Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50479.t1 | XP_013449731.1 | 85.5 | 303 | 36 | 2 | 1 | 303 | 1 | 295 | 5.50E-110 | 407.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50479.t1 | A0A072U227 | 85.5 | 303 | 36 | 2 | 1 | 303 | 1 | 295 | 4.0e-110 | 407.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049418 | MS.gene50479 | 0.850523 | 1.61E-60 | -1.69E-46 |
| MS.gene049622 | MS.gene50479 | 0.845982 | 2.89E-59 | -1.69E-46 |
| MS.gene049697 | MS.gene50479 | 0.823656 | 1.23E-53 | -1.69E-46 |
| MS.gene04985 | MS.gene50479 | 0.806639 | 7.46E-50 | -1.69E-46 |
| MS.gene049989 | MS.gene50479 | 0.888529 | 5.44E-73 | -1.69E-46 |
| MS.gene050297 | MS.gene50479 | 0.88442 | 1.95E-71 | -1.69E-46 |
| MS.gene050310 | MS.gene50479 | 0.832941 | 7.09E-56 | -1.69E-46 |
| MS.gene050630 | MS.gene50479 | 0.825377 | 4.84E-54 | -1.69E-46 |
| MS.gene050648 | MS.gene50479 | 0.850477 | 1.66E-60 | -1.69E-46 |
| MS.gene051067 | MS.gene50479 | 0.812512 | 4.08E-51 | -1.69E-46 |
| MS.gene051094 | MS.gene50479 | 0.825983 | 3.48E-54 | -1.69E-46 |
| MS.gene051263 | MS.gene50479 | 0.87087 | 1.05E-66 | -1.69E-46 |
| MS.gene051423 | MS.gene50479 | 0.819564 | 1.09E-52 | -1.69E-46 |
| MS.gene051478 | MS.gene50479 | 0.858241 | 9.43E-63 | -1.69E-46 |
| MS.gene051629 | MS.gene50479 | 0.821444 | 4.03E-53 | -1.69E-46 |
| MS.gene051671 | MS.gene50479 | 0.805415 | 1.35E-49 | -1.69E-46 |
| MS.gene051816 | MS.gene50479 | 0.809396 | 1.93E-50 | -1.69E-46 |
| MS.gene051955 | MS.gene50479 | 0.811206 | 7.86E-51 | -1.69E-46 |
| MS.gene052143 | MS.gene50479 | 0.841309 | 5.14E-58 | -1.69E-46 |
| MS.gene052367 | MS.gene50479 | 0.862281 | 5.66E-64 | -1.69E-46 |
| MS.gene052731 | MS.gene50479 | 0.827636 | 1.40E-54 | -1.69E-46 |
| MS.gene053416 | MS.gene50479 | 0.845412 | 4.13E-59 | -1.69E-46 |
| MS.gene053417 | MS.gene50479 | 0.849318 | 3.49E-60 | -1.69E-46 |
| MS.gene053500 | MS.gene50479 | 0.815667 | 8.22E-52 | -1.69E-46 |
| MS.gene054643 | MS.gene50479 | 0.831582 | 1.54E-55 | -1.69E-46 |
| MS.gene055781 | MS.gene50479 | 0.833276 | 5.85E-56 | -1.69E-46 |
| MS.gene055957 | MS.gene50479 | 0.868307 | 7.20E-66 | -1.69E-46 |
| MS.gene056041 | MS.gene50479 | 0.852461 | 4.55E-61 | -1.69E-46 |
| MS.gene056042 | MS.gene50479 | 0.865219 | 6.92E-65 | -1.69E-46 |
| MS.gene056169 | MS.gene50479 | 0.81433 | 1.63E-51 | -1.69E-46 |
| MS.gene056228 | MS.gene50479 | 0.860648 | 1.78E-63 | -1.69E-46 |
| MS.gene056335 | MS.gene50479 | 0.801805 | 7.57E-49 | -1.69E-46 |
| MS.gene056396 | MS.gene50479 | 0.802742 | 4.86E-49 | -1.69E-46 |
| MS.gene056526 | MS.gene50479 | 0.83896 | 2.11E-57 | -1.69E-46 |
| MS.gene057458 | MS.gene50479 | 0.811469 | 6.89E-51 | -1.69E-46 |
| MS.gene057483 | MS.gene50479 | 0.837053 | 6.52E-57 | -1.69E-46 |
| MS.gene058196 | MS.gene50479 | 0.85092 | 1.24E-60 | -1.69E-46 |
| MS.gene058197 | MS.gene50479 | 0.880153 | 6.94E-70 | -1.69E-46 |
| MS.gene058198 | MS.gene50479 | 0.876811 | 1.04E-68 | -1.69E-46 |
| MS.gene058818 | MS.gene50479 | 0.800395 | 1.47E-48 | -1.69E-46 |
| MS.gene059300 | MS.gene50479 | 0.882814 | 7.60E-71 | -1.69E-46 |
| MS.gene060473 | MS.gene50479 | 0.842726 | 2.17E-58 | -1.69E-46 |
| MS.gene060565 | MS.gene50479 | 0.841928 | 3.53E-58 | -1.69E-46 |
| MS.gene06057 | MS.gene50479 | 0.904154 | 1.65E-79 | -1.69E-46 |
| MS.gene061099 | MS.gene50479 | 0.818402 | 2.00E-52 | -1.69E-46 |
| MS.gene061260 | MS.gene50479 | 0.836204 | 1.07E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50479.t1 | MTR_7g094870 | 93.709 | 302 | 11 | 2 | 1 | 302 | 1 | 294 | 0.0 | 540 |
| MS.gene50479.t1 | MTR_8g005120 | 48.837 | 129 | 64 | 1 | 166 | 292 | 169 | 297 | 9.85e-30 | 115 |
| MS.gene50479.t1 | MTR_7g074150 | 31.429 | 280 | 143 | 8 | 38 | 288 | 92 | 351 | 1.28e-28 | 114 |
| MS.gene50479.t1 | MTR_3g062850 | 35.565 | 239 | 115 | 6 | 70 | 293 | 161 | 375 | 7.76e-26 | 107 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50479.t1 | AT4G02800 | 55.108 | 323 | 130 | 6 | 1 | 312 | 1 | 319 | 5.48e-102 | 302 |
| MS.gene50479.t1 | AT5G01970 | 37.441 | 211 | 120 | 4 | 77 | 283 | 6 | 208 | 1.70e-32 | 121 |
| MS.gene50479.t1 | AT5G01970 | 37.327 | 217 | 124 | 4 | 71 | 283 | 97 | 305 | 2.01e-32 | 123 |
| MS.gene50479.t1 | AT1G30050 | 55.556 | 108 | 47 | 1 | 168 | 274 | 183 | 290 | 1.45e-30 | 119 |
| MS.gene50479.t1 | AT2G30530 | 53.271 | 107 | 50 | 0 | 168 | 274 | 226 | 332 | 5.31e-23 | 98.2 |
Find 59 sgRNAs with CRISPR-Local
Find 99 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTAATGAATCTAAGATTT+TGG | 0.072285 | 7.3:-16224964 | None:intergenic |
| ACAGAGTCACAAACAGAAAA+TGG | 0.208517 | 7.3:+16225723 | MS.gene50479:CDS |
| CTTCAGCTGGAAGCACTTCT+TGG | 0.294756 | 7.3:+16226576 | MS.gene50479:CDS |
| CCATAGGGTGCAAGAGAATT+GGG | 0.312480 | 7.3:+16225552 | MS.gene50479:intron |
| TCCATAGGGTGCAAGAGAAT+TGG | 0.320035 | 7.3:+16225551 | MS.gene50479:intron |
| TAATTTGGACAATGCCTTGC+TGG | 0.350274 | 7.3:+16225076 | MS.gene50479:CDS |
| CATCTTCCGATAAACGCTTC+TGG | 0.357963 | 7.3:+16224892 | MS.gene50479:CDS |
| CGAAACCGTCACGCAATCTT+CGG | 0.399997 | 7.3:-16226010 | None:intergenic |
| CAGAGTCACAAACAGAAAAT+GGG | 0.402856 | 7.3:+16225724 | MS.gene50479:CDS |
| GATTCGTTGTTGCTCATAAG+AGG | 0.407447 | 7.3:+16225014 | MS.gene50479:CDS |
| TTGCGTGACGGTTTCGCTAA+AGG | 0.407989 | 7.3:+16226017 | MS.gene50479:CDS |
| TTTGCAGATTGCAGTTTCAA+TGG | 0.433732 | 7.3:+16225893 | MS.gene50479:intron |
| TTCTCCTCTTCACATCAAAC+AGG | 0.442956 | 7.3:+16224740 | MS.gene50479:CDS |
| AGAAGCAGAGAAAGAGAAAG+AGG | 0.454038 | 7.3:+16225647 | MS.gene50479:CDS |
| TTCATCCCTTGTCTCTTCTC+CGG | 0.455453 | 7.3:-16226766 | None:intergenic |
| TCTCCACCACGATCAATTGC+CGG | 0.462348 | 7.3:+16226747 | MS.gene50479:CDS |
| CAGGCCTGAGGAAGATGATC+TGG | 0.475023 | 7.3:+16226043 | MS.gene50479:CDS |
| CCACCAGCTGGTGAAGGCAT+TGG | 0.478762 | 7.3:-16226647 | None:intergenic |
| TGAAAGAGGAAAACGATTGA+AGG | 0.478931 | 7.3:+16224989 | MS.gene50479:CDS |
| GATTCATTACAGAATGAAAG+AGG | 0.481804 | 7.3:+16224975 | MS.gene50479:CDS |
| AGAAGTCCAAGCACATTCCT+TGG | 0.491643 | 7.3:-16226722 | None:intergenic |
| AGTGCTCCAGAAGCGTTTAT+CGG | 0.496763 | 7.3:-16224898 | None:intergenic |
| ACGGTTTCGCTAAAGGAGTC+AGG | 0.501339 | 7.3:+16226024 | MS.gene50479:CDS |
| GGTGTAGGTGAGGCTTCAGC+TGG | 0.502604 | 7.3:+16226563 | MS.gene50479:intron |
| CTTACCAGATCATCTTCCTC+AGG | 0.509130 | 7.3:-16226047 | None:intergenic |
| AATATATCAGTTAATGTGGG+TGG | 0.516844 | 7.3:-16225579 | None:intergenic |
| AAACCAATGCCTTCACCAGC+TGG | 0.518473 | 7.3:+16226644 | MS.gene50479:CDS |
| CAGAAGCGTTTATCGGAAGA+TGG | 0.528157 | 7.3:-16224891 | None:intergenic |
| GGAAGCACTTCTTGGTGAGA+AGG | 0.546681 | 7.3:+16226584 | MS.gene50479:CDS |
| AGTCATCCAAGGAATGTGCT+TGG | 0.547639 | 7.3:+16226716 | MS.gene50479:CDS |
| TTTGAATATATCAGTTAATG+TGG | 0.556491 | 7.3:-16225583 | None:intergenic |
| AAAACCTGTTTGATGTGAAG+AGG | 0.562179 | 7.3:-16224744 | None:intergenic |
| TTGAATATATCAGTTAATGT+GGG | 0.565772 | 7.3:-16225582 | None:intergenic |
| AGTCAAAGCAAGGAGTAAAG+AGG | 0.574305 | 7.3:+16225670 | MS.gene50479:CDS |
| GAAGAGACAAGGGATGAAGA+TGG | 0.575725 | 7.3:+16226771 | MS.gene50479:CDS |
| ATTCGTTGTTGCTCATAAGA+GGG | 0.576596 | 7.3:+16225015 | MS.gene50479:CDS |
| TGTTTGATGTGAAGAGGAGA+AGG | 0.578043 | 7.3:-16224738 | None:intergenic |
| CAATTGCCGGAGAAGAGACA+AGG | 0.585854 | 7.3:+16226760 | MS.gene50479:CDS |
| AAACACCATGACAACCTCGT+TGG | 0.586010 | 7.3:+16224704 | None:intergenic |
| CATAGGGTGCAAGAGAATTG+GGG | 0.596960 | 7.3:+16225553 | MS.gene50479:intron |
| GATACTCCACCAGCTGGTGA+AGG | 0.606126 | 7.3:-16226653 | None:intergenic |
| TCTCCGGCAATTGATCGTGG+TGG | 0.606421 | 7.3:-16226750 | None:intergenic |
| TCTTCTCCGGCAATTGATCG+TGG | 0.606721 | 7.3:-16226753 | None:intergenic |
| TCATATGAGCAAGTCATCCA+AGG | 0.609790 | 7.3:+16226705 | MS.gene50479:CDS |
| CCAATGCCTTCACCAGCTGG+TGG | 0.614590 | 7.3:+16226647 | MS.gene50479:CDS |
| TGTGTCCAACGAGGTTGTCA+TGG | 0.617619 | 7.3:-16224709 | None:intergenic |
| GCTCATAAGAGGGTTTGACT+CGG | 0.617847 | 7.3:+16225025 | MS.gene50479:CDS |
| GAGAAAGAGGAGTCAAAGCA+AGG | 0.618162 | 7.3:+16225660 | MS.gene50479:CDS |
| CGCTAAAGGAGTCAGGCCTG+AGG | 0.629684 | 7.3:+16226031 | MS.gene50479:CDS |
| GTTGATGATACTCCACCAGC+TGG | 0.633667 | 7.3:-16226659 | None:intergenic |
| AGAGTCACAAACAGAAAATG+GGG | 0.641781 | 7.3:+16225725 | MS.gene50479:CDS |
| TGTAATACTACTTACCAGCA+AGG | 0.646639 | 7.3:-16225090 | None:intergenic |
| AATTGCCGGAGAAGAGACAA+GGG | 0.670922 | 7.3:+16226761 | MS.gene50479:CDS |
| TCGGAAGATGGAGTGAACTG+AGG | 0.679491 | 7.3:-16224879 | None:intergenic |
| GAGAACCGAAGATTGCGTGA+CGG | 0.684297 | 7.3:+16226005 | MS.gene50479:CDS |
| GAAGCGAGTCAATTCTACAA+CGG | 0.721187 | 7.3:-16224923 | None:intergenic |
| CTTGCTCATATGACTCAGAG+AGG | 0.724039 | 7.3:-16226695 | None:intergenic |
| AGGAGAAGCTGTGTCCAACG+AGG | 0.737241 | 7.3:-16224718 | None:intergenic |
| GACTCGCTTCTCGATAAACG+CGG | 0.746002 | 7.3:+16224936 | MS.gene50479:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGTAAAACATTAATTAAT+TGG | - | chr7.3:16225152-16225171 | None:intergenic | 10.0% |
| !!! | TTTAGAATTTCATTGATTTT+AGG | + | chr7.3:16226484-16226503 | MS.gene50479:intron | 15.0% |
| !! | AATCTTAATCATATACCATA+TGG | + | chr7.3:16226080-16226099 | MS.gene50479:intron | 20.0% |
| !! | ACTAAAAAATCTACTTTATC+CGG | - | chr7.3:16225497-16225516 | None:intergenic | 20.0% |
| !! | ATTGTAATTAGACATTAGTT+AGG | + | chr7.3:16226198-16226217 | MS.gene50479:intron | 20.0% |
| !! | CATAATAATTTGAACAATTC+AGG | - | chr7.3:16226512-16226531 | None:intergenic | 20.0% |
| !! | CTGAATTGTTCAAATTATTA+TGG | + | chr7.3:16226510-16226529 | MS.gene50479:intron | 20.0% |
| !! | GAGTTATCTAGTTAAAAATT+TGG | + | chr7.3:16225416-16225435 | MS.gene50479:intron | 20.0% |
| !! | TTGAATATATCAGTTAATGT+GGG | - | chr7.3:16225585-16225604 | None:intergenic | 20.0% |
| !! | TTTGAATATATCAGTTAATG+TGG | - | chr7.3:16225586-16225605 | None:intergenic | 20.0% |
| !!! | ATCTCTTTTGTCTAATAATT+TGG | + | chr7.3:16225061-16225080 | MS.gene50479:CDS | 20.0% |
| !!! | ATTCAGATTATTTTTCCATA+GGG | + | chr7.3:16225537-16225556 | MS.gene50479:intron | 20.0% |
| !!! | TGTAATGAATCTAAGATTTT+GGG | - | chr7.3:16224966-16224985 | None:intergenic | 20.0% |
| !!! | TTCAAATTCTTTTAACCATA+TGG | - | chr7.3:16226098-16226117 | None:intergenic | 20.0% |
| !!! | TTTTAACCATATCAAAAAAG+CGG | - | chr7.3:16225233-16225252 | None:intergenic | 20.0% |
| !!! | TTTTTCTTCTATATTTGAGA+CGG | - | chr7.3:16225382-16225401 | None:intergenic | 20.0% |
| ! | ACCAATATAATCTACTAACT+AGG | - | chr7.3:16225837-16225856 | None:intergenic | 25.0% |
| ! | ATCAAGAAAGCAAAAAATGT+TGG | + | chr7.3:16225768-16225787 | MS.gene50479:intron | 25.0% |
| ! | ATTATGGAACTAATCTTATG+TGG | + | chr7.3:16226526-16226545 | MS.gene50479:intron | 25.0% |
| ! | TCCTAGTTAGTAGATTATAT+TGG | + | chr7.3:16225833-16225852 | MS.gene50479:intron | 25.0% |
| ! | TTCTTAAAACAATTGCATTG+AGG | - | chr7.3:16226317-16226336 | None:intergenic | 25.0% |
| !! | TGTTTTCGTTTTATAACAAC+AGG | + | chr7.3:16224827-16224846 | MS.gene50479:intron | 25.0% |
| !!! | CATTCAGATTATTTTTCCAT+AGG | + | chr7.3:16225536-16225555 | MS.gene50479:intron | 25.0% |
| !!! | CTGTAATGAATCTAAGATTT+TGG | - | chr7.3:16224967-16224986 | None:intergenic | 25.0% |
| !!! | GAATCATTGTTGATAACAAT+AGG | + | chr7.3:16226341-16226360 | MS.gene50479:intron | 25.0% |
| !!! | GATGTTTTTTTTAGAGTAAG+AGG | - | chr7.3:16224771-16224790 | None:intergenic | 25.0% |
| !!! | TAATAACCGCTTTTTTGATA+TGG | + | chr7.3:16225224-16225243 | MS.gene50479:intron | 25.0% |
| !!! | TTTTTGTTTATATTCGAGAC+CGG | + | chr7.3:16225475-16225494 | MS.gene50479:intron | 25.0% |
| AACTAATCTTATGTGGATGA+TGG | + | chr7.3:16226533-16226552 | MS.gene50479:intron | 30.0% | |
| AATATATCAGTTAATGTGGG+TGG | - | chr7.3:16225582-16225601 | None:intergenic | 30.0% | |
| GATTCATTACAGAATGAAAG+AGG | + | chr7.3:16224975-16224994 | MS.gene50479:CDS | 30.0% | |
| TATTCTCTTTGAACAATTCC+AGG | - | chr7.3:16226437-16226456 | None:intergenic | 30.0% | |
| ! | CATCAGATTTGCATTTTCAT+TGG | - | chr7.3:16226619-16226638 | None:intergenic | 30.0% |
| ! | TGTTTTATGCAAGAAAGATG+TGG | + | chr7.3:16225969-16225988 | MS.gene50479:CDS | 30.0% |
| !! | CACAGTTTTTCTCTAGAAAT+TGG | + | chr7.3:16226248-16226267 | MS.gene50479:intron | 30.0% |
| !! | TTTTTCTCTAGAAATTGGAG+TGG | + | chr7.3:16226253-16226272 | MS.gene50479:intron | 30.0% |
| AAAACCTGTTTGATGTGAAG+AGG | - | chr7.3:16224747-16224766 | None:intergenic | 35.0% | |
| AACATCACTAACTCTTTCAC+AGG | - | chr7.3:16226127-16226146 | None:intergenic | 35.0% | |
| ACAGAGTCACAAACAGAAAA+TGG | + | chr7.3:16225723-16225742 | MS.gene50479:CDS | 35.0% | |
| AGAGTCACAAACAGAAAATG+GGG | + | chr7.3:16225725-16225744 | MS.gene50479:CDS | 35.0% | |
| ATTCGTTGTTGCTCATAAGA+GGG | + | chr7.3:16225015-16225034 | MS.gene50479:CDS | 35.0% | |
| ATTGGAGTGGTCTAGTTATT+TGG | + | chr7.3:16226266-16226285 | MS.gene50479:intron | 35.0% | |
| CAGAGTCACAAACAGAAAAT+GGG | + | chr7.3:16225724-16225743 | MS.gene50479:CDS | 35.0% | |
| TGAAAGAGGAAAACGATTGA+AGG | + | chr7.3:16224989-16225008 | MS.gene50479:CDS | 35.0% | |
| TGTAATACTACTTACCAGCA+AGG | - | chr7.3:16225093-16225112 | None:intergenic | 35.0% | |
| TTTGCAGATTGCAGTTTCAA+TGG | + | chr7.3:16225893-16225912 | MS.gene50479:intron | 35.0% | |
| ! | ACTAACTAGGACTAGTACAA+TGG | - | chr7.3:16225824-16225843 | None:intergenic | 35.0% |
| ! | TGTGTTGATCAATTTAGTCC+TGG | + | chr7.3:16226416-16226435 | MS.gene50479:intron | 35.0% |
| !! | CTAGTACAATGGTTGATAAG+AGG | - | chr7.3:16225813-16225832 | None:intergenic | 35.0% |
| !! | TATATTGGTGCTGAAGTTTG+TGG | + | chr7.3:16225848-16225867 | MS.gene50479:intron | 35.0% |
| AGAAGCAGAGAAAGAGAAAG+AGG | + | chr7.3:16225647-16225666 | MS.gene50479:CDS | 40.0% | |
| AGTCAAAGCAAGGAGTAAAG+AGG | + | chr7.3:16225670-16225689 | MS.gene50479:CDS | 40.0% | |
| GAAGCGAGTCAATTCTACAA+CGG | - | chr7.3:16224926-16224945 | None:intergenic | 40.0% | |
| GATTCGTTGTTGCTCATAAG+AGG | + | chr7.3:16225014-16225033 | MS.gene50479:CDS | 40.0% | |
| TAATTTGGACAATGCCTTGC+TGG | + | chr7.3:16225076-16225095 | MS.gene50479:CDS | 40.0% | |
| TCATATGAGCAAGTCATCCA+AGG | + | chr7.3:16226705-16226724 | MS.gene50479:CDS | 40.0% | |
| TGTTTGATGTGAAGAGGAGA+AGG | - | chr7.3:16224741-16224760 | None:intergenic | 40.0% | |
| TTCTCCTCTTCACATCAAAC+AGG | + | chr7.3:16224740-16224759 | MS.gene50479:CDS | 40.0% | |
| ! | TATGTGGATGATGGTTTGTG+TGG | + | chr7.3:16226542-16226561 | MS.gene50479:intron | 40.0% |
| AATTGCCGGAGAAGAGACAA+GGG | + | chr7.3:16226761-16226780 | MS.gene50479:CDS | 45.0% | |
| AGAAGTCCAAGCACATTCCT+TGG | - | chr7.3:16226725-16226744 | None:intergenic | 45.0% | |
| AGTCATCCAAGGAATGTGCT+TGG | + | chr7.3:16226716-16226735 | MS.gene50479:CDS | 45.0% | |
| CATAGGGTGCAAGAGAATTG+GGG | + | chr7.3:16225553-16225572 | MS.gene50479:intron | 45.0% | |
| CATCTTCCGATAAACGCTTC+TGG | + | chr7.3:16224892-16224911 | MS.gene50479:CDS | 45.0% | |
| CCATAGGGTGCAAGAGAATT+GGG | + | chr7.3:16225552-16225571 | MS.gene50479:intron | 45.0% | |
| CTGAGGAAGATGATCTGGTA+AGG | + | chr7.3:16226048-16226067 | MS.gene50479:intron | 45.0% | |
| CTTACCAGATCATCTTCCTC+AGG | - | chr7.3:16226050-16226069 | None:intergenic | 45.0% | |
| CTTGCTCATATGACTCAGAG+AGG | - | chr7.3:16226698-16226717 | None:intergenic | 45.0% | |
| GAAGAGACAAGGGATGAAGA+TGG | + | chr7.3:16226771-16226790 | MS.gene50479:CDS | 45.0% | |
| GAGAAAGAGGAGTCAAAGCA+AGG | + | chr7.3:16225660-16225679 | MS.gene50479:CDS | 45.0% | |
| GCTCATAAGAGGGTTTGACT+CGG | + | chr7.3:16225025-16225044 | MS.gene50479:CDS | 45.0% | |
| TCCATAGGGTGCAAGAGAAT+TGG | + | chr7.3:16225551-16225570 | MS.gene50479:intron | 45.0% | |
| TTCATCCCTTGTCTCTTCTC+CGG | - | chr7.3:16226769-16226788 | None:intergenic | 45.0% | |
| ! | GATGATGGTTTGTGTGGTGT+AGG | + | chr7.3:16226548-16226567 | MS.gene50479:intron | 45.0% |
| !! | AGTGCTCCAGAAGCGTTTAT+CGG | - | chr7.3:16224901-16224920 | None:intergenic | 45.0% |
| !! | CAGAAGCGTTTATCGGAAGA+TGG | - | chr7.3:16224894-16224913 | None:intergenic | 45.0% |
| AAACCAATGCCTTCACCAGC+TGG | + | chr7.3:16226644-16226663 | MS.gene50479:CDS | 50.0% | |
| ACGGTTTCGCTAAAGGAGTC+AGG | + | chr7.3:16226024-16226043 | MS.gene50479:CDS | 50.0% | |
| CAATTGCCGGAGAAGAGACA+AGG | + | chr7.3:16226760-16226779 | MS.gene50479:CDS | 50.0% | |
| CCCAATTCTCTTGCACCCTA+TGG | - | chr7.3:16225555-16225574 | None:intergenic | 50.0% | |
| CGAAACCGTCACGCAATCTT+CGG | - | chr7.3:16226013-16226032 | None:intergenic | 50.0% | |
| GACTCGCTTCTCGATAAACG+CGG | + | chr7.3:16224936-16224955 | MS.gene50479:CDS | 50.0% | |
| GAGAACCGAAGATTGCGTGA+CGG | + | chr7.3:16226005-16226024 | MS.gene50479:CDS | 50.0% | |
| TCGGAAGATGGAGTGAACTG+AGG | - | chr7.3:16224882-16224901 | None:intergenic | 50.0% | |
| TCTCCACCACGATCAATTGC+CGG | + | chr7.3:16226747-16226766 | MS.gene50479:CDS | 50.0% | |
| TCTTCTCCGGCAATTGATCG+TGG | - | chr7.3:16226756-16226775 | None:intergenic | 50.0% | |
| TTGCGTGACGGTTTCGCTAA+AGG | + | chr7.3:16226017-16226036 | MS.gene50479:CDS | 50.0% | |
| ! | TGGTTTGTGTGGTGTAGGTG+AGG | + | chr7.3:16226553-16226572 | MS.gene50479:intron | 50.0% |
| !! | CTTCAGCTGGAAGCACTTCT+TGG | + | chr7.3:16226576-16226595 | MS.gene50479:CDS | 50.0% |
| !! | GGAAGCACTTCTTGGTGAGA+AGG | + | chr7.3:16226584-16226603 | MS.gene50479:CDS | 50.0% |
| !! | GTTGATGATACTCCACCAGC+TGG | - | chr7.3:16226662-16226681 | None:intergenic | 50.0% |
| AGGAGAAGCTGTGTCCAACG+AGG | - | chr7.3:16224721-16224740 | None:intergenic | 55.0% | |
| CAGGCCTGAGGAAGATGATC+TGG | + | chr7.3:16226043-16226062 | MS.gene50479:CDS | 55.0% | |
| GATACTCCACCAGCTGGTGA+AGG | - | chr7.3:16226656-16226675 | None:intergenic | 55.0% | |
| TCTCCGGCAATTGATCGTGG+TGG | - | chr7.3:16226753-16226772 | None:intergenic | 55.0% | |
| CCAATGCCTTCACCAGCTGG+TGG | + | chr7.3:16226647-16226666 | MS.gene50479:CDS | 60.0% | |
| CGCTAAAGGAGTCAGGCCTG+AGG | + | chr7.3:16226031-16226050 | MS.gene50479:CDS | 60.0% | |
| GGTGTAGGTGAGGCTTCAGC+TGG | + | chr7.3:16226563-16226582 | MS.gene50479:intron | 60.0% | |
| ! | CCACCAGCTGGTGAAGGCAT+TGG | - | chr7.3:16226650-16226669 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 16224711 | 16226815 | 16224711 | ID=MS.gene50479 |
| chr7.3 | mRNA | 16224711 | 16226815 | 16224711 | ID=MS.gene50479.t1;Parent=MS.gene50479 |
| chr7.3 | exon | 16224711 | 16224761 | 16224711 | ID=MS.gene50479.t1.exon1;Parent=MS.gene50479.t1 |
| chr7.3 | CDS | 16224711 | 16224761 | 16224711 | ID=cds.MS.gene50479.t1;Parent=MS.gene50479.t1 |
| chr7.3 | exon | 16224849 | 16225097 | 16224849 | ID=MS.gene50479.t1.exon2;Parent=MS.gene50479.t1 |
| chr7.3 | CDS | 16224849 | 16225097 | 16224849 | ID=cds.MS.gene50479.t1;Parent=MS.gene50479.t1 |
| chr7.3 | exon | 16225558 | 16225785 | 16225558 | ID=MS.gene50479.t1.exon3;Parent=MS.gene50479.t1 |
| chr7.3 | CDS | 16225558 | 16225785 | 16225558 | ID=cds.MS.gene50479.t1;Parent=MS.gene50479.t1 |
| chr7.3 | exon | 16225900 | 16226064 | 16225900 | ID=MS.gene50479.t1.exon4;Parent=MS.gene50479.t1 |
| chr7.3 | CDS | 16225900 | 16226064 | 16225900 | ID=cds.MS.gene50479.t1;Parent=MS.gene50479.t1 |
| chr7.3 | exon | 16226570 | 16226815 | 16226570 | ID=MS.gene50479.t1.exon5;Parent=MS.gene50479.t1 |
| chr7.3 | CDS | 16226570 | 16226815 | 16226570 | ID=cds.MS.gene50479.t1;Parent=MS.gene50479.t1 |
| Gene Sequence |
| Protein sequence |
