Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46110.t1 | XP_013448954.1 | 93.6 | 266 | 17 | 0 | 1 | 266 | 1 | 266 | 1.10E-138 | 502.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46110.t1 | P50162 | 57.5 | 268 | 111 | 1 | 1 | 265 | 1 | 268 | 3.5e-82 | 306.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46110.t1 | A0A072U0P7 | 93.6 | 266 | 17 | 0 | 1 | 266 | 1 | 266 | 7.7e-139 | 502.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049260 | MS.gene46110 | 0.828953 | 6.75E-55 | -1.69E-46 |
| MS.gene049297 | MS.gene46110 | 0.802884 | 4.54E-49 | -1.69E-46 |
| MS.gene049758 | MS.gene46110 | 0.818981 | 1.48E-52 | -1.69E-46 |
| MS.gene050128 | MS.gene46110 | 0.811898 | 5.56E-51 | -1.69E-46 |
| MS.gene050301 | MS.gene46110 | 0.80876 | 2.64E-50 | -1.69E-46 |
| MS.gene051240 | MS.gene46110 | 0.811381 | 7.20E-51 | -1.69E-46 |
| MS.gene051662 | MS.gene46110 | 0.806887 | 6.61E-50 | -1.69E-46 |
| MS.gene051663 | MS.gene46110 | 0.808316 | 3.29E-50 | -1.69E-46 |
| MS.gene051789 | MS.gene46110 | 0.832106 | 1.14E-55 | -1.69E-46 |
| MS.gene051860 | MS.gene46110 | 0.800159 | 1.64E-48 | -1.69E-46 |
| MS.gene052178 | MS.gene46110 | 0.856267 | 3.61E-62 | -1.69E-46 |
| MS.gene052600 | MS.gene46110 | 0.833246 | 5.95E-56 | -1.69E-46 |
| MS.gene053074 | MS.gene46110 | 0.8456 | 3.67E-59 | -1.69E-46 |
| MS.gene053204 | MS.gene46110 | 0.811986 | 5.32E-51 | -1.69E-46 |
| MS.gene053557 | MS.gene46110 | 0.811977 | 5.34E-51 | -1.69E-46 |
| MS.gene053836 | MS.gene46110 | 0.834782 | 2.46E-56 | -1.69E-46 |
| MS.gene054185 | MS.gene46110 | 0.805313 | 1.42E-49 | -1.69E-46 |
| MS.gene054214 | MS.gene46110 | 0.836431 | 9.40E-57 | -1.69E-46 |
| MS.gene054596 | MS.gene46110 | 0.800071 | 1.71E-48 | -1.69E-46 |
| MS.gene054942 | MS.gene46110 | 0.803875 | 2.83E-49 | -1.69E-46 |
| MS.gene055207 | MS.gene46110 | 0.870646 | 1.25E-66 | -1.69E-46 |
| MS.gene055422 | MS.gene46110 | 0.806513 | 7.93E-50 | -1.69E-46 |
| MS.gene055428 | MS.gene46110 | 0.801027 | 1.09E-48 | -1.69E-46 |
| MS.gene055604 | MS.gene46110 | 0.825369 | 4.87E-54 | -1.69E-46 |
| MS.gene057121 | MS.gene46110 | 0.810532 | 1.10E-50 | -1.69E-46 |
| MS.gene057439 | MS.gene46110 | 0.812673 | 3.77E-51 | -1.69E-46 |
| MS.gene057754 | MS.gene46110 | 0.815927 | 7.19E-52 | -1.69E-46 |
| MS.gene058002 | MS.gene46110 | 0.81094 | 8.98E-51 | -1.69E-46 |
| MS.gene05811 | MS.gene46110 | 0.805762 | 1.14E-49 | -1.69E-46 |
| MS.gene058142 | MS.gene46110 | 0.810709 | 1.01E-50 | -1.69E-46 |
| MS.gene058833 | MS.gene46110 | 0.808748 | 2.66E-50 | -1.69E-46 |
| MS.gene059006 | MS.gene46110 | 0.828552 | 8.44E-55 | -1.69E-46 |
| MS.gene059294 | MS.gene46110 | 0.808975 | 2.38E-50 | -1.69E-46 |
| MS.gene059518 | MS.gene46110 | 0.802467 | 5.53E-49 | -1.69E-46 |
| MS.gene05984 | MS.gene46110 | 0.816983 | 4.17E-52 | -1.69E-46 |
| MS.gene059894 | MS.gene46110 | 0.813657 | 2.29E-51 | -1.69E-46 |
| MS.gene060476 | MS.gene46110 | 0.8253 | 5.05E-54 | -1.69E-46 |
| MS.gene061049 | MS.gene46110 | 0.832281 | 1.03E-55 | -1.69E-46 |
| MS.gene061112 | MS.gene46110 | 0.806837 | 6.77E-50 | -1.69E-46 |
| MS.gene061113 | MS.gene46110 | 0.807465 | 4.99E-50 | -1.69E-46 |
| MS.gene061265 | MS.gene46110 | 0.804512 | 2.08E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46110.t1 | MTR_7g063360 | 93.609 | 266 | 17 | 0 | 1 | 266 | 1 | 266 | 0.0 | 516 |
| MS.gene46110.t1 | MTR_7g063390 | 87.594 | 266 | 33 | 0 | 1 | 266 | 1 | 266 | 9.30e-178 | 490 |
| MS.gene46110.t1 | MTR_7g063260 | 78.491 | 265 | 57 | 0 | 1 | 265 | 1 | 265 | 1.58e-152 | 426 |
| MS.gene46110.t1 | MTR_7g063330 | 76.981 | 265 | 59 | 2 | 1 | 265 | 1 | 263 | 2.86e-150 | 420 |
| MS.gene46110.t1 | MTR_7g063270 | 76.981 | 265 | 60 | 1 | 1 | 265 | 1 | 264 | 5.66e-150 | 419 |
| MS.gene46110.t1 | MTR_7g063320 | 74.812 | 266 | 66 | 1 | 1 | 266 | 1 | 265 | 4.02e-142 | 400 |
| MS.gene46110.t1 | MTR_3g068070 | 58.712 | 264 | 105 | 1 | 3 | 266 | 2 | 261 | 2.15e-106 | 309 |
| MS.gene46110.t1 | MTR_7g063270 | 60.755 | 265 | 54 | 3 | 1 | 265 | 1 | 215 | 6.30e-105 | 303 |
| MS.gene46110.t1 | MTR_3g068155 | 56.923 | 260 | 108 | 1 | 7 | 266 | 10 | 265 | 2.46e-103 | 301 |
| MS.gene46110.t1 | MTR_4g064883 | 57.812 | 256 | 104 | 2 | 11 | 266 | 9 | 260 | 9.25e-103 | 300 |
| MS.gene46110.t1 | MTR_3g068175 | 56.981 | 265 | 110 | 1 | 2 | 266 | 3 | 263 | 2.59e-102 | 299 |
| MS.gene46110.t1 | MTR_3g068175 | 56.134 | 269 | 110 | 2 | 2 | 266 | 3 | 267 | 5.31e-100 | 293 |
| MS.gene46110.t1 | MTR_3g068085 | 58.566 | 251 | 100 | 1 | 16 | 266 | 15 | 261 | 5.71e-100 | 293 |
| MS.gene46110.t1 | MTR_4g064887 | 54.511 | 266 | 116 | 2 | 1 | 266 | 1 | 261 | 1.56e-98 | 289 |
| MS.gene46110.t1 | MTR_3g068065 | 57.600 | 250 | 102 | 1 | 16 | 265 | 17 | 262 | 1.71e-95 | 282 |
| MS.gene46110.t1 | MTR_4g064883 | 60.406 | 197 | 78 | 0 | 11 | 207 | 9 | 205 | 9.32e-83 | 247 |
| MS.gene46110.t1 | MTR_4g064887 | 55.610 | 205 | 90 | 1 | 1 | 205 | 1 | 204 | 2.79e-77 | 234 |
| MS.gene46110.t1 | MTR_4g132850 | 33.600 | 250 | 157 | 5 | 16 | 264 | 7 | 248 | 1.10e-27 | 107 |
| MS.gene46110.t1 | MTR_7g094510 | 32.692 | 260 | 153 | 8 | 16 | 264 | 6 | 254 | 1.28e-23 | 96.7 |
| MS.gene46110.t1 | MTR_7g094520 | 31.559 | 263 | 160 | 6 | 12 | 264 | 7 | 259 | 1.47e-23 | 96.7 |
| MS.gene46110.t1 | MTR_3g085740 | 28.287 | 251 | 163 | 6 | 22 | 266 | 81 | 320 | 1.44e-22 | 95.1 |
| MS.gene46110.t1 | MTR_7g080410 | 31.183 | 186 | 122 | 4 | 23 | 203 | 45 | 229 | 4.41e-21 | 90.5 |
| MS.gene46110.t1 | MTR_7g080410 | 31.183 | 186 | 122 | 4 | 23 | 203 | 45 | 229 | 7.23e-21 | 90.1 |
| MS.gene46110.t1 | MTR_4g052350 | 30.502 | 259 | 159 | 9 | 16 | 266 | 14 | 259 | 2.30e-19 | 85.5 |
| MS.gene46110.t1 | MTR_8g442750 | 27.237 | 257 | 174 | 4 | 16 | 264 | 14 | 265 | 2.87e-19 | 85.5 |
| MS.gene46110.t1 | MTR_4g058840 | 29.457 | 258 | 171 | 8 | 16 | 266 | 11 | 264 | 3.47e-18 | 82.0 |
| MS.gene46110.t1 | MTR_4g058820 | 29.457 | 258 | 171 | 8 | 16 | 266 | 11 | 264 | 3.47e-18 | 82.0 |
| MS.gene46110.t1 | MTR_4g131740 | 28.462 | 260 | 170 | 7 | 16 | 266 | 40 | 292 | 5.23e-18 | 82.0 |
| MS.gene46110.t1 | MTR_4g058810 | 28.682 | 258 | 173 | 8 | 16 | 266 | 11 | 264 | 5.92e-18 | 81.6 |
| MS.gene46110.t1 | MTR_6g023990 | 28.623 | 276 | 171 | 8 | 1 | 264 | 1 | 262 | 7.24e-18 | 81.3 |
| MS.gene46110.t1 | MTR_1196s0010 | 31.727 | 249 | 151 | 8 | 21 | 264 | 279 | 513 | 2.42e-17 | 81.6 |
| MS.gene46110.t1 | MTR_6g023590 | 28.462 | 260 | 164 | 7 | 16 | 264 | 13 | 261 | 4.06e-17 | 79.0 |
| MS.gene46110.t1 | MTR_1g068955 | 30.385 | 260 | 156 | 8 | 16 | 262 | 14 | 261 | 4.22e-17 | 79.3 |
| MS.gene46110.t1 | MTR_7g105460 | 29.008 | 262 | 162 | 8 | 16 | 266 | 13 | 261 | 3.83e-16 | 76.6 |
| MS.gene46110.t1 | MTR_4g052320 | 29.020 | 255 | 169 | 7 | 16 | 266 | 8 | 254 | 8.47e-16 | 75.5 |
| MS.gene46110.t1 | MTR_4g052340 | 28.016 | 257 | 168 | 7 | 16 | 266 | 14 | 259 | 2.25e-15 | 74.3 |
| MS.gene46110.t1 | MTR_7g083870 | 28.736 | 261 | 167 | 8 | 16 | 265 | 35 | 287 | 9.82e-15 | 72.8 |
| MS.gene46110.t1 | MTR_4g052300 | 28.627 | 255 | 169 | 7 | 16 | 266 | 8 | 253 | 1.06e-14 | 72.4 |
| MS.gene46110.t1 | MTR_1g082760 | 26.154 | 260 | 175 | 7 | 16 | 266 | 40 | 291 | 1.69e-14 | 72.0 |
| MS.gene46110.t1 | MTR_8g044240 | 28.780 | 205 | 134 | 6 | 16 | 210 | 69 | 271 | 1.85e-14 | 72.4 |
| MS.gene46110.t1 | MTR_6g023600 | 28.185 | 259 | 166 | 7 | 16 | 264 | 13 | 261 | 2.15e-14 | 71.6 |
| MS.gene46110.t1 | MTR_7g105590 | 29.630 | 189 | 126 | 5 | 16 | 201 | 8 | 192 | 3.94e-14 | 69.7 |
| MS.gene46110.t1 | MTR_7g113650 | 27.586 | 261 | 170 | 8 | 16 | 266 | 40 | 291 | 4.83e-14 | 70.9 |
| MS.gene46110.t1 | MTR_4g078630 | 27.481 | 262 | 169 | 7 | 16 | 265 | 19 | 271 | 7.22e-14 | 70.1 |
| MS.gene46110.t1 | MTR_7g071680 | 27.473 | 273 | 168 | 8 | 16 | 265 | 29 | 294 | 9.80e-14 | 70.1 |
| MS.gene46110.t1 | MTR_7g110160 | 30.000 | 260 | 150 | 8 | 13 | 266 | 3 | 236 | 2.56e-13 | 68.2 |
| MS.gene46110.t1 | MTR_6g023950 | 27.239 | 268 | 157 | 7 | 16 | 264 | 13 | 261 | 2.75e-13 | 68.6 |
| MS.gene46110.t1 | MTR_7g105580 | 28.906 | 256 | 150 | 11 | 16 | 265 | 8 | 237 | 2.85e-13 | 68.2 |
| MS.gene46110.t1 | MTR_6g023910 | 27.174 | 276 | 174 | 8 | 1 | 264 | 1 | 261 | 3.42e-13 | 68.2 |
| MS.gene46110.t1 | MTR_7g107670 | 29.231 | 260 | 166 | 7 | 16 | 265 | 33 | 284 | 5.94e-13 | 67.8 |
| MS.gene46110.t1 | MTR_6g023600 | 27.799 | 259 | 161 | 7 | 16 | 264 | 13 | 255 | 3.41e-12 | 65.1 |
| MS.gene46110.t1 | MTR_1579s0020 | 34.524 | 84 | 50 | 1 | 182 | 265 | 1 | 79 | 5.50e-12 | 60.8 |
| MS.gene46110.t1 | MTR_3g098470 | 33.108 | 148 | 96 | 3 | 12 | 158 | 28 | 173 | 4.91e-11 | 62.4 |
| MS.gene46110.t1 | MTR_6g088500 | 26.341 | 205 | 130 | 6 | 22 | 206 | 184 | 387 | 5.06e-11 | 62.8 |
| MS.gene46110.t1 | MTR_2g090165 | 27.799 | 259 | 175 | 8 | 13 | 266 | 3 | 254 | 7.60e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46110.t1 | AT5G06060 | 57.031 | 256 | 106 | 1 | 11 | 266 | 4 | 255 | 1.31e-106 | 310 |
| MS.gene46110.t1 | AT1G07440 | 56.031 | 257 | 108 | 1 | 10 | 266 | 6 | 257 | 1.73e-102 | 299 |
| MS.gene46110.t1 | AT2G29340 | 55.039 | 258 | 108 | 2 | 11 | 266 | 2 | 253 | 1.71e-99 | 291 |
| MS.gene46110.t1 | AT2G29340 | 55.039 | 258 | 108 | 2 | 11 | 266 | 2 | 253 | 3.48e-99 | 292 |
| MS.gene46110.t1 | AT2G29320 | 56.538 | 260 | 103 | 4 | 11 | 266 | 7 | 260 | 5.72e-99 | 290 |
| MS.gene46110.t1 | AT2G29260 | 54.118 | 255 | 113 | 1 | 12 | 266 | 64 | 314 | 5.91e-98 | 290 |
| MS.gene46110.t1 | AT2G29290 | 54.297 | 256 | 113 | 1 | 11 | 266 | 2 | 253 | 8.63e-98 | 287 |
| MS.gene46110.t1 | AT2G29300 | 54.406 | 261 | 106 | 3 | 11 | 266 | 2 | 254 | 1.35e-97 | 287 |
| MS.gene46110.t1 | AT2G29360 | 54.478 | 268 | 114 | 2 | 1 | 266 | 1 | 262 | 2.04e-97 | 286 |
| MS.gene46110.t1 | AT2G29300 | 54.615 | 260 | 105 | 3 | 11 | 265 | 2 | 253 | 1.88e-96 | 285 |
| MS.gene46110.t1 | AT2G29330 | 56.250 | 256 | 108 | 1 | 11 | 266 | 2 | 253 | 2.05e-96 | 284 |
| MS.gene46110.t1 | AT2G30670 | 53.077 | 260 | 110 | 2 | 11 | 266 | 2 | 253 | 1.09e-95 | 282 |
| MS.gene46110.t1 | AT2G29350 | 55.253 | 257 | 110 | 1 | 10 | 266 | 9 | 260 | 6.00e-95 | 280 |
| MS.gene46110.t1 | AT2G29310 | 54.264 | 258 | 110 | 2 | 11 | 266 | 2 | 253 | 1.84e-94 | 279 |
| MS.gene46110.t1 | AT2G29150 | 53.704 | 270 | 112 | 4 | 1 | 266 | 1 | 261 | 2.50e-94 | 279 |
| MS.gene46110.t1 | AT1G07450 | 54.118 | 255 | 110 | 3 | 13 | 266 | 5 | 253 | 3.82e-94 | 278 |
| MS.gene46110.t1 | AT2G29370 | 53.962 | 265 | 107 | 3 | 8 | 266 | 7 | 262 | 8.05e-93 | 275 |
| MS.gene46110.t1 | AT2G29320 | 55.042 | 238 | 98 | 3 | 32 | 266 | 11 | 242 | 2.25e-87 | 260 |
| MS.gene46110.t1 | AT2G29290 | 52.137 | 234 | 108 | 1 | 33 | 266 | 7 | 236 | 9.24e-84 | 251 |
| MS.gene46110.t1 | AT2G29310 | 52.321 | 237 | 105 | 2 | 32 | 266 | 21 | 251 | 1.05e-80 | 244 |
| MS.gene46110.t1 | AT2G29340 | 57.071 | 198 | 85 | 0 | 11 | 208 | 2 | 199 | 9.81e-80 | 239 |
| MS.gene46110.t1 | AT2G29340 | 57.071 | 198 | 85 | 0 | 11 | 208 | 2 | 199 | 9.81e-80 | 239 |
| MS.gene46110.t1 | AT2G29320 | 59.487 | 195 | 77 | 2 | 11 | 203 | 7 | 201 | 3.80e-78 | 235 |
| MS.gene46110.t1 | AT2G29350 | 53.097 | 226 | 101 | 1 | 41 | 266 | 2 | 222 | 8.52e-78 | 235 |
| MS.gene46110.t1 | AT2G29350 | 59.184 | 196 | 80 | 0 | 10 | 205 | 9 | 204 | 1.83e-77 | 234 |
| MS.gene46110.t1 | AT2G29310 | 55.556 | 198 | 88 | 0 | 11 | 208 | 2 | 199 | 6.87e-75 | 227 |
| MS.gene46110.t1 | AT1G07440 | 58.537 | 164 | 68 | 0 | 10 | 173 | 6 | 169 | 2.35e-67 | 207 |
| MS.gene46110.t1 | AT2G29310 | 54.023 | 174 | 80 | 0 | 32 | 205 | 21 | 194 | 9.89e-61 | 191 |
| MS.gene46110.t1 | AT2G29170 | 63.542 | 96 | 34 | 1 | 8 | 102 | 7 | 102 | 2.73e-38 | 130 |
| MS.gene46110.t1 | AT3G03980 | 34.074 | 270 | 161 | 4 | 7 | 264 | 5 | 269 | 4.78e-34 | 124 |
| MS.gene46110.t1 | AT5G18210 | 33.721 | 258 | 158 | 6 | 15 | 264 | 7 | 259 | 6.74e-30 | 113 |
| MS.gene46110.t1 | AT4G13180 | 32.558 | 258 | 160 | 5 | 16 | 266 | 13 | 263 | 5.88e-28 | 108 |
| MS.gene46110.t1 | AT5G18210 | 32.692 | 260 | 149 | 7 | 15 | 266 | 7 | 248 | 3.84e-26 | 103 |
| MS.gene46110.t1 | AT4G05530 | 32.400 | 250 | 160 | 5 | 16 | 264 | 9 | 250 | 9.40e-26 | 102 |
| MS.gene46110.t1 | AT1G24360 | 31.873 | 251 | 154 | 8 | 22 | 266 | 80 | 319 | 1.85e-24 | 100 |
| MS.gene46110.t1 | AT3G04000 | 32.258 | 279 | 153 | 6 | 7 | 263 | 5 | 269 | 3.29e-24 | 98.6 |
| MS.gene46110.t1 | AT3G05260 | 31.579 | 266 | 152 | 9 | 16 | 266 | 37 | 287 | 2.03e-20 | 88.6 |
| MS.gene46110.t1 | AT1G54870 | 29.183 | 257 | 165 | 7 | 16 | 263 | 82 | 330 | 2.07e-20 | 89.4 |
| MS.gene46110.t1 | AT1G54870 | 28.846 | 260 | 168 | 7 | 16 | 266 | 84 | 335 | 2.10e-20 | 89.4 |
| MS.gene46110.t1 | AT3G12800 | 25.758 | 264 | 170 | 6 | 16 | 264 | 10 | 262 | 3.82e-20 | 88.2 |
| MS.gene46110.t1 | AT3G03330 | 30.364 | 247 | 150 | 8 | 12 | 252 | 37 | 267 | 1.11e-19 | 87.0 |
| MS.gene46110.t1 | AT3G55290 | 28.626 | 262 | 168 | 10 | 16 | 266 | 17 | 270 | 2.31e-17 | 80.1 |
| MS.gene46110.t1 | AT3G55290 | 28.626 | 262 | 168 | 10 | 16 | 266 | 18 | 271 | 2.41e-17 | 80.1 |
| MS.gene46110.t1 | AT3G06060 | 31.343 | 201 | 127 | 4 | 16 | 211 | 37 | 231 | 2.46e-17 | 80.5 |
| MS.gene46110.t1 | AT3G06060 | 31.343 | 201 | 127 | 4 | 16 | 211 | 54 | 248 | 3.68e-17 | 80.5 |
| MS.gene46110.t1 | AT3G26760 | 29.588 | 267 | 173 | 7 | 9 | 265 | 29 | 290 | 7.57e-17 | 79.0 |
| MS.gene46110.t1 | AT3G55310 | 27.799 | 259 | 174 | 9 | 16 | 266 | 17 | 270 | 3.17e-16 | 77.0 |
| MS.gene46110.t1 | AT3G51680 | 27.915 | 283 | 179 | 8 | 1 | 265 | 20 | 295 | 5.45e-16 | 76.6 |
| MS.gene46110.t1 | AT1G63380 | 25.969 | 258 | 181 | 8 | 16 | 266 | 19 | 273 | 1.41e-15 | 75.1 |
| MS.gene46110.t1 | AT1G63380 | 25.969 | 258 | 181 | 8 | 16 | 266 | 17 | 271 | 1.55e-15 | 75.1 |
| MS.gene46110.t1 | AT1G63380 | 25.969 | 258 | 181 | 8 | 16 | 266 | 15 | 269 | 1.61e-15 | 75.1 |
| MS.gene46110.t1 | AT1G63380 | 25.969 | 258 | 181 | 8 | 16 | 266 | 22 | 276 | 2.14e-15 | 74.7 |
| MS.gene46110.t1 | AT1G62610 | 26.641 | 259 | 178 | 9 | 16 | 266 | 14 | 268 | 3.64e-15 | 73.9 |
| MS.gene46110.t1 | AT1G62610 | 26.641 | 259 | 178 | 9 | 16 | 266 | 15 | 269 | 3.75e-15 | 73.9 |
| MS.gene46110.t1 | AT4G03140 | 27.519 | 258 | 173 | 8 | 16 | 265 | 78 | 329 | 4.01e-15 | 74.3 |
| MS.gene46110.t1 | AT1G62610 | 26.641 | 259 | 178 | 9 | 16 | 266 | 19 | 273 | 4.20e-15 | 73.9 |
| MS.gene46110.t1 | AT1G62610 | 26.641 | 259 | 178 | 9 | 16 | 266 | 13 | 267 | 4.65e-15 | 73.6 |
| MS.gene46110.t1 | AT5G50690 | 29.319 | 191 | 124 | 6 | 16 | 201 | 45 | 229 | 4.95e-15 | 73.2 |
| MS.gene46110.t1 | AT5G50590 | 29.319 | 191 | 124 | 6 | 16 | 201 | 45 | 229 | 4.95e-15 | 73.2 |
| MS.gene46110.t1 | AT5G04900 | 29.353 | 201 | 125 | 7 | 22 | 210 | 83 | 278 | 1.09e-14 | 73.2 |
| MS.gene46110.t1 | AT5G50690 | 29.319 | 191 | 124 | 6 | 16 | 201 | 45 | 229 | 1.58e-14 | 72.4 |
| MS.gene46110.t1 | AT5G50590 | 29.319 | 191 | 124 | 6 | 16 | 201 | 45 | 229 | 1.58e-14 | 72.4 |
| MS.gene46110.t1 | AT3G46170 | 28.077 | 260 | 172 | 9 | 16 | 266 | 26 | 279 | 2.17e-14 | 72.0 |
| MS.gene46110.t1 | AT3G42960 | 30.712 | 267 | 163 | 10 | 11 | 265 | 5 | 261 | 3.30e-14 | 71.2 |
| MS.gene46110.t1 | AT2G47130 | 26.275 | 255 | 177 | 7 | 16 | 266 | 6 | 253 | 3.76e-13 | 67.8 |
| MS.gene46110.t1 | AT4G13250 | 24.473 | 237 | 152 | 6 | 22 | 232 | 165 | 400 | 1.79e-12 | 67.4 |
| MS.gene46110.t1 | AT3G26770 | 28.409 | 264 | 164 | 10 | 16 | 265 | 41 | 293 | 2.01e-12 | 66.2 |
| MS.gene46110.t1 | AT2G17845 | 25.573 | 262 | 179 | 9 | 16 | 266 | 47 | 303 | 2.21e-12 | 66.2 |
| MS.gene46110.t1 | AT3G03350 | 32.051 | 156 | 95 | 4 | 51 | 204 | 207 | 353 | 3.53e-12 | 66.2 |
| MS.gene46110.t1 | AT1G49670 | 30.631 | 222 | 137 | 9 | 18 | 224 | 6 | 225 | 2.53e-11 | 63.9 |
| MS.gene46110.t1 | AT1G49670 | 30.631 | 222 | 137 | 9 | 18 | 224 | 6 | 225 | 2.54e-11 | 63.9 |
| MS.gene46110.t1 | AT5G65205 | 27.869 | 183 | 125 | 4 | 22 | 203 | 12 | 188 | 3.90e-11 | 62.4 |
| MS.gene46110.t1 | AT5G10050 | 27.869 | 183 | 125 | 4 | 22 | 203 | 11 | 187 | 5.01e-11 | 62.0 |
Find 59 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGGAAGAGTTAGCAGAATT+TGG | 0.151126 | 7.2:+41099949 | MS.gene46110:CDS |
| TATAATTAAATTACCTTTAG+AGG | 0.172818 | 7.2:-41101517 | None:intergenic |
| CCATTCCAATGCTAAGTTCT+TGG | 0.203591 | 7.2:-41101669 | None:intergenic |
| CTTCTAAAACAATCTGGATA+TGG | 0.305242 | 7.2:+41101429 | MS.gene46110:CDS |
| TGGAAGAGTTAGCAGAATTT+GGG | 0.308742 | 7.2:+41099950 | MS.gene46110:CDS |
| GATCAAAGATGGTCACTAAA+AGG | 0.312455 | 7.2:+41099774 | MS.gene46110:CDS |
| GTATTATCTATGATGGGTTT+AGG | 0.353458 | 7.2:-41101333 | None:intergenic |
| TTCATCAGTATTATCTATGA+TGG | 0.366382 | 7.2:-41101340 | None:intergenic |
| AGATGATATTAACAAATGTT+TGG | 0.374991 | 7.2:+41100002 | MS.gene46110:CDS |
| GCTGCATAGACAGAATTAAA+AGG | 0.377817 | 7.2:-41101495 | None:intergenic |
| GTATTCATATCCTCAATTGC+AGG | 0.377863 | 7.2:+41101459 | MS.gene46110:CDS |
| GTTCTTGGCGCATTGATTCA+TGG | 0.382444 | 7.2:-41101654 | None:intergenic |
| GGAATGACAGCTCTAGTAAC+TGG | 0.387510 | 7.2:+41099795 | MS.gene46110:CDS |
| GGATAATGTTGTCGAGGATA+TGG | 0.392949 | 7.2:+41108458 | MS.gene46110:CDS |
| CACCCTCTTCTAAAACAATC+TGG | 0.410514 | 7.2:+41101423 | MS.gene46110:CDS |
| TTAACAAATGTTTGGAAGAG+TGG | 0.416511 | 7.2:+41100010 | MS.gene46110:CDS |
| ATGGTAACCAGACACAAAAT+TGG | 0.420948 | 7.2:-41101385 | None:intergenic |
| CACTGTTAGGTAAACAATGC+TGG | 0.424573 | 7.2:+41101300 | MS.gene46110:intron |
| GGCTTTGAGTCCTGCAATTG+AGG | 0.443018 | 7.2:-41101469 | None:intergenic |
| CGTGCTAATGTTGTGGCACC+TGG | 0.445202 | 7.2:+41101707 | MS.gene46110:CDS |
| CGCAGCATTCTCGAAAAGTA+TGG | 0.449584 | 7.2:-41101741 | None:intergenic |
| GAAGATATAACAACTACAAT+TGG | 0.449713 | 7.2:+41101360 | MS.gene46110:CDS |
| TCTGTCTATGCAGCCTCTAA+AGG | 0.465845 | 7.2:+41101504 | MS.gene46110:CDS |
| ATCAATCAGGTATGCAATTG+TGG | 0.492239 | 7.2:+41099930 | MS.gene46110:intron |
| CAATTGCAGGACTCAAAGCC+TGG | 0.498348 | 7.2:+41101472 | MS.gene46110:CDS |
| ACTGGTGGAACCCGAGGCAT+AGG | 0.498705 | 7.2:+41099813 | MS.gene46110:CDS |
| CAAGAACTTAGCATTGGAAT+GGG | 0.501708 | 7.2:+41101670 | MS.gene46110:CDS |
| CCAAGAACTTAGCATTGGAA+TGG | 0.503939 | 7.2:+41101669 | MS.gene46110:CDS |
| GCCAATGCTGATATATCCTT+AGG | 0.509059 | 7.2:-41108513 | None:intergenic |
| TCATCAGTATTATCTATGAT+GGG | 0.517347 | 7.2:-41101339 | None:intergenic |
| ACCTAAGGATATATCAGCAT+TGG | 0.530498 | 7.2:+41108512 | MS.gene46110:CDS |
| GAGAACTGACCCTATGCCTC+GGG | 0.531174 | 7.2:-41099823 | None:intergenic |
| AGTATGGTCATCACAGCTCC+AGG | 0.534605 | 7.2:-41101725 | None:intergenic |
| TGGTCGGATTGGAGAACCTA+AGG | 0.554317 | 7.2:+41108497 | MS.gene46110:CDS |
| CTAACACCTAGTGGTCGGAT+TGG | 0.555165 | 7.2:+41108486 | MS.gene46110:CDS |
| CCAGTGATGTGTGATGCAGC+TGG | 0.556867 | 7.2:-41108552 | None:intergenic |
| GGTTCTCCAATCCGACCACT+AGG | 0.556909 | 7.2:-41108492 | None:intergenic |
| CCAGCTGCATCACACATCAC+TGG | 0.560488 | 7.2:+41108552 | MS.gene46110:CDS |
| TTGGAAGAGTGGAAAGGCAA+AGG | 0.565426 | 7.2:+41100021 | MS.gene46110:CDS |
| ACTGTTAGGTAAACAATGCT+GGG | 0.565713 | 7.2:+41101301 | MS.gene46110:intron |
| ATGCGCCAAGAACTTAGCAT+TGG | 0.567165 | 7.2:+41101664 | MS.gene46110:CDS |
| CTTAGCATTGGAATGGGCAA+AGG | 0.572011 | 7.2:+41101676 | MS.gene46110:CDS |
| AGAGAACTGACCCTATGCCT+CGG | 0.576626 | 7.2:-41099824 | None:intergenic |
| ACTGTTGCATCGATCTTCGA+TGG | 0.578912 | 7.2:+41100108 | MS.gene46110:CDS |
| GCAGCTTCAAAGATCAAAGA+TGG | 0.579135 | 7.2:+41099763 | MS.gene46110:CDS |
| ATAGACAGAATTAAAAGGCC+AGG | 0.582444 | 7.2:-41101490 | None:intergenic |
| TAATATTCGTGCTAATGTTG+TGG | 0.582808 | 7.2:+41101700 | MS.gene46110:CDS |
| CAAATTATAGCTGCAGATGG+AGG | 0.585129 | 7.2:+41108576 | MS.gene46110:CDS |
| GGACAAATTATAGCTGCAGA+TGG | 0.588163 | 7.2:+41108573 | MS.gene46110:CDS |
| CACAATGGATAATGTTGTCG+AGG | 0.592197 | 7.2:+41108452 | MS.gene46110:CDS |
| GGTGTGCAAGTTGACACAAA+TGG | 0.595523 | 7.2:-41101404 | None:intergenic |
| GGAAGAGTTAGCAGAATTTG+GGG | 0.609810 | 7.2:+41099951 | MS.gene46110:CDS |
| CTGGTGGAACCCGAGGCATA+GGG | 0.613722 | 7.2:+41099814 | MS.gene46110:CDS |
| CTAGTAACTGGTGGAACCCG+AGG | 0.629591 | 7.2:+41099807 | MS.gene46110:CDS |
| AAATGTTTGGAAGAGTGGAA+AGG | 0.633316 | 7.2:+41100015 | MS.gene46110:CDS |
| TGTCTCTAACACCTAGTGGT+CGG | 0.659290 | 7.2:+41108481 | MS.gene46110:CDS |
| ATGACAGCTCTAGTAACTGG+TGG | 0.670365 | 7.2:+41099798 | MS.gene46110:CDS |
| ATGGTGTCTCTAACACCTAG+TGG | 0.670463 | 7.2:+41108477 | MS.gene46110:CDS |
| ATAGAAATTAACTAGCACAA+TGG | 0.691182 | 7.2:+41108437 | MS.gene46110:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 41099744 | 41108611 | 41099744 | ID=MS.gene46110 |
| chr7.2 | mRNA | 41099744 | 41108611 | 41099744 | ID=MS.gene46110.t1;Parent=MS.gene46110 |
| chr7.2 | exon | 41099744 | 41099835 | 41099744 | ID=MS.gene46110.t1.exon1;Parent=MS.gene46110.t1 |
| chr7.2 | CDS | 41099744 | 41099835 | 41099744 | ID=cds.MS.gene46110.t1;Parent=MS.gene46110.t1 |
| chr7.2 | exon | 41099939 | 41100146 | 41099939 | ID=MS.gene46110.t1.exon2;Parent=MS.gene46110.t1 |
| chr7.2 | CDS | 41099939 | 41100146 | 41099939 | ID=cds.MS.gene46110.t1;Parent=MS.gene46110.t1 |
| chr7.2 | exon | 41101309 | 41101525 | 41101309 | ID=MS.gene46110.t1.exon3;Parent=MS.gene46110.t1 |
| chr7.2 | CDS | 41101309 | 41101525 | 41101309 | ID=cds.MS.gene46110.t1;Parent=MS.gene46110.t1 |
| chr7.2 | exon | 41101651 | 41101763 | 41101651 | ID=MS.gene46110.t1.exon4;Parent=MS.gene46110.t1 |
| chr7.2 | CDS | 41101651 | 41101763 | 41101651 | ID=cds.MS.gene46110.t1;Parent=MS.gene46110.t1 |
| chr7.2 | exon | 41108441 | 41108611 | 41108441 | ID=MS.gene46110.t1.exon5;Parent=MS.gene46110.t1 |
| chr7.2 | CDS | 41108441 | 41108611 | 41108441 | ID=cds.MS.gene46110.t1;Parent=MS.gene46110.t1 |
| Gene Sequence |
| Protein sequence |
