Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48692.t1 | XP_003602607.1 | 93.3 | 210 | 14 | 0 | 59 | 268 | 72 | 281 | 6.00E-105 | 390.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48692.t1 | O35130 | 53.2 | 205 | 92 | 2 | 64 | 268 | 43 | 243 | 1.4e-54 | 214.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48692.t1 | G7JBJ8 | 93.3 | 210 | 14 | 0 | 59 | 268 | 72 | 281 | 4.3e-105 | 390.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene48692 | MS.gene023799 | PPI |
| MS.gene48692 | MS.gene52173 | PPI |
| MS.gene48692 | MS.gene72768 | PPI |
| MS.gene42236 | MS.gene48692 | PPI |
| MS.gene27648 | MS.gene48692 | PPI |
| MS.gene48692 | MS.gene29448 | PPI |
| MS.gene029825 | MS.gene48692 | PPI |
| MS.gene48692 | MS.gene053381 | PPI |
| MS.gene48692 | MS.gene23314 | PPI |
| MS.gene75013 | MS.gene48692 | PPI |
| MS.gene48692 | MS.gene82426 | PPI |
| MS.gene48692 | MS.gene50744 | PPI |
| MS.gene48692 | MS.gene89206 | PPI |
| MS.gene48692 | MS.gene65479 | PPI |
| MS.gene003693 | MS.gene48692 | PPI |
| MS.gene48692 | MS.gene019309 | PPI |
| MS.gene017434 | MS.gene48692 | PPI |
| MS.gene042172 | MS.gene48692 | PPI |
| MS.gene48692 | MS.gene063568 | PPI |
| MS.gene59369 | MS.gene48692 | PPI |
| MS.gene012655 | MS.gene48692 | PPI |
| MS.gene48692 | MS.gene26077 | PPI |
| MS.gene48692 | MS.gene83444 | PPI |
| MS.gene48692 | MS.gene015586 | PPI |
| MS.gene028153 | MS.gene48692 | PPI |
| MS.gene063209 | MS.gene48692 | PPI |
| MS.gene48692 | MS.gene072782 | PPI |
| MS.gene48692 | MS.gene68942 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48692.t1 | MTR_3g096190 | 89.888 | 267 | 22 | 2 | 4 | 268 | 18 | 281 | 2.04e-171 | 474 |
| MS.gene48692.t1 | MTR_4g032390 | 87.266 | 267 | 31 | 2 | 4 | 268 | 18 | 283 | 1.21e-167 | 465 |
| MS.gene48692.t1 | MTR_3g096190 | 89.175 | 194 | 16 | 2 | 4 | 195 | 18 | 208 | 3.35e-117 | 335 |
| MS.gene48692.t1 | MTR_5g464770 | 50.000 | 220 | 100 | 3 | 59 | 268 | 19 | 238 | 1.15e-68 | 212 |
| MS.gene48692.t1 | MTR_1g112880 | 52.663 | 169 | 79 | 1 | 100 | 268 | 2 | 169 | 1.08e-58 | 184 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48692.t1 | AT3G57000 | 65.289 | 242 | 79 | 4 | 31 | 268 | 57 | 297 | 4.88e-113 | 327 |
Find 55 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTCTTGGTATACGAATAT+AGG | 0.277413 | 4.3:+68388153 | None:intergenic |
| GCGAACCGTTTGAATGTTCT+TGG | 0.280296 | 4.3:+68388139 | None:intergenic |
| GAGAGTTGACGGGCAAATAC+TGG | 0.282558 | 4.3:+68387891 | None:intergenic |
| TTCTGAAGATTTGGTTTCTT+AGG | 0.304076 | 4.3:+68390649 | None:intergenic |
| TACAGTAAGCAGCACTTAAT+TGG | 0.314750 | 4.3:+68386959 | None:intergenic |
| TGAAGCTGGGAGGTTGAAAA+TGG | 0.328722 | 4.3:-68388218 | MS.gene48692:CDS |
| TGTTCCTCGTTCTGAAGATT+TGG | 0.333064 | 4.3:+68390640 | None:intergenic |
| GCAAGGATCCTGGTCATTAC+AGG | 0.339703 | 4.3:-68389486 | MS.gene48692:CDS |
| GTTCTTGGTATACGAATATA+GGG | 0.345230 | 4.3:+68388154 | None:intergenic |
| ACGGGCAAATACTGGGTTAC+GGG | 0.353988 | 4.3:+68387899 | None:intergenic |
| CAATCAGGACCTTGTCTTTG+TGG | 0.379821 | 4.3:-68387512 | MS.gene48692:intron |
| AACCTCCCAGCTTCATTTAG+TGG | 0.408647 | 4.3:+68388226 | None:intergenic |
| CAGGCCTGACATTTGTCATC+AGG | 0.410963 | 4.3:-68389467 | MS.gene48692:intron |
| GTCGACAATTCCAAGCAATC+AGG | 0.414223 | 4.3:-68387527 | MS.gene48692:CDS |
| GTATACATAAGGACTGAAAA+AGG | 0.415050 | 4.3:-68388196 | MS.gene48692:CDS |
| ACCTCCCAGCTTCATTTAGT+GGG | 0.415325 | 4.3:+68388227 | None:intergenic |
| CAGGATCCTTGCTATGTTTG+AGG | 0.426564 | 4.3:+68389497 | None:intergenic |
| AAGGATTACTAATGCTATTG+AGG | 0.435293 | 4.3:-68386932 | MS.gene48692:CDS |
| TCTTTAGAAGTCGCTAAAGT+TGG | 0.449255 | 4.3:-68390505 | MS.gene48692:CDS |
| TGGAATTGTCGACAAATACT+TGG | 0.452521 | 4.3:+68387537 | None:intergenic |
| AGATTTGGTTTCTTAGGTGT+TGG | 0.452992 | 4.3:+68390655 | None:intergenic |
| TACATAGATGATTATATAGC+TGG | 0.453978 | 4.3:-68387375 | MS.gene48692:intron |
| ATCTTATAGTTCAGAGAAGC+TGG | 0.455879 | 4.3:-68387569 | MS.gene48692:CDS |
| AGGATTACTAATGCTATTGA+GGG | 0.461127 | 4.3:-68386931 | MS.gene48692:CDS |
| GTTTCGTCGGTTGCTTCTGT+TGG | 0.469389 | 4.3:+68390610 | None:intergenic |
| CCCGTCAACTCTCGAAAAGC+AGG | 0.471030 | 4.3:-68387881 | MS.gene48692:intron |
| GACAGCCCACTAAATGAAGC+TGG | 0.478319 | 4.3:-68388232 | MS.gene48692:CDS |
| AAGACAAGGTCCTGATTGCT+TGG | 0.489499 | 4.3:+68387517 | None:intergenic |
| AAATTGAGTATAACTGCTGC+TGG | 0.491203 | 4.3:-68387956 | MS.gene48692:CDS |
| CTAATTTAAGGTTGGAGCAA+TGG | 0.500486 | 4.3:-68387421 | MS.gene48692:intron |
| ACCGACGAAACTGAACTTCC+TGG | 0.505847 | 4.3:-68390598 | MS.gene48692:CDS |
| CTAATGCTATTGAGGGAAAG+TGG | 0.509443 | 4.3:-68386924 | MS.gene48692:CDS |
| GGTTGAAAATGGTATACATA+AGG | 0.511316 | 4.3:-68388207 | MS.gene48692:CDS |
| CGGGCAAATACTGGGTTACG+GGG | 0.520947 | 4.3:+68387900 | None:intergenic |
| GACGGGCAAATACTGGGTTA+CGG | 0.523874 | 4.3:+68387898 | None:intergenic |
| GTGCTGCTTACTGTATTACA+AGG | 0.530206 | 4.3:-68386951 | MS.gene48692:CDS |
| ACCAGGAAGTTCAGTTTCGT+CGG | 0.530441 | 4.3:+68390597 | None:intergenic |
| AGAGTTGACGGGCAAATACT+GGG | 0.541627 | 4.3:+68387892 | None:intergenic |
| AAGGTTGGAGCAATGGCACA+TGG | 0.543720 | 4.3:-68387414 | MS.gene48692:CDS |
| AAAGGAGCAATTGGAATACC+AGG | 0.551218 | 4.3:+68390580 | None:intergenic |
| GTATACCAAGAACATTCAAA+CGG | 0.555694 | 4.3:-68388144 | MS.gene48692:CDS |
| AGAACATTCAAACGGTTCGC+TGG | 0.560529 | 4.3:-68388136 | MS.gene48692:CDS |
| TGGAGCAATGGCACATGGGA+AGG | 0.561421 | 4.3:-68387409 | MS.gene48692:CDS |
| CCAACCTGATGACAAATGTC+AGG | 0.572185 | 4.3:+68389463 | None:intergenic |
| CTCAAACATAGCAAGGATCC+TGG | 0.576032 | 4.3:-68389496 | MS.gene48692:CDS |
| TTTCCTCCTCAAACATAGCA+AGG | 0.576580 | 4.3:-68389503 | MS.gene48692:CDS |
| AGAAGTCGCTAAAGTTGGCA+AGG | 0.591319 | 4.3:-68390500 | MS.gene48692:intron |
| ATGTCAGGCCTGTAATGACC+AGG | 0.605340 | 4.3:+68389478 | None:intergenic |
| ACAGCCCACTAAATGAAGCT+GGG | 0.616951 | 4.3:-68388231 | MS.gene48692:CDS |
| GATCCTTGCTATGTTTGAGG+AGG | 0.628340 | 4.3:+68389500 | None:intergenic |
| GAAAAGAATAGTGAGAAACA+AGG | 0.661309 | 4.3:-68390553 | MS.gene48692:CDS |
| AGGTTGGAGCAATGGCACAT+GGG | 0.675683 | 4.3:-68387413 | MS.gene48692:CDS |
| GAAACCAAATCTTCAGAACG+AGG | 0.704893 | 4.3:-68390644 | MS.gene48692:CDS |
| TAGGGAGTACCACAAAGACA+AGG | 0.712278 | 4.3:+68387503 | None:intergenic |
| GCCCACTAAATGAAGCTGGG+AGG | 0.723058 | 4.3:-68388228 | MS.gene48692:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TACATATATGATTTTTTAAT+GGG | - | chr4.3:68387948-68387967 | MS.gene48692:CDS | 10.0% |
| !!! | TTACATATATGATTTTTTAA+TGG | - | chr4.3:68387947-68387966 | MS.gene48692:CDS | 10.0% |
| !! | TAAAAATAAGTCAATTCAAA+TGG | + | chr4.3:68387379-68387398 | None:intergenic | 15.0% |
| !!! | TGATACATTTCTAAAAATTA+AGG | - | chr4.3:68389242-68389261 | MS.gene48692:intron | 15.0% |
| !!! | TTTAATTTTTTTTTTTGGTG+TGG | - | chr4.3:68389591-68389610 | MS.gene48692:intron | 15.0% |
| !!! | TTTATTTATACAAGGTTTTT+AGG | - | chr4.3:68387291-68387310 | MS.gene48692:intron | 15.0% |
| !! | AAAAAATAAGTCAATCCAAA+CGG | - | chr4.3:68387569-68387588 | MS.gene48692:CDS | 20.0% |
| !! | ACAATCACTCATTTATATAA+AGG | + | chr4.3:68387597-68387616 | None:intergenic | 20.0% |
| !! | CAATCACTCATTTATATAAA+GGG | + | chr4.3:68387596-68387615 | None:intergenic | 20.0% |
| !! | CTTATTTATTTATTTGCGTA+AGG | - | chr4.3:68387531-68387550 | MS.gene48692:CDS | 20.0% |
| !! | GATTATTTGTAGTAATTCTT+GGG | - | chr4.3:68388665-68388684 | MS.gene48692:intron | 20.0% |
| !! | TGATTATTTGTAGTAATTCT+TGG | - | chr4.3:68388664-68388683 | MS.gene48692:intron | 20.0% |
| !! | TGTGAATCAAATTATTGTTT+GGG | - | chr4.3:68388405-68388424 | MS.gene48692:intron | 20.0% |
| !! | TTGGCTTATTTATTTATACA+AGG | - | chr4.3:68387283-68387302 | MS.gene48692:intron | 20.0% |
| !!! | AATACAATCTTTTTTGCTTT+TGG | - | chr4.3:68388712-68388731 | MS.gene48692:intron | 20.0% |
| !!! | ATATGTACATAAGTTGTTTT+TGG | - | chr4.3:68387264-68387283 | MS.gene48692:intron | 20.0% |
| !!! | ATATTACAAGACAATTTTGT+AGG | - | chr4.3:68389068-68389087 | MS.gene48692:intron | 20.0% |
| !!! | CTATATAAAATGTTGTTTTC+AGG | - | chr4.3:68389361-68389380 | MS.gene48692:intron | 20.0% |
| !!! | CTTTTGAATGATCTAATTTA+AGG | - | chr4.3:68390200-68390219 | MS.gene48692:intron | 20.0% |
| !!! | GCAAATATTATCATATTTTG+AGG | - | chr4.3:68389299-68389318 | MS.gene48692:intron | 20.0% |
| !!! | TACAACTGATAAAAACATTT+TGG | + | chr4.3:68388198-68388217 | None:intergenic | 20.0% |
| !!! | TATTACAAGACAATTTTGTA+GGG | - | chr4.3:68389069-68389088 | MS.gene48692:intron | 20.0% |
| ! | AAAAATAAGTCAATCCAAAC+GGG | - | chr4.3:68387570-68387589 | MS.gene48692:CDS | 25.0% |
| ! | AAAATTGTACATTCTTTGAG+GGG | + | chr4.3:68388639-68388658 | None:intergenic | 25.0% |
| ! | AAACACAACAGTATACAAAA+AGG | + | chr4.3:68389994-68390013 | None:intergenic | 25.0% |
| ! | AAATAGCAGTTATAAGTACA+AGG | + | chr4.3:68389923-68389942 | None:intergenic | 25.0% |
| ! | AAATTTCAAGATAGCATCAT+AGG | - | chr4.3:68388904-68388923 | MS.gene48692:intron | 25.0% |
| ! | AAGATAAACCTAACATTCAA+AGG | + | chr4.3:68390049-68390068 | None:intergenic | 25.0% |
| ! | AATAAGCTGAAAACATCTTA+TGG | + | chr4.3:68390425-68390444 | None:intergenic | 25.0% |
| ! | AATCATCAACTGAGATAAAT+AGG | + | chr4.3:68390178-68390197 | None:intergenic | 25.0% |
| ! | AATTGTTTCCTTTGAATGTT+AGG | - | chr4.3:68390038-68390057 | MS.gene48692:intron | 25.0% |
| ! | ACCAAAAATGTGTTTATAAG+TGG | - | chr4.3:68388827-68388846 | MS.gene48692:intron | 25.0% |
| ! | ATAAGCTGAAAACATCTTAT+GGG | + | chr4.3:68390424-68390443 | None:intergenic | 25.0% |
| ! | ATATGATAATCGTTTATGAG+AGG | - | chr4.3:68387759-68387778 | MS.gene48692:intron | 25.0% |
| ! | ATTTGATTCACAGTATTTGT+CGG | + | chr4.3:68388397-68388416 | None:intergenic | 25.0% |
| ! | CAAAATTGTACATTCTTTGA+GGG | + | chr4.3:68388640-68388659 | None:intergenic | 25.0% |
| ! | CTGTGAATCAAATTATTGTT+TGG | - | chr4.3:68388404-68388423 | MS.gene48692:intron | 25.0% |
| ! | CTTAATATATTTGTGCACAA+TGG | - | chr4.3:68390593-68390612 | MS.gene48692:CDS | 25.0% |
| ! | GAACAATAGAACAGAAAAAT+AGG | + | chr4.3:68389162-68389181 | None:intergenic | 25.0% |
| ! | GTTAATACTATAGCATTGTA+GGG | + | chr4.3:68389874-68389893 | None:intergenic | 25.0% |
| ! | TACATAGATGATTATATAGC+TGG | - | chr4.3:68390258-68390277 | MS.gene48692:intron | 25.0% |
| ! | TATGATGCTATCTTGAAATT+TGG | + | chr4.3:68388905-68388924 | None:intergenic | 25.0% |
| ! | TATTTATCATATTTAGCGTG+AGG | + | chr4.3:68388348-68388367 | None:intergenic | 25.0% |
| ! | TGTTAATACTATAGCATTGT+AGG | + | chr4.3:68389875-68389894 | None:intergenic | 25.0% |
| !! | TCACTATTCTTTTCATTCAA+AGG | + | chr4.3:68387074-68387093 | None:intergenic | 25.0% |
| !! | TCATAACTGAGTCAAAATTT+TGG | + | chr4.3:68388742-68388761 | None:intergenic | 25.0% |
| !! | TCCACTTATAAACACATTTT+TGG | + | chr4.3:68388831-68388850 | None:intergenic | 25.0% |
| !! | TGAATGATCTAATTTAAGGT+TGG | - | chr4.3:68390204-68390223 | MS.gene48692:intron | 25.0% |
| !! | TTGTTTACAGGGTAAATTTT+TGG | - | chr4.3:68387620-68387639 | MS.gene48692:intron | 25.0% |
| !!! | CATTCACTTTTCCTTAAATT+TGG | - | chr4.3:68390294-68390313 | MS.gene48692:intron | 25.0% |
| !!! | GTAGTCATTTTTTAAACCAT+TGG | + | chr4.3:68389795-68389814 | None:intergenic | 25.0% |
| !!! | TTATACAAGGTTTTTAGGTT+AGG | - | chr4.3:68387296-68387315 | MS.gene48692:intron | 25.0% |
| !!! | TTTGTTTTCATAAGCTATCT+AGG | + | chr4.3:68390460-68390479 | None:intergenic | 25.0% |
| AAGGATTACTAATGCTATTG+AGG | - | chr4.3:68390701-68390720 | MS.gene48692:CDS | 30.0% | |
| AGAATCAGATTTCAAGGTTA+TGG | + | chr4.3:68388465-68388484 | None:intergenic | 30.0% | |
| AGGAATTTGAAAATTGAGCT+AGG | + | chr4.3:68390152-68390171 | None:intergenic | 30.0% | |
| AGGATTACTAATGCTATTGA+GGG | - | chr4.3:68390702-68390721 | MS.gene48692:CDS | 30.0% | |
| ATACGAAAAGAATTTGACTC+TGG | - | chr4.3:68387351-68387370 | MS.gene48692:intron | 30.0% | |
| ATTAAACGGTTATCCAAACA+AGG | - | chr4.3:68387839-68387858 | MS.gene48692:intron | 30.0% | |
| ATTTGACTGTGTTAACACTT+AGG | - | chr4.3:68389541-68389560 | MS.gene48692:CDS | 30.0% | |
| ATTTGTGCACAATGGAAAAA+AGG | - | chr4.3:68390601-68390620 | MS.gene48692:CDS | 30.0% | |
| CCAAAATTGTACATTCTTTG+AGG | + | chr4.3:68388641-68388660 | None:intergenic | 30.0% | |
| CCTAATAGAATCAGATTTCA+AGG | + | chr4.3:68388471-68388490 | None:intergenic | 30.0% | |
| CCTTGAAATCTGATTCTATT+AGG | - | chr4.3:68388468-68388487 | MS.gene48692:intron | 30.0% | |
| GAAAAGAATAGTGAGAAACA+AGG | - | chr4.3:68387080-68387099 | MS.gene48692:intron | 30.0% | |
| GACAATACATTAAAGCTTTG+AGG | + | chr4.3:68388548-68388567 | None:intergenic | 30.0% | |
| GCTATAACCTCTTCATTAAA+CGG | - | chr4.3:68387825-68387844 | MS.gene48692:intron | 30.0% | |
| GCTATCTTGAAATTTGGATT+AGG | + | chr4.3:68388899-68388918 | None:intergenic | 30.0% | |
| GGAATTTGAAAATTGAGCTA+GGG | + | chr4.3:68390151-68390170 | None:intergenic | 30.0% | |
| GGTTGAAAATGGTATACATA+AGG | - | chr4.3:68389426-68389445 | MS.gene48692:intron | 30.0% | |
| GTATACATAAGGACTGAAAA+AGG | - | chr4.3:68389437-68389456 | MS.gene48692:intron | 30.0% | |
| GTATACCAAGAACATTCAAA+CGG | - | chr4.3:68389489-68389508 | MS.gene48692:CDS | 30.0% | |
| GTTCTTGGTATACGAATATA+GGG | + | chr4.3:68389482-68389501 | None:intergenic | 30.0% | |
| TACGAAAAGAATTTGACTCT+GGG | - | chr4.3:68387352-68387371 | MS.gene48692:intron | 30.0% | |
| TCAGAAAACACAATGAAGTA+AGG | + | chr4.3:68390638-68390657 | None:intergenic | 30.0% | |
| TGTTCTTGGTATACGAATAT+AGG | + | chr4.3:68389483-68389502 | None:intergenic | 30.0% | |
| TTCATTCACATAGTCTCTAA+AGG | - | chr4.3:68387864-68387883 | MS.gene48692:intron | 30.0% | |
| TTTAAGGAAAAGTGAATGCA+AGG | + | chr4.3:68390292-68390311 | None:intergenic | 30.0% | |
| TTTAGAGACTATGTGAATGA+AGG | + | chr4.3:68387865-68387884 | None:intergenic | 30.0% | |
| ! | AAATTGTACATTCTTTGAGG+GGG | + | chr4.3:68388638-68388657 | None:intergenic | 30.0% |
| ! | CCTCAAAGAATGTACAATTT+TGG | - | chr4.3:68388638-68388657 | MS.gene48692:intron | 30.0% |
| ! | TAACTGAGTCAAAATTTTGG+TGG | + | chr4.3:68388739-68388758 | None:intergenic | 30.0% |
| ! | TAGTTATTGTTGTTGTCCAA+TGG | - | chr4.3:68389776-68389795 | MS.gene48692:intron | 30.0% |
| ! | TTCTGAAGATTTGGTTTCTT+AGG | + | chr4.3:68386987-68387006 | None:intergenic | 30.0% |
| ! | TTTTCATTCAAAGGAGCAAT+TGG | + | chr4.3:68387065-68387084 | None:intergenic | 30.0% |
| !! | AGTGATTGTGATTTGTTTAC+AGG | - | chr4.3:68387608-68387627 | MS.gene48692:intron | 30.0% |
| !! | GTGATTGTGATTTGTTTACA+GGG | - | chr4.3:68387609-68387628 | MS.gene48692:intron | 30.0% |
| !! | TACAAGGTGTTGTTAAATAG+TGG | + | chr4.3:68389907-68389926 | None:intergenic | 30.0% |
| !!! | TGATTTTGTTGGGTTGATTA+AGG | - | chr4.3:68388873-68388892 | MS.gene48692:intron | 30.0% |
| !!! | TTTTAACTTGTGAAGATCTC+AGG | - | chr4.3:68387683-68387702 | MS.gene48692:intron | 30.0% |
| AAATTGAGTATAACTGCTGC+TGG | - | chr4.3:68389677-68389696 | MS.gene48692:intron | 35.0% | |
| AACAAAATCAGCTTGTAGGT+AGG | + | chr4.3:68388863-68388882 | None:intergenic | 35.0% | |
| ACAAAATCAGCTTGTAGGTA+GGG | + | chr4.3:68388862-68388881 | None:intergenic | 35.0% | |
| ACATCTTATGGGATGTCAAA+AGG | + | chr4.3:68390413-68390432 | None:intergenic | 35.0% | |
| ACGCTCAAGATATACAGAAT+TGG | - | chr4.3:68388969-68388988 | MS.gene48692:intron | 35.0% | |
| AGCAGCATAAACATCAAACT+AGG | + | chr4.3:68388240-68388259 | None:intergenic | 35.0% | |
| AGTACTGTGTATACTATTGC+TGG | - | chr4.3:68389189-68389208 | MS.gene48692:intron | 35.0% | |
| ATAGCAAACCCAGAAAATCT+TGG | + | chr4.3:68388934-68388953 | None:intergenic | 35.0% | |
| ATCTTATAGTTCAGAGAAGC+TGG | - | chr4.3:68390064-68390083 | MS.gene48692:intron | 35.0% | |
| ATTCACTTCACAGAAAGTAG+AGG | - | chr4.3:68387710-68387729 | MS.gene48692:intron | 35.0% | |
| ATTTATATAAAGGGCCCGTT+TGG | + | chr4.3:68387587-68387606 | None:intergenic | 35.0% | |
| CAACTGAGATAAATAGGCAA+AGG | + | chr4.3:68390172-68390191 | None:intergenic | 35.0% | |
| CGCTCAAGATATACAGAATT+GGG | - | chr4.3:68388970-68388989 | MS.gene48692:intron | 35.0% | |
| CTCCTACTTATAACACTTTC+AGG | + | chr4.3:68389039-68389058 | None:intergenic | 35.0% | |
| GATCGCAGAAAATAACAGTT+CGG | - | chr4.3:68389835-68389854 | MS.gene48692:intron | 35.0% | |
| TAAGCATTTGTGAGACTGTT+TGG | - | chr4.3:68390370-68390389 | MS.gene48692:intron | 35.0% | |
| TACAGTAAGCAGCACTTAAT+TGG | + | chr4.3:68390677-68390696 | None:intergenic | 35.0% | |
| TAGTCTTCGGACCAAATTTA+AGG | + | chr4.3:68390308-68390327 | None:intergenic | 35.0% | |
| TCAAATTAGCCAATCCAAAC+AGG | + | chr4.3:68390335-68390354 | None:intergenic | 35.0% | |
| TGGAATTGTCGACAAATACT+TGG | + | chr4.3:68390099-68390118 | None:intergenic | 35.0% | |
| TGGATAACCGTTTAATGAAG+AGG | + | chr4.3:68387835-68387854 | None:intergenic | 35.0% | |
| ! | AGATTTGGTTTCTTAGGTGT+TGG | + | chr4.3:68386981-68387000 | None:intergenic | 35.0% |
| ! | ATAGGCTATCCAAGATTTTC+TGG | - | chr4.3:68388922-68388941 | MS.gene48692:intron | 35.0% |
| ! | CTAATTTAAGGTTGGAGCAA+TGG | - | chr4.3:68390212-68390231 | MS.gene48692:intron | 35.0% |
| ! | TAGGCTATCCAAGATTTTCT+GGG | - | chr4.3:68388923-68388942 | MS.gene48692:intron | 35.0% |
| ! | TCTTTAGAAGTCGCTAAAGT+TGG | - | chr4.3:68387128-68387147 | MS.gene48692:intron | 35.0% |
| ! | TGTTTTCTGATTGCAGTTTC+TGG | - | chr4.3:68390648-68390667 | MS.gene48692:CDS | 35.0% |
| !! | ACCTACAAGCTGATTTTGTT+GGG | - | chr4.3:68388863-68388882 | MS.gene48692:intron | 35.0% |
| !! | TACCTACAAGCTGATTTTGT+TGG | - | chr4.3:68388862-68388881 | MS.gene48692:intron | 35.0% |
| !! | TGAAAAAGGTGTTCTGATAG+AGG | - | chr4.3:68389451-68389470 | MS.gene48692:intron | 35.0% |
| !!! | GATTTTCTGGGTTTGCTATT+AGG | - | chr4.3:68388935-68388954 | MS.gene48692:intron | 35.0% |
| !!! | TATACATTGCTGTTTTGCAG+TGG | - | chr4.3:68389643-68389662 | MS.gene48692:intron | 35.0% |
| !!! | TTGTTGATGATCGTGTTTTG+TGG | + | chr4.3:68386928-68386947 | None:intergenic | 35.0% |
| AAAATCAGCTTGTAGGTAGG+GGG | + | chr4.3:68388860-68388879 | None:intergenic | 40.0% | |
| AAAGGAGCAATTGGAATACC+AGG | + | chr4.3:68387056-68387075 | None:intergenic | 40.0% | |
| ACAAAAACGAGACGAAGTCT+TGG | - | chr4.3:68389265-68389284 | MS.gene48692:intron | 40.0% | |
| ACCCAACAAAATCAGCTTGT+AGG | + | chr4.3:68388867-68388886 | None:intergenic | 40.0% | |
| ACCTTTAGCTAAGCTAAGCA+CGG | - | chr4.3:68388507-68388526 | MS.gene48692:intron | 40.0% | |
| ACGTTGCTAACGAATGTACT+TGG | - | chr4.3:68388318-68388337 | MS.gene48692:intron | 40.0% | |
| ATACAGAATTGGGTGTGAGA+GGG | - | chr4.3:68388980-68388999 | MS.gene48692:intron | 40.0% | |
| CAAAAACGAGACGAAGTCTT+GGG | - | chr4.3:68389266-68389285 | MS.gene48692:intron | 40.0% | |
| CAAAATCAGCTTGTAGGTAG+GGG | + | chr4.3:68388861-68388880 | None:intergenic | 40.0% | |
| CTAATGCTATTGAGGGAAAG+TGG | - | chr4.3:68390709-68390728 | MS.gene48692:CDS | 40.0% | |
| GAAACCAAATCTTCAGAACG+AGG | - | chr4.3:68386989-68387008 | MS.gene48692:intron | 40.0% | |
| GACTAAAAGCCTGTTTGGAT+TGG | - | chr4.3:68390323-68390342 | MS.gene48692:intron | 40.0% | |
| GCAAAGATGTTGTGATGCTT+CGG | - | chr4.3:68388033-68388052 | MS.gene48692:intron | 40.0% | |
| TATACAGAATTGGGTGTGAG+AGG | - | chr4.3:68388979-68388998 | MS.gene48692:intron | 40.0% | |
| TGCGAGACTGCAAAATTGTT+TGG | - | chr4.3:68387217-68387236 | MS.gene48692:intron | 40.0% | |
| TTATGCTGCTAGATACCACT+AGG | - | chr4.3:68388250-68388269 | MS.gene48692:CDS | 40.0% | |
| TTTCCTCAAAAGCCCTTTGA+GGG | + | chr4.3:68389220-68389239 | None:intergenic | 40.0% | |
| TTTCCTCCTCAAACATAGCA+AGG | - | chr4.3:68388130-68388149 | MS.gene48692:CDS | 40.0% | |
| ! | TAGTGTTTTCCCGATTCAAG+CGG | + | chr4.3:68388286-68388305 | None:intergenic | 40.0% |
| ! | TTTTCCTCAAAAGCCCTTTG+AGG | + | chr4.3:68389221-68389240 | None:intergenic | 40.0% |
| !! | ATGTGAATGAAGGCCTTGTT+TGG | + | chr4.3:68387855-68387874 | None:intergenic | 40.0% |
| !! | CCAAACAGGCTTTTAGTCTT+CGG | + | chr4.3:68390321-68390340 | None:intergenic | 40.0% |
| !! | GGCCTGAAAGTGTTATAAGT+AGG | - | chr4.3:68389034-68389053 | MS.gene48692:intron | 40.0% |
| !! | GTGCTGCTTACTGTATTACA+AGG | - | chr4.3:68390682-68390701 | MS.gene48692:CDS | 40.0% |
| !! | TGTTCCTCGTTCTGAAGATT+TGG | + | chr4.3:68386996-68387015 | None:intergenic | 40.0% |
| AAAACAGACCCCGCTTGAAT+CGG | - | chr4.3:68388273-68388292 | MS.gene48692:intron | 45.0% | |
| AACCTCCCAGCTTCATTTAG+TGG | + | chr4.3:68389410-68389429 | None:intergenic | 45.0% | |
| AAGACAAGGTCCTGATTGCT+TGG | + | chr4.3:68390119-68390138 | None:intergenic | 45.0% | |
| AAGCTATCTAGGAGAGCTTG+TGG | + | chr4.3:68390449-68390468 | None:intergenic | 45.0% | |
| ACAGCCCACTAAATGAAGCT+GGG | - | chr4.3:68389402-68389421 | MS.gene48692:intron | 45.0% | |
| ACCAGGAAGTTCAGTTTCGT+CGG | + | chr4.3:68387039-68387058 | None:intergenic | 45.0% | |
| ACCGTGCTTAGCTTAGCTAA+AGG | + | chr4.3:68388511-68388530 | None:intergenic | 45.0% | |
| ACCTCCCAGCTTCATTTAGT+GGG | + | chr4.3:68389409-68389428 | None:intergenic | 45.0% | |
| AGAACATTCAAACGGTTCGC+TGG | - | chr4.3:68389497-68389516 | MS.gene48692:CDS | 45.0% | |
| AGAAGTCGCTAAAGTTGGCA+AGG | - | chr4.3:68387133-68387152 | MS.gene48692:intron | 45.0% | |
| CAATCAGGACCTTGTCTTTG+TGG | - | chr4.3:68390121-68390140 | MS.gene48692:intron | 45.0% | |
| CCAACCTGATGACAAATGTC+AGG | + | chr4.3:68388173-68388192 | None:intergenic | 45.0% | |
| CCGAAGACTAAAAGCCTGTT+TGG | - | chr4.3:68390318-68390337 | MS.gene48692:intron | 45.0% | |
| CCTGACATTTGTCATCAGGT+TGG | - | chr4.3:68388170-68388189 | MS.gene48692:CDS | 45.0% | |
| CTCAAACATAGCAAGGATCC+TGG | - | chr4.3:68388137-68388156 | MS.gene48692:CDS | 45.0% | |
| GCGAACCGTTTGAATGTTCT+TGG | + | chr4.3:68389497-68389516 | None:intergenic | 45.0% | |
| GCTTAGCTTAGCTAAAGGTG+AGG | + | chr4.3:68388506-68388525 | None:intergenic | 45.0% | |
| GTCCCACATTGGATGAGATA+CGG | - | chr4.3:68389013-68389032 | MS.gene48692:intron | 45.0% | |
| GTCGACAATTCCAAGCAATC+AGG | - | chr4.3:68390106-68390125 | MS.gene48692:intron | 45.0% | |
| TGAAGCTGGGAGGTTGAAAA+TGG | - | chr4.3:68389415-68389434 | MS.gene48692:intron | 45.0% | |
| ! | AGAGTTGACGGGCAAATACT+GGG | + | chr4.3:68389744-68389763 | None:intergenic | 45.0% |
| ! | AGTGTTTTCCCGATTCAAGC+GGG | + | chr4.3:68388285-68388304 | None:intergenic | 45.0% |
| ! | CAGGATCCTTGCTATGTTTG+AGG | + | chr4.3:68388139-68388158 | None:intergenic | 45.0% |
| ! | GATCCTTGCTATGTTTGAGG+AGG | + | chr4.3:68388136-68388155 | None:intergenic | 45.0% |
| ! | GTGTGTTTAGAGTCCCACAT+TGG | - | chr4.3:68389002-68389021 | MS.gene48692:intron | 45.0% |
| ! | TGTCGGTTAATGCAGTCGAA+TGG | + | chr4.3:68388380-68388399 | None:intergenic | 45.0% |
| ! | TTACGGGGTTTTTGATCGTG+CGG | + | chr4.3:68389721-68389740 | None:intergenic | 45.0% |
| !! | ACCTGCTTTTCGAGAGTTGA+CGG | + | chr4.3:68389756-68389775 | None:intergenic | 45.0% |
| !! | TAGGGAGTACCACAAAGACA+AGG | + | chr4.3:68390133-68390152 | None:intergenic | 45.0% |
| !!! | CATAATTTAATTTTTTTTTT+TGG | - | chr4.3:68389586-68389605 | MS.gene48692:intron | 5.0% |
| AAACAGACCCCGCTTGAATC+GGG | - | chr4.3:68388274-68388293 | MS.gene48692:intron | 50.0% | |
| AAACGAGACGAAGTCTTGGG+TGG | - | chr4.3:68389269-68389288 | MS.gene48692:intron | 50.0% | |
| AAGGTTGGAGCAATGGCACA+TGG | - | chr4.3:68390219-68390238 | MS.gene48692:intron | 50.0% | |
| ACCGACGAAACTGAACTTCC+TGG | - | chr4.3:68387035-68387054 | MS.gene48692:intron | 50.0% | |
| ACGGGCAAATACTGGGTTAC+GGG | + | chr4.3:68389737-68389756 | None:intergenic | 50.0% | |
| AGGCCGTATCTCATCCAATG+TGG | + | chr4.3:68389019-68389038 | None:intergenic | 50.0% | |
| AGGTTGGAGCAATGGCACAT+GGG | - | chr4.3:68390220-68390239 | MS.gene48692:intron | 50.0% | |
| ATGTCAGGCCTGTAATGACC+AGG | + | chr4.3:68388158-68388177 | None:intergenic | 50.0% | |
| ATTGCTGGCATCTCCCTCAA+AGG | - | chr4.3:68389204-68389223 | MS.gene48692:intron | 50.0% | |
| CAGGCCTGACATTTGTCATC+AGG | - | chr4.3:68388166-68388185 | MS.gene48692:CDS | 50.0% | |
| CTACCATGGCCTGATTGGAA+GGG | - | chr4.3:68388605-68388624 | MS.gene48692:intron | 50.0% | |
| GACAGCCCACTAAATGAAGC+TGG | - | chr4.3:68389401-68389420 | MS.gene48692:intron | 50.0% | |
| GACGGGCAAATACTGGGTTA+CGG | + | chr4.3:68389738-68389757 | None:intergenic | 50.0% | |
| GCAAGGATCCTGGTCATTAC+AGG | - | chr4.3:68388147-68388166 | MS.gene48692:CDS | 50.0% | |
| GGCCGTATCTCATCCAATGT+GGG | + | chr4.3:68389018-68389037 | None:intergenic | 50.0% | |
| TATCTTGAGCGTGATCCGAG+TGG | + | chr4.3:68388961-68388980 | None:intergenic | 50.0% | |
| TCTTGTTCCACAGCCTACCA+TGG | - | chr4.3:68388591-68388610 | MS.gene48692:intron | 50.0% | |
| TTGCTGGCATCTCCCTCAAA+GGG | - | chr4.3:68389205-68389224 | MS.gene48692:intron | 50.0% | |
| ! | GAGAGTTGACGGGCAAATAC+TGG | + | chr4.3:68389745-68389764 | None:intergenic | 50.0% |
| ! | GTACATTCTTTGAGGGGGAG+AGG | + | chr4.3:68388633-68388652 | None:intergenic | 50.0% |
| ! | GTGTTTTCCCGATTCAAGCG+GGG | + | chr4.3:68388284-68388303 | None:intergenic | 50.0% |
| ! | GTTTCGTCGGTTGCTTCTGT+TGG | + | chr4.3:68387026-68387045 | None:intergenic | 50.0% |
| ! | TCTCCCTCAAAGGGCTTTTG+AGG | - | chr4.3:68389214-68389233 | MS.gene48692:intron | 50.0% |
| !! | CCTGCTTTTCGAGAGTTGAC+GGG | + | chr4.3:68389755-68389774 | None:intergenic | 50.0% |
| !! | GGGTTTGCTATTAGGCCACT+CGG | - | chr4.3:68388943-68388962 | MS.gene48692:intron | 50.0% |
| AATCAGGCCATGGTAGGCTG+TGG | + | chr4.3:68388601-68388620 | None:intergenic | 55.0% | |
| ACAGCCTACCATGGCCTGAT+TGG | - | chr4.3:68388600-68388619 | MS.gene48692:intron | 55.0% | |
| CCCGTCAACTCTCGAAAAGC+AGG | - | chr4.3:68389752-68389771 | MS.gene48692:intron | 55.0% | |
| CCTACCATGGCCTGATTGGA+AGG | - | chr4.3:68388604-68388623 | MS.gene48692:intron | 55.0% | |
| CCTTCCAATCAGGCCATGGT+AGG | + | chr4.3:68388607-68388626 | None:intergenic | 55.0% | |
| CGGGCAAATACTGGGTTACG+GGG | + | chr4.3:68389736-68389755 | None:intergenic | 55.0% | |
| GAACCCTTCCAATCAGGCCA+TGG | + | chr4.3:68388611-68388630 | None:intergenic | 55.0% | |
| GCCCACTAAATGAAGCTGGG+AGG | - | chr4.3:68389405-68389424 | MS.gene48692:intron | 55.0% | |
| GGAGAGGAACCCTTCCAATC+AGG | + | chr4.3:68388617-68388636 | None:intergenic | 55.0% | |
| TGGAGCAATGGCACATGGGA+AGG | - | chr4.3:68390224-68390243 | MS.gene48692:intron | 55.0% | |
| ! | AGCGGGGTCTGTTTTCCTAG+TGG | + | chr4.3:68388268-68388287 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 68386915 | 68390740 | 68386915 | ID=MS.gene48692 |
| chr4.3 | mRNA | 68386915 | 68390740 | 68386915 | ID=MS.gene48692.t1;Parent=MS.gene48692 |
| chr4.3 | exon | 68390501 | 68390740 | 68390501 | ID=MS.gene48692.t1.exon1;Parent=MS.gene48692.t1 |
| chr4.3 | CDS | 68390501 | 68390740 | 68390501 | ID=cds.MS.gene48692.t1;Parent=MS.gene48692.t1 |
| chr4.3 | exon | 68389468 | 68389560 | 68389468 | ID=MS.gene48692.t1.exon2;Parent=MS.gene48692.t1 |
| chr4.3 | CDS | 68389468 | 68389560 | 68389468 | ID=cds.MS.gene48692.t1;Parent=MS.gene48692.t1 |
| chr4.3 | exon | 68388128 | 68388272 | 68388128 | ID=MS.gene48692.t1.exon3;Parent=MS.gene48692.t1 |
| chr4.3 | CDS | 68388128 | 68388272 | 68388128 | ID=cds.MS.gene48692.t1;Parent=MS.gene48692.t1 |
| chr4.3 | exon | 68387882 | 68387992 | 68387882 | ID=MS.gene48692.t1.exon4;Parent=MS.gene48692.t1 |
| chr4.3 | CDS | 68387882 | 68387992 | 68387882 | ID=cds.MS.gene48692.t1;Parent=MS.gene48692.t1 |
| chr4.3 | exon | 68387513 | 68387595 | 68387513 | ID=MS.gene48692.t1.exon5;Parent=MS.gene48692.t1 |
| chr4.3 | CDS | 68387513 | 68387595 | 68387513 | ID=cds.MS.gene48692.t1;Parent=MS.gene48692.t1 |
| chr4.3 | exon | 68387376 | 68387433 | 68387376 | ID=MS.gene48692.t1.exon6;Parent=MS.gene48692.t1 |
| chr4.3 | CDS | 68387376 | 68387433 | 68387376 | ID=cds.MS.gene48692.t1;Parent=MS.gene48692.t1 |
| chr4.3 | exon | 68386915 | 68386991 | 68386915 | ID=MS.gene48692.t1.exon7;Parent=MS.gene48692.t1 |
| chr4.3 | CDS | 68386915 | 68386991 | 68386915 | ID=cds.MS.gene48692.t1;Parent=MS.gene48692.t1 |
| Gene Sequence |
| Protein sequence |
