Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44451.t1 | XP_024636505.1 | 92.2 | 128 | 10 | 0 | 1 | 128 | 1 | 128 | 3.70E-57 | 231.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44451.t1 | G7JF71 | 92.2 | 128 | 10 | 0 | 1 | 128 | 1 | 128 | 2.7e-57 | 231.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene44451 | 0.841214 | 5.44E-58 | -1.69E-46 |
| MS.gene049501 | MS.gene44451 | 0.817664 | 2.93E-52 | -1.69E-46 |
| MS.gene049821 | MS.gene44451 | 0.829452 | 5.11E-55 | -1.69E-46 |
| MS.gene050807 | MS.gene44451 | 0.804737 | 1.87E-49 | -1.69E-46 |
| MS.gene050815 | MS.gene44451 | 0.808446 | 3.08E-50 | -1.69E-46 |
| MS.gene050844 | MS.gene44451 | 0.806315 | 8.73E-50 | -1.69E-46 |
| MS.gene050953 | MS.gene44451 | 0.809251 | 2.08E-50 | -1.69E-46 |
| MS.gene051247 | MS.gene44451 | 0.80186 | 7.38E-49 | -1.69E-46 |
| MS.gene051328 | MS.gene44451 | 0.807193 | 5.70E-50 | -1.69E-46 |
| MS.gene051388 | MS.gene44451 | 0.808164 | 3.54E-50 | -1.69E-46 |
| MS.gene051719 | MS.gene44451 | 0.813925 | 2.00E-51 | -1.69E-46 |
| MS.gene052519 | MS.gene44451 | 0.823286 | 1.50E-53 | -1.69E-46 |
| MS.gene052561 | MS.gene44451 | 0.813311 | 2.73E-51 | -1.69E-46 |
| MS.gene052863 | MS.gene44451 | 0.807007 | 6.24E-50 | -1.69E-46 |
| MS.gene05288 | MS.gene44451 | 0.802436 | 5.62E-49 | -1.69E-46 |
| MS.gene053008 | MS.gene44451 | 0.81513 | 1.08E-51 | -1.69E-46 |
| MS.gene053226 | MS.gene44451 | 0.814734 | 1.33E-51 | -1.69E-46 |
| MS.gene054236 | MS.gene44451 | 0.815046 | 1.13E-51 | -1.69E-46 |
| MS.gene054405 | MS.gene44451 | 0.80219 | 6.31E-49 | -1.69E-46 |
| MS.gene054651 | MS.gene44451 | 0.802106 | 6.57E-49 | -1.69E-46 |
| MS.gene054775 | MS.gene44451 | 0.829968 | 3.83E-55 | -1.69E-46 |
| MS.gene055466 | MS.gene44451 | 0.822129 | 2.79E-53 | -1.69E-46 |
| MS.gene055468 | MS.gene44451 | 0.82009 | 8.24E-53 | -1.69E-46 |
| MS.gene055608 | MS.gene44451 | 0.846782 | 1.75E-59 | -1.69E-46 |
| MS.gene055778 | MS.gene44451 | 0.80403 | 2.63E-49 | -1.69E-46 |
| MS.gene055818 | MS.gene44451 | 0.835346 | 1.77E-56 | -1.69E-46 |
| MS.gene056174 | MS.gene44451 | 0.817425 | 3.32E-52 | -1.69E-46 |
| MS.gene056215 | MS.gene44451 | 0.846098 | 2.69E-59 | -1.69E-46 |
| MS.gene056595 | MS.gene44451 | 0.840031 | 1.11E-57 | -1.69E-46 |
| MS.gene057444 | MS.gene44451 | 0.80459 | 2.01E-49 | -1.69E-46 |
| MS.gene057693 | MS.gene44451 | 0.826091 | 3.28E-54 | -1.69E-46 |
| MS.gene058037 | MS.gene44451 | 0.819943 | 8.90E-53 | -1.69E-46 |
| MS.gene058548 | MS.gene44451 | 0.800837 | 1.19E-48 | -1.69E-46 |
| MS.gene058625 | MS.gene44451 | 0.80574 | 1.15E-49 | -1.69E-46 |
| MS.gene058783 | MS.gene44451 | 0.808812 | 2.58E-50 | -1.69E-46 |
| MS.gene058979 | MS.gene44451 | 0.812267 | 4.62E-51 | -1.69E-46 |
| MS.gene05954 | MS.gene44451 | 0.801495 | 8.77E-49 | -1.69E-46 |
| MS.gene059625 | MS.gene44451 | 0.809818 | 1.57E-50 | -1.69E-46 |
| MS.gene059842 | MS.gene44451 | 0.820634 | 6.18E-53 | -1.69E-46 |
| MS.gene060310 | MS.gene44451 | 0.814506 | 1.49E-51 | -1.69E-46 |
| MS.gene060322 | MS.gene44451 | 0.804362 | 2.24E-49 | -1.69E-46 |
| MS.gene060429 | MS.gene44451 | 0.852147 | 5.59E-61 | -1.69E-46 |
| MS.gene060803 | MS.gene44451 | 0.821277 | 4.40E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44451.t1 | MTR_4g097260 | 92.188 | 128 | 10 | 0 | 1 | 128 | 1 | 128 | 5.19e-82 | 241 |
| MS.gene44451.t1 | MTR_4g097250 | 54.918 | 122 | 41 | 6 | 4 | 121 | 5 | 116 | 3.24e-31 | 111 |
| MS.gene44451.t1 | MTR_3g103290 | 34.146 | 123 | 62 | 5 | 8 | 117 | 9 | 125 | 1.52e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44451.t1 | AT5G65925 | 30.872 | 149 | 80 | 7 | 1 | 133 | 1 | 142 | 1.86e-11 | 60.5 |
Find 47 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGAAAGAATCTTTGTATTC+AGG | 0.218805 | 8.1:+25249813 | MS.gene44451:CDS |
| ACCTTTACCAGGAACCTTAA+TGG | 0.240275 | 8.1:-25247677 | None:intergenic |
| GGTACATGAAGGCACCATTA+AGG | 0.380437 | 8.1:+25247663 | MS.gene44451:CDS |
| CGGAGTCGCAGTGTTGGAAT+TGG | 0.390004 | 8.1:+25247932 | MS.gene44451:CDS |
| GATGAAAATCGTGTTGAGTT+AGG | 0.392028 | 8.1:+25247887 | MS.gene44451:CDS |
| TCATTGTCCGAGCAAAGTTC+AGG | 0.403789 | 8.1:+25249947 | MS.gene44451:CDS |
| ATTGTGGAGGACCTAGAGTT+TGG | 0.411843 | 8.1:+25249753 | MS.gene44451:intron |
| GTAGGACATCCCATGGTTGC+AGG | 0.417097 | 8.1:-25247758 | None:intergenic |
| AGAAAGAATCTTTGTATTCA+GGG | 0.419602 | 8.1:+25249814 | MS.gene44451:CDS |
| CACAAGTGATGATGATTTCA+AGG | 0.436445 | 8.1:+25247832 | MS.gene44451:CDS |
| CACATGTTTAGTTGAGTATG+AGG | 0.436795 | 8.1:+25249788 | MS.gene44451:CDS |
| GAAGGCACCATTAAGGTTCC+TGG | 0.439699 | 8.1:+25247670 | MS.gene44451:CDS |
| CGCAACTTTACTCCTTTCCT+AGG | 0.451673 | 8.1:+25247780 | MS.gene44451:CDS |
| ACCATTAAGGTTCCTGGTAA+AGG | 0.453532 | 8.1:+25247676 | MS.gene44451:CDS |
| GCATCATCTTGCAAAACATC+TGG | 0.473123 | 8.1:-25249837 | None:intergenic |
| CTATGTAGATCCTGCAACCA+TGG | 0.486263 | 8.1:+25247748 | MS.gene44451:CDS |
| GCAAAGGAAGCAAGCTCAGT+AGG | 0.492598 | 8.1:+25247642 | MS.gene44451:CDS |
| AAGGTTCCTGGTAAAGGTAA+AGG | 0.501075 | 8.1:+25247682 | MS.gene44451:CDS |
| TTAAACAGTTATATGAGGAC+TGG | 0.503100 | 8.1:+25249880 | MS.gene44451:CDS |
| GCCACATCCTGAACTTTGCT+CGG | 0.503484 | 8.1:-25249954 | None:intergenic |
| GAGTTAACACTGAAGCTCCT+AGG | 0.519744 | 8.1:-25247797 | None:intergenic |
| AGCAAAGTTCAGGATGTGGC+AGG | 0.526778 | 8.1:+25249957 | MS.gene44451:CDS |
| TCGTAAGGGCTGCGTCACTT+AGG | 0.537263 | 8.1:+25247858 | MS.gene44451:CDS |
| GTGCCTCGGAGTCGCAGTGT+TGG | 0.539129 | 8.1:+25247926 | MS.gene44451:CDS |
| GTAAAGGACATGTACGTCAA+TGG | 0.539882 | 8.1:+25247698 | MS.gene44451:CDS |
| ACATGTCCTTTACCTTTACC+AGG | 0.540520 | 8.1:-25247688 | None:intergenic |
| TTAACAAAAGTATCAACTAA+AGG | 0.543361 | 8.1:-25249861 | None:intergenic |
| ATGATTTCAAGGAACTCGTA+AGG | 0.547916 | 8.1:+25247843 | MS.gene44451:CDS |
| TGAAGATGATGACAATATCA+AGG | 0.548852 | 8.1:+25247985 | MS.gene44451:CDS |
| GAGGACTGGTCTCTAGAGGC+AGG | 0.556687 | 8.1:+25249894 | MS.gene44451:CDS |
| CATCTTCTATGCCAAACTCT+AGG | 0.557545 | 8.1:-25249764 | None:intergenic |
| CATGGTTGCAGGATCTACAT+AGG | 0.567986 | 8.1:-25247747 | None:intergenic |
| TATGTAGATCCTGCAACCAT+GGG | 0.570418 | 8.1:+25247749 | MS.gene44451:CDS |
| TCCGAGCAAAGTTCAGGATG+TGG | 0.575521 | 8.1:+25249953 | MS.gene44451:CDS |
| CTTGAAATCATCATCACTTG+TGG | 0.583473 | 8.1:-25247831 | None:intergenic |
| GTCGCAGTGTTGGAATTGGA+AGG | 0.585409 | 8.1:+25247936 | MS.gene44451:CDS |
| AACACTGAAGCTCCTAGGAA+AGG | 0.606093 | 8.1:-25247792 | None:intergenic |
| GGAAAGGAGTAAAGTTGCGT+AGG | 0.616682 | 8.1:-25247776 | None:intergenic |
| CGAAAGCGATGAAAGTGCCT+CGG | 0.617025 | 8.1:+25247912 | MS.gene44451:CDS |
| CAAGCTCAGTAGGTACATGA+AGG | 0.617983 | 8.1:+25247652 | MS.gene44451:CDS |
| GTAAAGACGCTGATGACAGA+AGG | 0.626953 | 8.1:+25249916 | MS.gene44451:CDS |
| TGATTTCAAGGAACTCGTAA+GGG | 0.632665 | 8.1:+25247844 | MS.gene44451:CDS |
| ATATGAGGACTGGTCTCTAG+AGG | 0.633161 | 8.1:+25249890 | MS.gene44451:CDS |
| AAGTTGCGTAGGACATCCCA+TGG | 0.638342 | 8.1:-25247765 | None:intergenic |
| GGATGTGGCAGGTTTCGACA+AGG | 0.644675 | 8.1:+25249968 | MS.gene44451:CDS |
| GGTTTCGACAAGGTTCACAA+AGG | 0.684347 | 8.1:+25249978 | MS.gene44451:CDS |
| ATTCCAACACTGCGACTCCG+AGG | 0.689214 | 8.1:-25247929 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATACTATTATCATTTATTA+AGG | - | chr8.1:25248771-25248790 | None:intergenic | 10.0% |
| !! | AATCTTAATTAATATGATAT+TGG | + | chr8.1:25248346-25248365 | MS.gene44451:intron | 10.0% |
| !!! | AAATATGTTTTAATTATAAC+AGG | + | chr8.1:25248060-25248079 | MS.gene44451:intron | 10.0% |
| !! | ATATTTATTAACTAAAGTGA+AGG | - | chr8.1:25248248-25248267 | None:intergenic | 15.0% |
| !! | CATAATATACTTACTAAATA+TGG | + | chr8.1:25249615-25249634 | MS.gene44451:intron | 15.0% |
| !! | GAAAAAAAAAAGTTAGTAAA+TGG | - | chr8.1:25248891-25248910 | None:intergenic | 15.0% |
| !! | AATCACAGAATTGTAAAATT+AGG | - | chr8.1:25249264-25249283 | None:intergenic | 20.0% |
| !! | AATCTTACATTGAACATAAT+AGG | - | chr8.1:25249131-25249150 | None:intergenic | 20.0% |
| !! | ACAAATACAAAAGTAATACA+AGG | - | chr8.1:25248387-25248406 | None:intergenic | 20.0% |
| !! | CTATTATCATTTATTAAGGA+AGG | - | chr8.1:25248767-25248786 | None:intergenic | 20.0% |
| !! | GAAATATAAGATTCAAATTG+TGG | + | chr8.1:25249737-25249756 | MS.gene44451:intron | 20.0% |
| !! | GTTTACATATTTCTTATTCA+CGG | + | chr8.1:25248532-25248551 | MS.gene44451:intron | 20.0% |
| !! | TAAGTATATGTAGTTTCTTA+GGG | - | chr8.1:25249074-25249093 | None:intergenic | 20.0% |
| !! | TCAAATATGATTAAAAAGAG+TGG | + | chr8.1:25249483-25249502 | MS.gene44451:intron | 20.0% |
| !! | TTTACATATTTCTTATTCAC+GGG | + | chr8.1:25248533-25248552 | MS.gene44451:intron | 20.0% |
| !!! | AAAGGAAATGTTTTATCTTT+TGG | + | chr8.1:25249996-25250015 | MS.gene44451:CDS | 20.0% |
| !!! | AATGTTTTATCTTTTGGTAT+TGG | + | chr8.1:25250002-25250021 | MS.gene44451:CDS | 20.0% |
| !!! | ACTCTTTTTAATCATATTTG+AGG | - | chr8.1:25249484-25249503 | None:intergenic | 20.0% |
| !!! | AGTTCTTTAAAATGTACTTT+TGG | + | chr8.1:25249161-25249180 | MS.gene44451:intron | 20.0% |
| !!! | TTAACAAAAGTATCAACTAA+AGG | - | chr8.1:25249864-25249883 | None:intergenic | 20.0% |
| !!! | TTTTGTTAAACAGTTATATG+AGG | + | chr8.1:25249875-25249894 | MS.gene44451:CDS | 20.0% |
| ! | AAATTTGGTCAAAATTTGTG+TGG | - | chr8.1:25249410-25249429 | None:intergenic | 25.0% |
| ! | AACAAAACCCTATTGTAAAA+TGG | + | chr8.1:25249195-25249214 | MS.gene44451:intron | 25.0% |
| ! | AATAAAAAGTCAACCATGTT+TGG | - | chr8.1:25249017-25249036 | None:intergenic | 25.0% |
| ! | AATTTGGTCAAAATTTGTGT+GGG | - | chr8.1:25249409-25249428 | None:intergenic | 25.0% |
| ! | ACAAAAAAAGATAAGAGCAA+AGG | + | chr8.1:25247626-25247645 | MS.gene44451:CDS | 25.0% |
| ! | AGAAAGAATCTTTGTATTCA+GGG | + | chr8.1:25249814-25249833 | MS.gene44451:CDS | 25.0% |
| ! | ATATAAGATTCAAATTGTGG+AGG | + | chr8.1:25249740-25249759 | MS.gene44451:intron | 25.0% |
| ! | CTATCATATGTTTACATCTA+GGG | - | chr8.1:25248458-25248477 | None:intergenic | 25.0% |
| ! | GTAAATACTCTTCAGATTAT+AGG | + | chr8.1:25248281-25248300 | MS.gene44451:intron | 25.0% |
| ! | GTAAGTATATGTAGTTTCTT+AGG | - | chr8.1:25249075-25249094 | None:intergenic | 25.0% |
| ! | TAAAGAATAATTGCCTATTC+TGG | - | chr8.1:25249548-25249567 | None:intergenic | 25.0% |
| ! | TTAGTAAATGGTTGAGATTA+AGG | - | chr8.1:25248879-25248898 | None:intergenic | 25.0% |
| ! | TTGAATTGAAAAAGGAGATA+TGG | + | chr8.1:25248959-25248978 | MS.gene44451:intron | 25.0% |
| !! | CTAATTCACTTACATTGTTT+TGG | - | chr8.1:25248213-25248232 | None:intergenic | 25.0% |
| !!! | ATATTTGTTTTCTCTAGTCA+CGG | + | chr8.1:25248424-25248443 | MS.gene44451:intron | 25.0% |
| !!! | TAGCGTGTTACTTTTTTTTA+GGG | - | chr8.1:25249678-25249697 | None:intergenic | 25.0% |
| !!! | TCTTTAAAATGTACTTTTGG+AGG | + | chr8.1:25249164-25249183 | MS.gene44451:intron | 25.0% |
| ACATCAGAAATGAGGTAAAT+TGG | - | chr8.1:25249381-25249400 | None:intergenic | 30.0% | |
| CACAGAATTGTAAAATTAGG+CGG | - | chr8.1:25249261-25249280 | None:intergenic | 30.0% | |
| CCTAGATGTAAACATATGAT+AGG | + | chr8.1:25248456-25248475 | MS.gene44451:intron | 30.0% | |
| CCTATCATATGTTTACATCT+AGG | - | chr8.1:25248459-25248478 | None:intergenic | 30.0% | |
| GAGAAAGAATCTTTGTATTC+AGG | + | chr8.1:25249813-25249832 | MS.gene44451:CDS | 30.0% | |
| TGAAGATGATGACAATATCA+AGG | + | chr8.1:25247985-25248004 | MS.gene44451:CDS | 30.0% | |
| TTAAACAGTTATATGAGGAC+TGG | + | chr8.1:25249880-25249899 | MS.gene44451:CDS | 30.0% | |
| ! | CAACCAAGTTGAATTGAAAA+AGG | + | chr8.1:25248951-25248970 | MS.gene44451:intron | 30.0% |
| ! | TCAATATGCTGGAAGAATTT+TGG | + | chr8.1:25249703-25249722 | MS.gene44451:intron | 30.0% |
| !! | GTTGATTTTATTGCAAAAGC+TGG | + | chr8.1:25248736-25248755 | MS.gene44451:intron | 30.0% |
| !! | TATTTGTTTTCTCTAGTCAC+GGG | + | chr8.1:25248425-25248444 | MS.gene44451:intron | 30.0% |
| !! | TCTGCTTCTAGAATAAAGAA+GGG | - | chr8.1:25248017-25248036 | None:intergenic | 30.0% |
| !! | TTCTGCTTCTAGAATAAAGA+AGG | - | chr8.1:25248018-25248037 | None:intergenic | 30.0% |
| !!! | ACTCAATGCCATTTTACAAT+AGG | - | chr8.1:25249206-25249225 | None:intergenic | 30.0% |
| !!! | CTCAATGCCATTTTACAATA+GGG | - | chr8.1:25249205-25249224 | None:intergenic | 30.0% |
| !!! | GTAGCGTGTTACTTTTTTTT+AGG | - | chr8.1:25249679-25249698 | None:intergenic | 30.0% |
| !!! | TCATCCTCTAGTTTTTCAAT+TGG | + | chr8.1:25249314-25249333 | MS.gene44451:intron | 30.0% |
| !!! | TCTCCTTTTTCAATTCAACT+TGG | - | chr8.1:25248957-25248976 | None:intergenic | 30.0% |
| AAATGTTAACTAGTGTCTCC+GGG | - | chr8.1:25249655-25249674 | None:intergenic | 35.0% | |
| AGGAAAAATCACGAGAACAT+TGG | - | chr8.1:25247730-25247749 | None:intergenic | 35.0% | |
| AGGAAAGCAAGCAATTAACA+TGG | + | chr8.1:25248714-25248733 | MS.gene44451:intron | 35.0% | |
| ATGATTTCAAGGAACTCGTA+AGG | + | chr8.1:25247843-25247862 | MS.gene44451:CDS | 35.0% | |
| CACATGTTTAGTTGAGTATG+AGG | + | chr8.1:25249788-25249807 | MS.gene44451:CDS | 35.0% | |
| CAGAAATGAGGTAAATTGGA+GGG | - | chr8.1:25249377-25249396 | None:intergenic | 35.0% | |
| CTCTTTAAGCTATCCAGAAT+AGG | + | chr8.1:25249532-25249551 | MS.gene44451:intron | 35.0% | |
| CTTGAAATCATCATCACTTG+TGG | - | chr8.1:25247834-25247853 | None:intergenic | 35.0% | |
| GAAATGTTAACTAGTGTCTC+CGG | - | chr8.1:25249656-25249675 | None:intergenic | 35.0% | |
| GATGAAAATCGTGTTGAGTT+AGG | + | chr8.1:25247887-25247906 | MS.gene44451:CDS | 35.0% | |
| TCAGAAATGAGGTAAATTGG+AGG | - | chr8.1:25249378-25249397 | None:intergenic | 35.0% | |
| TCGTCCAATTGAAAAACTAG+AGG | - | chr8.1:25249321-25249340 | None:intergenic | 35.0% | |
| TGATTTCAAGGAACTCGTAA+GGG | + | chr8.1:25247844-25247863 | MS.gene44451:CDS | 35.0% | |
| TGTAAACATATGATAGGCAG+AGG | + | chr8.1:25248462-25248481 | MS.gene44451:intron | 35.0% | |
| ! | AACCTCTTGTTTCAAATGAG+TGG | + | chr8.1:25249288-25249307 | MS.gene44451:intron | 35.0% |
| ! | CACAAGTGATGATGATTTCA+AGG | + | chr8.1:25247832-25247851 | MS.gene44451:CDS | 35.0% |
| ! | TTTCCTATGCTAACTTTTCC+AGG | - | chr8.1:25248700-25248719 | None:intergenic | 35.0% |
| !! | ATTTGTTTTCTCTAGTCACG+GGG | + | chr8.1:25248426-25248445 | MS.gene44451:intron | 35.0% |
| !! | CTGCTTCTAGAATAAAGAAG+GGG | - | chr8.1:25248016-25248035 | None:intergenic | 35.0% |
| AAGGTTCCTGGTAAAGGTAA+AGG | + | chr8.1:25247682-25247701 | MS.gene44451:CDS | 40.0% | |
| AATGTTAACTAGTGTCTCCG+GGG | - | chr8.1:25249654-25249673 | None:intergenic | 40.0% | |
| ACATGTCCTTTACCTTTACC+AGG | - | chr8.1:25247691-25247710 | None:intergenic | 40.0% | |
| ACCATTAAGGTTCCTGGTAA+AGG | + | chr8.1:25247676-25247695 | MS.gene44451:CDS | 40.0% | |
| ACCTTTACCAGGAACCTTAA+TGG | - | chr8.1:25247680-25247699 | None:intergenic | 40.0% | |
| ACGCTACTCATTCAATATGC+TGG | + | chr8.1:25249692-25249711 | MS.gene44451:intron | 40.0% | |
| AGTCAACCATGTTTGGTATG+TGG | - | chr8.1:25249010-25249029 | None:intergenic | 40.0% | |
| ATCGTCTTACCCAAAACATG+GGG | + | chr8.1:25248810-25248829 | MS.gene44451:intron | 40.0% | |
| CACGAAAGAATGAAGATGAG+AGG | - | chr8.1:25248844-25248863 | None:intergenic | 40.0% | |
| CATATTTGCTCTACTGCGAA+TGG | - | chr8.1:25248047-25248066 | None:intergenic | 40.0% | |
| CATCTTCTATGCCAAACTCT+AGG | - | chr8.1:25249767-25249786 | None:intergenic | 40.0% | |
| CTTCCTGGAAAAGTTAGCAT+AGG | + | chr8.1:25248694-25248713 | MS.gene44451:intron | 40.0% | |
| GAGAATCCACATACCAAACA+TGG | + | chr8.1:25249001-25249020 | MS.gene44451:intron | 40.0% | |
| GAGATATGGCTGAACCAAAA+GGG | + | chr8.1:25248973-25248992 | MS.gene44451:intron | 40.0% | |
| GATCGTCTTACCCAAAACAT+GGG | + | chr8.1:25248809-25248828 | MS.gene44451:intron | 40.0% | |
| GCATCATCTTGCAAAACATC+TGG | - | chr8.1:25249840-25249859 | None:intergenic | 40.0% | |
| GGGTTATGACATCAGAAATG+AGG | - | chr8.1:25249389-25249408 | None:intergenic | 40.0% | |
| GTAAAGGACATGTACGTCAA+TGG | + | chr8.1:25247698-25247717 | MS.gene44451:CDS | 40.0% | |
| TATGTAGATCCTGCAACCAT+GGG | + | chr8.1:25247749-25247768 | MS.gene44451:CDS | 40.0% | |
| TCAGATTATAGGTGAAGCGT+GGG | + | chr8.1:25248292-25248311 | MS.gene44451:intron | 40.0% | |
| TGATCGTCTTACCCAAAACA+TGG | + | chr8.1:25248808-25248827 | MS.gene44451:intron | 40.0% | |
| TTACCCAAAACATGGGGATT+TGG | + | chr8.1:25248816-25248835 | MS.gene44451:intron | 40.0% | |
| TTCAGATTATAGGTGAAGCG+TGG | + | chr8.1:25248291-25248310 | MS.gene44451:intron | 40.0% | |
| TTTGGTATGTGGATTCTCTC+CGG | - | chr8.1:25248999-25249018 | None:intergenic | 40.0% | |
| ! | CACCACTCATTTGAAACAAG+AGG | - | chr8.1:25249293-25249312 | None:intergenic | 40.0% |
| ! | GATCCAAATCCCCATGTTTT+GGG | - | chr8.1:25248822-25248841 | None:intergenic | 40.0% |
| !! | ATAGCTTAAAGAGTGCTTCG+GGG | - | chr8.1:25249525-25249544 | None:intergenic | 40.0% |
| !! | GATAGCTTAAAGAGTGCTTC+GGG | - | chr8.1:25249526-25249545 | None:intergenic | 40.0% |
| !! | GGATAGCTTAAAGAGTGCTT+CGG | - | chr8.1:25249527-25249546 | None:intergenic | 40.0% |
| AACACTGAAGCTCCTAGGAA+AGG | - | chr8.1:25247795-25247814 | None:intergenic | 45.0% | |
| ATTGTGGAGGACCTAGAGTT+TGG | + | chr8.1:25249753-25249772 | MS.gene44451:intron | 45.0% | |
| CAAGCTCAGTAGGTACATGA+AGG | + | chr8.1:25247652-25247671 | MS.gene44451:CDS | 45.0% | |
| CATGGTTGCAGGATCTACAT+AGG | - | chr8.1:25247750-25247769 | None:intergenic | 45.0% | |
| CGCAACTTTACTCCTTTCCT+AGG | + | chr8.1:25247780-25247799 | MS.gene44451:CDS | 45.0% | |
| CTATGTAGATCCTGCAACCA+TGG | + | chr8.1:25247748-25247767 | MS.gene44451:CDS | 45.0% | |
| GAGTTAACACTGAAGCTCCT+AGG | - | chr8.1:25247800-25247819 | None:intergenic | 45.0% | |
| GGAAAGGAGTAAAGTTGCGT+AGG | - | chr8.1:25247779-25247798 | None:intergenic | 45.0% | |
| GGAGATATGGCTGAACCAAA+AGG | + | chr8.1:25248972-25248991 | MS.gene44451:intron | 45.0% | |
| GGTTTCGACAAGGTTCACAA+AGG | + | chr8.1:25249978-25249997 | MS.gene44451:CDS | 45.0% | |
| GTAAAGACGCTGATGACAGA+AGG | + | chr8.1:25249916-25249935 | MS.gene44451:CDS | 45.0% | |
| TCATTGTCCGAGCAAAGTTC+AGG | + | chr8.1:25249947-25249966 | MS.gene44451:CDS | 45.0% | |
| ! | GGATCCAAATCCCCATGTTT+TGG | - | chr8.1:25248823-25248842 | None:intergenic | 45.0% |
| !! | ATATGAGGACTGGTCTCTAG+AGG | + | chr8.1:25249890-25249909 | MS.gene44451:CDS | 45.0% |
| !! | GGTACATGAAGGCACCATTA+AGG | + | chr8.1:25247663-25247682 | MS.gene44451:CDS | 45.0% |
| !! | TAGCTTAAAGAGTGCTTCGG+GGG | - | chr8.1:25249524-25249543 | None:intergenic | 45.0% |
| !!! | GATATAATTTATTTAAAATT+TGG | - | chr8.1:25249425-25249444 | None:intergenic | 5.0% |
| AAGTTGCGTAGGACATCCCA+TGG | - | chr8.1:25247768-25247787 | None:intergenic | 50.0% | |
| AGCAAAGTTCAGGATGTGGC+AGG | + | chr8.1:25249957-25249976 | MS.gene44451:CDS | 50.0% | |
| GCAAAGGAAGCAAGCTCAGT+AGG | + | chr8.1:25247642-25247661 | MS.gene44451:CDS | 50.0% | |
| GCCACATCCTGAACTTTGCT+CGG | - | chr8.1:25249957-25249976 | None:intergenic | 50.0% | |
| TATGGCTGAACCAAAAGGGC+CGG | + | chr8.1:25248977-25248996 | MS.gene44451:intron | 50.0% | |
| TCCGAGCAAAGTTCAGGATG+TGG | + | chr8.1:25249953-25249972 | MS.gene44451:CDS | 50.0% | |
| TGTTAGTGGGGCTTACTTCC+TGG | + | chr8.1:25248679-25248698 | MS.gene44451:intron | 50.0% | |
| ! | ACTCTCGAGAGCGTGTTAGT+GGG | + | chr8.1:25248666-25248685 | MS.gene44451:intron | 50.0% |
| ! | GTCGCAGTGTTGGAATTGGA+AGG | + | chr8.1:25247936-25247955 | MS.gene44451:CDS | 50.0% |
| ! | TACTCTCGAGAGCGTGTTAG+TGG | + | chr8.1:25248665-25248684 | MS.gene44451:intron | 50.0% |
| !! | ATGGTCCTTAAAGAGTGCCC+CGG | + | chr8.1:25249634-25249653 | MS.gene44451:intron | 50.0% |
| !! | CGAAAGCGATGAAAGTGCCT+CGG | + | chr8.1:25247912-25247931 | MS.gene44451:CDS | 50.0% |
| !! | GAAGGCACCATTAAGGTTCC+TGG | + | chr8.1:25247670-25247689 | MS.gene44451:CDS | 50.0% |
| ATTCCAACACTGCGACTCCG+AGG | - | chr8.1:25247932-25247951 | None:intergenic | 55.0% | |
| GGATGTGGCAGGTTTCGACA+AGG | + | chr8.1:25249968-25249987 | MS.gene44451:CDS | 55.0% | |
| GTAGGACATCCCATGGTTGC+AGG | - | chr8.1:25247761-25247780 | None:intergenic | 55.0% | |
| TCGTAAGGGCTGCGTCACTT+AGG | + | chr8.1:25247858-25247877 | MS.gene44451:CDS | 55.0% | |
| ! | CGGAGTCGCAGTGTTGGAAT+TGG | + | chr8.1:25247932-25247951 | MS.gene44451:CDS | 55.0% |
| ! | CTCTCGAGAGCGTGTTAGTG+GGG | + | chr8.1:25248667-25248686 | MS.gene44451:intron | 55.0% |
| ! | TGGATTCTCTCCGGCCCTTT+TGG | - | chr8.1:25248990-25249009 | None:intergenic | 55.0% |
| ! | TGTCTCCGGGGCACTCTTTA+AGG | - | chr8.1:25249642-25249661 | None:intergenic | 55.0% |
| !! | GAGGACTGGTCTCTAGAGGC+AGG | + | chr8.1:25249894-25249913 | MS.gene44451:CDS | 60.0% |
| GTGCCTCGGAGTCGCAGTGT+TGG | + | chr8.1:25247926-25247945 | MS.gene44451:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 25247623 | 25250031 | 25247623 | ID=MS.gene44451 |
| chr8.1 | mRNA | 25247623 | 25250031 | 25247623 | ID=MS.gene44451.t1;Parent=MS.gene44451 |
| chr8.1 | exon | 25247623 | 25248006 | 25247623 | ID=MS.gene44451.t1.exon1;Parent=MS.gene44451.t1 |
| chr8.1 | CDS | 25247623 | 25248006 | 25247623 | ID=cds.MS.gene44451.t1;Parent=MS.gene44451.t1 |
| chr8.1 | exon | 25249762 | 25250031 | 25249762 | ID=MS.gene44451.t1.exon2;Parent=MS.gene44451.t1 |
| chr8.1 | CDS | 25249762 | 25250031 | 25249762 | ID=cds.MS.gene44451.t1;Parent=MS.gene44451.t1 |
| Gene Sequence |
| Protein sequence |
