Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48492.t1 | XP_003603025.1 | 97.2 | 216 | 6 | 0 | 1 | 216 | 16 | 231 | 1.90E-114 | 421.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48492.t1 | Q1G3M3 | 52.0 | 221 | 92 | 4 | 1 | 216 | 16 | 227 | 1.2e-51 | 204.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48492.t1 | G7J6B9 | 97.2 | 216 | 6 | 0 | 1 | 216 | 16 | 231 | 1.4e-114 | 421.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene48492.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049251 | MS.gene48492 | 0.851125 | 1.09E-60 | -1.69E-46 |
| MS.gene050874 | MS.gene48492 | 0.825252 | 5.19E-54 | -1.69E-46 |
| MS.gene050875 | MS.gene48492 | 0.858745 | 6.67E-63 | -1.69E-46 |
| MS.gene05124 | MS.gene48492 | 0.822374 | 2.45E-53 | -1.69E-46 |
| MS.gene051914 | MS.gene48492 | 0.893008 | 9.37E-75 | -1.69E-46 |
| MS.gene052143 | MS.gene48492 | 0.808331 | 3.26E-50 | -1.69E-46 |
| MS.gene052308 | MS.gene48492 | 0.871254 | 7.86E-67 | -1.69E-46 |
| MS.gene052367 | MS.gene48492 | 0.835931 | 1.26E-56 | -1.69E-46 |
| MS.gene053173 | MS.gene48492 | 0.892123 | 2.12E-74 | -1.69E-46 |
| MS.gene053348 | MS.gene48492 | 0.841077 | 5.91E-58 | -1.69E-46 |
| MS.gene053416 | MS.gene48492 | 0.836647 | 8.28E-57 | -1.69E-46 |
| MS.gene053417 | MS.gene48492 | 0.833572 | 4.94E-56 | -1.69E-46 |
| MS.gene054018 | MS.gene48492 | 0.805356 | 1.39E-49 | -1.69E-46 |
| MS.gene054459 | MS.gene48492 | 0.814 | 1.93E-51 | -1.69E-46 |
| MS.gene054551 | MS.gene48492 | 0.8824 | 1.07E-70 | -1.69E-46 |
| MS.gene054552 | MS.gene48492 | 0.802656 | 5.06E-49 | -1.69E-46 |
| MS.gene054593 | MS.gene48492 | 0.870585 | 1.31E-66 | -1.69E-46 |
| MS.gene054633 | MS.gene48492 | 0.976385 | 1.01E-141 | -1.69E-46 |
| MS.gene054662 | MS.gene48492 | 0.860813 | 1.59E-63 | -1.69E-46 |
| MS.gene055308 | MS.gene48492 | 0.861112 | 1.29E-63 | -1.69E-46 |
| MS.gene055578 | MS.gene48492 | 0.860803 | 1.60E-63 | -1.69E-46 |
| MS.gene055957 | MS.gene48492 | 0.802295 | 6.01E-49 | -1.69E-46 |
| MS.gene056041 | MS.gene48492 | 0.847323 | 1.24E-59 | -1.69E-46 |
| MS.gene05640 | MS.gene48492 | 0.892602 | 1.36E-74 | -1.69E-46 |
| MS.gene056526 | MS.gene48492 | 0.816878 | 4.41E-52 | -1.69E-46 |
| MS.gene056528 | MS.gene48492 | 0.828303 | 9.69E-55 | -1.69E-46 |
| MS.gene05652 | MS.gene48492 | 0.86133 | 1.11E-63 | -1.69E-46 |
| MS.gene05732 | MS.gene48492 | 0.809821 | 1.57E-50 | -1.69E-46 |
| MS.gene057367 | MS.gene48492 | 0.846141 | 2.62E-59 | -1.69E-46 |
| MS.gene057458 | MS.gene48492 | 0.8498 | 2.56E-60 | -1.69E-46 |
| MS.gene057669 | MS.gene48492 | 0.816554 | 5.21E-52 | -1.69E-46 |
| MS.gene058013 | MS.gene48492 | 0.81507 | 1.12E-51 | -1.69E-46 |
| MS.gene058128 | MS.gene48492 | 0.864822 | 9.22E-65 | -1.69E-46 |
| MS.gene058789 | MS.gene48492 | 0.801646 | 8.16E-49 | -1.69E-46 |
| MS.gene058853 | MS.gene48492 | 0.877528 | 5.85E-69 | -1.69E-46 |
| MS.gene05926 | MS.gene48492 | 0.825121 | 5.57E-54 | -1.69E-46 |
| MS.gene059553 | MS.gene48492 | 0.835863 | 1.31E-56 | -1.69E-46 |
| MS.gene059616 | MS.gene48492 | 0.840312 | 9.38E-58 | -1.69E-46 |
| MS.gene060473 | MS.gene48492 | 0.821707 | 3.50E-53 | -1.69E-46 |
| MS.gene060565 | MS.gene48492 | 0.809397 | 1.93E-50 | -1.69E-46 |
| MS.gene06093 | MS.gene48492 | 0.891712 | 3.09E-74 | -1.69E-46 |
| MS.gene061099 | MS.gene48492 | 0.845187 | 4.75E-59 | -1.69E-46 |
| MS.gene061260 | MS.gene48492 | 0.836349 | 9.86E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48492.t1 | MTR_3g101520 | 99.537 | 216 | 1 | 0 | 1 | 216 | 16 | 231 | 6.78e-163 | 449 |
| MS.gene48492.t1 | MTR_3g101520 | 95.833 | 216 | 1 | 1 | 1 | 216 | 16 | 223 | 1.92e-152 | 422 |
| MS.gene48492.t1 | MTR_2g102450 | 43.519 | 216 | 114 | 5 | 3 | 212 | 22 | 235 | 2.34e-44 | 153 |
| MS.gene48492.t1 | MTR_2g102450 | 54.167 | 120 | 55 | 0 | 93 | 212 | 62 | 181 | 3.11e-39 | 138 |
| MS.gene48492.t1 | MTR_4g008310 | 47.934 | 121 | 63 | 0 | 93 | 213 | 191 | 311 | 3.79e-33 | 121 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48492.t1 | AT5G42700 | 55.450 | 211 | 87 | 2 | 1 | 210 | 17 | 221 | 2.08e-72 | 219 |
| MS.gene48492.t1 | AT3G19184 | 56.621 | 219 | 85 | 4 | 1 | 216 | 16 | 227 | 1.41e-71 | 219 |
| MS.gene48492.t1 | AT3G19184 | 56.621 | 219 | 85 | 4 | 1 | 216 | 16 | 227 | 1.60e-71 | 219 |
| MS.gene48492.t1 | AT5G42700 | 55.056 | 178 | 74 | 1 | 33 | 210 | 5 | 176 | 4.51e-62 | 192 |
| MS.gene48492.t1 | AT5G58280 | 37.019 | 208 | 121 | 4 | 11 | 212 | 49 | 252 | 3.61e-35 | 126 |
| MS.gene48492.t1 | AT5G58280 | 36.842 | 209 | 121 | 5 | 11 | 212 | 49 | 253 | 2.04e-33 | 122 |
| MS.gene48492.t1 | AT5G58280 | 35.945 | 217 | 123 | 5 | 1 | 211 | 13 | 219 | 8.20e-33 | 119 |
Find 53 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACCTTGAAATTCTATTTCT+AGG | 0.204642 | 3.1:-80594134 | None:intergenic |
| CTCATGTCACTGGTGGATTC+TGG | 0.287144 | 3.1:+80594387 | MS.gene48492:CDS |
| TGAGTCTCCAACTACATATT+TGG | 0.308296 | 3.1:+80596722 | MS.gene48492:CDS |
| ACAACGAGCTCTTTCTTGAT+AGG | 0.331075 | 3.1:-80593948 | None:intergenic |
| GTCATCACTTCGTCCCGTTT+TGG | 0.333776 | 3.1:-80596678 | None:intergenic |
| TTACAGACTTCTTTGTAAAC+AGG | 0.370188 | 3.1:-80594008 | None:intergenic |
| CTTGATAGGGGTGCGAGGTT+TGG | 0.379420 | 3.1:-80593934 | None:intergenic |
| TAGAGTGAATGAGGGTAAAC+AGG | 0.402295 | 3.1:+80597317 | MS.gene48492:CDS |
| CTCGTTGTTGTTCGAAGATC+CGG | 0.408143 | 3.1:+80593963 | MS.gene48492:CDS |
| TACCTAGAAATAGAATTTCA+AGG | 0.423170 | 3.1:+80594132 | MS.gene48492:CDS |
| ACATATTTGGCTCACAAAAC+AGG | 0.425458 | 3.1:+80596735 | MS.gene48492:CDS |
| AGTTAAACGCACTGCATTCA+AGG | 0.432696 | 3.1:+80596830 | MS.gene48492:CDS |
| GGAAGAGAATCAAAAGAGAA+TGG | 0.440339 | 3.1:+80593839 | MS.gene48492:CDS |
| ATTGCTCATAACCTTGTTGA+TGG | 0.442206 | 3.1:+80596786 | MS.gene48492:CDS |
| AGCATTGACTTGACAAAAGT+TGG | 0.443741 | 3.1:-80594359 | None:intergenic |
| TGCGTCCGACGAAGCTAGAA+TGG | 0.446516 | 3.1:+80594286 | MS.gene48492:CDS |
| CAACGAGCTCTTTCTTGATA+GGG | 0.456259 | 3.1:-80593947 | None:intergenic |
| ATCCACCAGTGACATGAGAT+TGG | 0.459124 | 3.1:-80594382 | None:intergenic |
| GCCTTCCAAATCATTTCTGC+AGG | 0.472041 | 3.1:+80596646 | MS.gene48492:CDS |
| ATGACTTTAATTGATGAGGA+TGG | 0.480177 | 3.1:+80596696 | MS.gene48492:CDS |
| GTGAAGTGATTGAGAGAGCT+TGG | 0.490518 | 3.1:-80593877 | None:intergenic |
| GTGGTGGATATGATAAGTAC+AGG | 0.491955 | 3.1:+80594243 | MS.gene48492:CDS |
| TGCTTCCATTCTAGCTTCGT+CGG | 0.496827 | 3.1:-80594291 | None:intergenic |
| GTACATTATTAGAGTGAATG+AGG | 0.501375 | 3.1:+80597308 | MS.gene48492:CDS |
| GTAAACAGGAGCAGGCATAT+TGG | 0.504680 | 3.1:-80593994 | None:intergenic |
| TGGATGATCAGAATCTAAAT+CGG | 0.505469 | 3.1:-80594339 | None:intergenic |
| GGTGCGAGGTTTGGAAGGTG+AGG | 0.511953 | 3.1:-80593925 | None:intergenic |
| CACAAAACAGGACTTAGTGC+TGG | 0.519162 | 3.1:+80596747 | MS.gene48492:CDS |
| ATGCTCCAATCTCATGTCAC+TGG | 0.520101 | 3.1:+80594377 | MS.gene48492:CDS |
| ACTTCTTTGTAAACAGGAGC+AGG | 0.521856 | 3.1:-80594002 | None:intergenic |
| CTCCAATCTCATGTCACTGG+TGG | 0.526085 | 3.1:+80594380 | MS.gene48492:CDS |
| CGAAGCTAGAATGGAAGCAA+TGG | 0.532880 | 3.1:+80594295 | MS.gene48492:CDS |
| TTGTGAGCCAAATATGTAGT+TGG | 0.534295 | 3.1:-80596729 | None:intergenic |
| TTGCTCATAACCTTGTTGAT+GGG | 0.536210 | 3.1:+80596787 | MS.gene48492:CDS |
| GACTTTAATTGATGAGGATG+GGG | 0.536969 | 3.1:+80596698 | MS.gene48492:CDS |
| AGGCATATTGGCGACACGAC+CGG | 0.537317 | 3.1:-80593982 | None:intergenic |
| TCCTGCAGAAATGATTTGGA+AGG | 0.537387 | 3.1:-80596647 | None:intergenic |
| GTGCGAGGTTTGGAAGGTGA+GGG | 0.543398 | 3.1:-80593924 | None:intergenic |
| TGACTTTAATTGATGAGGAT+GGG | 0.546142 | 3.1:+80596697 | MS.gene48492:CDS |
| TGTCACTGGTGGATTCTGGC+TGG | 0.546764 | 3.1:+80594391 | MS.gene48492:CDS |
| TGCTCATAACCTTGTTGATG+GGG | 0.557712 | 3.1:+80596788 | MS.gene48492:CDS |
| ATAGGGGTGCGAGGTTTGGA+AGG | 0.572029 | 3.1:-80593930 | None:intergenic |
| AACGAGCTCTTTCTTGATAG+GGG | 0.578112 | 3.1:-80593946 | None:intergenic |
| GGACTTAGTGCTGGATGGAG+AGG | 0.579069 | 3.1:+80596756 | MS.gene48492:CDS |
| GTACAGGGATTATTCGAAGC+GGG | 0.591336 | 3.1:+80594259 | MS.gene48492:CDS |
| TACATTATTAGAGTGAATGA+GGG | 0.593532 | 3.1:+80597309 | MS.gene48492:CDS |
| AAACAGGACTTAGTGCTGGA+TGG | 0.601864 | 3.1:+80596751 | MS.gene48492:CDS |
| AGTGATGACTTTAATTGATG+AGG | 0.610611 | 3.1:+80596692 | MS.gene48492:CDS |
| TAGAATGGAAGCAATGGAGA+AGG | 0.631866 | 3.1:+80594301 | MS.gene48492:CDS |
| TGGTGGATATGATAAGTACA+GGG | 0.664434 | 3.1:+80594244 | MS.gene48492:CDS |
| TCTTTCTTGATAGGGGTGCG+AGG | 0.664811 | 3.1:-80593939 | None:intergenic |
| TTAAAGCATCCCCATCAACA+AGG | 0.671282 | 3.1:-80596797 | None:intergenic |
| AGTACAGGGATTATTCGAAG+CGG | 0.715139 | 3.1:+80594258 | MS.gene48492:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGTATCTTATTTTTATTAA+AGG | - | chr3.1:80594933-80594952 | None:intergenic | 10.0% |
| !!! | AGTATCTTATTTTTATTAAA+GGG | - | chr3.1:80594932-80594951 | None:intergenic | 10.0% |
| !!! | TAATTTAATTTATTTGTACA+AGG | - | chr3.1:80596511-80596530 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTTTTTTGTGT+TGG | + | chr3.1:80595496-80595515 | MS.gene48492:intron | 10.0% |
| !! | AACATAACATATATAATAGT+TGG | - | chr3.1:80596403-80596422 | None:intergenic | 15.0% |
| !! | ACATAACATATATAATAGTT+GGG | - | chr3.1:80596402-80596421 | None:intergenic | 15.0% |
| !! | ATACAACTACAATTTATAAT+TGG | + | chr3.1:80596593-80596612 | MS.gene48492:intron | 15.0% |
| !! | TATAAAGATGTTAAAAAAAG+AGG | + | chr3.1:80594537-80594556 | MS.gene48492:intron | 15.0% |
| !! | TATTATATATGTTATGTTGA+GGG | + | chr3.1:80596405-80596424 | MS.gene48492:intron | 15.0% |
| !! | TGATAACATGTATTATAAAT+AGG | - | chr3.1:80597039-80597058 | None:intergenic | 15.0% |
| !! | TTGACAAATTTAAATCTATA+TGG | + | chr3.1:80596365-80596384 | MS.gene48492:intron | 15.0% |
| !! | TTTCATAATATAAAATGAAG+TGG | + | chr3.1:80595186-80595205 | MS.gene48492:intron | 15.0% |
| !!! | GTATCTTATTTTTATTAAAG+GGG | - | chr3.1:80594931-80594950 | None:intergenic | 15.0% |
| !!! | TATTCATTGATTAATATATG+TGG | - | chr3.1:80597260-80597279 | None:intergenic | 15.0% |
| !! | AAAAAACATACATTAGACAA+TGG | - | chr3.1:80595239-80595258 | None:intergenic | 20.0% |
| !! | AATACTACTGATATTTATCT+AGG | + | chr3.1:80597192-80597211 | MS.gene48492:intron | 20.0% |
| !! | ATATTAATCAATGAATAGTG+TGG | + | chr3.1:80597263-80597282 | MS.gene48492:intron | 20.0% |
| !! | CCACATTGAAATAAATATAA+TGG | - | chr3.1:80597100-80597119 | None:intergenic | 20.0% |
| !! | CCATTATATTTATTTCAATG+TGG | + | chr3.1:80597097-80597116 | MS.gene48492:intron | 20.0% |
| !! | CTATTATATATGTTATGTTG+AGG | + | chr3.1:80596404-80596423 | MS.gene48492:intron | 20.0% |
| !! | TATATTTATTTCAATGTGGA+GGG | + | chr3.1:80597101-80597120 | MS.gene48492:intron | 20.0% |
| !! | TTATATTTATTTCAATGTGG+AGG | + | chr3.1:80597100-80597119 | MS.gene48492:intron | 20.0% |
| !!! | ATAAATAGGAGTATTGAAAA+AGG | - | chr3.1:80597025-80597044 | None:intergenic | 20.0% |
| !!! | ATTAACATTCTCTCTTTTAA+TGG | - | chr3.1:80594968-80594987 | None:intergenic | 20.0% |
| !!! | GAAAATGTAATGAATTTTTC+TGG | - | chr3.1:80595025-80595044 | None:intergenic | 20.0% |
| !!! | TAAATAGGAGTATTGAAAAA+GGG | - | chr3.1:80597024-80597043 | None:intergenic | 20.0% |
| !!! | TCTATTTCTAGGTATTTTAA+CGG | - | chr3.1:80594126-80594145 | None:intergenic | 20.0% |
| !!! | TTATAATTGGTTAGTCATTT+TGG | + | chr3.1:80596606-80596625 | MS.gene48492:intron | 20.0% |
| ! | AAGAGATACAAAATTTGAGT+TGG | - | chr3.1:80596138-80596157 | None:intergenic | 25.0% |
| ! | AATCATATACAGCGAAAATA+TGG | + | chr3.1:80595322-80595341 | MS.gene48492:intron | 25.0% |
| ! | AGATGAATGTTATATGTATG+TGG | + | chr3.1:80596977-80596996 | MS.gene48492:intron | 25.0% |
| ! | AGTAAATAATCTAATGTAGG+TGG | - | chr3.1:80595444-80595463 | None:intergenic | 25.0% |
| ! | AGTAATAGAGAAAGATGAAA+TGG | - | chr3.1:80594056-80594075 | None:intergenic | 25.0% |
| ! | ATAATGAGATTGCTAACTAT+AGG | - | chr3.1:80597236-80597255 | None:intergenic | 25.0% |
| ! | CGAATAAAATTATGTCATTC+TGG | + | chr3.1:80596445-80596464 | MS.gene48492:intron | 25.0% |
| ! | CTTTATAAACGAAAACACAT+AGG | - | chr3.1:80596268-80596287 | None:intergenic | 25.0% |
| ! | GAGAGTAAATAATCTAATGT+AGG | - | chr3.1:80595447-80595466 | None:intergenic | 25.0% |
| ! | GTAAATAATCTAATGTAGGT+GGG | - | chr3.1:80595443-80595462 | None:intergenic | 25.0% |
| ! | GTATATAGCACGATTAAATA+TGG | - | chr3.1:80596908-80596927 | None:intergenic | 25.0% |
| ! | TACATTATTAGAGTGAATGA+GGG | + | chr3.1:80597309-80597328 | MS.gene48492:CDS | 25.0% |
| ! | TACCTAGAAATAGAATTTCA+AGG | + | chr3.1:80594132-80594151 | MS.gene48492:CDS | 25.0% |
| ! | TATATGTATGTGGCTAATAA+TGG | + | chr3.1:80596987-80597006 | MS.gene48492:intron | 25.0% |
| ! | TGAAGAAAGAAAATTGACAT+TGG | - | chr3.1:80595111-80595130 | None:intergenic | 25.0% |
| ! | TGTCTATTGTATGTTAGTAT+GGG | + | chr3.1:80595271-80595290 | MS.gene48492:intron | 25.0% |
| ! | TTGTCTATTGTATGTTAGTA+TGG | + | chr3.1:80595270-80595289 | MS.gene48492:intron | 25.0% |
| !! | AACCTTGAAATTCTATTTCT+AGG | - | chr3.1:80594137-80594156 | None:intergenic | 25.0% |
| !! | AATGTAATGAATTTTTCTGG+TGG | - | chr3.1:80595022-80595041 | None:intergenic | 25.0% |
| !! | CATTTTGTATGTATAAATGC+TGG | + | chr3.1:80594592-80594611 | MS.gene48492:intron | 25.0% |
| !!! | ATAAATGCTGGTTTTGTTAT+TGG | + | chr3.1:80594604-80594623 | MS.gene48492:intron | 25.0% |
| !!! | ATATTTTTTCTGTGTAGATG+TGG | + | chr3.1:80594224-80594243 | MS.gene48492:intron | 25.0% |
| !!! | ATTTGTTTTGGCTTTAAATG+AGG | - | chr3.1:80595589-80595608 | None:intergenic | 25.0% |
| !!! | GTTCACTTTTTTTATTACTG+TGG | + | chr3.1:80594483-80594502 | MS.gene48492:intron | 25.0% |
| !!! | TTTTTTTTGTGTTGGAAACT+CGG | + | chr3.1:80595504-80595523 | MS.gene48492:intron | 25.0% |
| AAAACCTATACAACTCTCTA+TGG | + | chr3.1:80595060-80595079 | MS.gene48492:intron | 30.0% | |
| AAAGATGAAATGGTGAATGT+GGG | - | chr3.1:80594046-80594065 | None:intergenic | 30.0% | |
| AAGCCAAAACAAATCTTTGT+AGG | + | chr3.1:80595595-80595614 | MS.gene48492:intron | 30.0% | |
| AATGCTTCCATTGAGTAAAA+AGG | - | chr3.1:80594800-80594819 | None:intergenic | 30.0% | |
| AATTTATTTGTACAAGGCTC+TGG | - | chr3.1:80596505-80596524 | None:intergenic | 30.0% | |
| AGGTACTTGAAAAAGAGTAA+CGG | - | chr3.1:80594724-80594743 | None:intergenic | 30.0% | |
| AGTGATGACTTTAATTGATG+AGG | + | chr3.1:80596692-80596711 | MS.gene48492:CDS | 30.0% | |
| ATGACTTTAATTGATGAGGA+TGG | + | chr3.1:80596696-80596715 | MS.gene48492:CDS | 30.0% | |
| ATGCTTCCATTGAGTAAAAA+GGG | - | chr3.1:80594799-80594818 | None:intergenic | 30.0% | |
| CATTTCCATGGACTTAAAAT+AGG | - | chr3.1:80595991-80596010 | None:intergenic | 30.0% | |
| GCATTCAAAGCAATAACTAA+AGG | - | chr3.1:80594744-80594763 | None:intergenic | 30.0% | |
| GCTAGTTGTATTGAATTGAA+AGG | - | chr3.1:80596536-80596555 | None:intergenic | 30.0% | |
| GTACATTATTAGAGTGAATG+AGG | + | chr3.1:80597308-80597327 | MS.gene48492:CDS | 30.0% | |
| TGACTTTAATTGATGAGGAT+GGG | + | chr3.1:80596697-80596716 | MS.gene48492:CDS | 30.0% | |
| TGGATGATCAGAATCTAAAT+CGG | - | chr3.1:80594342-80594361 | None:intergenic | 30.0% | |
| TTACAGACTTCTTTGTAAAC+AGG | - | chr3.1:80594011-80594030 | None:intergenic | 30.0% | |
| TTTAATCGTGCTATATACCT+TGG | + | chr3.1:80596910-80596929 | MS.gene48492:intron | 30.0% | |
| ! | AGAGATTAGTTACTGCTAAA+GGG | + | chr3.1:80596469-80596488 | MS.gene48492:intron | 30.0% |
| ! | GAATGTTCTTTTGAATACCA+AGG | - | chr3.1:80596930-80596949 | None:intergenic | 30.0% |
| ! | GGTCAACAAAATCTTGTTTA+AGG | + | chr3.1:80595343-80595362 | MS.gene48492:intron | 30.0% |
| ! | GGTTGCTAAAATTTTCTTTC+AGG | + | chr3.1:80597284-80597303 | MS.gene48492:intron | 30.0% |
| ! | TTTTTCCTGCAGAAATGATT+TGG | - | chr3.1:80596654-80596673 | None:intergenic | 30.0% |
| !! | AATGAATTTTTCTGGTGGAA+GGG | - | chr3.1:80595017-80595036 | None:intergenic | 30.0% |
| !! | GTTCCTACAAAGATTTGTTT+TGG | - | chr3.1:80595601-80595620 | None:intergenic | 30.0% |
| !! | TAATGAATTTTTCTGGTGGA+AGG | - | chr3.1:80595018-80595037 | None:intergenic | 30.0% |
| !! | TTGCTTTGAATGCTTTTCAA+TGG | + | chr3.1:80594751-80594770 | MS.gene48492:intron | 30.0% |
| !!! | GGTTTTGTTATTGGTTTCAA+TGG | + | chr3.1:80594613-80594632 | MS.gene48492:intron | 30.0% |
| AAAGTTAGTAGTCACTAGTC+AGG | - | chr3.1:80595147-80595166 | None:intergenic | 35.0% | |
| AATAAACAGAGTTCAAGCCA+TGG | - | chr3.1:80594643-80594662 | None:intergenic | 35.0% | |
| AATGCTCCCATTGAATAAAG+GGG | - | chr3.1:80594866-80594885 | None:intergenic | 35.0% | |
| ACATTCGTTGTAACTATCGT+TGG | + | chr3.1:80595210-80595229 | MS.gene48492:intron | 35.0% | |
| ACTTAAGTCTATAGCTCACA+TGG | + | chr3.1:80595900-80595919 | MS.gene48492:intron | 35.0% | |
| AGAATGCTCCCATTGAATAA+AGG | - | chr3.1:80594868-80594887 | None:intergenic | 35.0% | |
| ATTGCTCATAACCTTGTTGA+TGG | + | chr3.1:80596786-80596805 | MS.gene48492:CDS | 35.0% | |
| GAAAGATGAAATGGTGAATG+TGG | - | chr3.1:80594047-80594066 | None:intergenic | 35.0% | |
| GAATGCTCCCATTGAATAAA+GGG | - | chr3.1:80594867-80594886 | None:intergenic | 35.0% | |
| GACTTTAATTGATGAGGATG+GGG | + | chr3.1:80596698-80596717 | MS.gene48492:CDS | 35.0% | |
| GGAAGAGAATCAAAAGAGAA+TGG | + | chr3.1:80593839-80593858 | MS.gene48492:CDS | 35.0% | |
| TCAAGTCCCCTTTATTCAAT+GGG | + | chr3.1:80594857-80594876 | MS.gene48492:intron | 35.0% | |
| TGAGTCTCCAACTACATATT+TGG | + | chr3.1:80596722-80596741 | MS.gene48492:CDS | 35.0% | |
| TGCTTCCATTGAGTAAAAAG+GGG | - | chr3.1:80594798-80594817 | None:intergenic | 35.0% | |
| TTCAAGTCCCCTTTATTCAA+TGG | + | chr3.1:80594856-80594875 | MS.gene48492:intron | 35.0% | |
| TTGCTCATAACCTTGTTGAT+GGG | + | chr3.1:80596787-80596806 | MS.gene48492:CDS | 35.0% | |
| TTGTGAGCCAAATATGTAGT+TGG | - | chr3.1:80596732-80596751 | None:intergenic | 35.0% | |
| TTGTTTGTTCATTCATGCCT+TGG | + | chr3.1:80596867-80596886 | MS.gene48492:intron | 35.0% | |
| ! | AAGGTTTGTTCTTTCTTCTG+TGG | + | chr3.1:80594151-80594170 | MS.gene48492:intron | 35.0% |
| ! | ACATATTTGGCTCACAAAAC+AGG | + | chr3.1:80596735-80596754 | MS.gene48492:CDS | 35.0% |
| ! | CAGAGATTAGTTACTGCTAA+AGG | + | chr3.1:80596468-80596487 | MS.gene48492:intron | 35.0% |
| ! | CTTTTCAATGGAAGTTGTTG+AGG | + | chr3.1:80594763-80594782 | MS.gene48492:intron | 35.0% |
| ! | GCTTATGCACTTTTACTGAA+TGG | + | chr3.1:80594670-80594689 | MS.gene48492:intron | 35.0% |
| ! | TGATTACTTGGGTTAGACTA+GGG | - | chr3.1:80596212-80596231 | None:intergenic | 35.0% |
| ! | TGGTGGATATGATAAGTACA+GGG | + | chr3.1:80594244-80594263 | MS.gene48492:CDS | 35.0% |
| ! | TTATGCCCCTTTTTACTCAA+TGG | + | chr3.1:80594790-80594809 | MS.gene48492:intron | 35.0% |
| ! | TTGGTTTCAATGGTTTTCCA+TGG | + | chr3.1:80594623-80594642 | MS.gene48492:intron | 35.0% |
| !! | AGCATTGACTTGACAAAAGT+TGG | - | chr3.1:80594362-80594381 | None:intergenic | 35.0% |
| !! | ATGAATTTTTCTGGTGGAAG+GGG | - | chr3.1:80595016-80595035 | None:intergenic | 35.0% |
| !!! | TTTTTTCTGTGTAGATGTGG+TGG | + | chr3.1:80594227-80594246 | MS.gene48492:intron | 35.0% |
| AACACATAGGTGTACATCAG+AGG | - | chr3.1:80596255-80596274 | None:intergenic | 40.0% | |
| AACGAGCTCTTTCTTGATAG+GGG | - | chr3.1:80593949-80593968 | None:intergenic | 40.0% | |
| AATCTCACCGTTCATTTGTG+GGG | + | chr3.1:80595562-80595581 | MS.gene48492:intron | 40.0% | |
| ACAACGAGCTCTTTCTTGAT+AGG | - | chr3.1:80593951-80593970 | None:intergenic | 40.0% | |
| ACCCAAGTTGTAATTGTGAC+TGG | + | chr3.1:80595710-80595729 | MS.gene48492:intron | 40.0% | |
| ACTTCTTTGTAAACAGGAGC+AGG | - | chr3.1:80594005-80594024 | None:intergenic | 40.0% | |
| AGATAGAACACACACCACAA+AGG | + | chr3.1:80596049-80596068 | MS.gene48492:intron | 40.0% | |
| AGGAACTAACCCACCAAAAT+TGG | + | chr3.1:80595615-80595634 | MS.gene48492:intron | 40.0% | |
| AGGGGCTTGAAAGATTGTAA+CGG | - | chr3.1:80594913-80594932 | None:intergenic | 40.0% | |
| AGTACAGGGATTATTCGAAG+CGG | + | chr3.1:80594258-80594277 | MS.gene48492:CDS | 40.0% | |
| AGTTAAACGCACTGCATTCA+AGG | + | chr3.1:80596830-80596849 | MS.gene48492:CDS | 40.0% | |
| CAACGAGCTCTTTCTTGATA+GGG | - | chr3.1:80593950-80593969 | None:intergenic | 40.0% | |
| CAATCTCACCGTTCATTTGT+GGG | + | chr3.1:80595561-80595580 | MS.gene48492:intron | 40.0% | |
| CAGGAAAAACCTTCCAAAAC+GGG | + | chr3.1:80596665-80596684 | MS.gene48492:CDS | 40.0% | |
| GCAGGAAAAACCTTCCAAAA+CGG | + | chr3.1:80596664-80596683 | MS.gene48492:CDS | 40.0% | |
| GCCAGTCACAATTACAACTT+GGG | - | chr3.1:80595714-80595733 | None:intergenic | 40.0% | |
| GGTAGATGTGTTAAACACCA+AGG | - | chr3.1:80596887-80596906 | None:intergenic | 40.0% | |
| GTCACAATTACAACTTGGGT+TGG | - | chr3.1:80595710-80595729 | None:intergenic | 40.0% | |
| TAACCCACCAAAATTGGCAT+TGG | + | chr3.1:80595621-80595640 | MS.gene48492:intron | 40.0% | |
| TAGAATGGAAGCAATGGAGA+AGG | + | chr3.1:80594301-80594320 | MS.gene48492:CDS | 40.0% | |
| TAGAGTGAATGAGGGTAAAC+AGG | + | chr3.1:80597317-80597336 | MS.gene48492:CDS | 40.0% | |
| TGAAATGGTGAATGTGGGTT+AGG | - | chr3.1:80594041-80594060 | None:intergenic | 40.0% | |
| TGCATTCTTTGCTTCCTTTG+TGG | - | chr3.1:80595942-80595961 | None:intergenic | 40.0% | |
| TGCCAGTCACAATTACAACT+TGG | - | chr3.1:80595715-80595734 | None:intergenic | 40.0% | |
| TGCTCATAACCTTGTTGATG+GGG | + | chr3.1:80596788-80596807 | MS.gene48492:CDS | 40.0% | |
| ! | AGTGTGTTACTGTTGAGTGA+GGG | - | chr3.1:80596175-80596194 | None:intergenic | 40.0% |
| ! | ATCTAATGTAGGTGGGTTTC+TGG | - | chr3.1:80595436-80595455 | None:intergenic | 40.0% |
| ! | ATTCCCTCCAATGCCAATTT+TGG | - | chr3.1:80595631-80595650 | None:intergenic | 40.0% |
| ! | GAAATGGTGAATGTGGGTTA+GGG | - | chr3.1:80594040-80594059 | None:intergenic | 40.0% |
| ! | GTGATTACTTGGGTTAGACT+AGG | - | chr3.1:80596213-80596232 | None:intergenic | 40.0% |
| ! | TCCTGCAGAAATGATTTGGA+AGG | - | chr3.1:80596650-80596669 | None:intergenic | 40.0% |
| ! | TTAAAGCATCCCCATCAACA+AGG | - | chr3.1:80596800-80596819 | None:intergenic | 40.0% |
| !! | GTGGTGGATATGATAAGTAC+AGG | + | chr3.1:80594243-80594262 | MS.gene48492:CDS | 40.0% |
| !! | TCGCACCTATTTTAAGTCCA+TGG | + | chr3.1:80595983-80596002 | MS.gene48492:intron | 40.0% |
| !!! | AAGGTGAGGGTTTTGAAATG+GGG | - | chr3.1:80593914-80593933 | None:intergenic | 40.0% |
| !!! | GAAGGTGAGGGTTTTGAAAT+GGG | - | chr3.1:80593915-80593934 | None:intergenic | 40.0% |
| ACGCACAGTTGCTTGCTTAT+CGG | + | chr3.1:80595392-80595411 | MS.gene48492:intron | 45.0% | |
| ATCCACCAGTGACATGAGAT+TGG | - | chr3.1:80594385-80594404 | None:intergenic | 45.0% | |
| ATCTCACCGTTCATTTGTGG+GGG | + | chr3.1:80595563-80595582 | MS.gene48492:intron | 45.0% | |
| ATGAAAACCGAGACCTTGAG+AGG | + | chr3.1:80595649-80595668 | MS.gene48492:intron | 45.0% | |
| ATGCTCCAATCTCATGTCAC+TGG | + | chr3.1:80594377-80594396 | MS.gene48492:CDS | 45.0% | |
| ATTGGACCCCTCGAATTAGT+CGG | - | chr3.1:80595545-80595564 | None:intergenic | 45.0% | |
| CACAAAACAGGACTTAGTGC+TGG | + | chr3.1:80596747-80596766 | MS.gene48492:CDS | 45.0% | |
| CCAAGTAATCACACACACAC+GGG | + | chr3.1:80596221-80596240 | MS.gene48492:intron | 45.0% | |
| CCAATCTCACCGTTCATTTG+TGG | + | chr3.1:80595560-80595579 | MS.gene48492:intron | 45.0% | |
| CCACAAATGAACGGTGAGAT+TGG | - | chr3.1:80595563-80595582 | None:intergenic | 45.0% | |
| CCCAAGTAATCACACACACA+CGG | + | chr3.1:80596220-80596239 | MS.gene48492:intron | 45.0% | |
| CCGTGTGTGTGTGATTACTT+GGG | - | chr3.1:80596223-80596242 | None:intergenic | 45.0% | |
| CGAAGCTAGAATGGAAGCAA+TGG | + | chr3.1:80594295-80594314 | MS.gene48492:CDS | 45.0% | |
| CGCTCCATAGAGAGTTGTAT+AGG | - | chr3.1:80595067-80595086 | None:intergenic | 45.0% | |
| GAGCTTAGATCACACCACAA+AGG | + | chr3.1:80595925-80595944 | MS.gene48492:intron | 45.0% | |
| GCCTTCCAAATCATTTCTGC+AGG | + | chr3.1:80596646-80596665 | MS.gene48492:CDS | 45.0% | |
| GGGGACTTGAAAGATTGTAG+CGG | - | chr3.1:80594847-80594866 | None:intergenic | 45.0% | |
| GTAAACAGGAGCAGGCATAT+TGG | - | chr3.1:80593997-80594016 | None:intergenic | 45.0% | |
| GTACAGGGATTATTCGAAGC+GGG | + | chr3.1:80594259-80594278 | MS.gene48492:CDS | 45.0% | |
| GTGAAGTGATTGAGAGAGCT+TGG | - | chr3.1:80593880-80593899 | None:intergenic | 45.0% | |
| GTGTGAGCTATCAACTCACA+AGG | - | chr3.1:80596019-80596038 | None:intergenic | 45.0% | |
| TGCGTTCTTTGCTTCCTTTG+TGG | - | chr3.1:80596066-80596085 | None:intergenic | 45.0% | |
| TGTGTTGGAAACTCGGTATC+TGG | + | chr3.1:80595511-80595530 | MS.gene48492:intron | 45.0% | |
| TTAGAACAGCACACAGCACA+TGG | - | chr3.1:80597071-80597090 | None:intergenic | 45.0% | |
| TTTGGCATGCCTCAACAACA+GGG | + | chr3.1:80596624-80596643 | MS.gene48492:intron | 45.0% | |
| ! | AAACAGGACTTAGTGCTGGA+TGG | + | chr3.1:80596751-80596770 | MS.gene48492:CDS | 45.0% |
| ! | CCACCAAAATTGGCATTGGA+GGG | + | chr3.1:80595625-80595644 | MS.gene48492:intron | 45.0% |
| ! | CTCGTTGTTGTTCGAAGATC+CGG | + | chr3.1:80593963-80593982 | MS.gene48492:CDS | 45.0% |
| ! | GAGTGTGTTACTGTTGAGTG+AGG | - | chr3.1:80596176-80596195 | None:intergenic | 45.0% |
| ! | GTGCTGTTAGCTTGAAACCT+TGG | - | chr3.1:80595683-80595702 | None:intergenic | 45.0% |
| ! | TTTTGGCATGCCTCAACAAC+AGG | + | chr3.1:80596623-80596642 | MS.gene48492:intron | 45.0% |
| !! | AATTACAACTTGGGTTGGCC+TGG | - | chr3.1:80595705-80595724 | None:intergenic | 45.0% |
| !! | CACAAGGAAGAGCATTTCCA+TGG | - | chr3.1:80596003-80596022 | None:intergenic | 45.0% |
| !! | CCTCCAATGCCAATTTTGGT+GGG | - | chr3.1:80595627-80595646 | None:intergenic | 45.0% |
| !! | TGCTTCCATTCTAGCTTCGT+CGG | - | chr3.1:80594294-80594313 | None:intergenic | 45.0% |
| !!! | AGGTGAGGGTTTTGAAATGG+GGG | - | chr3.1:80593913-80593932 | None:intergenic | 45.0% |
| !!! | GGAAGGTGAGGGTTTTGAAA+TGG | - | chr3.1:80593916-80593935 | None:intergenic | 45.0% |
| ATGAGGCCCCCACAAATGAA+CGG | - | chr3.1:80595572-80595591 | None:intergenic | 50.0% | |
| CAAGGACCGACTAATTCGAG+GGG | + | chr3.1:80595536-80595555 | MS.gene48492:intron | 50.0% | |
| CCAAGGACCGACTAATTCGA+GGG | + | chr3.1:80595535-80595554 | MS.gene48492:intron | 50.0% | |
| CCCGTGTGTGTGTGATTACT+TGG | - | chr3.1:80596224-80596243 | None:intergenic | 50.0% | |
| CCTCGAATTAGTCGGTCCTT+GGG | - | chr3.1:80595537-80595556 | None:intergenic | 50.0% | |
| CTCCAATCTCATGTCACTGG+TGG | + | chr3.1:80594380-80594399 | MS.gene48492:CDS | 50.0% | |
| GGTTTCAAGCTAACAGCACC+AGG | + | chr3.1:80595684-80595703 | MS.gene48492:intron | 50.0% | |
| GTAATCACACACACACGGGT+TGG | + | chr3.1:80596225-80596244 | MS.gene48492:intron | 50.0% | |
| TTTGGAAGGCCCTGTTGTTG+AGG | - | chr3.1:80596636-80596655 | None:intergenic | 50.0% | |
| ! | CCCACCAAAATTGGCATTGG+AGG | + | chr3.1:80595624-80595643 | MS.gene48492:intron | 50.0% |
| ! | CCCTCCAATGCCAATTTTGG+TGG | - | chr3.1:80595628-80595647 | None:intergenic | 50.0% |
| ! | GTCATCACTTCGTCCCGTTT+TGG | - | chr3.1:80596681-80596700 | None:intergenic | 50.0% |
| ! | TCTTTCTTGATAGGGGTGCG+AGG | - | chr3.1:80593942-80593961 | None:intergenic | 50.0% |
| !! | CTCATGTCACTGGTGGATTC+TGG | + | chr3.1:80594387-80594406 | MS.gene48492:CDS | 50.0% |
| !! | GGTGAATGTGGGTTAGGGTT+TGG | - | chr3.1:80594035-80594054 | None:intergenic | 50.0% |
| !! | TCACTTCGTCCCGTTTTGGA+AGG | - | chr3.1:80596677-80596696 | None:intergenic | 50.0% |
| !! | TTTTCTGGTGGAAGGGGAGA+GGG | - | chr3.1:80595010-80595029 | None:intergenic | 50.0% |
| !! | TTTTTCTGGTGGAAGGGGAG+AGG | - | chr3.1:80595011-80595030 | None:intergenic | 50.0% |
| AGGCATATTGGCGACACGAC+CGG | - | chr3.1:80593985-80594004 | None:intergenic | 55.0% | |
| CCCAAGGACCGACTAATTCG+AGG | + | chr3.1:80595534-80595553 | MS.gene48492:intron | 55.0% | |
| CCCTCGAATTAGTCGGTCCT+TGG | - | chr3.1:80595538-80595557 | None:intergenic | 55.0% | |
| CTTGGAGTGTGCTCCTCTCA+AGG | - | chr3.1:80595665-80595684 | None:intergenic | 55.0% | |
| GAAACTCGGTATCTGGCCCA+AGG | + | chr3.1:80595518-80595537 | MS.gene48492:intron | 55.0% | |
| GTGCGAGGTTTGGAAGGTGA+GGG | - | chr3.1:80593927-80593946 | None:intergenic | 55.0% | |
| GTGTGCTCCTCTCAAGGTCT+CGG | - | chr3.1:80595659-80595678 | None:intergenic | 55.0% | |
| TGCGTCCGACGAAGCTAGAA+TGG | + | chr3.1:80594286-80594305 | MS.gene48492:CDS | 55.0% | |
| ! | ATAGGGGTGCGAGGTTTGGA+AGG | - | chr3.1:80593933-80593952 | None:intergenic | 55.0% |
| ! | CTTGAGAGGAGCACACTCCA+AGG | + | chr3.1:80595663-80595682 | MS.gene48492:intron | 55.0% |
| ! | CTTGATAGGGGTGCGAGGTT+TGG | - | chr3.1:80593937-80593956 | None:intergenic | 55.0% |
| ! | GGACTTAGTGCTGGATGGAG+AGG | + | chr3.1:80596756-80596775 | MS.gene48492:CDS | 55.0% |
| ! | TTTCTGGTGGAAGGGGAGAG+GGG | - | chr3.1:80595009-80595028 | None:intergenic | 55.0% |
| !! | TGTCACTGGTGGATTCTGGC+TGG | + | chr3.1:80594391-80594410 | MS.gene48492:CDS | 55.0% |
| GGTGCGAGGTTTGGAAGGTG+AGG | - | chr3.1:80593928-80593947 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 80593837 | 80597347 | 80593837 | ID=MS.gene48492 |
| chr3.1 | mRNA | 80593837 | 80597347 | 80593837 | ID=MS.gene48492.t1;Parent=MS.gene48492 |
| chr3.1 | exon | 80593837 | 80594022 | 80593837 | ID=MS.gene48492.t1.exon1;Parent=MS.gene48492.t1 |
| chr3.1 | CDS | 80593837 | 80594022 | 80593837 | ID=cds.MS.gene48492.t1;Parent=MS.gene48492.t1 |
| chr3.1 | exon | 80594110 | 80594153 | 80594110 | ID=MS.gene48492.t1.exon2;Parent=MS.gene48492.t1 |
| chr3.1 | CDS | 80594110 | 80594153 | 80594110 | ID=cds.MS.gene48492.t1;Parent=MS.gene48492.t1 |
| chr3.1 | exon | 80594241 | 80594412 | 80594241 | ID=MS.gene48492.t1.exon3;Parent=MS.gene48492.t1 |
| chr3.1 | CDS | 80594241 | 80594412 | 80594241 | ID=cds.MS.gene48492.t1;Parent=MS.gene48492.t1 |
| chr3.1 | exon | 80596645 | 80596851 | 80596645 | ID=MS.gene48492.t1.exon4;Parent=MS.gene48492.t1 |
| chr3.1 | CDS | 80596645 | 80596851 | 80596645 | ID=cds.MS.gene48492.t1;Parent=MS.gene48492.t1 |
| chr3.1 | exon | 80597306 | 80597347 | 80597306 | ID=MS.gene48492.t1.exon5;Parent=MS.gene48492.t1 |
| chr3.1 | CDS | 80597306 | 80597347 | 80597306 | ID=cds.MS.gene48492.t1;Parent=MS.gene48492.t1 |
| Gene Sequence |
| Protein sequence |
