Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50758.t1 | XP_003606958.1 | 100 | 80 | 0 | 0 | 28 | 107 | 28 | 107 | 2.20E-34 | 154.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50758.t1 | Q9SIK2 | 93.8 | 80 | 5 | 0 | 28 | 107 | 29 | 108 | 1.7e-35 | 149.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50758.t1 | B7FH10 | 100.0 | 80 | 0 | 0 | 28 | 107 | 28 | 107 | 1.6e-34 | 154.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049361 | MS.gene50758 | 0.815172 | 1.06E-51 | -1.69E-46 |
| MS.gene049387 | MS.gene50758 | 0.812503 | 4.10E-51 | -1.69E-46 |
| MS.gene050134 | MS.gene50758 | 0.891927 | 2.54E-74 | -1.69E-46 |
| MS.gene050638 | MS.gene50758 | -0.828223 | 1.01E-54 | -1.69E-46 |
| MS.gene050791 | MS.gene50758 | 0.869557 | 2.83E-66 | -1.69E-46 |
| MS.gene050912 | MS.gene50758 | 0.871217 | 8.09E-67 | -1.69E-46 |
| MS.gene051904 | MS.gene50758 | 0.82848 | 8.78E-55 | -1.69E-46 |
| MS.gene051984 | MS.gene50758 | 0.839982 | 1.14E-57 | -1.69E-46 |
| MS.gene052412 | MS.gene50758 | 0.810419 | 1.16E-50 | -1.69E-46 |
| MS.gene052664 | MS.gene50758 | 0.86572 | 4.81E-65 | -1.69E-46 |
| MS.gene052666 | MS.gene50758 | 0.875436 | 3.09E-68 | -1.69E-46 |
| MS.gene053224 | MS.gene50758 | 0.877406 | 6.45E-69 | -1.69E-46 |
| MS.gene057237 | MS.gene50758 | 0.807648 | 4.56E-50 | -1.69E-46 |
| MS.gene057272 | MS.gene50758 | 0.874922 | 4.62E-68 | -1.69E-46 |
| MS.gene057641 | MS.gene50758 | 0.986928 | 1.86E-168 | -1.69E-46 |
| MS.gene057643 | MS.gene50758 | 0.960793 | 5.83E-119 | -1.69E-46 |
| MS.gene059340 | MS.gene50758 | 0.848805 | 4.85E-60 | -1.69E-46 |
| MS.gene060432 | MS.gene50758 | 0.851802 | 7.00E-61 | -1.69E-46 |
| MS.gene060483 | MS.gene50758 | 0.868115 | 8.30E-66 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50758.t1 | MTR_4g070600 | 100.000 | 107 | 0 | 0 | 1 | 107 | 1 | 107 | 1.06e-74 | 216 |
| MS.gene50758.t1 | MTR_2g086610 | 99.065 | 107 | 1 | 0 | 1 | 107 | 1 | 107 | 2.56e-74 | 215 |
| MS.gene50758.t1 | MTR_4g070600 | 99.065 | 107 | 0 | 1 | 1 | 107 | 1 | 106 | 3.00e-72 | 210 |
| MS.gene50758.t1 | MTR_6g015615 | 80.556 | 72 | 4 | 2 | 2 | 72 | 13 | 75 | 2.31e-17 | 70.9 |
| MS.gene50758.t1 | MTR_3g117040 | 80.556 | 72 | 4 | 2 | 2 | 72 | 13 | 75 | 2.31e-17 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50758.t1 | AT2G21580 | 92.593 | 108 | 7 | 1 | 1 | 107 | 1 | 108 | 6.71e-54 | 164 |
| MS.gene50758.t1 | AT4G39200 | 89.815 | 108 | 10 | 1 | 1 | 107 | 1 | 108 | 2.45e-52 | 160 |
| MS.gene50758.t1 | AT2G21580 | 88.889 | 108 | 10 | 2 | 1 | 107 | 1 | 107 | 3.02e-52 | 159 |
| MS.gene50758.t1 | AT4G39200 | 87.963 | 108 | 11 | 2 | 1 | 107 | 1 | 107 | 1.13e-50 | 155 |
| MS.gene50758.t1 | AT4G34555 | 89.720 | 107 | 10 | 1 | 1 | 106 | 1 | 107 | 3.02e-50 | 154 |
| MS.gene50758.t1 | AT2G16360 | 86.667 | 105 | 13 | 1 | 2 | 105 | 2 | 106 | 1.08e-46 | 145 |
Find 38 sgRNAs with CRISPR-Local
Find 115 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTGGTCTATGCAGATTAA+TGG | 0.196241 | 4.2:-36415901 | MS.gene50758:intron |
| AGGAGTGATGAGCTTGTATT+TGG | 0.258319 | 4.2:+36417152 | None:intergenic |
| CTGTTTGCCACCGCCAGATT+TGG | 0.259942 | 4.2:+36418069 | None:intergenic |
| GGAGGAGGAGCTGCCTTCTT+GGG | 0.308666 | 4.2:+36418106 | None:intergenic |
| TCCTCCAAGCCAGCCAAATC+TGG | 0.317280 | 4.2:-36418082 | MS.gene50758:CDS |
| ACCGCCAGATTTGGCTGGCT+TGG | 0.348344 | 4.2:+36418078 | None:intergenic |
| AGGAGGAGGAGCTGCCTTCT+TGG | 0.379715 | 4.2:+36418105 | None:intergenic |
| TGATGGCTAAAGGTTTAATC+AGG | 0.382324 | 4.2:-36415849 | MS.gene50758:CDS |
| CTGTCCTCTCTGATCGTTTG+AGG | 0.389732 | 4.2:-36417128 | MS.gene50758:CDS |
| GAGGGCTATAAGAGACTTGA+TGG | 0.404889 | 4.2:-36415866 | MS.gene50758:CDS |
| CACCTAGGTGTTTGTAGCCC+TGG | 0.406263 | 4.2:+36415792 | None:intergenic |
| TTGCCACCGCCAGATTTGGC+TGG | 0.423311 | 4.2:+36418073 | None:intergenic |
| CAACATGGTGCTGTTTGATC+AGG | 0.424061 | 4.2:-36417205 | MS.gene50758:CDS |
| TGTCCTCTCTGATCGTTTGA+GGG | 0.452861 | 4.2:-36417127 | MS.gene50758:intron |
| GCCAGATTTGGCTGGCTTGG+AGG | 0.465517 | 4.2:+36418081 | None:intergenic |
| ATAAGAGACTTGATGGCTAA+AGG | 0.477465 | 4.2:-36415859 | MS.gene50758:CDS |
| GTGGAGCAAGGGAAAGCAAA+AGG | 0.500179 | 4.2:-36417238 | MS.gene50758:CDS |
| GCTGGCTTGGAGGAAGGAGG+AGG | 0.501135 | 4.2:+36418091 | None:intergenic |
| TTCAGTTAAGAGCTTGTCAT+AGG | 0.503535 | 4.2:+36417179 | None:intergenic |
| GGCTAAAGGTTTAATCAGGT+TGG | 0.524410 | 4.2:-36415845 | MS.gene50758:CDS |
| TAATGGATCACTTGCAAGGA+GGG | 0.537201 | 4.2:-36415884 | MS.gene50758:CDS |
| GATTTGGCTGGCTTGGAGGA+AGG | 0.542704 | 4.2:+36418085 | None:intergenic |
| CAAGTCAGCAGATTTACACC+AGG | 0.557612 | 4.2:-36415810 | MS.gene50758:CDS |
| TGTTTAACAGAAGTGGAGCA+AGG | 0.569376 | 4.2:-36417250 | MS.gene50758:intron |
| AAGCCAGCCAAATCTGGCGG+TGG | 0.569616 | 4.2:-36418076 | MS.gene50758:CDS |
| GGAGTGATGAGCTTGTATTT+GGG | 0.571965 | 4.2:+36417153 | None:intergenic |
| AAACGATCAGAGAGGACAGA+AGG | 0.576753 | 4.2:+36417132 | None:intergenic |
| TTGGCTGGCTTGGAGGAAGG+AGG | 0.587842 | 4.2:+36418088 | None:intergenic |
| CGGTGGCAAACAGAAGAAGA+AGG | 0.599544 | 4.2:-36418059 | MS.gene50758:intron |
| GTTTAACAGAAGTGGAGCAA+GGG | 0.616121 | 4.2:-36417249 | MS.gene50758:intron |
| AACATGGTGCTGTTTGATCA+GGG | 0.617310 | 4.2:-36417204 | MS.gene50758:CDS |
| TCCAAGCCAGCCAAATCTGG+CGG | 0.632166 | 4.2:-36418079 | MS.gene50758:CDS |
| AGATTAATGGATCACTTGCA+AGG | 0.633639 | 4.2:-36415888 | MS.gene50758:CDS |
| AAGTCAGCAGATTTACACCA+GGG | 0.688410 | 4.2:-36415809 | MS.gene50758:CDS |
| TTAATGGATCACTTGCAAGG+AGG | 0.700095 | 4.2:-36415885 | MS.gene50758:CDS |
| CACCAGGGCTACAAACACCT+AGG | 0.701247 | 4.2:-36415794 | None:intergenic |
| AAAGGAGAAAGTGAACAACA+TGG | 0.737054 | 4.2:-36417220 | MS.gene50758:CDS |
| TTACCCTCAAACGATCAGAG+AGG | 0.790654 | 4.2:+36417124 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATTGATGAATTAAATTT+TGG | + | chr4.2:36418057-36418076 | None:intergenic | 10.0% |
| !!! | TTTAATTTTTAAATTAGCAT+TGG | + | chr4.2:36416658-36416677 | None:intergenic | 10.0% |
| !! | ATAAACAATTAAATCTAAAC+AGG | + | chr4.2:36416074-36416093 | None:intergenic | 15.0% |
| !!! | TTTTGTATAATCTATTTCTA+AGG | + | chr4.2:36416512-36416531 | None:intergenic | 15.0% |
| !! | AAAAAAAAAACTTTACCACA+CGG | + | chr4.2:36416562-36416581 | None:intergenic | 20.0% |
| !! | AAACTAGTAATGAAAATCAT+AGG | + | chr4.2:36417210-36417229 | None:intergenic | 20.0% |
| !! | ACTAAATATTTGTGACTAAA+AGG | - | chr4.2:36418018-36418037 | MS.gene50758:intron | 20.0% |
| !! | CTAAATATTTGTGACTAAAA+GGG | - | chr4.2:36418019-36418038 | MS.gene50758:intron | 20.0% |
| !! | TAAGTACAAGAAAAGTTAAA+AGG | + | chr4.2:36415967-36415986 | None:intergenic | 20.0% |
| !!! | AAGATAATAACTGCAATTTT+CGG | + | chr4.2:36417636-36417655 | None:intergenic | 20.0% |
| !!! | AATAATGAATATGTCTTTTG+TGG | - | chr4.2:36418071-36418090 | MS.gene50758:CDS | 20.0% |
| !!! | AATTTAATTTTTGGCCTTTT+TGG | - | chr4.2:36416195-36416214 | MS.gene50758:intron | 20.0% |
| !!! | ACACAAATTTAAGTTGATAA+TGG | - | chr4.2:36417691-36417710 | MS.gene50758:intron | 20.0% |
| !!! | TGATTTGTTAGTGATATTAA+GGG | - | chr4.2:36416706-36416725 | MS.gene50758:intron | 20.0% |
| ! | AAAAAGCTGTTAATCCAAAA+AGG | + | chr4.2:36416212-36416231 | None:intergenic | 25.0% |
| ! | AAATGAACTTAAAATGCACA+AGG | + | chr4.2:36417805-36417824 | None:intergenic | 25.0% |
| ! | AATGACAACGATGAAATTTA+AGG | + | chr4.2:36417742-36417761 | None:intergenic | 25.0% |
| ! | AATGTCATCATAAAGTAAAG+AGG | - | chr4.2:36417716-36417735 | MS.gene50758:intron | 25.0% |
| ! | AGAAGATGAAATGTTAACTA+GGG | - | chr4.2:36417557-36417576 | MS.gene50758:intron | 25.0% |
| ! | ATGTTAAAAGCTTATGTAAG+TGG | + | chr4.2:36416097-36416116 | None:intergenic | 25.0% |
| ! | CTAAATCACAGAACATATAT+TGG | - | chr4.2:36417324-36417343 | MS.gene50758:intron | 25.0% |
| ! | CTTACACCAAATAATACATT+AGG | + | chr4.2:36417880-36417899 | None:intergenic | 25.0% |
| ! | CTTTAGTTGTAAAAATGTTG+TGG | - | chr4.2:36417907-36417926 | MS.gene50758:intron | 25.0% |
| ! | TCTTGAAGATTCTATTGTTT+AGG | - | chr4.2:36417652-36417671 | MS.gene50758:intron | 25.0% |
| !! | GAAAACAACGAATTTTCAAT+CGG | + | chr4.2:36416636-36416655 | None:intergenic | 25.0% |
| !! | TTTACTAATGCCTTTTCTTA+TGG | - | chr4.2:36416892-36416911 | MS.gene50758:intron | 25.0% |
| !!! | AAATTTTTCAGTCCTAGTAT+TGG | - | chr4.2:36417101-36417120 | MS.gene50758:intron | 25.0% |
| !!! | AGTTGTTTTGTAAGCTATAT+TGG | - | chr4.2:36416347-36416366 | MS.gene50758:intron | 25.0% |
| !!! | GTGATTTGTTAGTGATATTA+AGG | - | chr4.2:36416705-36416724 | MS.gene50758:intron | 25.0% |
| !!! | GTTCATTTTTTTGCAATCTT+AGG | - | chr4.2:36417817-36417836 | MS.gene50758:intron | 25.0% |
| !!! | TTTTTTGTGTTTAACAGAAG+TGG | - | chr4.2:36416732-36416751 | MS.gene50758:intron | 25.0% |
| AAACTAATTCCACCAATACT+AGG | + | chr4.2:36417116-36417135 | None:intergenic | 30.0% | |
| AAATCATAGGTTCAATACAG+TGG | + | chr4.2:36417197-36417216 | None:intergenic | 30.0% | |
| AGAACATTAAGGCTAAAAAG+TGG | + | chr4.2:36417239-36417258 | None:intergenic | 30.0% | |
| ATATTAAACAGACCAAAACG+CGG | + | chr4.2:36417264-36417283 | None:intergenic | 30.0% | |
| ATGAATTACAGAGATGAGTA+TGG | + | chr4.2:36415851-36415870 | None:intergenic | 30.0% | |
| CTAGGACTGAAAAATTTAGA+TGG | + | chr4.2:36417098-36417117 | None:intergenic | 30.0% | |
| GAGAAGATGAAATGTTAACT+AGG | - | chr4.2:36417556-36417575 | MS.gene50758:intron | 30.0% | |
| GTTTGGCCTAATGTATTATT+TGG | - | chr4.2:36417871-36417890 | MS.gene50758:intron | 30.0% | |
| TCTAACAAAACTTATGCAAG+TGG | - | chr4.2:36416443-36416462 | MS.gene50758:intron | 30.0% | |
| TTAAGAGATGCTCATTTCTA+GGG | - | chr4.2:36417388-36417407 | MS.gene50758:intron | 30.0% | |
| TTATACCACACCATAAGAAA+AGG | + | chr4.2:36416905-36416924 | None:intergenic | 30.0% | |
| TTTAAGAGATGCTCATTTCT+AGG | - | chr4.2:36417387-36417406 | MS.gene50758:intron | 30.0% | |
| ! | ATGTTTTCACAAAGTAACTG+AGG | + | chr4.2:36417449-36417468 | None:intergenic | 30.0% |
| ! | CTCCTGTGAATGAATTTTAT+GGG | - | chr4.2:36416048-36416067 | MS.gene50758:intron | 30.0% |
| ! | TCTGGACTTGTTTATAAGTT+TGG | - | chr4.2:36417854-36417873 | MS.gene50758:intron | 30.0% |
| !! | TTTCTAGGGCAATATGTATT+TGG | - | chr4.2:36417402-36417421 | MS.gene50758:intron | 30.0% |
| !!! | CTCTGTAATTCATTTTTTGC+AGG | - | chr4.2:36415858-36415877 | MS.gene50758:CDS | 30.0% |
| AAAACGCGGATAGAACATTA+AGG | + | chr4.2:36417250-36417269 | None:intergenic | 35.0% | |
| AAAATGATGAGCATCAGGAT+AGG | + | chr4.2:36417049-36417068 | None:intergenic | 35.0% | |
| AAACATCACTGTAAATGCAG+AGG | + | chr4.2:36417769-36417788 | None:intergenic | 35.0% | |
| AAAGGAGAAAGTGAACAACA+TGG | - | chr4.2:36416769-36416788 | MS.gene50758:intron | 35.0% | |
| CAAAAGATTAAGCGCATGTT+TGG | + | chr4.2:36416489-36416508 | None:intergenic | 35.0% | |
| CTTGAAAAATGATGAGCATC+AGG | + | chr4.2:36417054-36417073 | None:intergenic | 35.0% | |
| GCCATTTAGCACAAAAATTC+TGG | + | chr4.2:36417305-36417324 | None:intergenic | 35.0% | |
| GTATGCGTGCATTATTATGT+TGG | - | chr4.2:36416948-36416967 | MS.gene50758:intron | 35.0% | |
| TGATGGCTAAAGGTTTAATC+AGG | - | chr4.2:36418140-36418159 | MS.gene50758:intron | 35.0% | |
| TTCAGTTAAGAGCTTGTCAT+AGG | + | chr4.2:36416813-36416832 | None:intergenic | 35.0% | |
| TTGTGGTCTATGCAGATTAA+TGG | - | chr4.2:36418088-36418107 | MS.gene50758:CDS | 35.0% | |
| ! | AACTGCAATTTTCGGAAACA+GGG | + | chr4.2:36417628-36417647 | None:intergenic | 35.0% |
| ! | AGATTAATGGATCACTTGCA+AGG | - | chr4.2:36418101-36418120 | MS.gene50758:CDS | 35.0% |
| ! | ATAAGAGACTTGATGGCTAA+AGG | - | chr4.2:36418130-36418149 | MS.gene50758:intron | 35.0% |
| ! | ATTTTCGGAAACAGGGAAAA+TGG | + | chr4.2:36417621-36417640 | None:intergenic | 35.0% |
| ! | CTCTTGTATTGTTGTTCAAG+TGG | - | chr4.2:36417150-36417169 | MS.gene50758:CDS | 35.0% |
| ! | GCCAGAATTTTTGTGCTAAA+TGG | - | chr4.2:36417301-36417320 | MS.gene50758:intron | 35.0% |
| ! | GCTCCTGTGAATGAATTTTA+TGG | - | chr4.2:36416047-36416066 | MS.gene50758:intron | 35.0% |
| ! | GGCTTTTTGAACAATCTCTT+TGG | - | chr4.2:36416607-36416626 | MS.gene50758:intron | 35.0% |
| ! | TAACTGCAATTTTCGGAAAC+AGG | + | chr4.2:36417629-36417648 | None:intergenic | 35.0% |
| ! | TAATGCCTTTTCTTATGGTG+TGG | - | chr4.2:36416897-36416916 | MS.gene50758:intron | 35.0% |
| ! | TTAATGTTCTATCCGCGTTT+TGG | - | chr4.2:36417249-36417268 | MS.gene50758:intron | 35.0% |
| ! | TTTTGGCAAAATGATTGCTC+TGG | - | chr4.2:36416586-36416605 | MS.gene50758:intron | 35.0% |
| !! | TAGGTGTCATTCTAAGTTTC+TGG | - | chr4.2:36417836-36417855 | MS.gene50758:intron | 35.0% |
| !! | TTTTTCAGTCCTAGTATTGG+TGG | - | chr4.2:36417104-36417123 | MS.gene50758:intron | 35.0% |
| AACTTTACCACACGGCATTA+AGG | + | chr4.2:36416554-36416573 | None:intergenic | 40.0% | |
| AAGTCAGCAGATTTACACCA+GGG | - | chr4.2:36418180-36418199 | MS.gene50758:intron | 40.0% | |
| AGGAGTGATGAGCTTGTATT+TGG | + | chr4.2:36416840-36416859 | None:intergenic | 40.0% | |
| CTAGGGCAATATGTATTTGG+AGG | - | chr4.2:36417405-36417424 | MS.gene50758:intron | 40.0% | |
| GGAGTGATGAGCTTGTATTT+GGG | + | chr4.2:36416839-36416858 | None:intergenic | 40.0% | |
| GGCCCATAAAATTCATTCAC+AGG | + | chr4.2:36416053-36416072 | None:intergenic | 40.0% | |
| GGCTAAAGGTTTAATCAGGT+TGG | - | chr4.2:36418144-36418163 | MS.gene50758:intron | 40.0% | |
| GTTTAACAGAAGTGGAGCAA+GGG | - | chr4.2:36416740-36416759 | MS.gene50758:intron | 40.0% | |
| TGTTTAACAGAAGTGGAGCA+AGG | - | chr4.2:36416739-36416758 | MS.gene50758:intron | 40.0% | |
| TTATCTTCCTTAATGCCGTG+TGG | - | chr4.2:36416544-36416563 | MS.gene50758:intron | 40.0% | |
| ! | GGCTCGTATTTTCTGATAAG+TGG | - | chr4.2:36417171-36417190 | MS.gene50758:CDS | 40.0% |
| ! | TAATGGATCACTTGCAAGGA+GGG | - | chr4.2:36418105-36418124 | MS.gene50758:CDS | 40.0% |
| ! | TTAATGGATCACTTGCAAGG+AGG | - | chr4.2:36418104-36418123 | MS.gene50758:CDS | 40.0% |
| !! | AACATGGTGCTGTTTGATCA+GGG | - | chr4.2:36416785-36416804 | MS.gene50758:intron | 40.0% |
| !! | GGAGGTGTTTCTGAGAATAT+AGG | - | chr4.2:36417423-36417442 | MS.gene50758:intron | 40.0% |
| AAACGATCAGAGAGGACAGA+AGG | + | chr4.2:36416860-36416879 | None:intergenic | 45.0% | |
| CAAGTCAGCAGATTTACACC+AGG | - | chr4.2:36418179-36418198 | MS.gene50758:intron | 45.0% | |
| CATCACTGTAAATGCAGAGG+TGG | + | chr4.2:36417766-36417785 | None:intergenic | 45.0% | |
| GAGGGCTATAAGAGACTTGA+TGG | - | chr4.2:36418123-36418142 | MS.gene50758:intron | 45.0% | |
| TCTAGTGTGATGCACACCTT+TGG | - | chr4.2:36417962-36417981 | MS.gene50758:intron | 45.0% | |
| TGTCCTCTCTGATCGTTTGA+GGG | - | chr4.2:36416862-36416881 | MS.gene50758:intron | 45.0% | |
| TTACCCTCAAACGATCAGAG+AGG | + | chr4.2:36416868-36416887 | None:intergenic | 45.0% | |
| ! | GTGAAAGTGCAAGCAACCAA+AGG | + | chr4.2:36417981-36418000 | None:intergenic | 45.0% |
| !! | CAACATGGTGCTGTTTGATC+AGG | - | chr4.2:36416784-36416803 | MS.gene50758:intron | 45.0% |
| !!! | TTTTTTGCAGGCACCCAAGA+AGG | - | chr4.2:36415870-36415889 | MS.gene50758:CDS | 45.0% |
| !!! | AAACAATTAAATTTAATTTT+TGG | - | chr4.2:36416186-36416205 | MS.gene50758:intron | 5.0% |
| !!! | AAGTTTTTTTTTTTTTTTTT+TGG | - | chr4.2:36416569-36416588 | MS.gene50758:intron | 5.0% |
| CGGTGGCAAACAGAAGAAGA+AGG | - | chr4.2:36415930-36415949 | MS.gene50758:intron | 50.0% | |
| CTGTCCTCTCTGATCGTTTG+AGG | - | chr4.2:36416861-36416880 | MS.gene50758:intron | 50.0% | |
| GTGGAGCAAGGGAAAGCAAA+AGG | - | chr4.2:36416751-36416770 | MS.gene50758:intron | 50.0% | |
| CTGTTTGCCACCGCCAGATT+TGG | + | chr4.2:36415923-36415942 | None:intergenic | 55.0% | |
| TCCAAGCCAGCCAAATCTGG+CGG | - | chr4.2:36415910-36415929 | MS.gene50758:intron | 55.0% | |
| TCCTCCAAGCCAGCCAAATC+TGG | - | chr4.2:36415907-36415926 | MS.gene50758:intron | 55.0% | |
| !! | GATTTGGCTGGCTTGGAGGA+AGG | + | chr4.2:36415907-36415926 | None:intergenic | 55.0% |
| AAGCCAGCCAAATCTGGCGG+TGG | - | chr4.2:36415913-36415932 | MS.gene50758:intron | 60.0% | |
| AGGAGGAGGAGCTGCCTTCT+TGG | + | chr4.2:36415887-36415906 | None:intergenic | 60.0% | |
| GGAGGAGGAGCTGCCTTCTT+GGG | + | chr4.2:36415886-36415905 | None:intergenic | 60.0% | |
| TTGCCACCGCCAGATTTGGC+TGG | + | chr4.2:36415919-36415938 | None:intergenic | 60.0% | |
| ! | ACCGCCAGATTTGGCTGGCT+TGG | + | chr4.2:36415914-36415933 | None:intergenic | 60.0% |
| !! | GCCAGATTTGGCTGGCTTGG+AGG | + | chr4.2:36415911-36415930 | None:intergenic | 60.0% |
| !! | TTGGCTGGCTTGGAGGAAGG+AGG | + | chr4.2:36415904-36415923 | None:intergenic | 60.0% |
| !! | GCTGGCTTGGAGGAAGGAGG+AGG | + | chr4.2:36415901-36415920 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 36415795 | 36418216 | 36415795 | ID=MS.gene50758 |
| chr4.2 | mRNA | 36415795 | 36418216 | 36415795 | ID=MS.gene50758.t1;Parent=MS.gene50758 |
| chr4.2 | exon | 36418214 | 36418216 | 36418214 | ID=MS.gene50758.t1.exon1;Parent=MS.gene50758.t1 |
| chr4.2 | CDS | 36418214 | 36418216 | 36418214 | ID=cds.MS.gene50758.t1;Parent=MS.gene50758.t1 |
| chr4.2 | exon | 36418060 | 36418131 | 36418060 | ID=MS.gene50758.t1.exon2;Parent=MS.gene50758.t1 |
| chr4.2 | CDS | 36418060 | 36418131 | 36418060 | ID=cds.MS.gene50758.t1;Parent=MS.gene50758.t1 |
| chr4.2 | exon | 36417128 | 36417262 | 36417128 | ID=MS.gene50758.t1.exon3;Parent=MS.gene50758.t1 |
| chr4.2 | CDS | 36417128 | 36417262 | 36417128 | ID=cds.MS.gene50758.t1;Parent=MS.gene50758.t1 |
| chr4.2 | exon | 36415795 | 36415908 | 36415795 | ID=MS.gene50758.t1.exon4;Parent=MS.gene50758.t1 |
| chr4.2 | CDS | 36415795 | 36415908 | 36415795 | ID=cds.MS.gene50758.t1;Parent=MS.gene50758.t1 |
| Gene Sequence |
| Protein sequence |
