AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene49332

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene49332.t1 MTR_1g070385 96.259 294 11 0 1 294 1 294 0.0 585
MS.gene49332.t1 MTR_1g097840 43.556 225 127 0 57 281 69 293 4.10e-56 183
MS.gene49332.t1 MTR_7g010650 37.959 245 144 2 47 284 15 258 1.40e-53 176
MS.gene49332.t1 MTR_2g017590 41.860 215 124 1 62 275 36 250 5.12e-53 174
MS.gene49332.t1 MTR_2g104940 40.175 229 137 0 60 288 78 306 1.14e-52 174
MS.gene49332.t1 MTR_2g017620 42.396 217 124 1 60 275 22 238 2.03e-52 172
MS.gene49332.t1 MTR_2g017620 42.396 217 124 1 60 275 36 252 2.31e-52 172
MS.gene49332.t1 MTR_4g006730 40.909 220 130 0 60 279 73 292 4.33e-50 168
MS.gene49332.t1 MTR_2g017660 39.111 225 132 2 62 285 39 259 4.99e-50 167
MS.gene49332.t1 MTR_8g087720 38.073 218 134 1 59 275 35 252 7.11e-50 166
MS.gene49332.t1 MTR_8g087710 39.819 221 132 1 56 275 33 253 6.55e-49 164
MS.gene49332.t1 MTR_4g084880 36.866 217 134 2 62 275 35 251 2.86e-48 162
MS.gene49332.t1 MTR_2g017610 39.070 215 130 1 62 275 38 252 7.10e-48 161
MS.gene49332.t1 MTR_2g017570 38.605 215 131 1 62 275 38 252 1.28e-47 160
MS.gene49332.t1 MTR_5g079570 38.140 215 131 2 58 271 36 249 3.33e-45 154
MS.gene49332.t1 MTR_4g006630 42.473 186 107 0 94 279 20 205 4.14e-45 152
MS.gene49332.t1 MTR_4g006730 42.473 186 107 0 94 279 20 205 6.03e-45 152
MS.gene49332.t1 MTR_5g063930 36.681 229 137 4 62 285 37 262 3.21e-44 151
MS.gene49332.t1 MTR_2g017620 43.860 171 95 1 106 275 1 171 4.46e-44 149
MS.gene49332.t1 MTR_3g008920 38.117 223 136 2 50 271 14 235 7.15e-44 150
MS.gene49332.t1 MTR_1g097840 42.857 168 96 0 57 224 69 236 7.67e-32 119
MS.gene49332.t1 MTR_4g006730 36.410 195 112 1 60 254 73 255 4.72e-30 114
MS.gene49332.t1 MTR_7g010650 35.758 165 99 1 47 204 15 179 3.67e-28 107
MS.gene49332.t1 MTR_8g087720 34.940 166 107 1 60 224 36 201 1.02e-27 106
MS.gene49332.t1 MTR_8g087720 35.616 146 93 1 60 204 36 181 2.27e-23 95.1
MS.gene49332.t1 MTR_2g101370 32.353 238 143 8 54 276 8 242 1.53e-22 94.4
MS.gene49332.t1 MTR_8g013680 32.661 248 143 9 54 284 7 247 3.74e-22 93.2
MS.gene49332.t1 MTR_1g006590 31.193 218 143 5 59 270 16 232 2.51e-20 88.2
MS.gene49332.t1 MTR_7g103030 30.837 227 148 5 65 283 24 249 3.29e-19 85.1
MS.gene49332.t1 MTR_1g077540 26.695 236 162 4 62 289 21 253 9.59e-19 84.0
MS.gene49332.t1 MTR_6g069040 28.326 233 157 5 62 284 21 253 1.25e-18 83.6
MS.gene49332.t1 MTR_1g006490 30.769 221 144 6 62 275 19 237 1.39e-18 83.2
MS.gene49332.t1 MTR_5g012810 38.065 155 89 4 114 263 76 228 3.08e-18 82.4
MS.gene49332.t1 MTR_4g063090 32.278 158 104 2 114 268 78 235 6.33e-17 79.0
MS.gene49332.t1 MTR_8g088310 76.087 46 11 0 159 204 83 128 1.48e-15 72.4
MS.gene49332.t1 MTR_3g070210 27.193 228 141 6 59 265 52 275 1.18e-14 73.2
MS.gene49332.t1 MTR_2g060360 27.876 226 154 5 59 276 16 240 1.19e-14 72.4
MS.gene49332.t1 MTR_4g006650 36.232 138 79 1 66 203 8 136 1.47e-14 73.2
MS.gene49332.t1 MTR_1g115405 27.313 227 156 5 62 280 21 246 2.27e-14 71.6
MS.gene49332.t1 MTR_2g094270 26.724 232 147 5 62 270 40 271 2.96e-14 72.0
MS.gene49332.t1 MTR_3g118010 25.847 236 143 7 59 270 34 261 5.02e-14 71.2
MS.gene49332.t1 MTR_7g023350 27.928 222 152 4 62 275 21 242 6.39e-14 70.5
MS.gene49332.t1 MTR_5g082070 26.667 225 146 6 59 265 52 275 2.62e-13 69.3
MS.gene49332.t1 MTR_8g098375 26.222 225 147 6 59 265 49 272 2.75e-13 68.9
MS.gene49332.t1 MTR_5g010150 26.222 225 147 6 59 265 49 272 8.19e-13 67.8
MS.gene49332.t1 MTR_3g070210 26.238 202 127 5 59 242 52 249 8.22e-13 67.8
MS.gene49332.t1 MTR_7g101190 25.641 234 152 6 59 270 36 269 2.65e-12 66.2
MS.gene49332.t1 MTR_4g059390 25.210 238 148 6 59 270 36 269 3.18e-12 65.9
MS.gene49332.t1 MTR_4g415300 26.068 234 135 7 59 265 53 275 3.45e-12 65.9
MS.gene49332.t1 MTR_2g094270 27.363 201 126 4 62 242 40 240 1.27e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene49332.t1 AT3G06100 55.686 255 106 3 27 277 11 262 1.85e-92 275
MS.gene49332.t1 AT3G06100 60.280 214 84 1 65 277 1 214 4.53e-87 260
MS.gene49332.t1 AT4G10380 41.778 225 131 0 57 281 73 297 7.43e-55 180
MS.gene49332.t1 AT4G18910 39.676 247 136 2 37 275 32 273 7.79e-55 180
MS.gene49332.t1 AT5G37820 39.535 215 129 1 62 275 43 257 1.17e-52 174
MS.gene49332.t1 AT5G37820 39.535 215 129 1 62 275 79 293 1.47e-52 174
MS.gene49332.t1 AT4G19030 39.474 228 130 1 56 275 49 276 2.31e-52 173
MS.gene49332.t1 AT1G80760 40.909 220 130 0 57 276 75 294 1.10e-51 172
MS.gene49332.t1 AT5G37810 37.788 217 134 1 60 275 41 257 2.57e-50 168
MS.gene49332.t1 AT1G31885 37.759 241 139 2 56 285 37 277 2.59e-48 164
MS.gene49332.t1 AT3G06100 53.901 141 64 1 138 277 41 181 2.52e-47 157
MS.gene49332.t1 AT2G34390 38.117 223 129 2 56 270 42 263 2.10e-44 152
MS.gene49332.t1 AT2G34390 38.636 220 126 2 59 270 3 221 1.40e-43 149
MS.gene49332.t1 AT1G31885 38.117 223 127 2 74 285 1 223 1.67e-43 150
MS.gene49332.t1 AT4G18910 36.224 196 112 2 37 224 32 222 3.21e-33 122
MS.gene49332.t1 AT4G19030 36.257 171 101 1 60 222 53 223 1.42e-30 115
MS.gene49332.t1 AT4G19030 35.948 153 90 1 60 204 53 205 1.32e-26 104
MS.gene49332.t1 AT2G34390 31.638 177 112 2 56 224 42 217 7.30e-23 94.4
MS.gene49332.t1 AT1G73190 27.753 227 151 3 62 275 24 250 4.70e-20 87.8
MS.gene49332.t1 AT4G17340 38.462 156 88 4 114 263 76 229 5.53e-20 87.4
MS.gene49332.t1 AT2G34390 32.278 158 98 2 56 205 42 198 5.72e-20 86.7
MS.gene49332.t1 AT2G29870 46.237 93 50 0 178 270 22 114 1.06e-19 83.6
MS.gene49332.t1 AT3G26520 31.224 237 148 8 59 283 19 252 2.82e-19 85.5
MS.gene49332.t1 AT5G47450 31.925 213 132 6 62 263 19 229 3.89e-19 85.1
MS.gene49332.t1 AT1G17810 31.875 160 106 2 114 270 86 245 4.20e-19 85.1
MS.gene49332.t1 AT3G16240 30.603 232 152 5 54 276 11 242 5.95e-19 84.3
MS.gene49332.t1 AT2G36830 30.303 231 151 6 62 283 21 250 1.01e-18 84.0
MS.gene49332.t1 AT2G25810 33.796 216 120 8 62 263 19 225 2.49e-18 82.8
MS.gene49332.t1 AT2G16850 25.957 235 144 6 59 270 33 260 1.61e-15 75.5
MS.gene49332.t1 AT4G35100 26.582 237 140 9 59 270 35 262 6.84e-14 70.9
MS.gene49332.t1 AT4G35100 26.582 237 140 9 59 270 35 262 6.84e-14 70.9
MS.gene49332.t1 AT4G01470 30.864 162 101 4 114 268 78 235 9.06e-14 70.1
MS.gene49332.t1 AT3G53420 26.891 238 144 6 59 270 36 269 9.52e-14 70.5
MS.gene49332.t1 AT3G53420 26.891 238 144 6 59 270 36 269 9.52e-14 70.5
MS.gene49332.t1 AT3G54820 27.615 239 141 9 59 270 35 268 1.76e-13 69.7
MS.gene49332.t1 AT5G60660 26.809 235 142 7 62 270 39 269 2.49e-13 69.3
MS.gene49332.t1 AT3G47440 28.085 235 156 4 56 279 17 249 3.30e-13 68.6
MS.gene49332.t1 AT4G23400 24.373 279 181 8 7 265 4 272 1.33e-12 67.0
MS.gene49332.t1 AT1G31885 37.143 105 65 1 56 159 37 141 1.51e-12 64.3
MS.gene49332.t1 AT1G01620 26.293 232 147 7 59 270 49 276 4.26e-12 65.9
MS.gene49332.t1 AT4G00430 27.313 227 141 7 59 265 50 272 7.75e-12 65.1
MS.gene49332.t1 AT2G37170 25.106 235 146 6 62 270 37 267 1.58e-11 63.9
MS.gene49332.t1 AT2G37180 24.893 233 149 6 62 270 37 267 1.64e-11 63.9
MS.gene49332.t1 AT3G61430 25.877 228 143 7 59 265 49 271 1.69e-11 63.9
MS.gene49332.t1 AT3G61430 25.877 228 143 7 59 265 49 271 1.69e-11 63.9
MS.gene49332.t1 AT2G37170 25.106 235 146 6 62 270 80 310 1.96e-11 63.9
MS.gene49332.t1 AT2G45960 26.316 228 142 7 59 265 49 271 2.10e-11 63.5

Find 71 sgRNAs with CRISPR-Local

Find 122 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTGTGCTATTATGTAAAT+TGG 0.196563 1.1:-52882451 None:intergenic
AAAGGCCAACTGCACCATTT+TGG 0.259769 1.1:-52882003 None:intergenic
CATGGAAATTTAAGAACATT+TGG 0.291328 1.1:+52883297 MS.gene49332:CDS
GGGCTTGCTGTGCTAATTAC+AGG 0.294593 1.1:+52882785 MS.gene49332:CDS
ATCAATCCATCCATATCTTT+TGG 0.297657 1.1:+52881737 MS.gene49332:CDS
AAATGGTGCAGTTGGCCTTT+TGG 0.300610 1.1:+52882006 MS.gene49332:CDS
AAGGGTGTAACTCTGCCTTC+TGG 0.313532 1.1:+52882554 MS.gene49332:CDS
GTGCAGGTGGGACATTTATC+TGG 0.315213 1.1:+52882740 MS.gene49332:intron
GACCAACTTCACTAGTGTTT+GGG 0.319934 1.1:-52883406 None:intergenic
TTTGTTGCTGGAATTGCAAT+TGG 0.328084 1.1:+52882764 MS.gene49332:CDS
ACAAACAATTGGTTCTTTGA+TGG 0.342849 1.1:+52882468 MS.gene49332:CDS
TGACCAACTTCACTAGTGTT+TGG 0.354249 1.1:-52883407 None:intergenic
TCTTTGATGGCAACATATAT+TGG 0.360684 1.1:+52882481 MS.gene49332:CDS
CCTGCCACAGCTCCTCCACT+TGG 0.364123 1.1:-52883335 None:intergenic
ATGTACTAACTTGCACAAAA+AGG 0.373003 1.1:-52883437 None:intergenic
AATTTCCATGACACAATTGC+TGG 0.374440 1.1:-52883284 None:intergenic
GCACCAAGTAGTGGTTTGTC+TGG 0.377145 1.1:+52881681 MS.gene49332:CDS
GCAAGCACACAACACCAAAA+TGG 0.381298 1.1:+52881989 MS.gene49332:CDS
GGTGCATAATTTGAACCTTC+CGG 0.382873 1.1:-52881663 None:intergenic
TTCATTGATCCACCTGATAC+AGG 0.386394 1.1:-52883242 None:intergenic
ACAATAGCCTTTGCAACAAT+TGG 0.390249 1.1:+52882115 MS.gene49332:CDS
TATATTGGTAGCCTTGTCTA+TGG 0.405955 1.1:+52882496 MS.gene49332:CDS
CTGCCACAGCTCCTCCACTT+GGG 0.408595 1.1:-52883334 None:intergenic
AGGGTGTAACTCTGCCTTCT+GGG 0.416790 1.1:+52882555 MS.gene49332:CDS
TACATAATAGCACAAACAAT+TGG 0.418691 1.1:+52882457 MS.gene49332:CDS
CAACAATTGGTCACTTTCCA+TGG 0.426818 1.1:+52882128 MS.gene49332:CDS
GCAAAGGCTATTGTGATAGC+TGG 0.429353 1.1:-52882106 None:intergenic
GCTGGACCAAGTGATCTTGC+TGG 0.429509 1.1:-52883266 None:intergenic
CTAGGTAATGGCAGAGGTGG+TGG 0.457154 1.1:+52881928 MS.gene49332:intron
CCAAGTGGAGGAGCTGTGGC+AGG 0.470037 1.1:+52883335 MS.gene49332:CDS
CTGTAGCTGCATACTCCAAA+AGG 0.475436 1.1:-52882021 None:intergenic
TTGTTGCTGGAATTGCAATT+GGG 0.478564 1.1:+52882765 MS.gene49332:CDS
TTGGAGTATGCAGCTACAGC+AGG 0.482843 1.1:+52882025 MS.gene49332:CDS
CACCAAGTAGTGGTTTGTCT+GGG 0.484402 1.1:+52881682 MS.gene49332:CDS
TCCCCAGACAAACCACTACT+TGG 0.487928 1.1:-52881684 None:intergenic
TGCCACAGCTCCTCCACTTG+GGG 0.492390 1.1:-52883333 None:intergenic
TAACTCTGCCTTCTGGGTGG+AGG 0.509744 1.1:+52882561 MS.gene49332:CDS
TTACCATGCGAGCGAAATTG+AGG 0.510690 1.1:-52881800 None:intergenic
CGACCTCAATTTCGCTCGCA+TGG 0.519494 1.1:+52881797 MS.gene49332:CDS
TCTGGGGATGATAAAGAGCT+TGG 0.521216 1.1:+52881699 MS.gene49332:CDS
TCCCCAAACACTAGTGAAGT+TGG 0.525887 1.1:+52883404 MS.gene49332:CDS
GTTGTGATAATCTTCTCTAT+AGG 0.527057 1.1:+52882058 MS.gene49332:CDS
TATGTAACAACCTTGGACCA+TGG 0.527508 1.1:-52882145 None:intergenic
CAACACCAAAATGGTGCAGT+TGG 0.532462 1.1:+52881998 MS.gene49332:CDS
TGTTGCAGCCCTGTATCAGG+TGG 0.533926 1.1:+52883233 MS.gene49332:intron
TGGTCACTTTCCATGGTCCA+AGG 0.541664 1.1:+52882135 MS.gene49332:CDS
TCAAATTATGCACCAAGTAG+TGG 0.544288 1.1:+52881672 MS.gene49332:CDS
CAAAGGCTATTGTGATAGCT+GGG 0.546101 1.1:-52882105 None:intergenic
AGCCCCAAGTGGAGGAGCTG+TGG 0.566367 1.1:+52883331 MS.gene49332:CDS
TGCAATAACCTCCACCCAGA+AGG 0.568635 1.1:-52882569 None:intergenic
TAGGTAATGGCAGAGGTGGT+GGG 0.568752 1.1:+52881929 MS.gene49332:intron
AGAAGGCAGAGTTACACCCT+TGG 0.582526 1.1:-52882552 None:intergenic
GGCTTGCTGTGCTAATTACA+GGG 0.585330 1.1:+52882786 MS.gene49332:CDS
ATGAATCCAGCAAGATCACT+TGG 0.586915 1.1:+52883260 MS.gene49332:CDS
TCATTGATCCACCTGATACA+GGG 0.593857 1.1:-52883241 None:intergenic
AAAGTGACCAATTGTTGCAA+AGG 0.597190 1.1:-52882122 None:intergenic
ATGATGACTCAACCACTCCA+AGG 0.603566 1.1:+52882535 MS.gene49332:CDS
TTGGTCCAGCAATTGTGTCA+TGG 0.604068 1.1:+52883279 MS.gene49332:CDS
ACCAACTTCACTAGTGTTTG+GGG 0.606040 1.1:-52883405 None:intergenic
TGTTTGGGGAGCTACAATGT+TGG 0.607612 1.1:-52883391 None:intergenic
GTGTAACTCTGCCTTCTGGG+TGG 0.612167 1.1:+52882558 MS.gene49332:CDS
AATGTTGGTCTTTAAGACGT+AGG 0.629203 1.1:-52883376 None:intergenic
TGATGACTCAACCACTCCAA+GGG 0.629504 1.1:+52882536 MS.gene49332:CDS
TATCTAGGTAATGGCAGAGG+TGG 0.629546 1.1:+52881925 MS.gene49332:intron
ATGTATCTAGGTAATGGCAG+AGG 0.632592 1.1:+52881922 MS.gene49332:intron
TGTCTATGGCATAAAATCAG+AGG 0.635801 1.1:+52882510 MS.gene49332:CDS
GCAGAGTTACACCCTTGGAG+TGG 0.641435 1.1:-52882547 None:intergenic
AAACAATCATCATCTCCGGA+AGG 0.645392 1.1:+52881648 MS.gene49332:CDS
TACATCTTAGCCCCAAGTGG+AGG 0.646124 1.1:+52883323 MS.gene49332:CDS
ATATACATCTTAGCCCCAAG+TGG 0.684115 1.1:+52883320 MS.gene49332:CDS
ACCAAGTAGTGGTTTGTCTG+GGG 0.700105 1.1:+52881683 MS.gene49332:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTGTAATAAAAATGTTATA+TGG + chr1.1:52883142-52883161 MS.gene49332:intron 10.0%
!! AAAAATTAAAAATATTGTGC+AGG + chr1.1:52882724-52882743 MS.gene49332:intron 15.0%
!!! AAATAGTATTGAAATTTGAT+TGG + chr1.1:52882863-52882882 MS.gene49332:intron 15.0%
!!! ATTTTTAGCTAGTAAAAAAA+TGG - chr1.1:52882710-52882729 None:intergenic 15.0%
!!! TTTGTATAATTTTTTTTCTC+CGG + chr1.1:52882246-52882265 MS.gene49332:intron 15.0%
!! ACTATTGACAAAATAATCAA+GGG - chr1.1:52881868-52881887 None:intergenic 20.0%
!! CTGTTTAAGAAACAATAAAA+GGG - chr1.1:52882428-52882447 None:intergenic 20.0%
!! CTTAACTTTCTCTTATAAAT+AGG + chr1.1:52882352-52882371 MS.gene49332:intron 20.0%
!! TACATAAATAACTACTTAGT+CGG + chr1.1:52882162-52882181 MS.gene49332:intron 20.0%
!! TCTATTTATAAGAGAAAGTT+TGG + chr1.1:52882270-52882289 MS.gene49332:intron 20.0%
!! TTTGATCACTTTGATATTTA+TGG + chr1.1:52882825-52882844 MS.gene49332:intron 20.0%
!!! AACATTCATCATTATGTTTT+TGG + chr1.1:52882591-52882610 MS.gene49332:CDS 20.0%
! AATAAGTATAGCATTCTAAG+TGG - chr1.1:52883067-52883086 None:intergenic 25.0%
! AATTAAAAATATTGTGCAGG+TGG + chr1.1:52882727-52882746 MS.gene49332:intron 25.0%
! AGTTATTTATGTAACAACCT+TGG - chr1.1:52882155-52882174 None:intergenic 25.0%
! ATTAAAAATATTGTGCAGGT+GGG + chr1.1:52882728-52882747 MS.gene49332:intron 25.0%
! CAATCAGTAAGTACTAATTA+AGG + chr1.1:52882637-52882656 MS.gene49332:intron 25.0%
! CATGGAAATTTAAGAACATT+TGG + chr1.1:52883297-52883316 MS.gene49332:CDS 25.0%
! CCTGTTTAAGAAACAATAAA+AGG - chr1.1:52882429-52882448 None:intergenic 25.0%
! CTTTCTCTTATAAATAGAAC+CGG - chr1.1:52882268-52882287 None:intergenic 25.0%
! GACTATTGACAAAATAATCA+AGG - chr1.1:52881869-52881888 None:intergenic 25.0%
! GGAATCATTGCTAATTATTA+AGG - chr1.1:52882689-52882708 None:intergenic 25.0%
! TACATAATAGCACAAACAAT+TGG + chr1.1:52882457-52882476 MS.gene49332:CDS 25.0%
! TTGATTTAATTAGTACACTC+TGG - chr1.1:52882379-52882398 None:intergenic 25.0%
!! ATATTGATGTTTTGTGTATG+TGG + chr1.1:52881959-52881978 MS.gene49332:CDS 25.0%
!! GTTTGTGCTATTATGTAAAT+TGG - chr1.1:52882454-52882473 None:intergenic 25.0%
!!! AGTTATTTTGCTATGTATCT+AGG + chr1.1:52881910-52881929 MS.gene49332:intron 25.0%
!!! CCTTTTATTGTTTCTTAAAC+AGG + chr1.1:52882426-52882445 MS.gene49332:intron 25.0%
GTTGTGATAATCTTCTCTAT+AGG + chr1.1:52882058-52882077 MS.gene49332:CDS 30.0%
TCAACAAAACTTGATGTATC+TGG + chr1.1:52882293-52882312 MS.gene49332:intron 30.0%
TGAAAAACAATCATCATCTC+CGG + chr1.1:52881644-52881663 MS.gene49332:CDS 30.0%
! ACAAACAATTGGTTCTTTGA+TGG + chr1.1:52882468-52882487 MS.gene49332:CDS 30.0%
! ACTTGACAATATTACTGGTT+GGG - chr1.1:52883026-52883045 None:intergenic 30.0%
! ATCAATCCATCCATATCTTT+TGG + chr1.1:52881737-52881756 MS.gene49332:CDS 30.0%
! TAACTTGCACAAAAAGGTAT+TGG - chr1.1:52883434-52883453 None:intergenic 30.0%
! TCTTTGATGGCAACATATAT+TGG + chr1.1:52882481-52882500 MS.gene49332:CDS 30.0%
! TTTGCTATGTATCTAGGTAA+TGG + chr1.1:52881916-52881935 MS.gene49332:intron 30.0%
! TTTTAGCCAAAAGATATGGA+TGG - chr1.1:52881746-52881765 None:intergenic 30.0%
!!! GTGTTTTTAGCCAAAAGATA+TGG - chr1.1:52881750-52881769 None:intergenic 30.0%
AAAGTGACCAATTGTTGCAA+AGG - chr1.1:52882125-52882144 None:intergenic 35.0%
AATTTCCATGACACAATTGC+TGG - chr1.1:52883287-52883306 None:intergenic 35.0%
ACAATAGCCTTTGCAACAAT+TGG + chr1.1:52882115-52882134 MS.gene49332:CDS 35.0%
AGTATAGCATTCTAAGTGGT+CGG - chr1.1:52883063-52883082 None:intergenic 35.0%
CACTTGACAATATTACTGGT+TGG - chr1.1:52883027-52883046 None:intergenic 35.0%
TCAAATTATGCACCAAGTAG+TGG + chr1.1:52881672-52881691 MS.gene49332:CDS 35.0%
TGTCTATGGCATAAAATCAG+AGG + chr1.1:52882510-52882529 MS.gene49332:CDS 35.0%
TTGTTGCTGGAATTGCAATT+GGG + chr1.1:52882765-52882784 MS.gene49332:CDS 35.0%
TTTGTTGCTGGAATTGCAAT+TGG + chr1.1:52882764-52882783 MS.gene49332:CDS 35.0%
! AAACACAAAACGAAGAGTGT+TGG - chr1.1:52882962-52882981 None:intergenic 35.0%
! AATATTACTGGTTGGGTTGT+CGG - chr1.1:52883019-52883038 None:intergenic 35.0%
! CTGATTTTATGCCATAGACA+AGG - chr1.1:52882510-52882529 None:intergenic 35.0%
!! AAACGAAGAGTGTTGGAATA+TGG - chr1.1:52882955-52882974 None:intergenic 35.0%
!! AATGTTGGTCTTTAAGACGT+AGG - chr1.1:52883379-52883398 None:intergenic 35.0%
!! GAAATTGAGGTCGATTTTGT+TGG - chr1.1:52881790-52881809 None:intergenic 35.0%
!! TATATTGGTAGCCTTGTCTA+TGG + chr1.1:52882496-52882515 MS.gene49332:CDS 35.0%
!!! CATTTATCTGGTTTTGTTGC+TGG + chr1.1:52882752-52882771 MS.gene49332:CDS 35.0%
AAACAATCATCATCTCCGGA+AGG + chr1.1:52881648-52881667 MS.gene49332:CDS 40.0%
ACCAACTTCACTAGTGTTTG+GGG - chr1.1:52883408-52883427 None:intergenic 40.0%
ATATACATCTTAGCCCCAAG+TGG + chr1.1:52883320-52883339 MS.gene49332:CDS 40.0%
ATGAATCCAGCAAGATCACT+TGG + chr1.1:52883260-52883279 MS.gene49332:CDS 40.0%
CAAAGGCTATTGTGATAGCT+GGG - chr1.1:52882108-52882127 None:intergenic 40.0%
GACCAACTTCACTAGTGTTT+GGG - chr1.1:52883409-52883428 None:intergenic 40.0%
GGTGCATAATTTGAACCTTC+CGG - chr1.1:52881666-52881685 None:intergenic 40.0%
TATGTAACAACCTTGGACCA+TGG - chr1.1:52882148-52882167 None:intergenic 40.0%
TCATTGATCCACCTGATACA+GGG - chr1.1:52883244-52883263 None:intergenic 40.0%
TGACCAACTTCACTAGTGTT+TGG - chr1.1:52883410-52883429 None:intergenic 40.0%
TTCATTGATCCACCTGATAC+AGG - chr1.1:52883245-52883264 None:intergenic 40.0%
! ATGTATCTAGGTAATGGCAG+AGG + chr1.1:52881922-52881941 MS.gene49332:intron 40.0%
! CAACAATTGGTCACTTTCCA+TGG + chr1.1:52882128-52882147 MS.gene49332:CDS 40.0%
ATGATGACTCAACCACTCCA+AGG + chr1.1:52882535-52882554 MS.gene49332:CDS 45.0%
CAACACCAAAATGGTGCAGT+TGG + chr1.1:52881998-52882017 MS.gene49332:CDS 45.0%
CTGTAGCTGCATACTCCAAA+AGG - chr1.1:52882024-52882043 None:intergenic 45.0%
GAAATTCACTCTGACCGTCA+TGG + chr1.1:52882984-52883003 MS.gene49332:intron 45.0%
GCAAAGGCTATTGTGATAGC+TGG - chr1.1:52882109-52882128 None:intergenic 45.0%
GCAAGCACACAACACCAAAA+TGG + chr1.1:52881989-52882008 MS.gene49332:CDS 45.0%
GGAATATGGCATCACAACGA+TGG - chr1.1:52882941-52882960 None:intergenic 45.0%
TCCCCAAACACTAGTGAAGT+TGG + chr1.1:52883404-52883423 MS.gene49332:CDS 45.0%
TCTGGGGATGATAAAGAGCT+TGG + chr1.1:52881699-52881718 MS.gene49332:CDS 45.0%
TGATGACTCAACCACTCCAA+GGG + chr1.1:52882536-52882555 MS.gene49332:CDS 45.0%
TGCTGTGCTAATTACAGGGT+GGG + chr1.1:52882790-52882809 MS.gene49332:intron 45.0%
TGTTTGGGGAGCTACAATGT+TGG - chr1.1:52883394-52883413 None:intergenic 45.0%
TTACCATGCGAGCGAAATTG+AGG - chr1.1:52881803-52881822 None:intergenic 45.0%
TTGCTGTGCTAATTACAGGG+TGG + chr1.1:52882789-52882808 MS.gene49332:intron 45.0%
TTGGTCCAGCAATTGTGTCA+TGG + chr1.1:52883279-52883298 MS.gene49332:CDS 45.0%
! AAAGGCCAACTGCACCATTT+TGG - chr1.1:52882006-52882025 None:intergenic 45.0%
! ACCAAGTAGTGGTTTGTCTG+GGG + chr1.1:52881683-52881702 MS.gene49332:CDS 45.0%
! CACCAAGTAGTGGTTTGTCT+GGG + chr1.1:52881682-52881701 MS.gene49332:CDS 45.0%
! GGGGCACTTGACAATATTAC+TGG - chr1.1:52883031-52883050 None:intergenic 45.0%
! TATCTAGGTAATGGCAGAGG+TGG + chr1.1:52881925-52881944 MS.gene49332:intron 45.0%
! TTTTGTTGCAGCCCTGTATC+AGG + chr1.1:52883230-52883249 MS.gene49332:intron 45.0%
!! GGCTTGCTGTGCTAATTACA+GGG + chr1.1:52882786-52882805 MS.gene49332:CDS 45.0%
!!! AAATGGTGCAGTTGGCCTTT+TGG + chr1.1:52882006-52882025 MS.gene49332:CDS 45.0%
AGAAGGCAGAGTTACACCCT+TGG - chr1.1:52882555-52882574 None:intergenic 50.0%
AGGGTGTAACTCTGCCTTCT+GGG + chr1.1:52882555-52882574 MS.gene49332:CDS 50.0%
GTGCAGGTGGGACATTTATC+TGG + chr1.1:52882740-52882759 MS.gene49332:intron 50.0%
TACATCTTAGCCCCAAGTGG+AGG + chr1.1:52883323-52883342 MS.gene49332:CDS 50.0%
TCCCCAGACAAACCACTACT+TGG - chr1.1:52881687-52881706 None:intergenic 50.0%
TGCAATAACCTCCACCCAGA+AGG - chr1.1:52882572-52882591 None:intergenic 50.0%
TTGGAGTATGCAGCTACAGC+AGG + chr1.1:52882025-52882044 MS.gene49332:CDS 50.0%
! AAGGGTGTAACTCTGCCTTC+TGG + chr1.1:52882554-52882573 MS.gene49332:CDS 50.0%
! GCACCAAGTAGTGGTTTGTC+TGG + chr1.1:52881681-52881700 MS.gene49332:CDS 50.0%
! GTCGGTTCACTGAACCATGA+CGG - chr1.1:52883001-52883020 None:intergenic 50.0%
! TAGGTAATGGCAGAGGTGGT+GGG + chr1.1:52881929-52881948 MS.gene49332:intron 50.0%
! TGGTCACTTTCCATGGTCCA+AGG + chr1.1:52882135-52882154 MS.gene49332:CDS 50.0%
!! GGGCTTGCTGTGCTAATTAC+AGG + chr1.1:52882785-52882804 MS.gene49332:CDS 50.0%
ATTCTAAGTGGTCGGCCTCG+AGG - chr1.1:52883055-52883074 None:intergenic 55.0%
CGACCTCAATTTCGCTCGCA+TGG + chr1.1:52881797-52881816 MS.gene49332:CDS 55.0%
GCAGAGTTACACCCTTGGAG+TGG - chr1.1:52882550-52882569 None:intergenic 55.0%
GCTGGACCAAGTGATCTTGC+TGG - chr1.1:52883269-52883288 None:intergenic 55.0%
GTGTAACTCTGCCTTCTGGG+TGG + chr1.1:52882558-52882577 MS.gene49332:CDS 55.0%
TAACTCTGCCTTCTGGGTGG+AGG + chr1.1:52882561-52882580 MS.gene49332:CDS 55.0%
TGTTGCAGCCCTGTATCAGG+TGG + chr1.1:52883233-52883252 MS.gene49332:intron 55.0%
! CTAGGTAATGGCAGAGGTGG+TGG + chr1.1:52881928-52881947 MS.gene49332:intron 55.0%
CTGCCACAGCTCCTCCACTT+GGG - chr1.1:52883337-52883356 None:intergenic 60.0%
TAAGTGGTCGGCCTCGAGGT+GGG - chr1.1:52883051-52883070 None:intergenic 60.0%
TGCCACAGCTCCTCCACTTG+GGG - chr1.1:52883336-52883355 None:intergenic 60.0%
TTGTCAAGTGCCCCACCTCG+AGG + chr1.1:52883037-52883056 MS.gene49332:intron 60.0%
AAGTGGTCGGCCTCGAGGTG+GGG - chr1.1:52883050-52883069 None:intergenic 65.0%
AGCCCCAAGTGGAGGAGCTG+TGG + chr1.1:52883331-52883350 MS.gene49332:CDS 65.0%
CCAAGTGGAGGAGCTGTGGC+AGG + chr1.1:52883335-52883354 MS.gene49332:CDS 65.0%
CCTGCCACAGCTCCTCCACT+TGG - chr1.1:52883338-52883357 None:intergenic 65.0%
CTAAGTGGTCGGCCTCGAGG+TGG - chr1.1:52883052-52883071 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 52881630 52883454 52881630 ID=MS.gene49332
chr1.1 mRNA 52881630 52883454 52881630 ID=MS.gene49332.t1;Parent=MS.gene49332
chr1.1 exon 52881630 52881818 52881630 ID=MS.gene49332.t1.exon1;Parent=MS.gene49332.t1
chr1.1 CDS 52881630 52881818 52881630 ID=cds.MS.gene49332.t1;Parent=MS.gene49332.t1
chr1.1 exon 52881932 52882156 52881932 ID=MS.gene49332.t1.exon2;Parent=MS.gene49332.t1
chr1.1 CDS 52881932 52882156 52881932 ID=cds.MS.gene49332.t1;Parent=MS.gene49332.t1
chr1.1 exon 52882448 52882642 52882448 ID=MS.gene49332.t1.exon3;Parent=MS.gene49332.t1
chr1.1 CDS 52882448 52882642 52882448 ID=cds.MS.gene49332.t1;Parent=MS.gene49332.t1
chr1.1 exon 52882746 52882807 52882746 ID=MS.gene49332.t1.exon4;Parent=MS.gene49332.t1
chr1.1 CDS 52882746 52882807 52882746 ID=cds.MS.gene49332.t1;Parent=MS.gene49332.t1
chr1.1 exon 52883241 52883454 52883241 ID=MS.gene49332.t1.exon5;Parent=MS.gene49332.t1
chr1.1 CDS 52883241 52883454 52883241 ID=cds.MS.gene49332.t1;Parent=MS.gene49332.t1
Gene Sequence

>MS.gene49332

ATGAGAGACATATTTGAAAAACAATCATCATCTCCGGAAGGTTCAAATTATGCACCAAGTAGTGGTTTGTCTGGGGATGATAAAGAGCTTGGCTATAAAGCTGCAACATCAATCCATCCATATCTTTTGGCTAAAAACACTTATCTTCATTTCTTAGCCAACAAAATCGACCTCAATTTCGCTCGCATGGTAATAGTATATTCAATATTTTTATGTGTATATAGAGTGCAATTGTCCCTTGATTATTTTGTCAATAGTCTTTTGATAAATGCAAAATTGAAGTTATTTTGCTATGTATCTAGGTAATGGCAGAGGTGGTGGGTACTTTTATATTGATGTTTTGTGTATGTGGAATCATTGCAAGCACACAACACCAAAATGGTGCAGTTGGCCTTTTGGAGTATGCAGCTACAGCAGGATTAACAGTCGTTGTGATAATCTTCTCTATAGGCTCAATTTCTTGTGCACATGTTAACCCAGCTATCACAATAGCCTTTGCAACAATTGGTCACTTTCCATGGTCCAAGGTTGTTACATAAATAACTACTTAGTCGGTTAAACTTAAAATTTAGATAGTATATCTGATTGATTTATAGAGTTTAATTTTTATGTATTTTTTGTATAATTTTTTTTCTCCGGTTCTATTTATAAGAGAAAGTTTGGTCAACAAAACTTGATGTATCTGGTTAAAAATTCAGTCAAGATACATCAATTTTTGTTGACTTAACTTTCTCTTATAAATAGGACCAGAGTGTACTAATTAAATCAAATTTATAACTATATAATATATACATACCCTTTTATTGTTTCTTAAACAGGTTCCAATTTACATAATAGCACAAACAATTGGTTCTTTGATGGCAACATATATTGGTAGCCTTGTCTATGGCATAAAATCAGAGGTTATGATGACTCAACCACTCCAAGGGTGTAACTCTGCCTTCTGGGTGGAGGTTATTGCAACATTCATCATTATGTTTTTGGTTACAGCTTTGACATCTGAATCTCAATCAGTAAGTACTAATTAAGGAAAAAAATTACATAGTTATATATGTTCCTTAATAATTAGCAATGATTCCATTTTTTTACTAGCTAAAAATTAAAAATATTGTGCAGGTGGGACATTTATCTGGTTTTGTTGCTGGAATTGCAATTGGGCTTGCTGTGCTAATTACAGGGTGGGTACTCACATATATTTGATCACTTTGATATTTATGGAGATATTACTTTGATAAATAGTATTGAAATTTGATTGGATATATGTTTAAAATTCTTTATATGATTAGTAGTACGTTTTGTGTGTGTGCACCATCGTTGTGATGCCATATTCCAACACTCTTCGTTTTGTGTTTATGAAATTCACTCTGACCGTCATGGTTCAGTGAACCGACAACCCAACCAGTAATATTGTCAAGTGCCCCACCTCGAGGCCGACCACTTAGAATGCTATACTTATTTGTCTTGCACTGTAACTTAAGTTGTGTACATAAACATTTTTGTCTAATTGTGTATTTTGTAATAAAAATGTTATATGGATTAATTCTATATCTTACTCTTTAACATGATACTTTAATCTAATAACAAAGTAATTTGATTTAATTTTTGTTGCAGCCCTGTATCAGGTGGATCAATGAATCCAGCAAGATCACTTGGTCCAGCAATTGTGTCATGGAAATTTAAGAACATTTGGATATACATCTTAGCCCCAAGTGGAGGAGCTGTGGCAGGAGCTCTAATGTTTCGTTTCCTACGTCTTAAAGACCAACATTGTAGCTCCCCAAACACTAGTGAAGTTGGTCATCCAATACCTTTTTGTGCAAGTTAG
Protein sequence

>MS.gene49332.t1

MRDIFEKQSSSPEGSNYAPSSGLSGDDKELGYKAATSIHPYLLAKNTYLHFLANKIDLNFARMVMAEVVGTFILMFCVCGIIASTQHQNGAVGLLEYAATAGLTVVVIIFSIGSISCAHVNPAITIAFATIGHFPWSKVPIYIIAQTIGSLMATYIGSLVYGIKSEVMMTQPLQGCNSAFWVEVIATFIIMFLVTALTSESQSVGHLSGFVAGIAIGLAVLITGPVSGGSMNPARSLGPAIVSWKFKNIWIYILAPSGGAVAGALMFRFLRLKDQHCSSPNTSEVGHPIPFCAS