835330 | MS.gene82750:intron | 20.0% |
| !! | GATTAATAACCAAAGAAATT+AGG | + | chr3.1:38834753-38834772 | None:intergenic | 20.0% |
| !! | GGTATTAAGAATAATAAACT+CGG | + | chr3.1:38835846-38835865 | None:intergenic | 20.0% |
| !! | GTTGAAATTGAATGTAAAAT+GGG | - | chr3.1:38835341-38835360 | MS.gene82750:intron | 20.0% |
| !! | TAAATAACCAAAAAATTAGG+GGG | + | chr3.1:38835016-38835035 | None:intergenic | 20.0% |
| !! | TAAATGCAATGTGAAAATTT+AGG | - | chr3.1:38834899-38834918 | MS.gene82750:intron | 20.0% |
| !! | TGGAATCAGAAATAAATATA+AGG | - | chr3.1:38837251-38837270 | MS.gene82750:intron | 20.0% |
| !! | TTTGGTTATTAATCTGATTA+CGG | - | chr3.1:38834759-38834778 | MS.gene82750:intron | 20.0% |
| !!! | AAAATGTTGCTCTTTTATTA+TGG | - | chr3.1:38837934-38837953 | MS.gene82750:intron | 20.0% |
| !!! | AGTATTTTGTTTTGATAGAA+AGG | - | chr3.1:38836482-38836501 | MS.gene82750:intron | 20.0% |
| !!! | ATGAGTTTTAATGAATAATG+AGG | + | chr3.1:38837196-38837215 | None:intergenic | 20.0% |
| !!! | ATTTTAAAGCTTACTTTTCT+AGG | - | chr3.1:38835760-38835779 | MS.gene82750:CDS | 20.0% |
| !!! | GATTTTTATTCACATTTGTT+TGG | - | chr3.1:38836134-38836153 | MS.gene82750:intron | 20.0% |
| !!! | GTTTTGAGTTAAAATTGATT+TGG | - | chr3.1:38835186-38835205 | MS.gene82750:intron | 20.0% |
| !!! | TATTTGATGGTTTTAGTATT+TGG | - | chr3.1:38834717-38834736 | MS.gene82750:intron | 20.0% |
| !!! | TTTCACATTGCATTTATTTT+CGG | + | chr3.1:38834895-38834914 | None:intergenic | 20.0% |
| ! | AAAATTAACCCTAGGTAATT+TGG | + | chr3.1:38834582-38834601 | None:intergenic | 25.0% |
| ! | AAACAAAATACTTCAGCATT+TGG | + | chr3.1:38836474-38836493 | None:intergenic | 25.0% |
| ! | AAATTAACCCTAGGTAATTT+GGG | + | chr3.1:38834581-38834600 | None:intergenic | 25.0% |
| ! | ACTTACAGATTCTTGAATTT+CGG | + | chr3.1:38834536-38834555 | None:intergenic | 25.0% |
| ! | AGATTACTGTTGTGAAATAA+TGG | - | chr3.1:38837849-38837868 | MS.gene82750:intron | 25.0% |
| ! | ATTAAAACTCATAACTGAGA+TGG | - | chr3.1:38837204-38837223 | MS.gene82750:intron | 25.0% |
| ! | ATTATTCTTAATACCACTGT+TGG | - | chr3.1:38835851-38835870 | MS.gene82750:intron | 25.0% |
| ! | ATTCCATAACGAAAGAAAAA+AGG | + | chr3.1:38837237-38837256 | None:intergenic | 25.0% |
| ! | CAATAGTTTAGAAATTTGTC+TGG | - | chr3.1:38837319-38837338 | MS.gene82750:intron | 25.0% |
| ! | GAAAAATAGGAAAATGAACA+AGG | + | chr3.1:38838036-38838055 | None:intergenic | 25.0% |
| ! | GAAAAGATTATAGATGAACT+TGG | - | chr3.1:38837680-38837699 | MS.gene82750:intron | 25.0% |
| ! | TAAGGAAGACTAAGAAAAAT+AGG | + | chr3.1:38838049-38838068 | None:intergenic | 25.0% |
| ! | TAGATGTGTTAAATAGTCTT+GGG | + | chr3.1:38835974-38835993 | None:intergenic | 25.0% |
| ! | TCAAAGAGAAAATGAAAACT+AGG | + | chr3.1:38837762-38837781 | None:intergenic | 25.0% |
| ! | TGAAGAAGACAAAATTACAA+AGG | + | chr3.1:38837619-38837638 | None:intergenic | 25.0% |
| ! | TGCTCAAAATCCAAAATTTA+TGG | + | chr3.1:38834793-38834812 | None:intergenic | 25.0% |
| ! | TTAGATGTGTTAAATAGTCT+TGG | + | chr3.1:38835975-38835994 | None:intergenic | 25.0% |
| ! | TTATTCTTAATACCACTGTT+GGG | - | chr3.1:38835852-38835871 | MS.gene82750:intron | 25.0% |
| ! | TTTAAATTATATCCCAACAG+TGG | + | chr3.1:38835867-38835886 | None:intergenic | 25.0% |
| !! | ATTAATCTGATTACGGTTTT+TGG | - | chr3.1:38834766-38834785 | MS.gene82750:intron | 25.0% |
| !! | CATCATTCTTTTCTTTACTT+TGG | - | chr3.1:38836990-38837009 | MS.gene82750:intron | 25.0% |
| !! | TAATTGATAAGATTGGTTCT+TGG | - | chr3.1:38835391-38835410 | MS.gene82750:intron | 25.0% |
| !! | TTTCTAGGTTCATCTAATTT+TGG | - | chr3.1:38835775-38835794 | MS.gene82750:CDS | 25.0% |
| !! | TTTTACATTATGGTTACGTA+AGG | + | chr3.1:38837280-38837299 | None:intergenic | 25.0% |
| !!! | ATTTTGTTTTGATAGAAAGG+TGG | - | chr3.1:38836485-38836504 | MS.gene82750:intron | 25.0% |
| !!! | TTTCCTTTTTTCTTTCGTTA+TGG | - | chr3.1:38837231-38837250 | MS.gene82750:intron | 25.0% |
| !!! | TTTTTTTCCCAAATTACCTA+GGG | - | chr3.1:38834571-38834590 | MS.gene82750:CDS | 25.0% |
| !!! | TTTTTTTTCCCAAATTACCT+AGG | - | chr3.1:38834570-38834589 | MS.gene82750:CDS | 25.0% |
| ACACATCTAAGTATAACTCA+AGG | - | chr3.1:38835985-38836004 | MS.gene82750:CDS | 30.0% | |
| AGTTTAAGCGTACAAAGAAT+TGG | - | chr3.1:38837435-38837454 | MS.gene82750:intron | 30.0% | |
| ATGATGCTGAGATTGAAAAT+CGG | - | chr3.1:38836565-38836584 | MS.gene82750:intron | 30.0% | |
| ATTAGACAAGCTTAATGCTA+CGG | + | chr3.1:38836283-38836302 | None:intergenic | 30.0% | |
| ATTATGGTTGCAGAAAAAAG+TGG | - | chr3.1:38837950-38837969 | MS.gene82750:intron | 30.0% | |
| CAAACTCATAAATCGCAATT+GGG | + | chr3.1:38835257-38835276 | None:intergenic | 30.0% | |
| CAAATTCACAGATCTCAATT+GGG | + | chr3.1:38835084-38835103 | None:intergenic | 30.0% | |
| CAAATTCACAGGTTTCAATT+GGG | + | chr3.1:38834819-38834838 | None:intergenic | 30.0% | |
| CTAGTACAACAAGCATTAAT+GGG | - | chr3.1:38836801-38836820 | MS.gene82750:intron | 30.0% | |
| CTCAAATTTATGACCAAGAA+GGG | + | chr3.1:38835221-38835240 | None:intergenic | 30.0% | |
| CTCTCTAAATCTTATGTAAC+TGG | - | chr3.1:38836961-38836980 | MS.gene82750:intron | 30.0% | |
| GCTCATATAATCTTGTAAAG+AGG | - | chr3.1:38837910-38837929 | MS.gene82750:intron | 30.0% | |
| TAAGAGAGAAAATTAACCCT+AGG | + | chr3.1:38834590-38834609 | None:intergenic | 30.0% | |
| TACATAAGATTTAGAGAGAG+AGG | + | chr3.1:38836959-38836978 | None:intergenic | 30.0% | |
| TATGTAGAGTCGTTGAAAAA+TGG | - | chr3.1:38835610-38835629 | MS.gene82750:intron | 30.0% | |
| TCAAACTCATAAATCGCAAT+TGG | + | chr3.1:38835258-38835277 | None:intergenic | 30.0% | |
| TCAAATTCACAGATCTCAAT+TGG | + | chr3.1:38835085-38835104 | None:intergenic | 30.0% | |
| TCAAATTCACAGGTTTCAAT+TGG | + | chr3.1:38834820-38834839 | None:intergenic | 30.0% | |
| TCAGCATTTGGTTATAGATT+AGG | + | chr3.1:38836462-38836481 | None:intergenic | 30.0% | |
| TCTAAGTATAACTCAAGGAT+AGG | - | chr3.1:38835990-38836009 | MS.gene82750:CDS | 30.0% | |
| TCTAGTACAACAAGCATTAA+TGG | - | chr3.1:38836800-38836819 | MS.gene82750:intron | 30.0% | |
| TCTCAAATTTATGACCAAGA+AGG | + | chr3.1:38835222-38835241 | None:intergenic | 30.0% | |
| TCTGAAAATGCTGTGAATTT+AGG | - | chr3.1:38834656-38834675 | MS.gene82750:intron | 30.0% | |
| TGATTCCTTTCTTGCTTAAT+AGG | - | chr3.1:38836739-38836758 | MS.gene82750:intron | 30.0% | |
| TGTCAAAATCTTATTGCTTC+AGG | - | chr3.1:38837658-38837677 | MS.gene82750:intron | 30.0% | |
| TTATATCTATTTGGGCTGAT+AGG | - | chr3.1:38837385-38837404 | MS.gene82750:intron | 30.0% | |
| ! | AATTCACAGCATTTTCAGAA+TGG | + | chr3.1:38834655-38834674 | None:intergenic | 30.0% |
| ! | AGACAAAATTACAAAGGCAT+AGG | + | chr3.1:38837613-38837632 | None:intergenic | 30.0% |
| ! | AGATGTGTTAAATAGTCTTG+GGG | + | chr3.1:38835973-38835992 | None:intergenic | 30.0% |
| ! | AGATTTTCCCCCTAATTTTT+TGG | - | chr3.1:38835006-38835025 | MS.gene82750:intron | 30.0% |
| ! | AGCAAAAGTCACTTTAAATG+AGG | + | chr3.1:38837025-38837044 | None:intergenic | 30.0% |
| ! | CAATGAGTTGGAAAAGAAAA+TGG | + | chr3.1:38836662-38836681 | None:intergenic | 30.0% |
| ! | TTTAACCAGATTACGCTTTT+TGG | - | chr3.1:38834948-38834967 | MS.gene82750:intron | 30.0% |
| !! | AATGTATGCCCAATTTTAGT+TGG | - | chr3.1:38836626-38836645 | MS.gene82750:intron | 30.0% |
| !! | GCTTTTTGGTGCATAAATTT+GGG | - | chr3.1:38834962-38834981 | MS.gene82750:intron | 30.0% |
| !!! | ATGTATGCCCAATTTTAGTT+GGG | - | chr3.1:38836627-38836646 | MS.gene82750:intron | 30.0% |
| !!! | GAGTTCATTATTGGTTTTGT+AGG | - | chr3.1:38835420-38835439 | MS.gene82750:intron | 30.0% |
| !!! | GGTTTTTGGTCCATAAATTT+TGG | - | chr3.1:38834780-38834799 | MS.gene82750:intron | 30.0% |
| AAAGAGTGAAGAGTTGAGAA+TGG | - | chr3.1:38836158-38836177 | MS.gene82750:intron | 35.0% | |
| AAAGCTCTCAAATTCAAACC+TGG | + | chr3.1:38837497-38837516 | None:intergenic | 35.0% | |
| ACAACTACTACACAATGAGT+TGG | + | chr3.1:38836674-38836693 | None:intergenic | 35.0% | |
| ATGAAGAAAGCTAGTGCAAA+GGG | - | chr3.1:38837981-38838000 | MS.gene82750:intron | 35.0% | |
| GATTTGGATAGGAAAGCAAA+GGG | + | chr3.1:38836038-38836057 | None:intergenic | 35.0% | |
| GCATCTTCCCAACTAAAATT+GGG | + | chr3.1:38836637-38836656 | None:intergenic | 35.0% | |
| TATGAAGAAAGCTAGTGCAA+AGG | - | chr3.1:38837980-38837999 | MS.gene82750:intron | 35.0% | |
| TCCTTTCTTGCTTAATAGGT+TGG | - | chr3.1:38836743-38836762 | MS.gene82750:intron | 35.0% | |
| TGATAGAAAGGTGGATGAAT+TGG | - | chr3.1:38836494-38836513 | MS.gene82750:intron | 35.0% | |
| TGCATCTTCCCAACTAAAAT+TGG | + | chr3.1:38836638-38836657 | None:intergenic | 35.0% | |
| TGGCATATAAGTGTTATGAG+AGG | + | chr3.1:38834635-38834654 | None:intergenic | 35.0% | |
| TGTGTAATGAATGTAGCCTA+AGG | + | chr3.1:38836376-38836395 | None:intergenic | 35.0% | |
| TTAAGCGTACAAAGAATTGG+AGG | - | chr3.1:38837438-38837457 | MS.gene82750:intron | 35.0% | |
| ! | ACTTTTGGATGGTTTCTGTT+GGG | - | chr3.1:38835700-38835719 | MS.gene82750:CDS | 35.0% |
| ! | TACTTTTGGATGGTTTCTGT+TGG | - | chr3.1:38835699-38835718 | MS.gene82750:CDS | 35.0% |
| ! | TGATAAGATTGGTTCTTGGT+GGG | - | chr3.1:38835395-38835414 | MS.gene82750:intron | 35.0% |
| ! | TGTTAAATAGTCTTGGGGAA+GGG | + | chr3.1:38835968-38835987 | None:intergenic | 35.0% |
| ! | TTCATATTTTACAGCTTCCC+CGG | + | chr3.1:38836085-38836104 | None:intergenic | 35.0% |
| ! | TTGATAAGATTGGTTCTTGG+TGG | - | chr3.1:38835394-38835413 | MS.gene82750:intron | 35.0% |
| ! | TTTGCATGAGCACTTACTTT+TGG | - | chr3.1:38835685-38835704 | MS.gene82750:CDS | 35.0% |
| !! | CGCTTTTTGGTGCATAAATT+TGG | - | chr3.1:38834961-38834980 | MS.gene82750:intron | 35.0% |
| !! | GCTTTTTGGTGCATAAAGTT+GGG | - | chr3.1:38835045-38835064 | MS.gene82750:intron | 35.0% |
| !! | TGCAATCTACTTTTGAGCAA+TGG | - | chr3.1:38835490-38835509 | MS.gene82750:intron | 35.0% |
| !! | TGCTTTTTGGTGCATAAAGT+TGG | - | chr3.1:38835044-38835063 | MS.gene82750:intron | 35.0% |
| ACCATACATGAAGAACTCCT+TGG | - | chr3.1:38837471-38837490 | MS.gene82750:intron | 40.0% | |
| ACTAGGTGAAGAAACTCACT+TGG | + | chr3.1:38837745-38837764 | None:intergenic | 40.0% | |
| AGATTGAAAATCGGAGGAGA+TGG | - | chr3.1:38836574-38836593 | MS.gene82750:intron | 40.0% | |
| AGGCCAATATCATCATGATC+TGG | + | chr3.1:38838007-38838026 | None:intergenic | 40.0% | |
| ATGAAGAAAACAGTGGATGC+TGG | - | chr3.1:38836770-38836789 | MS.gene82750:intron | 40.0% | |
| ATGCTGAGATTGAAAATCGG+AGG | - | chr3.1:38836568-38836587 | MS.gene82750:intron | 40.0% | |
| ATTCCATTCTTCGTCCTACT+CGG | - | chr3.1:38836421-38836440 | MS.gene82750:intron | 40.0% | |
| CACAGAATTAAAGACCGAGT+AGG | + | chr3.1:38836438-38836457 | None:intergenic | 40.0% | |
| CATTATCATTGGCAGCATTC+TGG | + | chr3.1:38836880-38836899 | None:intergenic | 40.0% | |
| CTACACAAGTCCCAAAAATG+CGG | - | chr3.1:38836211-38836230 | MS.gene82750:intron | 40.0% | |
| CTACTCGGTCTTTAATTCTG+TGG | - | chr3.1:38836436-38836455 | MS.gene82750:intron | 40.0% | |
| GAAAATGAACAAGGCCAACA+AGG | + | chr3.1:38838027-38838046 | None:intergenic | 40.0% | |
| GCCAACCTATTAAGCAAGAA+AGG | + | chr3.1:38836747-38836766 | None:intergenic | 40.0% | |
| GGATTTGGATAGGAAAGCAA+AGG | + | chr3.1:38836039-38836058 | None:intergenic | 40.0% | |
| GTAAGTGCTCATGCAAACAA+TGG | + | chr3.1:38835682-38835701 | None:intergenic | 40.0% | |
| GTAATGAATGTAGCCTAAGG+TGG | + | chr3.1:38836373-38836392 | None:intergenic | 40.0% | |
| GTGCAACACTTCAAATTCAC+AGG | + | chr3.1:38834830-38834849 | None:intergenic | 40.0% | |
| GTTGCAGAAAAAAGTGGCAA+TGG | - | chr3.1:38837956-38837975 | MS.gene82750:intron | 40.0% | |
| TACACAAGTCCCAAAAATGC+GGG | - | chr3.1:38836212-38836231 | MS.gene82750:intron | 40.0% | |
| TCATCAATGCCATACCAAGA+AGG | + | chr3.1:38836549-38836568 | None:intergenic | 40.0% | |
| TCGGATTTGACAACGTAGAA+AGG | + | chr3.1:38834517-38834536 | None:intergenic | 40.0% | |
| TGGCACAATGAAGAAAACAG+TGG | - | chr3.1:38836763-38836782 | MS.gene82750:intron | 40.0% | |
| TTGCTTTCCTATCCAAATCC+TGG | - | chr3.1:38836039-38836058 | MS.gene82750:CDS | 40.0% | |
| TTTAGTCACACATGCAGACA+AGG | + | chr3.1:38837066-38837085 | None:intergenic | 40.0% | |
| ! | AGAGAAAGTACGTGTTACGA+AGG | - | chr3.1:38835533-38835552 | MS.gene82750:intron | 40.0% |
| ! | ATGCACCAAAAAGCGTAATC+TGG | + | chr3.1:38834956-38834975 | None:intergenic | 40.0% |
| ! | GTGTTAAATAGTCTTGGGGA+AGG | + | chr3.1:38835969-38835988 | None:intergenic | 40.0% |
| ! | GTTAAATAGTCTTGGGGAAG+GGG | + | chr3.1:38835967-38835986 | None:intergenic | 40.0% |
| ! | GTTGGATGCATAAGGTTGAT+AGG | + | chr3.1:38836858-38836877 | None:intergenic | 40.0% |
| !! | AGATGAACTTGGTAACGAGA+TGG | - | chr3.1:38837691-38837710 | MS.gene82750:intron | 40.0% |
| !! | CATGAGCACTTACTTTTGGA+TGG | - | chr3.1:38835689-38835708 | MS.gene82750:CDS | 40.0% |
| !! | CATGATGATATTGGCCTTGT+TGG | - | chr3.1:38838010-38838029 | MS.gene82750:intron | 40.0% |
| !! | GCATAAGGTTGATAGGAATC+CGG | + | chr3.1:38836851-38836870 | None:intergenic | 40.0% |
| !!! | CTGGGCATAATTAGCCTTTT+TGG | - | chr3.1:38837338-38837357 | MS.gene82750:intron | 40.0% |
| ATAGGAAAGCAAAGGGCAAG+AGG | + | chr3.1:38836031-38836050 | None:intergenic | 45.0% | |
| ATCATTGGCAGCATTCTGGT+TGG | + | chr3.1:38836876-38836895 | None:intergenic | 45.0% | |
| CCTAAGGTGGAAAACAGAGT+AGG | + | chr3.1:38836360-38836379 | None:intergenic | 45.0% | |
| CTACGCTTTCACATCCAGAA+AGG | + | chr3.1:38835564-38835583 | None:intergenic | 45.0% | |
| CTCAAATTCAAACCTGGCCA+AGG | + | chr3.1:38837491-38837510 | None:intergenic | 45.0% | |
| GCCAAGGAGTTCTTCATGTA+TGG | + | chr3.1:38837475-38837494 | None:intergenic | 45.0% | |
| GGAATCTCCAGGATTTGGAT+AGG | + | chr3.1:38836049-38836068 | None:intergenic | 45.0% | |
| GGGCCAGATCATGATGATAT+TGG | - | chr3.1:38838001-38838020 | MS.gene82750:intron | 45.0% | |
| TAGAAAGGATCCTGAGCTGA+GGG | + | chr3.1:38834502-38834521 | None:intergenic | 45.0% | |
| TATTTGGGCTGATAGGCAAC+AGG | - | chr3.1:38837392-38837411 | MS.gene82750:intron | 45.0% | |
| TGGTGGGACGAGTTCATTAT+TGG | - | chr3.1:38835411-38835430 | MS.gene82750:intron | 45.0% | |
| TTACGAAGGAGGTTCCTTTC+TGG | - | chr3.1:38835547-38835566 | MS.gene82750:intron | 45.0% | |
| ! | ATGTGAAAGCGTAGAATGGC+AGG | - | chr3.1:38835570-38835589 | MS.gene82750:intron | 45.0% |
| ! | CCTACTCTGTTTTCCACCTT+AGG | - | chr3.1:38836357-38836376 | MS.gene82750:intron | 45.0% |
| ! | CTGGATGTGAAAGCGTAGAA+TGG | - | chr3.1:38835566-38835585 | MS.gene82750:intron | 45.0% |
| ! | GAAAGTACGTGTTACGAAGG+AGG | - | chr3.1:38835536-38835555 | MS.gene82750:intron | 45.0% |
| ! | GCATTCTGGTTGGATGCATA+AGG | + | chr3.1:38836866-38836885 | None:intergenic | 45.0% |
| ! | GTACAAAGAATTGGAGGCGT+TGG | - | chr3.1:38837444-38837463 | MS.gene82750:intron | 45.0% |
| ! | TTCACTCCACCCGCATTTTT+GGG | + | chr3.1:38836224-38836243 | None:intergenic | 45.0% |
| ! | TTGGGATTTGAAGCCCTTCT+TGG | - | chr3.1:38835205-38835224 | MS.gene82750:intron | 45.0% |
| ! | TTTCACTCCACCCGCATTTT+TGG | + | chr3.1:38836225-38836244 | None:intergenic | 45.0% |
| ACAAGTCCCAAAAATGCGGG+TGG | - | chr3.1:38836215-38836234 | MS.gene82750:intron | 50.0% | |
| ACATGAAGAACTCCTTGGCC+AGG | - | chr3.1:38837476-38837495 | MS.gene82750:intron | 50.0% | |
| AGACCGAGTAGGACGAAGAA+TGG | + | chr3.1:38836427-38836446 | None:intergenic | 50.0% | |
| CCAAATCCTGGAGATTCCCT+GGG | - | chr3.1:38836051-38836070 | MS.gene82750:intron | 50.0% | |
| CCGAGAACTAATGAGGCTAC+CGG | - | chr3.1:38836829-38836848 | MS.gene82750:intron | 50.0% | |
| GCCAGAGAACCTTCTTGGTA+TGG | - | chr3.1:38836537-38836556 | MS.gene82750:intron | 50.0% | |
| GCCATACCAAGAAGGTTCTC+TGG | + | chr3.1:38836541-38836560 | None:intergenic | 50.0% | |
| GGATGCACCGAGAACTAATG+AGG | - | chr3.1:38836822-38836841 | MS.gene82750:intron | 50.0% | |
| GTAGAAAGGATCCTGAGCTG+AGG | + | chr3.1:38834503-38834522 | None:intergenic | 50.0% | |
| TCCAAATCCTGGAGATTCCC+TGG | - | chr3.1:38836050-38836069 | MS.gene82750:intron | 50.0% | |
| TTGCTGCCAGAGAACCTTCT+TGG | - | chr3.1:38836532-38836551 | MS.gene82750:intron | 50.0% | |
| ! | CCGGTAGCCTCATTAGTTCT+CGG | + | chr3.1:38836832-38836851 | None:intergenic | 50.0% |
| ! | GAAAGCGTAGAATGGCAGGT+AGG | - | chr3.1:38835574-38835593 | MS.gene82750:intron | 50.0% |
| AGCATACCCAGGGAATCTCC+AGG | + | chr3.1:38836060-38836079 | None:intergenic | 55.0% | |
| ATTCCCTGGGTATGCTTGCC+GGG | - | chr3.1:38836064-38836083 | MS.gene82750:intron | 55.0% | |
| CCCAGGGAATCTCCAGGATT+TGG | + | chr3.1:38836054-38836073 | None:intergenic | 55.0% | |
| GACAAGCAGTGCTCGTACTC+AGG | - | chr3.1:38836596-38836615 | MS.gene82750:intron | 55.0% | |
| GATTCCCTGGGTATGCTTGC+CGG | - | chr3.1:38836063-38836082 | MS.gene82750:intron | 55.0% | |
| GGCTGATAGGCAACAGGATG+AGG | - | chr3.1:38837398-38837417 | MS.gene82750:intron | 55.0% | |
| TTCCCCGGCAAGCATACCCA+GGG | + | chr3.1:38836070-38836089 | None:intergenic | 60.0% | |
| TTCCCTGGGTATGCTTGCCG+GGG | - | chr3.1:38836065-38836084 | MS.gene82750:intron | 60.0% | |
| CTTCCCCGGCAAGCATACCC+AGG | + | chr3.1:38836071-38836090 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 38834496 | 38838073 | 38834496 | ID=MS.gene82750 |
| chr3.1 | mRNA | 38834496 | 38838073 | 38834496 | ID=MS.gene82750.t1;Parent=MS.gene82750 |
| chr3.1 | exon | 38838020 | 38838073 | 38838020 | ID=MS.gene82750.t1.exon1;Parent=MS.gene82750.t1 |
| chr3.1 | CDS | 38838020 | 38838073 | 38838020 | ID=cds.MS.gene82750.t1;Parent=MS.gene82750.t1 |
| chr3.1 | exon | 38837012 | 38837089 | 38837012 | ID=MS.gene82750.t1.exon2;Parent=MS.gene82750.t1 |
| chr3.1 | CDS | 38837012 | 38837089 | 38837012 | ID=cds.MS.gene82750.t1;Parent=MS.gene82750.t1 |
| chr3.1 | exon | 38835952 | 38836065 | 38835952 | ID=MS.gene82750.t1.exon3;Parent=MS.gene82750.t1 |
| chr3.1 | CDS | 38835952 | 38836065 | 38835952 | ID=cds.MS.gene82750.t1;Parent=MS.gene82750.t1 |
| chr3.1 | exon | 38835624 | 38835808 | 38835624 | ID=MS.gene82750.t1.exon4;Parent=MS.gene82750.t1 |
| chr3.1 | CDS | 38835624 | 38835808 | 38835624 | ID=cds.MS.gene82750.t1;Parent=MS.gene82750.t1 |
| chr3.1 | exon | 38835072 | 38835162 | 38835072 | ID=MS.gene82750.t1.exon5;Parent=MS.gene82750.t1 |
| chr3.1 | CDS | 38835072 | 38835162 | 38835072 | ID=cds.MS.gene82750.t1;Parent=MS.gene82750.t1 |
| chr3.1 | exon | 38834824 | 38834889 | 38834824 | ID=MS.gene82750.t1.exon6;Parent=MS.gene82750.t1 |
| chr3.1 | CDS | 38834824 | 38834889 | 38834824 | ID=cds.MS.gene82750.t1;Parent=MS.gene82750.t1 |
| chr3.1 | exon | 38834496 | 38834606 | 38834496 | ID=MS.gene82750.t1.exon7;Parent=MS.gene82750.t1 |
| chr3.1 | CDS | 38834496 | 38834606 | 38834496 | ID=cds.MS.gene82750.t1;Parent=MS.gene82750.t1 |
| Gene Sequence |
| Protein sequence |
