Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22645.t1 | XP_003600111.1 | 96.6 | 207 | 7 | 0 | 1 | 207 | 19 | 225 | 7.20E-104 | 386.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22645.t1 | Q946Y7 | 66.5 | 209 | 68 | 2 | 1 | 207 | 19 | 227 | 2.5e-68 | 260.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22645.t1 | G7IY20 | 96.6 | 207 | 7 | 0 | 1 | 207 | 19 | 225 | 5.2e-104 | 386.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene22645 | 0.823774 | 1.16E-53 | -1.69E-46 |
| MS.gene051066 | MS.gene22645 | 0.801622 | 8.26E-49 | -1.69E-46 |
| MS.gene051198 | MS.gene22645 | 0.814812 | 1.27E-51 | -1.69E-46 |
| MS.gene051210 | MS.gene22645 | 0.801464 | 8.89E-49 | -1.69E-46 |
| MS.gene056831 | MS.gene22645 | 0.812018 | 5.23E-51 | -1.69E-46 |
| MS.gene059842 | MS.gene22645 | 0.825261 | 5.16E-54 | -1.69E-46 |
| MS.gene060296 | MS.gene22645 | 0.809241 | 2.09E-50 | -1.69E-46 |
| MS.gene060310 | MS.gene22645 | 0.801457 | 8.92E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene044431 | MS.gene22645 | PPI |
| MS.gene77217 | MS.gene22645 | PPI |
| MS.gene69311 | MS.gene22645 | PPI |
| MS.gene44168 | MS.gene22645 | PPI |
| MS.gene056094 | MS.gene22645 | PPI |
| MS.gene072972 | MS.gene22645 | PPI |
| MS.gene02663 | MS.gene22645 | PPI |
| MS.gene81965 | MS.gene22645 | PPI |
| MS.gene40807 | MS.gene22645 | PPI |
| MS.gene056096 | MS.gene22645 | PPI |
| MS.gene65117 | MS.gene22645 | PPI |
| MS.gene013657 | MS.gene22645 | PPI |
| MS.gene66057 | MS.gene22645 | PPI |
| MS.gene033077 | MS.gene22645 | PPI |
| MS.gene005292 | MS.gene22645 | PPI |
| MS.gene78212 | MS.gene22645 | PPI |
| MS.gene063476 | MS.gene22645 | PPI |
| MS.gene052932 | MS.gene22645 | PPI |
| MS.gene44169 | MS.gene22645 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22645.t1 | MTR_3g052210 | 96.889 | 225 | 7 | 0 | 1 | 225 | 19 | 243 | 3.37e-163 | 450 |
| MS.gene22645.t1 | MTR_5g092870 | 77.523 | 218 | 45 | 2 | 1 | 214 | 19 | 236 | 4.35e-121 | 344 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22645.t1 | AT1G28490 | 66.960 | 227 | 73 | 2 | 1 | 225 | 19 | 245 | 3.55e-104 | 301 |
| MS.gene22645.t1 | AT1G28490 | 70.000 | 190 | 56 | 1 | 37 | 225 | 11 | 200 | 7.63e-90 | 263 |
| MS.gene22645.t1 | AT1G28490 | 68.159 | 201 | 58 | 2 | 26 | 225 | 11 | 206 | 1.58e-89 | 263 |
Find 45 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTACGAAGGAGGTTCTTTC+TGG | 0.134337 | 3.4:-49141136 | MS.gene22645:CDS |
| TCTAGTACAACAAGCATTAA+TGG | 0.260115 | 3.4:-49139883 | MS.gene22645:CDS |
| CATTATCATTGGCAGCATTC+TGG | 0.303561 | 3.4:+49139806 | None:intergenic |
| TTGCTGCCAGAGAACCTTCT+TGG | 0.313236 | 3.4:-49140151 | MS.gene22645:CDS |
| TGATAGAAAGGTGGATGAAT+TGG | 0.324293 | 3.4:-49140189 | MS.gene22645:intron |
| AATGAAATCATCATTATCAT+TGG | 0.404484 | 3.4:+49139795 | None:intergenic |
| CTAGTACAACAAGCATTAAT+GGG | 0.413684 | 3.4:-49139882 | MS.gene22645:CDS |
| CATGATGATACTGGCCTTGT+TGG | 0.423247 | 3.4:-49138703 | MS.gene22645:CDS |
| GGGCCAGATCATGATGATAC+TGG | 0.433608 | 3.4:-49138712 | MS.gene22645:CDS |
| GTTGGATGCATAAGGTTGAT+AGG | 0.437167 | 3.4:+49139828 | None:intergenic |
| CCGGTAGCCTCATTAGTTCT+CGG | 0.445818 | 3.4:+49139854 | None:intergenic |
| GCATTCTGGTTGGATGCATA+AGG | 0.451104 | 3.4:+49139820 | None:intergenic |
| GACAAGCAGTGCTCGTACTC+AGG | 0.468891 | 3.4:-49140087 | MS.gene22645:intron |
| GCCAAGGAGTTCTTCATGTA+TGG | 0.471199 | 3.4:+49139193 | None:intergenic |
| CTCAAATTCAAACCTGGCCA+AGG | 0.481619 | 3.4:+49139177 | None:intergenic |
| GCCATACCAAGAAGGTTCTC+TGG | 0.485751 | 3.4:+49140145 | None:intergenic |
| TATTTGGGCTGATAGGCAAC+AGG | 0.487675 | 3.4:-49139273 | MS.gene22645:intron |
| ATGAAGAAAACAGTGGATGC+TGG | 0.500370 | 3.4:-49139913 | MS.gene22645:CDS |
| AGTTTAAGCGTACAAAGAAT+CGG | 0.501912 | 3.4:-49139230 | MS.gene22645:CDS |
| GGCTGATAGGCAACAGGATG+AGG | 0.505234 | 3.4:-49139267 | MS.gene22645:intron |
| AGATTGAAAATCGGAGGAGA+TGG | 0.505923 | 3.4:-49140109 | MS.gene22645:CDS |
| ACAGTAACATTGACTAGGTA+AGG | 0.514747 | 3.4:+49138649 | None:intergenic |
| ACATGAAGAACTCCTTGGCC+AGG | 0.518816 | 3.4:-49139189 | MS.gene22645:intron |
| GCCAGAGAACCTTCTTGGTA+TGG | 0.522757 | 3.4:-49140146 | MS.gene22645:CDS |
| GCATAAGGTTGATAGGAATC+CGG | 0.527293 | 3.4:+49139835 | None:intergenic |
| AGGCCAGTATCATCATGATC+TGG | 0.529006 | 3.4:+49138709 | None:intergenic |
| ATGTGAAAGCGTAGAATGGC+AGG | 0.533008 | 3.4:-49141113 | MS.gene22645:intron |
| ATGATGCTGAGATTGAAAAT+CGG | 0.537272 | 3.4:-49140118 | MS.gene22645:CDS |
| CTGGATGTGAAAGCGTAGAA+TGG | 0.546832 | 3.4:-49141117 | MS.gene22645:CDS |
| ATCATTGGCAGCATTCTGGT+TGG | 0.560569 | 3.4:+49139810 | None:intergenic |
| GAAAAGATTATAGATGAACT+TGG | 0.564446 | 3.4:-49139033 | MS.gene22645:CDS |
| GTACAAAGAATCGGAGGCGT+TGG | 0.564486 | 3.4:-49139221 | MS.gene22645:CDS |
| GAAAATGAACAAGGCCAACA+AGG | 0.572030 | 3.4:+49138689 | None:intergenic |
| ACCATACATGAAGAACTCCT+TGG | 0.572624 | 3.4:-49139194 | MS.gene22645:CDS |
| CCGAGAACTAATGAGGCTAC+CGG | 0.587919 | 3.4:-49139854 | MS.gene22645:CDS |
| GGATGCACCGAGAACTAATG+AGG | 0.594871 | 3.4:-49139861 | MS.gene22645:CDS |
| ATGAAGAAAGCTAGTGCGAA+GGG | 0.599205 | 3.4:-49138732 | MS.gene22645:CDS |
| AGATGAACTTGGTAACGAGA+TGG | 0.600755 | 3.4:-49139022 | MS.gene22645:CDS |
| TCATCAATGCCATACCAAGA+AGG | 0.603070 | 3.4:+49140137 | None:intergenic |
| TATGAAGAAAGCTAGTGCGA+AGG | 0.624609 | 3.4:-49138733 | MS.gene22645:CDS |
| GAAAGTACGTGTTACGAAGG+AGG | 0.625731 | 3.4:-49141146 | MS.gene22645:CDS |
| ATGCTGAGATTGAAAATCGG+AGG | 0.637923 | 3.4:-49140115 | MS.gene22645:CDS |
| TGGCACAATGAAGAAAACAG+TGG | 0.692931 | 3.4:-49139920 | MS.gene22645:CDS |
| AGAGAAAGTACGTGTTACGA+AGG | 0.698114 | 3.4:-49141149 | MS.gene22645:CDS |
| TTAAGCGTACAAAGAATCGG+AGG | 0.705397 | 3.4:-49139227 | MS.gene22645:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACTAAAATATTAAACAAAA+AGG | + | chr3.4:49140554-49140573 | None:intergenic | 10.0% |
| !! | ACTAAAATATTAAACAAAAA+GGG | + | chr3.4:49140553-49140572 | None:intergenic | 10.0% |
| !!! | GATTTATTTTATATCTATTT+GGG | - | chr3.4:49140576-49140595 | MS.gene22645:intron | 10.0% |
| !!! | TGATTTATTTTATATCTATT+TGG | - | chr3.4:49140575-49140594 | MS.gene22645:intron | 10.0% |
| !! | TAAAAAACATGAAAATACAA+TGG | - | chr3.4:49140473-49140492 | MS.gene22645:intron | 15.0% |
| !!! | AAGCTTTAAAATAACTTAAA+AGG | + | chr3.4:49138933-49138952 | None:intergenic | 15.0% |
| !!! | AGCTTTAAAATAACTTAAAA+GGG | + | chr3.4:49138932-49138951 | None:intergenic | 15.0% |
| !!! | TTTTCATGTTTTTTACATTA+TGG | + | chr3.4:49140468-49140487 | None:intergenic | 15.0% |
| !! | AATAGTTTAGAAATTTGTCT+GGG | - | chr3.4:49140498-49140517 | MS.gene22645:intron | 20.0% |
| !! | AATGAAATCATCATTATCAT+TGG | + | chr3.4:49140072-49140091 | None:intergenic | 20.0% |
| !! | GGTATTAAGAATAATAAACT+CGG | + | chr3.4:49139027-49139046 | None:intergenic | 20.0% |
| !! | TGGAATCAGAAATAAATATA+AGG | - | chr3.4:49140429-49140448 | MS.gene22645:intron | 20.0% |
| !!! | AGTATTTTGTTTTGATAGAA+AGG | - | chr3.4:49139663-49139682 | MS.gene22645:intron | 20.0% |
| !!! | ATTTTAAAGCTTACTTTTCT+AGG | - | chr3.4:49138941-49138960 | MS.gene22645:intron | 20.0% |
| !!! | GATTTTTATTCACATTTGTT+TGG | - | chr3.4:49139315-49139334 | MS.gene22645:intron | 20.0% |
| ! | AAACAAAATACTTCAGCATT+TGG | + | chr3.4:49139655-49139674 | None:intergenic | 25.0% |
| ! | ACTCATATAATCTTGTAAAG+AGG | - | chr3.4:49141061-49141080 | MS.gene22645:intron | 25.0% |
| ! | AGATTACTGTTGTGAAATAA+TGG | - | chr3.4:49141000-49141019 | MS.gene22645:intron | 25.0% |
| ! | ATTAAAACTCATAACTGAGA+TGG | - | chr3.4:49140382-49140401 | MS.gene22645:intron | 25.0% |
| ! | ATTATTCTTAATACCACTGT+TGG | - | chr3.4:49139032-49139051 | MS.gene22645:CDS | 25.0% |
| ! | ATTCCATAACGAAAGAAAAA+AGG | + | chr3.4:49140415-49140434 | None:intergenic | 25.0% |
| ! | CAATAGTTTAGAAATTTGTC+TGG | - | chr3.4:49140497-49140516 | MS.gene22645:intron | 25.0% |
| ! | CAATGAATTGGAAAAGAAAA+TGG | + | chr3.4:49139843-49139862 | None:intergenic | 25.0% |
| ! | GAAAAATAGGAAAATGAACA+AGG | + | chr3.4:49141187-49141206 | None:intergenic | 25.0% |
| ! | GAAAAGATTATAGATGAACT+TGG | - | chr3.4:49140831-49140850 | MS.gene22645:intron | 25.0% |
| ! | TAAGGAAGACTAAGAAAAAT+AGG | + | chr3.4:49141200-49141219 | None:intergenic | 25.0% |
| ! | TAGATGTGTTAAATAGTCAA+GGG | + | chr3.4:49139155-49139174 | None:intergenic | 25.0% |
| ! | TCAAAGAGAAAATGAAAACT+AGG | + | chr3.4:49140913-49140932 | None:intergenic | 25.0% |
| ! | TGACAAAGACAAAATTACAA+AGG | + | chr3.4:49140770-49140789 | None:intergenic | 25.0% |
| ! | TTAGATGTGTTAAATAGTCA+AGG | + | chr3.4:49139156-49139175 | None:intergenic | 25.0% |
| ! | TTATTCTTAATACCACTGTT+GGG | - | chr3.4:49139033-49139052 | MS.gene22645:CDS | 25.0% |
| ! | TTTAAATTATATCCCAACAG+TGG | + | chr3.4:49139048-49139067 | None:intergenic | 25.0% |
| !! | CATCTTTCTTTTCTTTACTT+TGG | - | chr3.4:49140171-49140190 | MS.gene22645:CDS | 25.0% |
| !! | GCTAATATTTAGTTCATGTT+TGG | - | chr3.4:49140342-49140361 | MS.gene22645:intron | 25.0% |
| !! | TTTCTAGGTTCATCTAATTT+TGG | - | chr3.4:49138956-49138975 | MS.gene22645:intron | 25.0% |
| !! | TTTTACATTATGGTTACGTA+AGG | + | chr3.4:49140458-49140477 | None:intergenic | 25.0% |
| !!! | ATTTTGTTTTGATAGAAAGG+TGG | - | chr3.4:49139666-49139685 | MS.gene22645:intron | 25.0% |
| !!! | TTTCCTTTTTTCTTTCGTTA+TGG | - | chr3.4:49140409-49140428 | MS.gene22645:intron | 25.0% |
| ACAACTACTACACAATGAAT+TGG | + | chr3.4:49139855-49139874 | None:intergenic | 30.0% | |
| ACACATCTAAGTATAACTCA+AGG | - | chr3.4:49139166-49139185 | MS.gene22645:intron | 30.0% | |
| AGATGTGTTAAATAGTCAAG+GGG | + | chr3.4:49139154-49139173 | None:intergenic | 30.0% | |
| AGTTTAAGCGTACAAAGAAT+CGG | - | chr3.4:49140634-49140653 | MS.gene22645:intron | 30.0% | |
| ATGATGCTGAGATTGAAAAT+CGG | - | chr3.4:49139746-49139765 | MS.gene22645:intron | 30.0% | |
| ATTAGACAAGCTTAATGCTA+CGG | + | chr3.4:49139464-49139483 | None:intergenic | 30.0% | |
| CTAGTACAACAAGCATTAAT+GGG | - | chr3.4:49139982-49140001 | MS.gene22645:intron | 30.0% | |
| CTCTCTAAATCTTATGTAAC+TGG | - | chr3.4:49140142-49140161 | MS.gene22645:CDS | 30.0% | |
| TACATAAGATTTAGAGAGAG+AGG | + | chr3.4:49140140-49140159 | None:intergenic | 30.0% | |
| TATGTAGAGTCGTTGAAAAA+TGG | - | chr3.4:49138791-49138810 | MS.gene22645:intron | 30.0% | |
| TCAGCATTTGGTTATAGATT+AGG | + | chr3.4:49139643-49139662 | None:intergenic | 30.0% | |
| TCTAAGTATAACTCAAGGAT+AGG | - | chr3.4:49139171-49139190 | MS.gene22645:intron | 30.0% | |
| TCTAGTACAACAAGCATTAA+TGG | - | chr3.4:49139981-49140000 | MS.gene22645:intron | 30.0% | |
| TGATTCCTTTCTTGCTTAAT+AGG | - | chr3.4:49139920-49139939 | MS.gene22645:CDS | 30.0% | |
| TGTCAAAATCTTATTGCTTC+AGG | - | chr3.4:49140809-49140828 | MS.gene22645:intron | 30.0% | |
| TTATATCTATTTGGGCTGAT+AGG | - | chr3.4:49140584-49140603 | MS.gene22645:intron | 30.0% | |
| ! | AGACAAAATTACAAAGGCAT+AGG | + | chr3.4:49140764-49140783 | None:intergenic | 30.0% |
| ! | AGCAAAAGTCACTTTAAATG+AGG | + | chr3.4:49140206-49140225 | None:intergenic | 30.0% |
| ! | ATTTTGCTTGCAGAAAAAAG+TGG | - | chr3.4:49141101-49141120 | MS.gene22645:intron | 30.0% |
| !! | AATGTATGCCCAATTTTAGT+TGG | - | chr3.4:49139807-49139826 | MS.gene22645:CDS | 30.0% |
| !!! | ATGTATGCCCAATTTTAGTT+GGG | - | chr3.4:49139808-49139827 | MS.gene22645:CDS | 30.0% |
| AAAGAGTGAAGAGTTGAGAA+TGG | - | chr3.4:49139339-49139358 | MS.gene22645:intron | 35.0% | |
| AAAGCTCTCAAATTCAAACC+TGG | + | chr3.4:49140696-49140715 | None:intergenic | 35.0% | |
| GATTTGGATAGGAAAGCAAA+GGG | + | chr3.4:49139219-49139238 | None:intergenic | 35.0% | |
| GCATCTTCCCAACTAAAATT+GGG | + | chr3.4:49139818-49139837 | None:intergenic | 35.0% | |
| TCCTTTCTTGCTTAATAGGT+TGG | - | chr3.4:49139924-49139943 | MS.gene22645:CDS | 35.0% | |
| TGATAGAAAGGTGGATGAAT+TGG | - | chr3.4:49139675-49139694 | MS.gene22645:intron | 35.0% | |
| TGCATCTTCCCAACTAAAAT+TGG | + | chr3.4:49139819-49139838 | None:intergenic | 35.0% | |
| TGTGTAATGAATGTAGCCTA+AGG | + | chr3.4:49139557-49139576 | None:intergenic | 35.0% | |
| TGTTAAATAGTCAAGGGGAA+GGG | + | chr3.4:49139149-49139168 | None:intergenic | 35.0% | |
| ! | ACTTTTGGATGGTTTCTGTT+GGG | - | chr3.4:49138881-49138900 | MS.gene22645:intron | 35.0% |
| ! | TTCATATTTTACAGCTTCCC+CGG | + | chr3.4:49139266-49139285 | None:intergenic | 35.0% |
| !! | TGCAATCTACTTTTGAGCAA+TGG | - | chr3.4:49138672-49138691 | MS.gene22645:CDS | 35.0% |
| ACCATACATGAAGAACTCCT+TGG | - | chr3.4:49140670-49140689 | MS.gene22645:intron | 40.0% | |
| ACTAGGTGAAGAAACTCACT+TGG | + | chr3.4:49140896-49140915 | None:intergenic | 40.0% | |
| AGATTGAAAATCGGAGGAGA+TGG | - | chr3.4:49139755-49139774 | MS.gene22645:intron | 40.0% | |
| ATGAAGAAAACAGTGGATGC+TGG | - | chr3.4:49139951-49139970 | MS.gene22645:intron | 40.0% | |
| ATGAAGAAAGCTAGTGCGAA+GGG | - | chr3.4:49141132-49141151 | MS.gene22645:CDS | 40.0% | |
| ATGCTGAGATTGAAAATCGG+AGG | - | chr3.4:49139749-49139768 | MS.gene22645:intron | 40.0% | |
| ATTAGTCACACATGCAGACA+CGG | + | chr3.4:49140247-49140266 | None:intergenic | 40.0% | |
| ATTCCATTCTTCGTCCTTCT+CGG | - | chr3.4:49139602-49139621 | MS.gene22645:intron | 40.0% | |
| CACAGAATTAAAGACCGAGA+AGG | + | chr3.4:49139619-49139638 | None:intergenic | 40.0% | |
| CATTATCATTGGCAGCATTC+TGG | + | chr3.4:49140061-49140080 | None:intergenic | 40.0% | |
| CTACACAAGTCCCAAAAATG+CGG | - | chr3.4:49139392-49139411 | MS.gene22645:intron | 40.0% | |
| CTGGGCATACTTATGATTTC+TGG | - | chr3.4:49140516-49140535 | MS.gene22645:intron | 40.0% | |
| CTTCTCGGTCTTTAATTCTG+TGG | - | chr3.4:49139617-49139636 | MS.gene22645:intron | 40.0% | |
| CTTGCAGAAAAAAGTGGCAA+TGG | - | chr3.4:49141107-49141126 | MS.gene22645:intron | 40.0% | |
| GAAAATGAACAAGGCCAACA+AGG | + | chr3.4:49141178-49141197 | None:intergenic | 40.0% | |
| GCCAACCTATTAAGCAAGAA+AGG | + | chr3.4:49139928-49139947 | None:intergenic | 40.0% | |
| GGATTTGGATAGGAAAGCAA+AGG | + | chr3.4:49139220-49139239 | None:intergenic | 40.0% | |
| GTAATGAATGTAGCCTAAGG+TGG | + | chr3.4:49139554-49139573 | None:intergenic | 40.0% | |
| GTGTTAAATAGTCAAGGGGA+AGG | + | chr3.4:49139150-49139169 | None:intergenic | 40.0% | |
| GTTAAATAGTCAAGGGGAAG+GGG | + | chr3.4:49139148-49139167 | None:intergenic | 40.0% | |
| TACACAAGTCCCAAAAATGC+GGG | - | chr3.4:49139393-49139412 | MS.gene22645:intron | 40.0% | |
| TATGAAGAAAGCTAGTGCGA+AGG | - | chr3.4:49141131-49141150 | MS.gene22645:CDS | 40.0% | |
| TCATCAATGCCATACCAAGA+AGG | + | chr3.4:49139730-49139749 | None:intergenic | 40.0% | |
| TGGCACAATGAAGAAAACAG+TGG | - | chr3.4:49139944-49139963 | MS.gene22645:intron | 40.0% | |
| TTAAGCGTACAAAGAATCGG+AGG | - | chr3.4:49140637-49140656 | MS.gene22645:intron | 40.0% | |
| TTGCTTTCCTATCCAAATCC+TGG | - | chr3.4:49139220-49139239 | MS.gene22645:CDS | 40.0% | |
| ! | AGAGAAAGTACGTGTTACGA+AGG | - | chr3.4:49138715-49138734 | MS.gene22645:CDS | 40.0% |
| ! | GACTTTTGGATGGTTTCTGT+TGG | - | chr3.4:49138880-49138899 | MS.gene22645:intron | 40.0% |
| ! | GTTGGATGCATAAGGTTGAT+AGG | + | chr3.4:49140039-49140058 | None:intergenic | 40.0% |
| !! | AGATGAACTTGGTAACGAGA+TGG | - | chr3.4:49140842-49140861 | MS.gene22645:intron | 40.0% |
| !! | GCATAAGGTTGATAGGAATC+CGG | + | chr3.4:49140032-49140051 | None:intergenic | 40.0% |
| !!! | TTTGCATGAGCACTGACTTT+TGG | - | chr3.4:49138866-49138885 | MS.gene22645:intron | 40.0% |
| AGGCCAGTATCATCATGATC+TGG | + | chr3.4:49141158-49141177 | None:intergenic | 45.0% | |
| ATAGGAAAGCAAAGGGCAAG+AGG | + | chr3.4:49139212-49139231 | None:intergenic | 45.0% | |
| ATCATTGGCAGCATTCTGGT+TGG | + | chr3.4:49140057-49140076 | None:intergenic | 45.0% | |
| CCTAAGGTGGAAAACAGAGT+AGG | + | chr3.4:49139541-49139560 | None:intergenic | 45.0% | |
| CTCAAATTCAAACCTGGCCA+AGG | + | chr3.4:49140690-49140709 | None:intergenic | 45.0% | |
| GCCAAGGAGTTCTTCATGTA+TGG | + | chr3.4:49140674-49140693 | None:intergenic | 45.0% | |
| GGAATCTCCAGGATTTGGAT+AGG | + | chr3.4:49139230-49139249 | None:intergenic | 45.0% | |
| GTCAGTGCTCATGCAAACAA+TGG | + | chr3.4:49138863-49138882 | None:intergenic | 45.0% | |
| GTTACGAAGGAGGTTCTTTC+TGG | - | chr3.4:49138728-49138747 | MS.gene22645:CDS | 45.0% | |
| TATTTGGGCTGATAGGCAAC+AGG | - | chr3.4:49140591-49140610 | MS.gene22645:intron | 45.0% | |
| ! | ATGTGAAAGCGTAGAATGGC+AGG | - | chr3.4:49138751-49138770 | MS.gene22645:CDS | 45.0% |
| ! | CCTACTCTGTTTTCCACCTT+AGG | - | chr3.4:49139538-49139557 | MS.gene22645:intron | 45.0% |
| ! | CTGGATGTGAAAGCGTAGAA+TGG | - | chr3.4:49138747-49138766 | MS.gene22645:CDS | 45.0% |
| ! | GAAAGTACGTGTTACGAAGG+AGG | - | chr3.4:49138718-49138737 | MS.gene22645:CDS | 45.0% |
| ! | GCATTCTGGTTGGATGCATA+AGG | + | chr3.4:49140047-49140066 | None:intergenic | 45.0% |
| ! | TTCACTCCACCCGCATTTTT+GGG | + | chr3.4:49139405-49139424 | None:intergenic | 45.0% |
| ! | TTTCACTCCACCCGCATTTT+TGG | + | chr3.4:49139406-49139425 | None:intergenic | 45.0% |
| !! | CATGATGATACTGGCCTTGT+TGG | - | chr3.4:49141161-49141180 | MS.gene22645:CDS | 45.0% |
| !!! | CATGAGCACTGACTTTTGGA+TGG | - | chr3.4:49138870-49138889 | MS.gene22645:intron | 45.0% |
| ACAAGTCCCAAAAATGCGGG+TGG | - | chr3.4:49139396-49139415 | MS.gene22645:intron | 50.0% | |
| ACATGAAGAACTCCTTGGCC+AGG | - | chr3.4:49140675-49140694 | MS.gene22645:intron | 50.0% | |
| AGACCGAGAAGGACGAAGAA+TGG | + | chr3.4:49139608-49139627 | None:intergenic | 50.0% | |
| CCAAATCCTGGAGATTCCCT+GGG | - | chr3.4:49139232-49139251 | MS.gene22645:CDS | 50.0% | |
| CCGAGAACTAATGAGGCTAC+CGG | - | chr3.4:49140010-49140029 | MS.gene22645:intron | 50.0% | |
| GCCAGAGAACCTTCTTGGTA+TGG | - | chr3.4:49139718-49139737 | MS.gene22645:intron | 50.0% | |
| GCCATACCAAGAAGGTTCTC+TGG | + | chr3.4:49139722-49139741 | None:intergenic | 50.0% | |
| GGATGCACCGAGAACTAATG+AGG | - | chr3.4:49140003-49140022 | MS.gene22645:intron | 50.0% | |
| GGGCCAGATCATGATGATAC+TGG | - | chr3.4:49141152-49141171 | MS.gene22645:CDS | 50.0% | |
| TCCAAATCCTGGAGATTCCC+TGG | - | chr3.4:49139231-49139250 | MS.gene22645:CDS | 50.0% | |
| TTGCTGCCAGAGAACCTTCT+TGG | - | chr3.4:49139713-49139732 | MS.gene22645:intron | 50.0% | |
| ! | CCGGTAGCCTCATTAGTTCT+CGG | + | chr3.4:49140013-49140032 | None:intergenic | 50.0% |
| ! | GAAAGCGTAGAATGGCAGGT+AGG | - | chr3.4:49138755-49138774 | MS.gene22645:intron | 50.0% |
| ! | GTACAAAGAATCGGAGGCGT+TGG | - | chr3.4:49140643-49140662 | MS.gene22645:intron | 50.0% |
| AGCATACCCAGGGAATCTCC+AGG | + | chr3.4:49139241-49139260 | None:intergenic | 55.0% | |
| ATTCCCTGGGTATGCTTGCC+GGG | - | chr3.4:49139245-49139264 | MS.gene22645:CDS | 55.0% | |
| CCCAGGGAATCTCCAGGATT+TGG | + | chr3.4:49139235-49139254 | None:intergenic | 55.0% | |
| GACAAGCAGTGCTCGTACTC+AGG | - | chr3.4:49139777-49139796 | MS.gene22645:CDS | 55.0% | |
| GATTCCCTGGGTATGCTTGC+CGG | - | chr3.4:49139244-49139263 | MS.gene22645:CDS | 55.0% | |
| GGCTGATAGGCAACAGGATG+AGG | - | chr3.4:49140597-49140616 | MS.gene22645:intron | 55.0% | |
| TTCCCCGGCAAGCATACCCA+GGG | + | chr3.4:49139251-49139270 | None:intergenic | 60.0% | |
| TTCCCTGGGTATGCTTGCCG+GGG | - | chr3.4:49139246-49139265 | MS.gene22645:CDS | 60.0% | |
| CTTCCCCGGCAAGCATACCC+AGG | + | chr3.4:49139252-49139271 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 49138662 | 49141224 | 49138662 | ID=MS.gene22645 |
| chr3.4 | mRNA | 49138662 | 49141224 | 49138662 | ID=MS.gene22645.t1;Parent=MS.gene22645 |
| chr3.4 | exon | 49141114 | 49141224 | 49141114 | ID=MS.gene22645.t1.exon1;Parent=MS.gene22645.t1 |
| chr3.4 | CDS | 49141114 | 49141224 | 49141114 | ID=cds.MS.gene22645.t1;Parent=MS.gene22645.t1 |
| chr3.4 | exon | 49140088 | 49140201 | 49140088 | ID=MS.gene22645.t1.exon2;Parent=MS.gene22645.t1 |
| chr3.4 | CDS | 49140088 | 49140201 | 49140088 | ID=cds.MS.gene22645.t1;Parent=MS.gene22645.t1 |
| chr3.4 | exon | 49139760 | 49139944 | 49139760 | ID=MS.gene22645.t1.exon3;Parent=MS.gene22645.t1 |
| chr3.4 | CDS | 49139760 | 49139944 | 49139760 | ID=cds.MS.gene22645.t1;Parent=MS.gene22645.t1 |
| chr3.4 | exon | 49139190 | 49139280 | 49139190 | ID=MS.gene22645.t1.exon4;Parent=MS.gene22645.t1 |
| chr3.4 | CDS | 49139190 | 49139280 | 49139190 | ID=cds.MS.gene22645.t1;Parent=MS.gene22645.t1 |
| chr3.4 | exon | 49138990 | 49139055 | 49138990 | ID=MS.gene22645.t1.exon5;Parent=MS.gene22645.t1 |
| chr3.4 | CDS | 49138990 | 49139055 | 49138990 | ID=cds.MS.gene22645.t1;Parent=MS.gene22645.t1 |
| chr3.4 | exon | 49138662 | 49138772 | 49138662 | ID=MS.gene22645.t1.exon6;Parent=MS.gene22645.t1 |
| chr3.4 | CDS | 49138662 | 49138772 | 49138662 | ID=cds.MS.gene22645.t1;Parent=MS.gene22645.t1 |
| Gene Sequence |
| Protein sequence |
