AlfalfaGEDB | MS.gene065513

M. sativa cultivar XinJiangDaYe / MS.gene065513

KEGG: K08500
GO: GO:0005575 GO:0006810 GO:0008150 GO:0016020 GO:0016192 GO:0048193 GO:0051179 GO:0051234 GO:0110165
PFAM: PF09177.14

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene065513.t1	XP_027187359.1	85.2	263	23	2	1	263	1	247	2.40E-120	441.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene065513.t1	Q946Y7	68.4	212	63	3	1	211	1	209	3.8e-74	279.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene065513.t1	A0A3Q7X0P4	85.2	263	23	2	1	263	1	247	1.7e-120	441.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049208	MS.gene065513	0.800208	1.61E-48	-1.69E-46
MS.gene049887	MS.gene065513	0.815077	1.11E-51	-1.69E-46
MS.gene050752	MS.gene065513	0.851008	1.17E-60	-1.69E-46
MS.gene050838	MS.gene065513	0.839294	1.73E-57	-1.69E-46
MS.gene050955	MS.gene065513	0.829398	5.26E-55	-1.69E-46
MS.gene051003	MS.gene065513	0.826607	2.47E-54	-1.69E-46
MS.gene051234	MS.gene065513	0.824164	9.36E-54	-1.69E-46
MS.gene051343	MS.gene065513	0.809463	1.87E-50	-1.69E-46
MS.gene051676	MS.gene065513	0.811605	6.44E-51	-1.69E-46
MS.gene051746	MS.gene065513	0.808255	3.39E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene005292	MS.gene065513	PPI
MS.gene013657	MS.gene065513	PPI
MS.gene02663	MS.gene065513	PPI
MS.gene033077	MS.gene065513	PPI
MS.gene044431	MS.gene065513	PPI
MS.gene052932	MS.gene065513	PPI
MS.gene056094	MS.gene065513	PPI
MS.gene056096	MS.gene065513	PPI
MS.gene063476	MS.gene065513	PPI
MS.gene072972	MS.gene065513	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene065513.t1	MTR_5g092870	99.526	211	1	0	1	211	1	211	1.05e-154	432
MS.gene065513.t1	MTR_3g052210	77.251	211	44	2	1	211	1	207	2.35e-116	334

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene065513.t1	AT1G28490	68.396	212	63	3	1	211	1	209	5.22e-101	295
MS.gene065513.t1	AT1G28490	68.790	157	46	2	55	211	11	164	1.80e-70	216
MS.gene065513.t1	AT1G28490	68.790	157	46	2	55	211	17	170	4.16e-70	216

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Find 67 sgRNAs with CRISPR-Local

Find 302 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGGAAGTTCTTGCTGCTTG+TGG	0.475725	5.2:-78346525	MS.gene065513:CDS
AAGTCTAACCAATATGCCTC+TGG	0.429106	5.2:-78345217	MS.gene065513:CDS
AAGTGGAGATTGAAAACCGG+AGG	0.652309	5.2:-78345587	MS.gene065513:CDS
ACAACTCATGCTAGTATAAG+TGG	0.493222	5.2:-78345289	MS.gene065513:CDS
ACAATACATGAAGAGCTCCT+TGG	0.478003	5.2:-78343083	MS.gene065513:CDS
ACATGAAGAGCTCCTTGGGC+AGG	0.525155	5.2:-78343078	MS.gene065513:intron
AGAACAGTGGAAGCTGGAAA+GGG	0.568137	5.2:-78345322	MS.gene065513:CDS
AGATGAACTGGGAAATGAGA+TGG	0.539156	5.2:-78342853	MS.gene065513:CDS
AGATTGAAAACCGGAGGAGG+TGG	0.529877	5.2:-78345581	MS.gene065513:CDS
AGTCTAACCAATATGCCTCT+GGG	0.528315	5.2:-78345216	MS.gene065513:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAATATCCATTCCTAGA+AGG	+	chr5.2:78346400-78346419	None:intergenic	30.0%
AATAAGAAGGGTGGTAAAAA+TGG	-	chr5.2:78343752-78343771	MS.gene065513:intron	30.0%
AATCAAAGAAAAACAAGGCT+GGG	+	chr5.2:78343555-78343574	None:intergenic	30.0%
AATCAATGGTTTCTGATTGA+TGG	-	chr5.2:78343720-78343739	MS.gene065513:intron	30.0%
AATCTCTCAGCAATAAAATC+AGG	+	chr5.2:78346698-78346717	None:intergenic	30.0%
AATTCAATGCACAATCAGAT+TGG	+	chr5.2:78342674-78342693	None:intergenic	30.0%
AATTTGTATACCAATGTTGG+AGG	+	chr5.2:78343216-78343235	None:intergenic	30.0%
ACAATTTATTGCAAGCACAA+AGG	+	chr5.2:78344686-78344705	None:intergenic	30.0%
ACCTATGTCAAACTTTAACA+AGG	-	chr5.2:78344091-78344110	MS.gene065513:intron	30.0%
AGTTATTAAACACGCACTTA+AGG	-	chr5.2:78343269-78343288	MS.gene065513:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.2	gene	78342521	78347121	78342521	ID=MS.gene065513
chr5.2	mRNA	78342521	78347121	78342521	ID=MS.gene065513.t1;Parent=MS.gene065513
chr5.2	exon	78347068	78347121	78347068	ID=MS.gene065513.t1.exon1;Parent=MS.gene065513.t1
chr5.2	CDS	78347068	78347121	78347068	ID=cds.MS.gene065513.t1;Parent=MS.gene065513.t1
chr5.2	exon	78346509	78346619	78346509	ID=MS.gene065513.t1.exon2;Parent=MS.gene065513.t1
chr5.2	CDS	78346509	78346619	78346509	ID=cds.MS.gene065513.t1;Parent=MS.gene065513.t1
chr5.2	exon	78345560	78345673	78345560	ID=MS.gene065513.t1.exon3;Parent=MS.gene065513.t1
chr5.2	CDS	78345560	78345673	78345560	ID=cds.MS.gene065513.t1;Parent=MS.gene065513.t1
chr5.2	exon	78345163	78345359	78345163	ID=MS.gene065513.t1.exon4;Parent=MS.gene065513.t1
chr5.2	CDS	78345163	78345359	78345163	ID=cds.MS.gene065513.t1;Parent=MS.gene065513.t1
chr5.2	exon	78343079	78343169	78343079	ID=MS.gene065513.t1.exon5;Parent=MS.gene065513.t1
chr5.2	CDS	78343079	78343169	78343079	ID=cds.MS.gene065513.t1;Parent=MS.gene065513.t1
chr5.2	exon	78342775	78342886	78342775	ID=MS.gene065513.t1.exon6;Parent=MS.gene065513.t1
chr5.2	CDS	78342775	78342886	78342775	ID=cds.MS.gene065513.t1;Parent=MS.gene065513.t1
chr5.2	exon	78342521	78342696	78342521	ID=MS.gene065513.t1.exon7;Parent=MS.gene065513.t1
chr5.2	CDS	78342521	78342696	78342521	ID=cds.MS.gene065513.t1;Parent=MS.gene065513.t1

Gene Sequence

>MS.gene065513

ATGCCCTCAGCTCAAGATCCATTTTACGTTGTCAAAGAAGATATTCAAGATTCTGTAAGTTCTTCTTTCTCACCTTCATTTCGCAATTGTTAGAATCAAATTTGCAATTTTTTTCATAGATTATGTTGATCCATGACTTTATTACTTGATCCAATCTGATTGTGCATTGAATTTCAGTAATTGGAATAATTTATTTGATAATTGATGTGCTGTTTTTGATGCAATGTAAAGATTTGATTTTGAAGAAAACCCAATTCCTATTTCTATTGATGCAATGTAAAGATTTGATTTTGAAGAAAACCCAATTCCTATTTCTATTGATGCAATGTAAAGATTTGATTTTGAAGAAAACCCAGTTCTTATTTTTTGTCGATGCAATGCAAAGTTTTGATTTTTGAAGAAAACCCAGTTCTTATTTTTGTTGATGCAATGTAAAGATTTGATTTTTGAAGAAAACCCAGTTCTGATAATGATTTTATGGTTTTTTTTTTTATGTGGCAAGATTGATAGGTTGCAATCTAATTTTCATCAATGGGAAAACACTTCTGATACTGGCGAGCATTTGAACCTTTCAAAGGAAGTTCTTGCTGCTTGTGGAAGTATTGAGTGGCAGGTTTGTTTCTGCTGCACTTGTAGTGAAGCCTTCCACAATTTGGTCAATGTATTTTTGTTTTAAATGAATTTTATTTATTCCTCCAACATTGGTATACAAATTAGTTATCATCGCTTGCATGAACTGGGATTTGTTAGTTATTAAACACGCACTTAAGGTATGTCTGAGTTTGGAGTTTAATCTAGATCAGCCGGAGGAAGTGATCTTCCCATGTTCAGAAGTTATTTTACTAAGTAAATGATATTCTTTAGCAAGAAAATTTAAGGCAAAAGAATAGTTTACTTTATTAACATTGCATGCAAAATATTTGTAAATATCATTATTGGATTCTAACTTATTTTAATAGCTTATTATTAATAATTAATAAATAGTCTAGTGTAGTAATGTATTAAACTCATTTATATCCTTTCCCCGCCTCCCCAGCCTTGTTTTTCTTTGATTGTATCCCTTCCCTGTGGTAGGAAAGGTGAAAAATAAGAGAATAATCTATCAATTTAGTCCCTAAACTATGAAAATATTATAAGTAGTCCCTTTAGTATTTGAAACTTCGTCGGTTTAGTCCCTAACATCTTAATATCAGGGACTGAATCAATGGTTTCTGATTGATGGTTTATTCAAAATAAGAAGGGTGGTAAAAATGGAGTCTAGTGAAAATGTTGGAAGATAGAAAGTATCTTCCAACTCCACAAGCACACACTTAGTCTACTGAGATATGCAGCCTGCCAGCCTCTCTTTATCACACATGTTAAGCATTGCTAATATTTGACGTGGATTCTTTTCTGCCGCGATACAATCTGTTCAAACTGCTGAAATGTGTTAATTTTTTGATAGAAAGGTGGATGAATTGGACAAAGCAATTTCTGTAGCATCTAGAGATCCTTCTTGGTATGGCATTGATGAAGTGGAGATTGAAAACCGGAGGAGGTGGACCAGCAATGCTCGCACCCAGGTAAAATAACCTATGTCAAACTTTAACAAGGCTAAGGAATACATGTCAAAATTTTCTAAACCTAATCTACAGCTGTTCATTTATTATATAAACCACAGATATTAGATTTCCTTTCCTTTTGTAACCAAGAAAATAAAGTTTTCCATTCCTTTTCTTTATCTGCTGCATGATACACATGAACAAATGTTGTTCATTAATAGGTGCGCACAATTAAGAGAACAGTGGAAGCTGGAAAGGGATCAAATACAACAACTCATGCTAGTATAAGTGGGATGCACAGGGAATTAATGAGGCTTCCAGATTCTCATCAAAGTACGTCTAAGTCTAACCAATATGCCTCTGGGGATAATGATGATTTCATAGAATCAGAATCAGATAGGCAAATGCTTCTTATAAAGTATGTTTTCTTCCCTTTCTTCATCTTATAAAGTATGTTTGTCTTTTTTCCCACCTTAAATTGAATTTGTGCACATGTTCGTGATATCAAACTCCAATTATGGACACTTTTTTGTATGAGATGGAAAATATTCTCTTGGTTATTACTAGTTTGAATTCTTAAGCTGAGTGCATTATATTTTGCTTTCTGACCAGATGTAAGATCCTTTGTGCTTGCAATAAATTGTGAAAATATGTGAATATATTTCTTGTGCTACTCTAGTTAATTCTGTTAATTAATTGTGTTCTTCCTTGTCATCCTTGCTAATTGTTTTAATGTTGTTTGAATCTACTGTTACTGTTAGATAAACAATATAACTGAAATAGTGGATTCAGTTTTTCATTCCTATAGAAGATAAGAAAATCGGGAAAGAATAGTATAAACTCTGGCAAGTAACTTTAACATAAATATAGGCACAAAATACAATTTTCAAGTATTTAGGTGGTTTTTGGTTTTAAAAGTTAAATTTTGAAACAAAATATGTTTGGGTAAAATACGGTTGAAATGATTTTGTACCCAATTTTGAAAAAGTTAAGGGAAACCAAAAACCACATAAATACATTTTCTGATTGTTGTTTTTATTTTAACACTAAAAACGTTCTCTTTATATCCATCGTGCGTATTCTCTTTTGACGCTTCGTGCGTTTTCTCTTATGAATGACCCTCCCTGCCATTTTGGTTCGTCCACAGTTGTTCCATTTACGGCTCCACCGTTCCTGTGCGACATTGTTTTTGCGCAACATCGTTCCTGTCAGTGATGCCTTTCCTGTGAGCAGCGTTCCTGCGGGCACAGCCTTCCCTGCTCGTGATGCCTTAACCTTCACTGTATCGACCCCCTAGCCTTCATTGTGTGCGACGCTTTAAGTCCTTCGATACAGTTTCTCAGTCTGCCACACCATTCCCTTCCTGCGCTCCATGTTACCCTGTTTGCATTGATTTTTTCTTACTTGGCATTGTTATCCCGAGGCTTCTTTTGTTGAGATATAGCTTTTGGGGGTGGCTTGTCTTTTATGCCTTATGCATATTTTTGTTGTGTGTGGGACCTTGTTGTATTTTTGTTGTGTATGGGACCTTGTTGTAATGCGAAACAGTTGCTGTTTGGCCGTTGGGGGCTGCATCTCATGTTTAAGCCAGGGAGGGTGATTCCCTAATTAAGGCTTCCATTATGAGTTGGCAGTAGGGAAGGGTAGTTTCTCAGTTAAGTATTCTCAGTATTAGTGTCTGTCCCATGCACCTCAAACTTTTGAAATTCTAAAACATAACTCATGCATCAAACTTCTAAATCTTTTGAAATTATGCTCAACAGTGTGACTGGTTACAGAATTTAGTAACATAATAAATCATAATATTAAAGTGAACTATTACGTTCCTCTTTTTTTCAAACTTTTCCGATTATCTCTGCATGATTTAGTTATCTGATGATTGAATTTGAGTTTAGCTCTTTATACTACACTGTTGAATGGATAGTGATTACCTGCAGTTGATTTTCAACAGTATGATCCTAGTTGCTTTTTGATTATATAGAAGATGTACTTTCATAAGTTGTTTTTTGATTGATGATAGAAAATTGGGCTTAATTGTTTTACTTTGTTTGTGGGGTTGGGTTTGTTTTGGAAGATTATGCATCCTTTGTATATATCCTTTGTTCTATCTTGTTTTTACTTTGTTTGATTCTTATTTTTATAGTTTTATAATATATATCGTTGTTGTCAATATTTTGTGTCAATTTTTTTTATATTAGGTTAATTCATAGTAGTGGCTTAATTCAAAAATAAAAACTGAAACTCAATTTAAAATTGAATTCAAAACTGAAACTAGTTTTTGATTTTGAAAATTTCAAAATAAAACAGAAAACCACCCGAACGAGGCATTAGGGAACCTTCTAGGAATGGATATTCTTTCTAGAAACCACAAGTTGTCATTTTTATAATGTGATATTTACTGGTACTGATAGGCAGCAGGACGAGGAGTTGGATGAGCTTAGTTTAAGTGTACAGAGAATCGGAGGTGTTGGACTTACAATACATGAAGAGCTCCTTGGGCAGGTAGCTTTGATATATTTATGTTTTATGATTTGTTTCTATATTGCTTTGAAAACTAGTAGACTAGGCAACATTAATGTAATATGTTTCCTTCAAGTGTTTTCAACTGAAGATGTGTTCTCATGCGAGTCATGCCTGATTTTATTGCTGAGAGATTTTTTTTCTTTCTAAATTGTCAAAATCTTGATGCTTCAGGAAAAGATTCTAGATGAACTGGGAAATGAGATGGACAGTACATCCAATCGTCTAGATTTTGTCCAAGTGAGTTTCCGCTTTTCGATTTTGCTATCTGATTTTAATATTGCTGGTAATAAAGATATGAATGGAAAATATTTGAATGTTGACGTGTGTAAGTTGATGCGCGTCTCTTTGTTTATGATTTCAGAAAAGAGTGGCAATGGTGATGAAGAAGGCCAGTGCAAAGGGGCAGATGATGATGATATGCGGTTTGCTGGCCCTGTTCATTTTCCTTTTTATCTTGGTATTCTTCACCTAGTCATATCTGAATGTCTTGGTTGTAAATGCAAAAAGGGATCCAAGTTTGAGAAGACAAAAGATTAA

Protein sequence

>MS.gene065513.t1

MPSAQDPFYVVKEDIQDSIDRLQSNFHQWENTSDTGEHLNLSKEVLAACGSIEWQVDELDKAISVASRDPSWYGIDEVEIENRRRWTSNARTQVRTIKRTVEAGKGSNTTTHASISGMHRELMRLPDSHQSTSKSNQYASGDNDDFIESESDRQMLLIKQQDEELDELSLSVQRIGGVGLTIHEELLGQEKILDELGNEMDSTSNRLDFVQVSFRFSILLSDFNIAEKSGNGDEEGQCKGADDDDMRFAGPVHFPFYLGILHLVISECLGCKCKKGSKFEKTKD