AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene54123

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene54123.t1 MTR_2g067870 99.167 120 1 0 1 120 1 120 1.32e-84 249
MS.gene54123.t1 MTR_2g067860 92.994 157 11 0 121 277 11 167 3.52e-83 247
MS.gene54123.t1 MTR_7g059150 34.314 102 63 1 9 106 102 203 1.91e-15 74.7
MS.gene54123.t1 MTR_2g090135 32.039 103 66 1 9 107 105 207 1.66e-13 69.3
MS.gene54123.t1 MTR_8g012340 35.897 117 63 2 2 106 402 518 7.00e-13 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene54123.t1 AT1G56090 59.170 289 82 8 2 277 7 272 6.63e-94 278
MS.gene54123.t1 AT1G56090 58.478 289 84 7 2 277 81 346 7.95e-93 278
MS.gene54123.t1 AT4G30480 36.893 103 61 1 9 107 112 214 3.67e-16 77.0
MS.gene54123.t1 AT3G25230 33.588 131 75 1 2 120 400 530 1.43e-12 67.8
MS.gene54123.t1 AT3G25230 33.588 131 75 1 2 120 400 530 1.56e-12 67.8
MS.gene54123.t1 AT4G30480 35.955 89 53 1 9 93 112 200 1.27e-11 63.2

Find 49 sgRNAs with CRISPR-Local

Find 155 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACCTGGGGTCTGTTAGTTT+TGG 0.304996 2.3:-27830324 None:intergenic
AGAGGTAAAGAAGGAAGAAA+TGG 0.313693 2.3:+27830218 MS.gene54123:CDS
TAAGCTTCATGATTTCAAAA+AGG 0.324407 2.3:+27828298 MS.gene54123:CDS
TCCAAAGCAGAATGTCCTTT+TGG 0.352019 2.3:-27830474 None:intergenic
ACCTACAAGTCTCATAGTTT+TGG 0.357287 2.3:-27830368 None:intergenic
ATGCAGCAGCTTCTAATGTT+AGG 0.374041 2.3:+27830250 MS.gene54123:CDS
TCCTCTTCTGACTCTGGTAT+TGG 0.396425 2.3:-27830150 None:intergenic
ACCAAAAGGACATTCTGCTT+TGG 0.425541 2.3:+27830473 MS.gene54123:CDS
GATGCTGAGGGCTCAAACAC+TGG 0.436134 2.3:+27829612 MS.gene54123:CDS
CCATGCTTTGGATTGTTGCT+CGG 0.437664 2.3:-27830436 None:intergenic
GAGGTAAAGAAGGAAGAAAT+GGG 0.452461 2.3:+27830219 MS.gene54123:CDS
AGAGTCCGTCACGGTACATC+TGG 0.455718 2.3:-27828178 None:intergenic
TAATGTTAGGAAAGATCTAA+AGG 0.457566 2.3:+27830263 MS.gene54123:CDS
ACCAAAACTATGAGACTTGT+AGG 0.471664 2.3:+27830367 MS.gene54123:CDS
TCCCAGTTTGGATGAAAACC+TGG 0.483342 2.3:-27830340 None:intergenic
AATGTTAGGAAAGATCTAAA+GGG 0.493543 2.3:+27830264 MS.gene54123:CDS
GGCAAAGGTGTTATCAATGT+TGG 0.494024 2.3:+27830294 MS.gene54123:CDS
GCTAGAAAGAGAGGTAAAGA+AGG 0.507146 2.3:+27830209 MS.gene54123:CDS
AGAGTCAGAAGAGGAGTTCG+AGG 0.514125 2.3:+27830158 MS.gene54123:CDS
TGCTTTGGACTACGCTCGGT+GGG 0.522289 2.3:+27830488 MS.gene54123:CDS
TTACACGGACGCTATTGGTA+TGG 0.529585 2.3:+27828220 MS.gene54123:CDS
TCGAACTCCTCTTCTGACTC+TGG 0.530257 2.3:-27830156 None:intergenic
AAAACGATTCCAAAACCAAA+AGG 0.532797 2.3:+27830459 MS.gene54123:CDS
TCAGAAACCTCTCATTTCAC+AGG 0.560954 2.3:-27830603 None:intergenic
CTATGCAAAGCGATCTTCTG+AGG 0.562298 2.3:-27828254 None:intergenic
CCGAGCAACAATCCAAAGCA+TGG 0.565014 2.3:+27830436 MS.gene54123:CDS
CCCAGTTTGGATGAAAACCT+GGG 0.565859 2.3:-27830339 None:intergenic
AAAGATCTAAAGGGTCAGCT+TGG 0.567824 2.3:+27830273 MS.gene54123:CDS
CAAGGCGATGCTAGAAAGAG+AGG 0.568116 2.3:+27830200 MS.gene54123:CDS
ATTCTGCTTTGGACTACGCT+CGG 0.572004 2.3:+27830484 MS.gene54123:CDS
CTAAAGGGTCAGCTTGGCAA+AGG 0.576789 2.3:+27830279 MS.gene54123:CDS
TGCTCGCTTGAAGACACAGT+TGG 0.578848 2.3:+27829723 MS.gene54123:CDS
CGAGGAACATGAAGATGAGA+AGG 0.581126 2.3:+27830176 MS.gene54123:CDS
CAGTGGAGCATTGATGCTGA+GGG 0.584787 2.3:+27829600 MS.gene54123:CDS
ACAGTGGAGCATTGATGCTG+AGG 0.595964 2.3:+27829599 MS.gene54123:CDS
AGTTCCTAAAGCACAAAACA+AGG 0.599618 2.3:+27830407 MS.gene54123:CDS
TCAAACACTGGTGACACTGA+AGG 0.602364 2.3:+27829624 MS.gene54123:CDS
AGATGATTCTAGTGAAGATG+AGG 0.603985 2.3:+27830521 MS.gene54123:CDS
TCCAATACCAGAGTCAGAAG+AGG 0.610299 2.3:+27830149 MS.gene54123:CDS
CTCCAAAACTAACAGACCCC+AGG 0.616760 2.3:+27830322 MS.gene54123:CDS
CTGCTTTGGACTACGCTCGG+TGG 0.619980 2.3:+27830487 MS.gene54123:CDS
TTCACACGAAAACGGTACTG+TGG 0.632801 2.3:-27830564 None:intergenic
CCAGTTTGGATGAAAACCTG+GGG 0.652670 2.3:-27830338 None:intergenic
ACATGAAGATGAGAAGGACA+AGG 0.673983 2.3:+27830182 MS.gene54123:CDS
CCGTGACGGACTCTACAAAG+AGG 0.689205 2.3:+27828187 MS.gene54123:CDS
CCTCTTTGTAGAGTCCGTCA+CGG 0.707488 2.3:-27828187 None:intergenic
GCGACGAACAAGATCGAACG+CGG 0.718343 2.3:+27828152 MS.gene54123:CDS
GGTCACCAGATGTACCGTGA+CGG 0.752683 2.3:+27828173 MS.gene54123:CDS
GAGCTTGATAGCAATCACAG+TGG 0.769707 2.3:+27829583 MS.gene54123:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTCCTTAATTAAAAATA+CGG + chr2.3:27828872-27828891 MS.gene54123:intron 10.0%
!! TAAAATGAGAAATATTTGTT+GGG + chr2.3:27829405-27829424 MS.gene54123:intron 15.0%
!! TTCTAATAATTTAGATTAGT+TGG + chr2.3:27828970-27828989 MS.gene54123:intron 15.0%
!! TTGTAAATATTGTATTAATG+AGG + chr2.3:27828485-27828504 MS.gene54123:intron 15.0%
!! AAAAATATCTTAACCTTGTT+AGG - chr2.3:27828751-27828770 None:intergenic 20.0%
!! AATATTGTATTAATGAGGTT+CGG + chr2.3:27828490-27828509 MS.gene54123:intron 20.0%
!! ATTATATTAGGTAGATTTGA+AGG + chr2.3:27829779-27829798 MS.gene54123:intron 20.0%
!! GATTTGTATTTGTAACAAAT+TGG + chr2.3:27829118-27829137 MS.gene54123:intron 20.0%
!! GTAAAATGAGAAATATTTGT+TGG + chr2.3:27829404-27829423 MS.gene54123:intron 20.0%
!! GTTTAGAAAAAGATAAACTA+TGG - chr2.3:27828437-27828456 None:intergenic 20.0%
!!! TAAAATTTTATTTCCGCATT+TGG - chr2.3:27828855-27828874 None:intergenic 20.0%
!!! TCTCTGTTCATTTTTTTTTT+TGG + chr2.3:27828351-27828370 MS.gene54123:intron 20.0%
!!! TTTTATGAATATTCCTAACA+AGG + chr2.3:27828735-27828754 MS.gene54123:intron 20.0%
! AAAAAATGAACAGAGAATAG+TGG - chr2.3:27828347-27828366 None:intergenic 25.0%
! AAAAAGGGTTCCAAAAAATA+CGG - chr2.3:27829348-27829367 None:intergenic 25.0%
! AATGTTAGGAAAGATCTAAA+GGG + chr2.3:27830264-27830283 MS.gene54123:CDS 25.0%
! AATTCTAGGTCAAATTTACA+AGG - chr2.3:27830047-27830066 None:intergenic 25.0%
! AGAATTGCTAAATACTACAA+AGG - chr2.3:27828930-27828949 None:intergenic 25.0%
! GAATTGCTAAATACTACAAA+GGG - chr2.3:27828929-27828948 None:intergenic 25.0%
! TAAGCTTCATGATTTCAAAA+AGG + chr2.3:27828298-27828317 MS.gene54123:CDS 25.0%
! TAATGTTAGGAAAGATCTAA+AGG + chr2.3:27830263-27830282 MS.gene54123:CDS 25.0%
! TTGTTCAGAATTCAGATTAT+GGG + chr2.3:27829010-27829029 MS.gene54123:intron 25.0%
! TTTGTTCAGAATTCAGATTA+TGG + chr2.3:27829009-27829028 MS.gene54123:intron 25.0%
!! AGATTACTCATAAGTGTTTT+AGG + chr2.3:27829809-27829828 MS.gene54123:intron 25.0%
!! TCATTTTACTATGATTGACT+TGG - chr2.3:27829393-27829412 None:intergenic 25.0%
!!! ACTTGCCGTATTTTTAATTA+AGG - chr2.3:27828880-27828899 None:intergenic 25.0%
!!! TTATCCATTTTGTTTGACAA+TGG + chr2.3:27829209-27829228 MS.gene54123:intron 25.0%
AAAAAGAAGGTAGAGAAGAA+GGG + chr2.3:27830013-27830032 MS.gene54123:intron 30.0%
AAAACGATTCCAAAACCAAA+AGG + chr2.3:27830459-27830478 MS.gene54123:CDS 30.0%
ATGATGCTTACTATCATTTC+AGG + chr2.3:27829534-27829553 MS.gene54123:intron 30.0%
CATTCCAAGAACATAATTCT+AGG - chr2.3:27830061-27830080 None:intergenic 30.0%
CGAAAGAGTCAAAAAAACAA+AGG + chr2.3:27828794-27828813 MS.gene54123:intron 30.0%
GAAGTAGGTCAATAAAAAGA+AGG + chr2.3:27830000-27830019 MS.gene54123:intron 30.0%
TAAAAAGAAGGTAGAGAAGA+AGG + chr2.3:27830012-27830031 MS.gene54123:intron 30.0%
TAAGCATTCTTGAAATTCGT+GGG + chr2.3:27828899-27828918 MS.gene54123:intron 30.0%
TATAGATGTGAAATGAAGAG+AGG + chr2.3:27829970-27829989 MS.gene54123:intron 30.0%
TATTGGAACTATCATAGTTC+TGG + chr2.3:27828712-27828731 MS.gene54123:intron 30.0%
TCAGTTGCATGCATTATATT+AGG + chr2.3:27829767-27829786 MS.gene54123:intron 30.0%
TGGTATTGTTTGAGGATTAT+TGG + chr2.3:27828695-27828714 MS.gene54123:intron 30.0%
TTAGGTAGATTTGAAGGATT+TGG + chr2.3:27829785-27829804 MS.gene54123:intron 30.0%
TTGACCTAGAATTATGTTCT+TGG + chr2.3:27830054-27830073 MS.gene54123:intron 30.0%
TTTACTTGTAGATCTGTAGA+AGG + chr2.3:27829084-27829103 MS.gene54123:intron 30.0%
! CAATTGTTTTCACACGAAAA+CGG - chr2.3:27830575-27830594 None:intergenic 30.0%
!! AAGATTTTGATAGACTTCTG+AGG - chr2.3:27829701-27829720 None:intergenic 30.0%
!! AATTTTATTTCCGCATTTGG+CGG - chr2.3:27828852-27828871 None:intergenic 30.0%
!! ACTACTTTTGCCGTATTTTT+TGG + chr2.3:27829335-27829354 MS.gene54123:intron 30.0%
!! CATTTTGTTTGACAATGGTT+GGG + chr2.3:27829214-27829233 MS.gene54123:intron 30.0%
!! GGATTTCATACTTTGAAATG+AGG + chr2.3:27829426-27829445 MS.gene54123:intron 30.0%
!!! ATGCTATTTTTCATTGCTCA+AGG + chr2.3:27830114-27830133 MS.gene54123:intron 30.0%
!!! GGAATTTTTGGTATTGTTTG+AGG + chr2.3:27828687-27828706 MS.gene54123:intron 30.0%
!!! TGTTTTTTTGACTCTTTCGT+AGG - chr2.3:27828793-27828812 None:intergenic 30.0%
AAAAAAAAGGATTGCTCGAG+AGG + chr2.3:27828661-27828680 MS.gene54123:intron 35.0%
AAAAAAAGGATTGCTCGAGA+GGG + chr2.3:27828662-27828681 MS.gene54123:intron 35.0%
AAGAGAGGAAAAGTAGAAGT+AGG + chr2.3:27829985-27830004 MS.gene54123:intron 35.0%
ACCAAAACTATGAGACTTGT+AGG + chr2.3:27830367-27830386 MS.gene54123:CDS 35.0%
AGAGGTAAAGAAGGAAGAAA+TGG + chr2.3:27830218-27830237 MS.gene54123:CDS 35.0%
AGATGATTCTAGTGAAGATG+AGG + chr2.3:27830521-27830540 MS.gene54123:CDS 35.0%
AGTTCCTAAAGCACAAAACA+AGG + chr2.3:27830407-27830426 MS.gene54123:CDS 35.0%
ATGCATGCAACTGAAATGAA+AGG - chr2.3:27829761-27829780 None:intergenic 35.0%
CCAACCATTGTCAAACAAAA+TGG - chr2.3:27829216-27829235 None:intergenic 35.0%
GAAGAGAAACTGACAAGAAA+GGG - chr2.3:27829452-27829471 None:intergenic 35.0%
GACTTTACTTACAGCACAAT+AGG + chr2.3:27828603-27828622 MS.gene54123:intron 35.0%
GAGGTAAAGAAGGAAGAAAT+GGG + chr2.3:27830219-27830238 MS.gene54123:CDS 35.0%
GCTATCAACAGGATGAAAAA+GGG - chr2.3:27829856-27829875 None:intergenic 35.0%
GTAAGCATTCTTGAAATTCG+TGG + chr2.3:27828898-27828917 MS.gene54123:intron 35.0%
TGCTATCAACAGGATGAAAA+AGG - chr2.3:27829857-27829876 None:intergenic 35.0%
TTGTAGATCTGTAGAAGGAT+AGG + chr2.3:27829089-27829108 MS.gene54123:intron 35.0%
TTTCTATGATCACAATTCGC+AGG - chr2.3:27829251-27829270 None:intergenic 35.0%
! ACCTACAAGTCTCATAGTTT+TGG - chr2.3:27830371-27830390 None:intergenic 35.0%
! CGTTTTCGTGTGAAAACAAT+TGG + chr2.3:27830573-27830592 MS.gene54123:CDS 35.0%
! TATGGGTTGTGAAATGTGAA+TGG + chr2.3:27829027-27829046 MS.gene54123:intron 35.0%
! TTCATCAAAAGCGTACAACT+AGG - chr2.3:27829474-27829493 None:intergenic 35.0%
! TTTTGATGTCAACAGACTCT+TGG + chr2.3:27829663-27829682 MS.gene54123:CDS 35.0%
!! CCATTTTGTTTGACAATGGT+TGG + chr2.3:27829213-27829232 MS.gene54123:intron 35.0%
!! GATTGACTTGGATTAGATAG+AGG - chr2.3:27829381-27829400 None:intergenic 35.0%
!! TTTTGATAGACTTCTGAGGA+TGG - chr2.3:27829697-27829716 None:intergenic 35.0%
!!! GATTCCTTGTTTTGTGCTTT+AGG - chr2.3:27830414-27830433 None:intergenic 35.0%
!!! TTTTTCATCCTGTTGATAGC+AGG + chr2.3:27829856-27829875 MS.gene54123:intron 35.0%
AAAGATCTAAAGGGTCAGCT+TGG + chr2.3:27830273-27830292 MS.gene54123:CDS 40.0%
ACATGAAGATGAGAAGGACA+AGG + chr2.3:27830182-27830201 MS.gene54123:CDS 40.0%
ACCAAAAGGACATTCTGCTT+TGG + chr2.3:27830473-27830492 MS.gene54123:CDS 40.0%
AGAGGCTTAGAGCTCAAAAA+GGG - chr2.3:27829363-27829382 None:intergenic 40.0%
ATGCAGCAGCTTCTAATGTT+AGG + chr2.3:27830250-27830269 MS.gene54123:CDS 40.0%
GCTAGAAAGAGAGGTAAAGA+AGG + chr2.3:27830209-27830228 MS.gene54123:CDS 40.0%
GGAAGAGAAACTGACAAGAA+AGG - chr2.3:27829453-27829472 None:intergenic 40.0%
TAGAGGCTTAGAGCTCAAAA+AGG - chr2.3:27829364-27829383 None:intergenic 40.0%
! AACAGGATGAAAAAGGGCAT+GGG - chr2.3:27829850-27829869 None:intergenic 40.0%
! TCCAAAGCAGAATGTCCTTT+TGG - chr2.3:27830477-27830496 None:intergenic 40.0%
! TGGAATCGTTTTCCATGCTT+TGG - chr2.3:27830451-27830470 None:intergenic 40.0%
!! GGCAAAGGTGTTATCAATGT+TGG + chr2.3:27830294-27830313 MS.gene54123:CDS 40.0%
!!! CGAGCAATCCTTTTTTTTCC+CGG - chr2.3:27828659-27828678 None:intergenic 40.0%
!!! GCAGAATGTCCTTTTGGTTT+TGG - chr2.3:27830471-27830490 None:intergenic 40.0%
ATCAGAGGCCGGGAAAAAAA+AGG + chr2.3:27828648-27828667 MS.gene54123:intron 45.0%
ATTTGGCGGAATTCATGGGA+TGG - chr2.3:27828838-27828857 None:intergenic 45.0%
CAACAGGATGAAAAAGGGCA+TGG - chr2.3:27829851-27829870 None:intergenic 45.0%
CCAGTTTGGATGAAAACCTG+GGG - chr2.3:27830341-27830360 None:intergenic 45.0%
CCCAGTTTGGATGAAAACCT+GGG - chr2.3:27830342-27830361 None:intergenic 45.0%
CGAGGAACATGAAGATGAGA+AGG + chr2.3:27830176-27830195 MS.gene54123:CDS 45.0%
CTATGCAAAGCGATCTTCTG+AGG - chr2.3:27828257-27828276 None:intergenic 45.0%
GATGGGTGGGCATACAAAAT+AGG - chr2.3:27828820-27828839 None:intergenic 45.0%
TCAAACACTGGTGACACTGA+AGG + chr2.3:27829624-27829643 MS.gene54123:CDS 45.0%
TCCAATACCAGAGTCAGAAG+AGG + chr2.3:27830149-27830168 MS.gene54123:CDS 45.0%
TCCCAGTTTGGATGAAAACC+TGG - chr2.3:27830343-27830362 None:intergenic 45.0%
TCCTCTTCTGACTCTGGTAT+TGG - chr2.3:27830153-27830172 None:intergenic 45.0%
TGAGTGTTCCTGCTATCAAC+AGG - chr2.3:27829867-27829886 None:intergenic 45.0%
TTACACGGACGCTATTGGTA+TGG + chr2.3:27828220-27828239 MS.gene54123:CDS 45.0%
TTCACACGAAAACGGTACTG+TGG - chr2.3:27830567-27830586 None:intergenic 45.0%
TTTGGCGGAATTCATGGGAT+GGG - chr2.3:27828837-27828856 None:intergenic 45.0%
! AGGTTATTAGCCCCTTTTCC+CGG + chr2.3:27828623-27828642 MS.gene54123:intron 45.0%
! ATTCTGCTTTGGACTACGCT+CGG + chr2.3:27830484-27830503 MS.gene54123:CDS 45.0%
! CCATGCTTTGGATTGTTGCT+CGG - chr2.3:27830439-27830458 None:intergenic 45.0%
! CCCAGGTTTTCATCCAAACT+GGG + chr2.3:27830339-27830358 MS.gene54123:CDS 45.0%
! GAGCTTGATAGCAATCACAG+TGG + chr2.3:27829583-27829602 MS.gene54123:CDS 45.0%
!! AACCTGGGGTCTGTTAGTTT+TGG - chr2.3:27830327-27830346 None:intergenic 45.0%
!! GTTTTGGTCACTTCCCAGTT+TGG - chr2.3:27830355-27830374 None:intergenic 45.0%
!!! AGAGGCGTTAGCGTTTTACA+CGG + chr2.3:27828205-27828224 MS.gene54123:CDS 45.0%
AAAAGGATTGCTCGAGAGGG+AGG + chr2.3:27828665-27828684 MS.gene54123:intron 50.0%
AAAGGATTGCTCGAGAGGGA+GGG + chr2.3:27828666-27828685 MS.gene54123:intron 50.0%
AGAGTCAGAAGAGGAGTTCG+AGG + chr2.3:27830158-27830177 MS.gene54123:CDS 50.0%
CAAGGCGATGCTAGAAAGAG+AGG + chr2.3:27830200-27830219 MS.gene54123:CDS 50.0%
CCCATGAATTCCGCCAAATG+CGG + chr2.3:27828839-27828858 MS.gene54123:intron 50.0%
CCGAGCAACAATCCAAAGCA+TGG + chr2.3:27830436-27830455 MS.gene54123:CDS 50.0%
CCGCATTTGGCGGAATTCAT+GGG - chr2.3:27828842-27828861 None:intergenic 50.0%
CCTCTTTGTAGAGTCCGTCA+CGG - chr2.3:27828190-27828209 None:intergenic 50.0%
CTAAAGGGTCAGCTTGGCAA+AGG + chr2.3:27830279-27830298 MS.gene54123:CDS 50.0%
CTCCAAAACTAACAGACCCC+AGG + chr2.3:27830322-27830341 MS.gene54123:CDS 50.0%
CTCTGTTCTCACCTGCGAAT+TGG + chr2.3:27829293-27829312 MS.gene54123:intron 50.0%
GTATGCAAGCACCAATTCGC+AGG - chr2.3:27829307-27829326 None:intergenic 50.0%
TCCGCATTTGGCGGAATTCA+TGG - chr2.3:27828843-27828862 None:intergenic 50.0%
TCGAACTCCTCTTCTGACTC+TGG - chr2.3:27830159-27830178 None:intergenic 50.0%
TGCTCGCTTGAAGACACAGT+TGG + chr2.3:27829723-27829742 MS.gene54123:CDS 50.0%
! CCCCAGGTTTTCATCCAAAC+TGG + chr2.3:27830338-27830357 MS.gene54123:CDS 50.0%
! CTCGAGAGGGAGGGAATTTT+TGG + chr2.3:27828675-27828694 MS.gene54123:intron 50.0%
! GAGGTTCGGTTAGACTCAAG+TGG + chr2.3:27828504-27828523 MS.gene54123:intron 50.0%
! GCGTTTTACACGGACGCTAT+TGG + chr2.3:27828215-27828234 MS.gene54123:CDS 50.0%
! GGTTATTAGCCCCTTTTCCC+GGG + chr2.3:27828624-27828643 MS.gene54123:intron 50.0%
!! ACAGTGGAGCATTGATGCTG+AGG + chr2.3:27829599-27829618 MS.gene54123:CDS 50.0%
!! CAGTGGAGCATTGATGCTGA+GGG + chr2.3:27829600-27829619 MS.gene54123:CDS 50.0%
AGAGTCCGTCACGGTACATC+TGG - chr2.3:27828181-27828200 None:intergenic 55.0%
CCTCTGATTCCCGGGAAAAG+GGG - chr2.3:27828636-27828655 None:intergenic 55.0%
GATGCTGAGGGCTCAAACAC+TGG + chr2.3:27829612-27829631 MS.gene54123:CDS 55.0%
GCCTCTGATTCCCGGGAAAA+GGG - chr2.3:27828637-27828656 None:intergenic 55.0%
GCGACGAACAAGATCGAACG+CGG + chr2.3:27828152-27828171 MS.gene54123:CDS 55.0%
GCGGAATTCATGGGATGGGT+GGG - chr2.3:27828833-27828852 None:intergenic 55.0%
GGTCACCAGATGTACCGTGA+CGG + chr2.3:27828173-27828192 MS.gene54123:CDS 55.0%
! TGCTTTGGACTACGCTCGGT+GGG + chr2.3:27830488-27830507 MS.gene54123:CDS 55.0%
! TTTTCCCGGCCTCTGATTCC+CGG - chr2.3:27828645-27828664 None:intergenic 55.0%
! TTTTCCCGGGAATCAGAGGC+CGG + chr2.3:27828637-27828656 MS.gene54123:intron 55.0%
!! CCGTGACGGACTCTACAAAG+AGG + chr2.3:27828187-27828206 MS.gene54123:CDS 55.0%
GGCCTCTGATTCCCGGGAAA+AGG - chr2.3:27828638-27828657 None:intergenic 60.0%
GGCGGAATTCATGGGATGGG+TGG - chr2.3:27828834-27828853 None:intergenic 60.0%
TTTCCCGGCCTCTGATTCCC+GGG - chr2.3:27828644-27828663 None:intergenic 60.0%
TTTCCCGGGAATCAGAGGCC+GGG + chr2.3:27828638-27828657 MS.gene54123:intron 60.0%
! CCCCTTTTCCCGGGAATCAG+AGG + chr2.3:27828633-27828652 MS.gene54123:intron 60.0%
! CTGCTTTGGACTACGCTCGG+TGG + chr2.3:27830487-27830506 MS.gene54123:CDS 60.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 27828149 27830614 27828149 ID=MS.gene54123
chr2.3 mRNA 27828149 27830614 27828149 ID=MS.gene54123.t1;Parent=MS.gene54123
chr2.3 exon 27828149 27828319 27828149 ID=MS.gene54123.t1.exon1;Parent=MS.gene54123.t1
chr2.3 CDS 27828149 27828319 27828149 ID=cds.MS.gene54123.t1;Parent=MS.gene54123.t1
chr2.3 exon 27829556 27829744 27829556 ID=MS.gene54123.t1.exon2;Parent=MS.gene54123.t1
chr2.3 CDS 27829556 27829744 27829556 ID=cds.MS.gene54123.t1;Parent=MS.gene54123.t1
chr2.3 exon 27830141 27830614 27830141 ID=MS.gene54123.t1.exon3;Parent=MS.gene54123.t1
chr2.3 CDS 27830141 27830614 27830141 ID=cds.MS.gene54123.t1;Parent=MS.gene54123.t1
Gene Sequence

>MS.gene54123

ATGGCGACGAACAAGATCGAACGCGGTCACCAGATGTACCGTGACGGACTCTACAAAGAGGCGTTAGCGTTTTACACGGACGCTATTGGTATGGCGAAGACGAATCCTCAGAAGATCGCTTTGCATAGTAATCGTGCTGCTTGTTTTCTTAAGCTTCATGATTTCAAAAAGGTTCGTTTTCTTATTATTATTCTTCCACTATTCTCTGTTCATTTTTTTTTTTGGATGAATTAGTTTTTTAGCATTATTCAAAAAATGAAATTGAAACTATAAATTTTAATTATACCATAGTTTATCTTTTTCTAAACTATTTGATTAATTTTGTGTGTGCTTGTGTTGTAAATATTGTATTAATGAGGTTCGGTTAGACTCAAGTGGTTAATGAGCTTCTGTTAGAAGTCAAATTGACTTAGCGCATGCGAGTTTGATCTACGCTAGAAACAATTTTTTGTTAGACTTTACTTACAGCACAATAGGTTATTAGCCCCTTTTCCCGGGAATCAGAGGCCGGGAAAAAAAAGGATTGCTCGAGAGGGAGGGAATTTTTGGTATTGTTTGAGGATTATTGGAACTATCATAGTTCTGGTTTTATGAATATTCCTAACAAGGTTAAGATATTTTTATCATAAAAAATGATAAAACCTACGAAAGAGTCAAAAAAACAAAGGCCTATTTTGTATGCCCACCCATCCCATGAATTCCGCCAAATGCGGAAATAAAATTTTATTCCTTAATTAAAAATACGGCAAGTAAGCATTCTTGAAATTCGTGGGTTGACCCTTTGTAGTATTTAGCAATTCTCTTCTATGATATTGTATGAATTCTAATAATTTAGATTAGTTGGTGAAATAGTTTGCAAATTTGTTCAGAATTCAGATTATGGGTTGTGAAATGTGAATGGAAAATTGCTTAGTTGAATCTAACTAATTTGTTTGTTTACTTGTAGATCTGTAGAAGGATAGGATCTATGATTTGTATTTGTAACAAATTGGCTGCTTTGTTGATGCTGAATTATTAATCTTATTAGTTTATAGTCTCATTCTATAATCATGATCATTTGTTATCCATTTTGTTTGACAATGGTTGGGATTTATTTTGACCTGCGAATTGTGATCATAGAAACATAATACAGTATTCTGATCTTCTCTGTTCTCACCTGCGAATTGGTGCTTGCATACAACTACACACTACTTTTGCCGTATTTTTTGGAACCCTTTTTGAGCTCTAAGCCTCTATCTAATCCAAGTCAATCATAGTAAAATGAGAAATATTTGTTGGGATTTCATACTTTGAAATGAGGCCCTTTCTTGTCAGTTTCTCTTCCTAGTTGTACGCTTTTGATGAAAGATTTGCAGTTTAATAGTTAGTTTTATACGTTGCAAGCAATGATGCTTACTATCATTTCAGGCAGCAGAAGAATGTACGTCAGTGCTTGAGCTTGATAGCAATCACAGTGGAGCATTGATGCTGAGGGCTCAAACACTGGTGACACTGAAGGAGTATCATTCAGCACTTTTTGATGTCAACAGACTCTTGGAGTTGAATCCATCCTCAGAAGTCTATCAAAATCTTCATGCTCGCTTGAAGACACAGTTGGTACGATGTTGTTCCTTTCATTTCAGTTGCATGCATTATATTAGGTAGATTTGAAGGATTTGGAAGATTACTCATAAGTGTTTTAGGTTTTTTCTTCTATATCCCATGCCCTTTTTCATCCTGTTGATAGCAGGAACACTCATTAAGTGCAGTATGTCAAATAGTTAAAGCTCAAAAATAAACTAATGTTATGTTTGTTAAAAAGAGTTGTATTCAATATTAAAATATAGATGTGAAATGAAGAGAGGAAAAGTAGAAGTAGGTCAATAAAAAGAAGGTAGAGAAGAAGGGTGCACTAACCTTGTAAATTTGACCTAGAATTATGTTCTTGGAATGAATATACTTTGTCAGCTGTGTTGCTAAGAAATGATGCTATTTTTCATTGCTCAAGGAAAGTCACTTGCTCCAATACCAGAGTCAGAAGAGGAGTTCGAGGAACATGAAGATGAGAAGGACAAGGCGATGCTAGAAAGAGAGGTAAAGAAGGAAGAAATGGGACAGAAACATGCAGCAGCTTCTAATGTTAGGAAAGATCTAAAGGGTCAGCTTGGCAAAGGTGTTATCAATGTTGGATGTGCTCCAAAACTAACAGACCCCAGGTTTTCATCCAAACTGGGAAGTGACCAAAACTATGAGACTTGTAGGTCGACGACAGAGAATATAGTTCCTAAAGCACAAAACAAGGAATCATCCGAGCAACAATCCAAAGCATGGAAAACGATTCCAAAACCAAAAGGACATTCTGCTTTGGACTACGCTCGGTGGGACAATGTCGAAGATGATTCTAGTGAAGATGAGGATGAAGATGATGAATCTTTGCCACAGTACCGTTTTCGTGTGAAAACAATTGGTGTACGTCCTGTGAAATGA
Protein sequence

>MS.gene54123.t1

MATNKIERGHQMYRDGLYKEALAFYTDAIGMAKTNPQKIALHSNRAACFLKLHDFKKAAEECTSVLELDSNHSGALMLRAQTLVTLKEYHSALFDVNRLLELNPSSEVYQNLHARLKTQLSLAPIPESEEEFEEHEDEKDKAMLEREVKKEEMGQKHAAASNVRKDLKGQLGKGVINVGCAPKLTDPRFSSKLGSDQNYETCRSTTENIVPKAQNKESSEQQSKAWKTIPKPKGHSALDYARWDNVEDDSSEDEDEDDESLPQYRFRVKTIGVRPVK