Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene48050.t1 | XP_003629947.1 | 99.5 | 444 | 2 | 0 | 1 | 444 | 1 | 444 | 2.00E-259 | 904.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene48050.t1 | Q96254 | 85.8 | 444 | 63 | 0 | 1 | 444 | 1 | 444 | 6.0e-228 | 791.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene48050.t1 | G7L8T3 | 99.5 | 444 | 2 | 0 | 1 | 444 | 1 | 444 | 1.5e-259 | 904.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050479 | MS.gene48050 | 0.824455 | 8.00E-54 | -1.69E-46 |
MS.gene050547 | MS.gene48050 | 0.816335 | 5.83E-52 | -1.69E-46 |
MS.gene052015 | MS.gene48050 | 0.835236 | 1.89E-56 | -1.69E-46 |
MS.gene053579 | MS.gene48050 | -0.806312 | 8.75E-50 | -1.69E-46 |
MS.gene054706 | MS.gene48050 | 0.809447 | 1.88E-50 | -1.69E-46 |
MS.gene054742 | MS.gene48050 | 0.803171 | 3.96E-49 | -1.69E-46 |
MS.gene055502 | MS.gene48050 | -0.802601 | 5.19E-49 | -1.69E-46 |
MS.gene055577 | MS.gene48050 | -0.804782 | 1.83E-49 | -1.69E-46 |
MS.gene056678 | MS.gene48050 | 0.809371 | 1.96E-50 | -1.69E-46 |
MS.gene056748 | MS.gene48050 | 0.805013 | 1.64E-49 | -1.69E-46 |
MS.gene057081 | MS.gene48050 | 0.823718 | 1.19E-53 | -1.69E-46 |
MS.gene058544 | MS.gene48050 | -0.818568 | 1.83E-52 | -1.69E-46 |
MS.gene059103 | MS.gene48050 | 0.808036 | 3.77E-50 | -1.69E-46 |
MS.gene05914 | MS.gene48050 | -0.808876 | 2.50E-50 | -1.69E-46 |
MS.gene059480 | MS.gene48050 | 0.811031 | 8.58E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene008351 | MS.gene48050 | PPI |
MS.gene26196 | MS.gene48050 | PPI |
MS.gene024151 | MS.gene48050 | PPI |
MS.gene69853 | MS.gene48050 | PPI |
MS.gene033585 | MS.gene48050 | PPI |
MS.gene27927 | MS.gene48050 | PPI |
MS.gene063577 | MS.gene48050 | PPI |
MS.gene55072 | MS.gene48050 | PPI |
MS.gene030951 | MS.gene48050 | PPI |
MS.gene037879 | MS.gene48050 | PPI |
MS.gene47882 | MS.gene48050 | PPI |
MS.gene99137 | MS.gene48050 | PPI |
MS.gene073174 | MS.gene48050 | PPI |
MS.gene049680 | MS.gene48050 | PPI |
MS.gene79211 | MS.gene48050 | PPI |
MS.gene055394 | MS.gene48050 | PPI |
MS.gene75479 | MS.gene48050 | PPI |
MS.gene017310 | MS.gene48050 | PPI |
MS.gene48050 | MS.gene065419 | PPI |
MS.gene05029 | MS.gene48050 | PPI |
MS.gene47883 | MS.gene48050 | PPI |
MS.gene009580 | MS.gene48050 | PPI |
MS.gene061580 | MS.gene48050 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene48050.t1 | MTR_8g088620 | 99.550 | 444 | 2 | 0 | 1 | 444 | 1 | 444 | 0.0 | 917 |
MS.gene48050.t1 | MTR_4g093980 | 81.193 | 436 | 82 | 0 | 1 | 436 | 1 | 436 | 0.0 | 749 |
MS.gene48050.t1 | MTR_5g024150 | 25.587 | 426 | 235 | 13 | 5 | 356 | 18 | 435 | 1.00e-26 | 113 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene48050.t1 | AT2G44100 | 85.811 | 444 | 63 | 0 | 1 | 444 | 1 | 444 | 0.0 | 802 |
MS.gene48050.t1 | AT3G59920 | 85.360 | 444 | 65 | 0 | 1 | 444 | 1 | 444 | 0.0 | 798 |
MS.gene48050.t1 | AT2G44100 | 85.814 | 430 | 61 | 0 | 1 | 430 | 1 | 430 | 0.0 | 781 |
MS.gene48050.t1 | AT5G09550 | 79.505 | 444 | 91 | 0 | 1 | 444 | 1 | 444 | 0.0 | 754 |
MS.gene48050.t1 | AT3G06540 | 24.661 | 442 | 250 | 15 | 5 | 366 | 15 | 453 | 1.89e-20 | 94.4 |
Find 109 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGACCCATGACAGAAAATT+TGG | 0.184972 | 4.3:-11879751 | MS.gene48050:intron |
CACTTCCCTTAATCTTATTC+AGG | 0.214984 | 4.3:-11881155 | MS.gene48050:intron |
GATGATCAAGGAAAGGTTAT+TGG | 0.226106 | 4.3:-11878065 | MS.gene48050:CDS |
GGCTTTGAAGTCCCCACTTA+TGG | 0.233527 | 4.3:-11880366 | MS.gene48050:CDS |
TTTGGGTGTTTAGTTCATTA+TGG | 0.255862 | 4.3:-11880632 | MS.gene48050:intron |
GCACGGCTTAGCGCTGTTTA+TGG | 0.259796 | 4.3:-11879284 | MS.gene48050:CDS |
TTCAGCTCTGGAAGAAATTC+AGG | 0.276301 | 4.3:-11881044 | MS.gene48050:intron |
TGACAAGCCTCCTCCTCATT+TGG | 0.302661 | 4.3:-11881016 | MS.gene48050:CDS |
AGTATATCTACCTTGCATTC+AGG | 0.307677 | 4.3:+11879239 | None:intergenic |
AACATGTATACGTTGATAAC+TGG | 0.312028 | 4.3:-11875072 | MS.gene48050:CDS |
CCAGGTTTCAGTTCAATTGC+AGG | 0.316392 | 4.3:+11875320 | None:intergenic |
AGAATACGATGTAATCGTTC+TGG | 0.319703 | 4.3:-11881365 | MS.gene48050:CDS |
ATATATCCTTTGTATGGTTT+AGG | 0.331062 | 4.3:-11879444 | MS.gene48050:CDS |
AAACCTGGAATTGACCTTCT+AGG | 0.335092 | 4.3:-11875305 | MS.gene48050:CDS |
GACAAGCCTCCTCCTCATTT+GGG | 0.351742 | 4.3:-11881015 | MS.gene48050:CDS |
GGACTTCATTGGTCATGCTT+TGG | 0.364793 | 4.3:-11879710 | MS.gene48050:CDS |
GATTGGGAGTCATTGGTGTT+GGG | 0.368885 | 4.3:+11877659 | None:intergenic |
TCTAGGGTGGGTTCATTGAC+TGG | 0.390022 | 4.3:+11875239 | None:intergenic |
TATTCTCCCACAAAAGCAAC+TGG | 0.403427 | 4.3:-11877627 | MS.gene48050:CDS |
GCTTTGAAGTCCCCACTTAT+GGG | 0.406357 | 4.3:-11880365 | MS.gene48050:CDS |
GAGTCTCTTGCACGATTTCA+AGG | 0.410458 | 4.3:-11879480 | MS.gene48050:CDS |
CCTTACATATATCCTTTGTA+TGG | 0.411629 | 4.3:-11879450 | MS.gene48050:CDS |
TCTTTACTCTTCTGCAGCAC+TGG | 0.413041 | 4.3:+11874446 | None:intergenic |
TGACTTACATGTCTGACTTT+CGG | 0.427909 | 4.3:+11877603 | None:intergenic |
CGATTGGGAGTCATTGGTGT+TGG | 0.428832 | 4.3:+11877658 | None:intergenic |
ACCTTGTTGGTCAAGTATGA+TGG | 0.428877 | 4.3:+11877993 | None:intergenic |
GGTCCTAGAAGGTCAATTCC+AGG | 0.437493 | 4.3:+11875302 | None:intergenic |
CTGAATAAGATTAAGGGAAG+TGG | 0.439368 | 4.3:+11881156 | None:intergenic |
AAAGCCTCCATGTCATTTGA+AGG | 0.440668 | 4.3:+11880383 | None:intergenic |
TCTCACAATGTTTGCCCAAA+GGG | 0.442192 | 4.3:-11875386 | MS.gene48050:CDS |
TTGCACCGATTGGGAGTCAT+TGG | 0.442455 | 4.3:+11877652 | None:intergenic |
TCGAAATAAAGCAGTTGTCT+AGG | 0.450436 | 4.3:+11875222 | None:intergenic |
CCTGCAATTGAACTGAAACC+TGG | 0.453263 | 4.3:-11875320 | MS.gene48050:CDS |
GAGTCATTGGTGTTGGGGAT+CGG | 0.454805 | 4.3:+11877665 | None:intergenic |
CTCTTCACAGTGTCTAGTGC+TGG | 0.455178 | 4.3:+11879655 | None:intergenic |
GATAACACTGTGGACTTCAT+TGG | 0.464458 | 4.3:-11879721 | MS.gene48050:CDS |
GAGAATAACTTGCACCGATT+GGG | 0.465079 | 4.3:+11877643 | None:intergenic |
GATGTAATCGTTCTGGGAAC+TGG | 0.470059 | 4.3:-11881358 | MS.gene48050:CDS |
ATGGATAGAAATGATTATTA+CGG | 0.478912 | 4.3:-11881187 | MS.gene48050:CDS |
TCTCATCAACAGGTCCTAGA+AGG | 0.482856 | 4.3:+11875291 | None:intergenic |
TTTCAAATATTCCCATAAGT+GGG | 0.483406 | 4.3:+11880354 | None:intergenic |
GGAGAATAACTTGCACCGAT+TGG | 0.484322 | 4.3:+11877642 | None:intergenic |
GAATACGATGTAATCGTTCT+GGG | 0.496229 | 4.3:-11881364 | MS.gene48050:CDS |
CGAAATAAAGCAGTTGTCTA+GGG | 0.502383 | 4.3:+11875223 | None:intergenic |
CTCTATTTCAAAGCTGTGGA+TGG | 0.502434 | 4.3:-11880559 | MS.gene48050:CDS |
TCACTTTGAATCAACAGTAC+TGG | 0.502679 | 4.3:-11875103 | MS.gene48050:CDS |
GTTATTGGCGTCACGTCTGA+AGG | 0.507245 | 4.3:-11878050 | MS.gene48050:CDS |
GTTTAGTTCATTATGGCCAA+TGG | 0.508001 | 4.3:-11880625 | MS.gene48050:intron |
CAGGTGGAATTTGATGATCA+AGG | 0.509665 | 4.3:-11878077 | MS.gene48050:CDS |
CCATACAAAGGATATATGTA+AGG | 0.512388 | 4.3:+11879450 | None:intergenic |
AGTGGTCTTCTCTCCGTCGA+TGG | 0.517094 | 4.3:-11881316 | MS.gene48050:CDS |
AACCCTCACTAATGTGCCAT+TGG | 0.520084 | 4.3:+11880609 | None:intergenic |
ACCATTTCAACAGGTGAGGA+AGG | 0.530785 | 4.3:-11877726 | MS.gene48050:intron |
TTTCAACAGGTGAGGAAGGT+TGG | 0.530894 | 4.3:-11877722 | MS.gene48050:intron |
GCTGATCCTAAAACTCATGA+TGG | 0.539416 | 4.3:-11880284 | MS.gene48050:CDS |
CTAGAACCCAAATGAGGAGG+AGG | 0.539538 | 4.3:+11881009 | None:intergenic |
TCCTAAAACTCATGATGGGA+TGG | 0.544577 | 4.3:-11880279 | MS.gene48050:CDS |
ACAGGTGAGGAAGGTTGGTA+AGG | 0.545562 | 4.3:-11877717 | MS.gene48050:intron |
TTCTCACAATGTTTGCCCAA+AGG | 0.554054 | 4.3:-11875387 | MS.gene48050:CDS |
TGGTTTAGGAGAGCTTCCTC+AGG | 0.555597 | 4.3:-11879430 | MS.gene48050:intron |
GTTGAATAAACCTGAATGCA+AGG | 0.558302 | 4.3:-11879249 | MS.gene48050:intron |
ATTGGGAGTCATTGGTGTTG+GGG | 0.558324 | 4.3:+11877660 | None:intergenic |
GAGAATACGAGCAACAGAAT+AGG | 0.558919 | 4.3:+11875405 | None:intergenic |
TATTGGTACAGGCATTTGCA+CGG | 0.559199 | 4.3:-11879301 | MS.gene48050:intron |
CATTGGTGTTGGGGATCGGA+TGG | 0.560062 | 4.3:+11877669 | None:intergenic |
CAAGGTACCTTCAAATGACA+TGG | 0.560179 | 4.3:-11880390 | MS.gene48050:CDS |
GGAAGGTTGGTAAGGTTGCA+AGG | 0.561162 | 4.3:-11877709 | MS.gene48050:CDS |
AGTCTCTTGCACGATTTCAA+GGG | 0.561340 | 4.3:-11879479 | MS.gene48050:CDS |
CGGCTTAGCGCTGTTTATGG+AGG | 0.561599 | 4.3:-11879281 | MS.gene48050:CDS |
GGAATTTGATGATCAAGGAA+AGG | 0.566365 | 4.3:-11878072 | MS.gene48050:CDS |
TTCAAATATTCCCATAAGTG+GGG | 0.568438 | 4.3:+11880355 | None:intergenic |
TTATGTTCAAGATTATAATG+AGG | 0.568766 | 4.3:-11880306 | MS.gene48050:CDS |
CTTGACAAGAGTCACTACTA+AGG | 0.569477 | 4.3:-11880255 | MS.gene48050:CDS |
CTTTGTCTTTAACAAAGCAA+AGG | 0.569984 | 4.3:-11880533 | MS.gene48050:intron |
TGGCCAATGGCACATTAGTG+AGG | 0.571838 | 4.3:-11880612 | MS.gene48050:CDS |
AATAAAGCAGTTGTCTAGGG+TGG | 0.573026 | 4.3:+11875226 | None:intergenic |
TCAGCTCTGGAAGAAATTCA+GGG | 0.573618 | 4.3:-11881043 | MS.gene48050:intron |
GTATCTCTATTTCAAAGCTG+TGG | 0.574401 | 4.3:-11880563 | MS.gene48050:CDS |
GTCTCTTGCACGATTTCAAG+GGG | 0.577654 | 4.3:-11879478 | MS.gene48050:CDS |
CAACACCAATGACTCCCAAT+CGG | 0.583889 | 4.3:-11877657 | MS.gene48050:CDS |
AGTCCACAGTGTTATCATCA+AGG | 0.587304 | 4.3:+11879728 | None:intergenic |
GGCCAATGGCACATTAGTGA+GGG | 0.588085 | 4.3:-11880611 | MS.gene48050:CDS |
GGTTACTTTGAGGCCATCGA+CGG | 0.588114 | 4.3:+11881303 | None:intergenic |
CTGATCCTAAAACTCATGAT+GGG | 0.593086 | 4.3:-11880283 | MS.gene48050:CDS |
TAATATTGATATGAACCCTA+AGG | 0.595316 | 4.3:-11880977 | MS.gene48050:intron |
TACTGTTGATTCAAAGTGAG+TGG | 0.602582 | 4.3:+11875107 | None:intergenic |
GAAGGTTGGTAAGGTTGCAA+GGG | 0.604709 | 4.3:-11877708 | MS.gene48050:CDS |
ATAAAGCAGTTGTCTAGGGT+GGG | 0.607677 | 4.3:+11875227 | None:intergenic |
TTATTGGCGTCACGTCTGAA+GGG | 0.608673 | 4.3:-11878049 | MS.gene48050:CDS |
GGGGATCGGATGGCTCATGA+TGG | 0.613814 | 4.3:+11877679 | None:intergenic |
GTATACGTTGATAACTGGAA+AGG | 0.621367 | 4.3:-11875067 | MS.gene48050:intron |
GATAGAAATGATTATTACGG+AGG | 0.624916 | 4.3:-11881184 | MS.gene48050:CDS |
TTATCAACGTATACATGTTG+AGG | 0.629009 | 4.3:+11875076 | None:intergenic |
TATTGGCGTCACGTCTGAAG+GGG | 0.631609 | 4.3:-11878048 | MS.gene48050:CDS |
TTACTCTTCTGCAGCACTGG+CGG | 0.636142 | 4.3:+11874449 | None:intergenic |
AGACACTGTGAAGAGAATGA+AGG | 0.644888 | 4.3:-11879647 | MS.gene48050:intron |
TCTTTGCTAGAACCCAAATG+AGG | 0.649689 | 4.3:+11881003 | None:intergenic |
TATTGCATTTGTATCAACTG+AGG | 0.650673 | 4.3:-11875357 | MS.gene48050:CDS |
AGCTCTCCTAAACCATACAA+AGG | 0.658728 | 4.3:+11879438 | None:intergenic |
TTGCTAGAACCCAAATGAGG+AGG | 0.659828 | 4.3:+11881006 | None:intergenic |
ATTCTCCCACAAAAGCAACT+GGG | 0.662559 | 4.3:-11877626 | MS.gene48050:CDS |
TCCATCATACTTGACCAACA+AGG | 0.680703 | 4.3:-11877994 | MS.gene48050:intron |
CTCAAAGAATGCATTCTCAG+TGG | 0.682881 | 4.3:-11881334 | MS.gene48050:CDS |
CAGCTCTGGAAGAAATTCAG+GGG | 0.685860 | 4.3:-11881042 | MS.gene48050:CDS |
GGTACCTTCAAATGACATGG+AGG | 0.738325 | 4.3:-11880387 | MS.gene48050:CDS |
CGGCACTGAGATCCACAGTG+AGG | 0.743753 | 4.3:+11874469 | None:intergenic |
TCTCTTGCACGATTTCAAGG+GGG | 0.764721 | 4.3:-11879477 | MS.gene48050:CDS |
TGGCCTTGATGATAACACTG+TGG | 0.769317 | 4.3:-11879731 | MS.gene48050:CDS |
ACAGGTTCTAGACCTCACTG+TGG | 0.826301 | 4.3:-11874481 | MS.gene48050:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.3 | gene | 11874449 | 11881395 | 11874449 | ID=MS.gene48050 |
chr4.3 | mRNA | 11874449 | 11881395 | 11874449 | ID=MS.gene48050.t1;Parent=MS.gene48050 |
chr4.3 | exon | 11881309 | 11881395 | 11881309 | ID=MS.gene48050.t1.exon1;Parent=MS.gene48050.t1 |
chr4.3 | CDS | 11881309 | 11881395 | 11881309 | ID=cds.MS.gene48050.t1;Parent=MS.gene48050.t1 |
chr4.3 | exon | 11881156 | 11881218 | 11881156 | ID=MS.gene48050.t1.exon2;Parent=MS.gene48050.t1 |
chr4.3 | CDS | 11881156 | 11881218 | 11881156 | ID=cds.MS.gene48050.t1;Parent=MS.gene48050.t1 |
chr4.3 | exon | 11880978 | 11881061 | 11880978 | ID=MS.gene48050.t1.exon3;Parent=MS.gene48050.t1 |
chr4.3 | CDS | 11880978 | 11881061 | 11880978 | ID=cds.MS.gene48050.t1;Parent=MS.gene48050.t1 |
chr4.3 | exon | 11880534 | 11880641 | 11880534 | ID=MS.gene48050.t1.exon4;Parent=MS.gene48050.t1 |
chr4.3 | CDS | 11880534 | 11880641 | 11880534 | ID=cds.MS.gene48050.t1;Parent=MS.gene48050.t1 |
chr4.3 | exon | 11880245 | 11880417 | 11880245 | ID=MS.gene48050.t1.exon5;Parent=MS.gene48050.t1 |
chr4.3 | CDS | 11880245 | 11880417 | 11880245 | ID=cds.MS.gene48050.t1;Parent=MS.gene48050.t1 |
chr4.3 | exon | 11879648 | 11879759 | 11879648 | ID=MS.gene48050.t1.exon6;Parent=MS.gene48050.t1 |
chr4.3 | CDS | 11879648 | 11879759 | 11879648 | ID=cds.MS.gene48050.t1;Parent=MS.gene48050.t1 |
chr4.3 | exon | 11879431 | 11879511 | 11879431 | ID=MS.gene48050.t1.exon7;Parent=MS.gene48050.t1 |
chr4.3 | CDS | 11879431 | 11879511 | 11879431 | ID=cds.MS.gene48050.t1;Parent=MS.gene48050.t1 |
chr4.3 | exon | 11879250 | 11879312 | 11879250 | ID=MS.gene48050.t1.exon8;Parent=MS.gene48050.t1 |
chr4.3 | CDS | 11879250 | 11879312 | 11879250 | ID=cds.MS.gene48050.t1;Parent=MS.gene48050.t1 |
chr4.3 | exon | 11877995 | 11878096 | 11877995 | ID=MS.gene48050.t1.exon9;Parent=MS.gene48050.t1 |
chr4.3 | CDS | 11877995 | 11878096 | 11877995 | ID=cds.MS.gene48050.t1;Parent=MS.gene48050.t1 |
chr4.3 | exon | 11877611 | 11877735 | 11877611 | ID=MS.gene48050.t1.exon10;Parent=MS.gene48050.t1 |
chr4.3 | CDS | 11877611 | 11877735 | 11877611 | ID=cds.MS.gene48050.t1;Parent=MS.gene48050.t1 |
chr4.3 | exon | 11875220 | 11875430 | 11875220 | ID=MS.gene48050.t1.exon11;Parent=MS.gene48050.t1 |
chr4.3 | CDS | 11875220 | 11875430 | 11875220 | ID=cds.MS.gene48050.t1;Parent=MS.gene48050.t1 |
chr4.3 | exon | 11875068 | 11875142 | 11875068 | ID=MS.gene48050.t1.exon12;Parent=MS.gene48050.t1 |
chr4.3 | CDS | 11875068 | 11875142 | 11875068 | ID=cds.MS.gene48050.t1;Parent=MS.gene48050.t1 |
chr4.3 | exon | 11874449 | 11874499 | 11874449 | ID=MS.gene48050.t1.exon13;Parent=MS.gene48050.t1 |
chr4.3 | CDS | 11874449 | 11874499 | 11874449 | ID=cds.MS.gene48050.t1;Parent=MS.gene48050.t1 |
Gene Sequence |
Protein sequence |