Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55246.t1 | XP_003613820.1 | 86.7 | 353 | 46 | 1 | 1 | 352 | 1 | 353 | 3.00E-141 | 511.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55246.t1 | F4I274 | 53.2 | 269 | 103 | 6 | 6 | 262 | 25 | 282 | 3.5e-45 | 183.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55246.t1 | G7KGL2 | 86.7 | 353 | 46 | 1 | 1 | 352 | 1 | 353 | 2.2e-141 | 511.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene55246.t1 | TF | GARP-G2-like |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene55246 | 0.85234 | 4.92E-61 | -1.69E-46 |
| MS.gene049159 | MS.gene55246 | 0.804221 | 2.40E-49 | -1.69E-46 |
| MS.gene049254 | MS.gene55246 | 0.808654 | 2.78E-50 | -1.69E-46 |
| MS.gene049350 | MS.gene55246 | 0.812815 | 3.51E-51 | -1.69E-46 |
| MS.gene049850 | MS.gene55246 | 0.81207 | 5.10E-51 | -1.69E-46 |
| MS.gene051247 | MS.gene55246 | 0.809457 | 1.87E-50 | -1.69E-46 |
| MS.gene051388 | MS.gene55246 | 0.827736 | 1.33E-54 | -1.69E-46 |
| MS.gene052463 | MS.gene55246 | 0.836626 | 8.38E-57 | -1.69E-46 |
| MS.gene052516 | MS.gene55246 | 0.812567 | 3.97E-51 | -1.69E-46 |
| MS.gene052519 | MS.gene55246 | 0.813274 | 2.78E-51 | -1.69E-46 |
| MS.gene052773 | MS.gene55246 | 0.83027 | 3.23E-55 | -1.69E-46 |
| MS.gene052863 | MS.gene55246 | 0.817124 | 3.88E-52 | -1.69E-46 |
| MS.gene053226 | MS.gene55246 | 0.813939 | 1.99E-51 | -1.69E-46 |
| MS.gene054236 | MS.gene55246 | 0.803448 | 3.47E-49 | -1.69E-46 |
| MS.gene054467 | MS.gene55246 | 0.801263 | 9.78E-49 | -1.69E-46 |
| MS.gene05458 | MS.gene55246 | 0.804209 | 2.41E-49 | -1.69E-46 |
| MS.gene054651 | MS.gene55246 | 0.809428 | 1.90E-50 | -1.69E-46 |
| MS.gene054775 | MS.gene55246 | 0.81343 | 2.57E-51 | -1.69E-46 |
| MS.gene054991 | MS.gene55246 | 0.819306 | 1.24E-52 | -1.69E-46 |
| MS.gene055465 | MS.gene55246 | 0.827436 | 1.57E-54 | -1.69E-46 |
| MS.gene055466 | MS.gene55246 | 0.826454 | 2.69E-54 | -1.69E-46 |
| MS.gene055468 | MS.gene55246 | 0.827523 | 1.49E-54 | -1.69E-46 |
| MS.gene055469 | MS.gene55246 | 0.80389 | 2.81E-49 | -1.69E-46 |
| MS.gene055513 | MS.gene55246 | 0.838037 | 3.65E-57 | -1.69E-46 |
| MS.gene055864 | MS.gene55246 | 0.823087 | 1.67E-53 | -1.69E-46 |
| MS.gene055926 | MS.gene55246 | 0.801021 | 1.10E-48 | -1.69E-46 |
| MS.gene056595 | MS.gene55246 | 0.82581 | 3.83E-54 | -1.69E-46 |
| MS.gene05690 | MS.gene55246 | 0.802463 | 5.54E-49 | -1.69E-46 |
| MS.gene057915 | MS.gene55246 | 0.813376 | 2.64E-51 | -1.69E-46 |
| MS.gene058625 | MS.gene55246 | 0.828632 | 8.07E-55 | -1.69E-46 |
| MS.gene059283 | MS.gene55246 | 0.81802 | 2.44E-52 | -1.69E-46 |
| MS.gene06052 | MS.gene55246 | 0.854306 | 1.34E-61 | -1.69E-46 |
| MS.gene060932 | MS.gene55246 | 0.809831 | 1.56E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55246.t1 | MTR_5g041350 | 88.102 | 353 | 41 | 1 | 1 | 352 | 1 | 353 | 0.0 | 612 |
| MS.gene55246.t1 | MTR_5g041350 | 85.932 | 263 | 36 | 1 | 91 | 352 | 2 | 264 | 4.24e-154 | 434 |
| MS.gene55246.t1 | MTR_5g041350 | 86.777 | 242 | 31 | 1 | 112 | 352 | 1 | 242 | 4.12e-142 | 402 |
| MS.gene55246.t1 | MTR_4g081710 | 59.143 | 350 | 127 | 5 | 2 | 349 | 4 | 339 | 7.61e-130 | 375 |
| MS.gene55246.t1 | MTR_2g086450 | 50.612 | 245 | 103 | 5 | 8 | 244 | 38 | 272 | 1.55e-68 | 220 |
| MS.gene55246.t1 | MTR_6g032990 | 48.696 | 230 | 111 | 3 | 8 | 233 | 35 | 261 | 7.93e-62 | 203 |
| MS.gene55246.t1 | MTR_6g444980 | 55.414 | 157 | 61 | 3 | 8 | 164 | 28 | 175 | 5.03e-48 | 166 |
| MS.gene55246.t1 | MTR_5g027440 | 44.324 | 185 | 95 | 4 | 5 | 186 | 15 | 194 | 1.03e-44 | 155 |
| MS.gene55246.t1 | MTR_6g444980 | 52.174 | 161 | 68 | 3 | 8 | 168 | 28 | 179 | 1.08e-43 | 154 |
| MS.gene55246.t1 | MTR_2g027800 | 41.949 | 236 | 116 | 7 | 8 | 230 | 32 | 259 | 7.40e-42 | 148 |
| MS.gene55246.t1 | MTR_7g088070 | 50.345 | 145 | 63 | 2 | 14 | 158 | 49 | 184 | 1.71e-41 | 146 |
| MS.gene55246.t1 | MTR_7g088070 | 50.345 | 145 | 59 | 3 | 14 | 158 | 49 | 180 | 1.56e-40 | 144 |
| MS.gene55246.t1 | MTR_2g027800 | 41.202 | 233 | 108 | 7 | 8 | 230 | 32 | 245 | 2.82e-40 | 144 |
| MS.gene55246.t1 | MTR_1g090670 | 49.296 | 142 | 69 | 1 | 8 | 149 | 37 | 175 | 1.90e-38 | 139 |
| MS.gene55246.t1 | MTR_2g027860 | 47.742 | 155 | 70 | 3 | 15 | 169 | 49 | 192 | 1.76e-37 | 137 |
| MS.gene55246.t1 | MTR_7g098250 | 42.857 | 147 | 68 | 2 | 11 | 155 | 258 | 390 | 4.02e-35 | 134 |
| MS.gene55246.t1 | MTR_7g115530 | 37.037 | 189 | 95 | 3 | 14 | 200 | 217 | 383 | 2.16e-34 | 131 |
| MS.gene55246.t1 | MTR_1g080330 | 43.125 | 160 | 73 | 5 | 11 | 168 | 171 | 314 | 1.07e-33 | 128 |
| MS.gene55246.t1 | MTR_1g053835 | 38.255 | 149 | 78 | 1 | 11 | 159 | 254 | 388 | 5.59e-31 | 122 |
| MS.gene55246.t1 | MTR_7g093030 | 35.669 | 157 | 88 | 3 | 14 | 170 | 211 | 354 | 1.12e-28 | 115 |
| MS.gene55246.t1 | MTR_1g080330 | 43.651 | 126 | 55 | 4 | 11 | 134 | 171 | 282 | 5.86e-26 | 105 |
| MS.gene55246.t1 | MTR_7g115530 | 42.742 | 124 | 55 | 2 | 14 | 135 | 217 | 326 | 9.98e-26 | 105 |
| MS.gene55246.t1 | MTR_7g068600 | 39.310 | 145 | 73 | 4 | 11 | 152 | 9 | 141 | 4.55e-25 | 102 |
| MS.gene55246.t1 | MTR_1g053800 | 38.255 | 149 | 73 | 2 | 8 | 153 | 170 | 302 | 2.36e-22 | 96.3 |
| MS.gene55246.t1 | MTR_7g115530 | 50.000 | 82 | 39 | 1 | 14 | 93 | 217 | 298 | 1.20e-20 | 91.3 |
| MS.gene55246.t1 | MTR_7g115530 | 56.897 | 58 | 25 | 0 | 14 | 71 | 217 | 274 | 1.48e-19 | 89.0 |
| MS.gene55246.t1 | MTR_7g115530 | 58.491 | 53 | 22 | 0 | 14 | 66 | 217 | 269 | 5.44e-18 | 83.2 |
| MS.gene55246.t1 | MTR_7g093030 | 53.448 | 58 | 27 | 0 | 14 | 71 | 211 | 268 | 5.86e-18 | 83.6 |
| MS.gene55246.t1 | MTR_1g053830 | 47.541 | 61 | 32 | 0 | 11 | 71 | 14 | 74 | 9.75e-18 | 77.8 |
| MS.gene55246.t1 | MTR_7g115530 | 55.556 | 54 | 24 | 0 | 14 | 67 | 217 | 270 | 3.70e-17 | 81.3 |
| MS.gene55246.t1 | MTR_1g112370 | 47.191 | 89 | 37 | 3 | 16 | 99 | 23 | 106 | 6.87e-16 | 78.2 |
| MS.gene55246.t1 | MTR_5g029470 | 44.872 | 78 | 43 | 0 | 16 | 93 | 220 | 297 | 9.81e-16 | 78.2 |
| MS.gene55246.t1 | MTR_3g450310 | 50.820 | 61 | 30 | 0 | 15 | 75 | 19 | 79 | 1.15e-15 | 75.5 |
| MS.gene55246.t1 | MTR_0223s0040 | 48.684 | 76 | 36 | 1 | 16 | 88 | 19 | 94 | 1.22e-15 | 76.6 |
| MS.gene55246.t1 | MTR_1g090670 | 42.718 | 103 | 56 | 1 | 47 | 149 | 1 | 100 | 1.33e-15 | 75.5 |
| MS.gene55246.t1 | MTR_6g071625 | 42.045 | 88 | 50 | 1 | 16 | 102 | 203 | 290 | 1.60e-15 | 77.4 |
| MS.gene55246.t1 | MTR_7g069660 | 54.717 | 53 | 24 | 0 | 16 | 68 | 72 | 124 | 2.53e-15 | 76.6 |
| MS.gene55246.t1 | MTR_2g023580 | 50.000 | 60 | 30 | 0 | 16 | 75 | 56 | 115 | 3.29e-15 | 74.7 |
| MS.gene55246.t1 | MTR_4g021790 | 56.364 | 55 | 23 | 1 | 15 | 69 | 168 | 221 | 8.79e-15 | 73.9 |
| MS.gene55246.t1 | MTR_8g066310 | 45.070 | 71 | 39 | 0 | 16 | 86 | 174 | 244 | 1.79e-14 | 73.9 |
| MS.gene55246.t1 | MTR_2g016220 | 40.217 | 92 | 46 | 3 | 7 | 98 | 83 | 165 | 2.43e-14 | 73.9 |
| MS.gene55246.t1 | MTR_2g016220 | 40.217 | 92 | 46 | 3 | 7 | 98 | 83 | 165 | 2.75e-14 | 73.6 |
| MS.gene55246.t1 | MTR_3g064840 | 52.632 | 57 | 27 | 0 | 16 | 72 | 275 | 331 | 2.85e-14 | 73.9 |
| MS.gene55246.t1 | MTR_1g021520 | 39.773 | 88 | 45 | 1 | 16 | 95 | 127 | 214 | 3.65e-14 | 72.4 |
| MS.gene55246.t1 | MTR_2g016220 | 37.634 | 93 | 51 | 3 | 7 | 98 | 83 | 169 | 9.37e-14 | 72.0 |
| MS.gene55246.t1 | MTR_8g086410 | 50.000 | 56 | 28 | 0 | 16 | 71 | 110 | 165 | 1.09e-13 | 72.0 |
| MS.gene55246.t1 | MTR_8g086410 | 50.943 | 53 | 26 | 0 | 16 | 68 | 112 | 164 | 1.10e-13 | 72.0 |
| MS.gene55246.t1 | MTR_4g121020 | 55.932 | 59 | 25 | 1 | 11 | 69 | 211 | 268 | 1.16e-13 | 72.4 |
| MS.gene55246.t1 | MTR_4g121020 | 55.932 | 59 | 25 | 1 | 11 | 69 | 211 | 268 | 1.18e-13 | 72.4 |
| MS.gene55246.t1 | MTR_4g121020 | 55.932 | 59 | 25 | 1 | 11 | 69 | 107 | 164 | 1.21e-13 | 72.4 |
| MS.gene55246.t1 | MTR_2g084230 | 50.943 | 53 | 26 | 0 | 16 | 68 | 98 | 150 | 1.51e-13 | 70.9 |
| MS.gene55246.t1 | MTR_2g084230 | 50.943 | 53 | 26 | 0 | 16 | 68 | 98 | 150 | 1.56e-13 | 71.2 |
| MS.gene55246.t1 | MTR_4g021760 | 55.556 | 54 | 23 | 1 | 15 | 68 | 169 | 221 | 1.85e-13 | 70.5 |
| MS.gene55246.t1 | MTR_2g034960 | 52.857 | 70 | 26 | 2 | 11 | 74 | 207 | 275 | 2.18e-13 | 71.6 |
| MS.gene55246.t1 | MTR_4g021855 | 44.304 | 79 | 39 | 2 | 15 | 93 | 168 | 241 | 3.02e-13 | 69.7 |
| MS.gene55246.t1 | MTR_4g021845 | 56.863 | 51 | 21 | 1 | 15 | 65 | 168 | 217 | 3.48e-13 | 68.6 |
| MS.gene55246.t1 | MTR_5g017980 | 58.182 | 55 | 23 | 0 | 15 | 69 | 193 | 247 | 4.83e-13 | 69.7 |
| MS.gene55246.t1 | MTR_8g086410 | 43.077 | 65 | 33 | 1 | 16 | 76 | 112 | 176 | 7.92e-13 | 69.7 |
| MS.gene55246.t1 | MTR_1g032570 | 52.542 | 59 | 27 | 1 | 11 | 69 | 127 | 184 | 1.15e-12 | 69.3 |
| MS.gene55246.t1 | MTR_1g032570 | 52.542 | 59 | 27 | 1 | 11 | 69 | 196 | 253 | 1.25e-12 | 69.3 |
| MS.gene55246.t1 | MTR_4g086835 | 53.448 | 58 | 27 | 0 | 12 | 69 | 271 | 328 | 1.57e-12 | 68.6 |
| MS.gene55246.t1 | MTR_7g093010 | 32.847 | 137 | 79 | 3 | 15 | 150 | 213 | 337 | 1.75e-12 | 68.2 |
| MS.gene55246.t1 | MTR_2g450070 | 50.847 | 59 | 28 | 1 | 11 | 69 | 209 | 266 | 1.84e-12 | 68.9 |
| MS.gene55246.t1 | MTR_2g450070 | 50.847 | 59 | 28 | 1 | 11 | 69 | 209 | 266 | 1.95e-12 | 68.6 |
| MS.gene55246.t1 | MTR_7g089010 | 54.545 | 55 | 24 | 1 | 15 | 69 | 91 | 144 | 2.20e-12 | 67.4 |
| MS.gene55246.t1 | MTR_4g064730 | 51.724 | 58 | 27 | 1 | 12 | 69 | 128 | 184 | 3.57e-12 | 66.6 |
| MS.gene55246.t1 | MTR_4g113140 | 51.724 | 58 | 28 | 0 | 12 | 69 | 232 | 289 | 6.67e-12 | 66.6 |
| MS.gene55246.t1 | MTR_1g093080 | 58.182 | 55 | 23 | 0 | 15 | 69 | 211 | 265 | 9.18e-12 | 65.9 |
| MS.gene55246.t1 | MTR_5g017980 | 58.182 | 55 | 22 | 1 | 15 | 69 | 192 | 245 | 1.07e-11 | 65.5 |
| MS.gene55246.t1 | MTR_5g017980 | 58.182 | 55 | 22 | 1 | 15 | 69 | 193 | 246 | 1.12e-11 | 65.5 |
| MS.gene55246.t1 | MTR_7g026400 | 52.727 | 55 | 25 | 1 | 15 | 69 | 157 | 210 | 1.74e-11 | 65.9 |
| MS.gene55246.t1 | MTR_4g086835 | 53.448 | 58 | 26 | 1 | 12 | 69 | 271 | 327 | 2.30e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55246.t1 | AT1G69580 | 50.000 | 266 | 116 | 5 | 6 | 262 | 25 | 282 | 1.59e-75 | 236 |
| MS.gene55246.t1 | AT1G69580 | 49.438 | 267 | 117 | 5 | 6 | 262 | 25 | 283 | 2.71e-74 | 233 |
| MS.gene55246.t1 | AT3G04030 | 53.648 | 233 | 98 | 4 | 8 | 235 | 38 | 265 | 4.30e-67 | 216 |
| MS.gene55246.t1 | AT5G18240 | 51.931 | 233 | 102 | 4 | 8 | 235 | 38 | 265 | 3.28e-66 | 214 |
| MS.gene55246.t1 | AT5G18240 | 51.931 | 233 | 102 | 4 | 8 | 235 | 38 | 265 | 3.28e-66 | 214 |
| MS.gene55246.t1 | AT3G04030 | 52.790 | 233 | 99 | 5 | 8 | 235 | 38 | 264 | 4.35e-64 | 209 |
| MS.gene55246.t1 | AT5G18240 | 51.073 | 233 | 102 | 5 | 8 | 235 | 38 | 263 | 9.85e-63 | 205 |
| MS.gene55246.t1 | AT3G04030 | 51.502 | 233 | 97 | 5 | 8 | 235 | 38 | 259 | 2.48e-60 | 199 |
| MS.gene55246.t1 | AT5G18240 | 49.785 | 233 | 101 | 5 | 8 | 235 | 38 | 259 | 1.82e-59 | 197 |
| MS.gene55246.t1 | AT5G18240 | 49.785 | 233 | 101 | 5 | 8 | 235 | 38 | 259 | 1.82e-59 | 197 |
| MS.gene55246.t1 | AT3G24120 | 45.133 | 226 | 116 | 4 | 8 | 226 | 34 | 258 | 8.37e-56 | 184 |
| MS.gene55246.t1 | AT4G13640 | 44.681 | 235 | 108 | 6 | 8 | 230 | 30 | 254 | 2.08e-55 | 183 |
| MS.gene55246.t1 | AT3G24120 | 44.541 | 229 | 116 | 5 | 8 | 226 | 34 | 261 | 1.30e-53 | 179 |
| MS.gene55246.t1 | AT4G13640 | 44.304 | 237 | 107 | 7 | 8 | 229 | 30 | 256 | 3.49e-53 | 177 |
| MS.gene55246.t1 | AT1G79430 | 56.051 | 157 | 60 | 3 | 8 | 164 | 27 | 174 | 3.59e-50 | 171 |
| MS.gene55246.t1 | AT5G45580 | 43.293 | 164 | 87 | 2 | 9 | 166 | 1 | 164 | 6.88e-41 | 144 |
| MS.gene55246.t1 | AT5G45580 | 43.293 | 164 | 87 | 2 | 9 | 166 | 17 | 180 | 8.85e-41 | 145 |
| MS.gene55246.t1 | AT3G04030 | 48.454 | 194 | 90 | 4 | 47 | 235 | 1 | 189 | 1.39e-39 | 142 |
| MS.gene55246.t1 | AT2G01060 | 48.052 | 154 | 68 | 4 | 14 | 167 | 14 | 155 | 2.80e-39 | 141 |
| MS.gene55246.t1 | AT3G12730 | 48.052 | 154 | 72 | 3 | 8 | 159 | 16 | 163 | 3.72e-39 | 139 |
| MS.gene55246.t1 | AT5G29000 | 43.333 | 150 | 66 | 3 | 14 | 158 | 187 | 322 | 3.26e-34 | 129 |
| MS.gene55246.t1 | AT5G29000 | 43.333 | 150 | 66 | 3 | 14 | 158 | 187 | 322 | 3.26e-34 | 129 |
| MS.gene55246.t1 | AT3G04450 | 42.568 | 148 | 76 | 2 | 11 | 158 | 194 | 332 | 4.19e-34 | 130 |
| MS.gene55246.t1 | AT3G04450 | 42.568 | 148 | 76 | 2 | 11 | 158 | 194 | 332 | 4.19e-34 | 130 |
| MS.gene55246.t1 | AT3G04450 | 42.568 | 148 | 76 | 2 | 11 | 158 | 234 | 372 | 5.48e-34 | 130 |
| MS.gene55246.t1 | AT5G29000 | 43.333 | 150 | 66 | 3 | 14 | 158 | 230 | 365 | 6.57e-34 | 129 |
| MS.gene55246.t1 | AT4G28610 | 41.216 | 148 | 76 | 2 | 14 | 161 | 224 | 360 | 2.39e-33 | 128 |
| MS.gene55246.t1 | AT3G04030 | 45.876 | 194 | 89 | 5 | 47 | 235 | 1 | 183 | 5.66e-33 | 125 |
| MS.gene55246.t1 | AT5G18240 | 44.845 | 194 | 91 | 5 | 47 | 235 | 1 | 183 | 7.40e-33 | 125 |
| MS.gene55246.t1 | AT5G06800 | 40.972 | 144 | 77 | 2 | 15 | 158 | 192 | 327 | 1.99e-30 | 119 |
| MS.gene55246.t1 | AT5G06800 | 40.278 | 144 | 73 | 2 | 15 | 158 | 192 | 322 | 1.06e-29 | 117 |
| MS.gene55246.t1 | AT3G13040 | 41.781 | 146 | 72 | 3 | 11 | 153 | 237 | 372 | 9.58e-29 | 116 |
| MS.gene55246.t1 | AT3G13040 | 41.781 | 146 | 72 | 3 | 11 | 153 | 237 | 372 | 9.58e-29 | 116 |
| MS.gene55246.t1 | AT3G13040 | 41.781 | 146 | 72 | 3 | 11 | 153 | 237 | 372 | 9.58e-29 | 116 |
| MS.gene55246.t1 | AT2G20400 | 41.176 | 153 | 69 | 3 | 15 | 162 | 231 | 367 | 1.98e-28 | 114 |
| MS.gene55246.t1 | AT2G20400 | 40.523 | 153 | 69 | 3 | 15 | 162 | 231 | 366 | 6.36e-28 | 113 |
| MS.gene55246.t1 | AT1G79430 | 51.695 | 118 | 48 | 3 | 47 | 164 | 1 | 109 | 6.69e-27 | 108 |
| MS.gene55246.t1 | AT3G04450 | 55.738 | 61 | 27 | 0 | 11 | 71 | 234 | 294 | 1.06e-19 | 88.6 |
| MS.gene55246.t1 | AT2G01060 | 44.068 | 118 | 54 | 4 | 50 | 167 | 1 | 106 | 1.52e-19 | 87.0 |
| MS.gene55246.t1 | AT5G29000 | 55.172 | 58 | 26 | 0 | 14 | 71 | 230 | 287 | 2.76e-19 | 87.4 |
| MS.gene55246.t1 | AT2G06020 | 52.459 | 61 | 29 | 0 | 11 | 71 | 82 | 142 | 4.18e-17 | 81.3 |
| MS.gene55246.t1 | AT5G06800 | 54.386 | 57 | 26 | 0 | 15 | 71 | 192 | 248 | 5.35e-17 | 80.5 |
| MS.gene55246.t1 | AT1G32240 | 35.246 | 122 | 74 | 2 | 16 | 132 | 214 | 335 | 1.53e-16 | 80.5 |
| MS.gene55246.t1 | AT1G32240 | 35.246 | 122 | 74 | 2 | 16 | 132 | 214 | 335 | 1.66e-16 | 80.1 |
| MS.gene55246.t1 | AT1G14600 | 56.604 | 53 | 23 | 0 | 16 | 68 | 24 | 76 | 1.90e-16 | 78.6 |
| MS.gene55246.t1 | AT3G12730 | 41.739 | 115 | 59 | 3 | 47 | 159 | 1 | 109 | 3.04e-16 | 76.3 |
| MS.gene55246.t1 | AT2G02060 | 50.820 | 61 | 30 | 0 | 16 | 76 | 30 | 90 | 8.52e-16 | 76.6 |
| MS.gene55246.t1 | AT2G02060 | 50.820 | 61 | 30 | 0 | 16 | 76 | 30 | 90 | 8.52e-16 | 76.6 |
| MS.gene55246.t1 | AT4G17695 | 45.570 | 79 | 37 | 1 | 16 | 88 | 165 | 243 | 6.51e-15 | 75.1 |
| MS.gene55246.t1 | AT5G16560 | 52.632 | 57 | 27 | 0 | 16 | 72 | 220 | 276 | 1.11e-14 | 75.1 |
| MS.gene55246.t1 | AT2G38300 | 54.717 | 53 | 24 | 0 | 16 | 68 | 55 | 107 | 2.06e-14 | 73.9 |
| MS.gene55246.t1 | AT4G04605 | 50.943 | 53 | 26 | 0 | 16 | 68 | 15 | 67 | 3.02e-14 | 71.6 |
| MS.gene55246.t1 | AT5G42630 | 51.786 | 56 | 27 | 0 | 16 | 71 | 106 | 161 | 3.17e-14 | 71.6 |
| MS.gene55246.t1 | AT5G42630 | 51.786 | 56 | 27 | 0 | 16 | 71 | 106 | 161 | 4.78e-14 | 72.0 |
| MS.gene55246.t1 | AT2G42660 | 48.438 | 64 | 30 | 1 | 16 | 79 | 51 | 111 | 6.43e-14 | 71.2 |
| MS.gene55246.t1 | AT2G40260 | 49.153 | 59 | 30 | 0 | 16 | 74 | 83 | 141 | 1.24e-13 | 72.0 |
| MS.gene55246.t1 | AT5G59570 | 51.724 | 58 | 27 | 1 | 12 | 69 | 138 | 194 | 2.96e-13 | 70.1 |
| MS.gene55246.t1 | AT5G59570 | 51.724 | 58 | 27 | 1 | 12 | 69 | 138 | 194 | 2.96e-13 | 70.1 |
| MS.gene55246.t1 | AT4G04580 | 52.830 | 53 | 25 | 0 | 16 | 68 | 15 | 67 | 5.52e-13 | 66.6 |
| MS.gene55246.t1 | AT2G40970 | 53.448 | 58 | 26 | 1 | 12 | 69 | 102 | 158 | 5.71e-13 | 68.6 |
| MS.gene55246.t1 | AT3G10760 | 54.545 | 55 | 24 | 1 | 15 | 69 | 105 | 158 | 8.55e-13 | 68.9 |
| MS.gene55246.t1 | AT5G05090 | 54.545 | 55 | 24 | 1 | 15 | 69 | 81 | 134 | 9.42e-13 | 68.2 |
| MS.gene55246.t1 | AT3G16857 | 54.545 | 55 | 24 | 1 | 15 | 69 | 167 | 220 | 9.47e-13 | 69.7 |
| MS.gene55246.t1 | AT3G16857 | 54.545 | 55 | 24 | 1 | 15 | 69 | 237 | 290 | 1.09e-12 | 69.7 |
| MS.gene55246.t1 | AT3G46640 | 52.727 | 55 | 25 | 1 | 15 | 69 | 144 | 197 | 1.15e-12 | 68.6 |
| MS.gene55246.t1 | AT3G46640 | 52.727 | 55 | 25 | 1 | 15 | 69 | 144 | 197 | 1.15e-12 | 68.6 |
| MS.gene55246.t1 | AT3G16857 | 54.545 | 55 | 24 | 1 | 15 | 69 | 237 | 290 | 1.16e-12 | 69.7 |
| MS.gene55246.t1 | AT3G46640 | 52.727 | 55 | 25 | 1 | 15 | 69 | 144 | 197 | 1.36e-12 | 68.2 |
| MS.gene55246.t1 | AT1G25550 | 53.448 | 58 | 27 | 0 | 12 | 69 | 206 | 263 | 5.02e-12 | 66.6 |
| MS.gene55246.t1 | AT1G49560 | 58.182 | 55 | 23 | 0 | 15 | 69 | 192 | 246 | 5.42e-12 | 66.6 |
| MS.gene55246.t1 | AT3G25790 | 47.619 | 63 | 33 | 0 | 20 | 82 | 201 | 263 | 9.04e-12 | 65.9 |
| MS.gene55246.t1 | AT1G68670 | 55.172 | 58 | 26 | 0 | 12 | 69 | 212 | 269 | 9.51e-12 | 65.9 |
| MS.gene55246.t1 | AT1G67710 | 45.588 | 68 | 32 | 1 | 17 | 79 | 121 | 188 | 1.94e-11 | 65.5 |
| MS.gene55246.t1 | AT1G67710 | 45.588 | 68 | 32 | 1 | 17 | 79 | 195 | 262 | 2.59e-11 | 65.1 |
| MS.gene55246.t1 | AT1G67710 | 45.588 | 68 | 32 | 1 | 17 | 79 | 130 | 197 | 2.64e-11 | 65.1 |
| MS.gene55246.t1 | AT2G03500 | 50.000 | 58 | 29 | 0 | 12 | 69 | 230 | 287 | 2.82e-11 | 64.7 |
| MS.gene55246.t1 | AT5G45580 | 33.636 | 110 | 67 | 2 | 63 | 166 | 16 | 125 | 3.43e-11 | 62.8 |
| MS.gene55246.t1 | AT5G44190 | 50.000 | 54 | 26 | 1 | 15 | 68 | 147 | 199 | 4.20e-11 | 64.3 |
| MS.gene55246.t1 | AT4G37180 | 50.943 | 53 | 26 | 0 | 17 | 69 | 212 | 264 | 4.38e-11 | 63.9 |
| MS.gene55246.t1 | AT4G37180 | 50.943 | 53 | 26 | 0 | 17 | 69 | 219 | 271 | 4.68e-11 | 63.9 |
| MS.gene55246.t1 | AT5G44190 | 50.000 | 54 | 26 | 1 | 15 | 68 | 147 | 199 | 5.87e-11 | 63.5 |
Find 57 sgRNAs with CRISPR-Local
Find 89 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTACTCAGTGATTTGATTC+TGG | 0.268350 | 5.2:+30948282 | None:intergenic |
| TGGAACTTCTTTGTGTTCAT+TGG | 0.299674 | 5.2:-30947599 | MS.gene55246:CDS |
| ATCACTCTCATAATACTCTT+TGG | 0.312893 | 5.2:+30948809 | None:intergenic |
| TTCACTTGAATTGCCACTAA+TGG | 0.314380 | 5.2:-30947488 | MS.gene55246:CDS |
| CAGAGTAGGTTTCTAGTTGT+TGG | 0.316123 | 5.2:+30948627 | None:intergenic |
| ATGTTGAGAATTATTCATTA+AGG | 0.320144 | 5.2:-30947342 | MS.gene55246:CDS |
| TAATTGCATCAATGAATCTT+TGG | 0.326033 | 5.2:+30948978 | None:intergenic |
| AAACATTCAATAGAAGAAAT+AGG | 0.327972 | 5.2:-30947535 | MS.gene55246:CDS |
| AGTCCATGTCATTCTGATAT+TGG | 0.338286 | 5.2:+30947260 | None:intergenic |
| ATGAATCTTTGGTGAAGTTC+AGG | 0.353886 | 5.2:+30948989 | None:intergenic |
| CCATCTCAAGAGCCATTTAC+AGG | 0.357774 | 5.2:-30948762 | MS.gene55246:intron |
| AATGAAGAAACTAAATTTGA+TGG | 0.358160 | 5.2:-30947370 | MS.gene55246:CDS |
| GGATACAATTCTTCACCAAT+TGG | 0.366004 | 5.2:-30947754 | MS.gene55246:CDS |
| GCATTGTTCATCACAGCTCT+TGG | 0.396519 | 5.2:+30948328 | None:intergenic |
| AAGGCGCAGGAAGCCCTCTC+TGG | 0.407977 | 5.2:-30947775 | MS.gene55246:CDS |
| TTGTTCTTTGTTGTCAGAGT+AGG | 0.427163 | 5.2:+30948613 | None:intergenic |
| AGATGGTACAAAGTAAGTTC+TGG | 0.432362 | 5.2:+30948779 | None:intergenic |
| GCAGCAGAGAATTCAGTCTT+GGG | 0.443647 | 5.2:-30948307 | MS.gene55246:CDS |
| TCAGGAGTCCATTTGAGTCT+TGG | 0.444862 | 5.2:+30949007 | None:intergenic |
| GATTCTGTTAGATCTGAGAT+TGG | 0.449789 | 5.2:+30947664 | None:intergenic |
| ATGCAAAACCAAGACTCAAA+TGG | 0.458131 | 5.2:-30949015 | MS.gene55246:CDS |
| TCTGAGTGCATGGCCATTAG+TGG | 0.458598 | 5.2:+30947475 | None:intergenic |
| AAACTATGAGGAGAGGAAAC+AGG | 0.459208 | 5.2:-30947626 | MS.gene55246:CDS |
| TCATGCTCTAGAAATGCAAA+TGG | 0.465824 | 5.2:-30948138 | MS.gene55246:CDS |
| TGCAGCAGAGAATTCAGTCT+TGG | 0.471008 | 5.2:-30948308 | MS.gene55246:CDS |
| ATTGATGCAATTAATCAACT+TGG | 0.481050 | 5.2:-30948968 | MS.gene55246:CDS |
| GATACAATTCTTCACCAATT+GGG | 0.481549 | 5.2:-30947753 | MS.gene55246:CDS |
| ATCTTCTGAAATCTCAGAAA+GGG | 0.484544 | 5.2:-30947563 | MS.gene55246:CDS |
| AGATCTGAGATTGGAGAACT+TGG | 0.485427 | 5.2:+30947673 | None:intergenic |
| CATCTTCTGAAATCTCAGAA+AGG | 0.495942 | 5.2:-30947564 | MS.gene55246:CDS |
| TTTACAATCGGTACTAATGA+AGG | 0.497419 | 5.2:-30947794 | MS.gene55246:CDS |
| ATTTAAGTAATGAAGTCAAT+GGG | 0.515023 | 5.2:-30947402 | MS.gene55246:CDS |
| AATTTAAGTAATGAAGTCAA+TGG | 0.515931 | 5.2:-30947403 | MS.gene55246:CDS |
| TCAAGGAAAATATTTACAAT+CGG | 0.522599 | 5.2:-30947806 | MS.gene55246:CDS |
| GAAACTTAATGAACAAATTG+AGG | 0.524227 | 5.2:-30948105 | MS.gene55246:intron |
| GATGCAATTAATCAACTTGG+AGG | 0.524466 | 5.2:-30948965 | MS.gene55246:CDS |
| TGATTTCTCTTCTGAGTGCA+TGG | 0.534501 | 5.2:+30947465 | None:intergenic |
| CGAAGCACAGACACAGACAT+TGG | 0.544995 | 5.2:+30947433 | None:intergenic |
| CCTGTAAATGGCTCTTGAGA+TGG | 0.548306 | 5.2:+30948762 | None:intergenic |
| AGGGTTAAGTTTAAACTATG+AGG | 0.556660 | 5.2:-30947638 | MS.gene55246:CDS |
| AAAGAGTATTATGAGAGTGA+TGG | 0.559147 | 5.2:-30948807 | MS.gene55246:CDS |
| AAAAGATGAACTCTCTCAGT+TGG | 0.560309 | 5.2:-30947719 | MS.gene55246:CDS |
| CAGCTTCGAATCGAAGCTCA+AGG | 0.569311 | 5.2:-30947823 | MS.gene55246:CDS |
| TAAGTTTAAACTATGAGGAG+AGG | 0.577698 | 5.2:-30947633 | MS.gene55246:CDS |
| ATCGGTACTAATGAAGGCGC+AGG | 0.585210 | 5.2:-30947788 | MS.gene55246:CDS |
| TGAAGAATTGTATCCAGAGA+GGG | 0.597554 | 5.2:+30947762 | None:intergenic |
| GGTTGTAGAAATATAGACTT+GGG | 0.601442 | 5.2:-30948655 | MS.gene55246:intron |
| GTGAAGAATTGTATCCAGAG+AGG | 0.605279 | 5.2:+30947761 | None:intergenic |
| TGGTTGTAGAAATATAGACT+TGG | 0.620704 | 5.2:-30948656 | MS.gene55246:intron |
| TCAGATCTAACAGAATCAAG+AGG | 0.622910 | 5.2:-30947658 | MS.gene55246:CDS |
| TACTCTGACAACAAAGAACA+AGG | 0.633344 | 5.2:-30948611 | MS.gene55246:intron |
| AAATGCAAATGGAAGTAGAG+AGG | 0.633743 | 5.2:-30948127 | MS.gene55246:CDS |
| CAGATCTAACAGAATCAAGA+GGG | 0.636389 | 5.2:-30947657 | MS.gene55246:CDS |
| GAGGAGAGGAAACAGGACAA+TGG | 0.639420 | 5.2:-30947619 | MS.gene55246:CDS |
| TATTCATTAAGGAAAAGATG+TGG | 0.648508 | 5.2:-30947331 | MS.gene55246:CDS |
| CAGCAGAGAATTCAGTCTTG+GGG | 0.659289 | 5.2:-30948306 | MS.gene55246:CDS |
| TAGCCAATATCAGAATGACA+TGG | 0.678287 | 5.2:-30947263 | MS.gene55246:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATGAAAAAAAAATAGTA+AGG | + | chr5.2:30947349-30947368 | None:intergenic | 10.0% |
| !! | TTAAAATATCATTACAAAAA+AGG | + | chr5.2:30947522-30947541 | None:intergenic | 10.0% |
| !!! | AAAATAATTTTAGATTGAAA+TGG | - | chr5.2:30948036-30948055 | MS.gene55246:intron | 10.0% |
| !!! | GTAATGATATTTTAATTTTT+TGG | - | chr5.2:30947527-30947546 | MS.gene55246:CDS | 10.0% |
| !! | ATTTGAATACATAATGTATT+TGG | + | chr5.2:30948342-30948361 | None:intergenic | 15.0% |
| !! | AAACATTCAATAGAAGAAAT+AGG | - | chr5.2:30948718-30948737 | MS.gene55246:intron | 20.0% |
| !! | AAATAGTATGATTGATCATT+TGG | - | chr5.2:30947862-30947881 | MS.gene55246:intron | 20.0% |
| !! | AAATGATCAATCATACTATT+TGG | + | chr5.2:30947863-30947882 | None:intergenic | 20.0% |
| !! | AATGAAGAAACTAAATTTGA+TGG | - | chr5.2:30948883-30948902 | MS.gene55246:intron | 20.0% |
| !! | AATTTAAGTAATGAAGTCAA+TGG | - | chr5.2:30948850-30948869 | MS.gene55246:intron | 20.0% |
| !! | ATGTTGAGAATTATTCATTA+AGG | - | chr5.2:30948911-30948930 | MS.gene55246:intron | 20.0% |
| !! | ATTTAAGTAATGAAGTCAAT+GGG | - | chr5.2:30948851-30948870 | MS.gene55246:intron | 20.0% |
| !! | TCAAGGAAAATATTTACAAT+CGG | - | chr5.2:30948447-30948466 | MS.gene55246:intron | 20.0% |
| !!! | ACTATTTTTTGCCAAAATTA+CGG | + | chr5.2:30948274-30948293 | None:intergenic | 20.0% |
| !!! | TAAGTACATTTTTTGATTGA+CGG | - | chr5.2:30948221-30948240 | MS.gene55246:intron | 20.0% |
| ! | AAAAAGGTAATACCTGTAAA+TGG | + | chr5.2:30947506-30947525 | None:intergenic | 25.0% |
| ! | ATTGATGCAATTAATCAACT+TGG | - | chr5.2:30947285-30947304 | MS.gene55246:CDS | 25.0% |
| ! | GAAACTTAATGAACAAATTG+AGG | - | chr5.2:30948148-30948167 | MS.gene55246:CDS | 25.0% |
| ! | TAATTGCATCAATGAATCTT+TGG | + | chr5.2:30947278-30947297 | None:intergenic | 25.0% |
| ! | TATTCATTAAGGAAAAGATG+TGG | - | chr5.2:30948922-30948941 | MS.gene55246:intron | 25.0% |
| ! | TCAAATTGTGTATGTTAATG+TGG | - | chr5.2:30947410-30947429 | MS.gene55246:CDS | 25.0% |
| !!! | GACTTTTCATGTTTTTTTAC+TGG | - | chr5.2:30947577-30947596 | MS.gene55246:CDS | 25.0% |
| AGGGTTAAGTTTAAACTATG+AGG | - | chr5.2:30948615-30948634 | MS.gene55246:CDS | 30.0% | |
| ATCACTCTCATAATACTCTT+TGG | + | chr5.2:30947447-30947466 | None:intergenic | 30.0% | |
| ATCATTTGGCATAACATTGA+TGG | - | chr5.2:30947876-30947895 | MS.gene55246:intron | 30.0% | |
| ATTACTCAGTGATTTGATTC+TGG | + | chr5.2:30947974-30947993 | None:intergenic | 30.0% | |
| GATACAATTCTTCACCAATT+GGG | - | chr5.2:30948500-30948519 | MS.gene55246:intron | 30.0% | |
| GGTTGTAGAAATATAGACTT+GGG | - | chr5.2:30947598-30947617 | MS.gene55246:CDS | 30.0% | |
| TAAGTTTAAACTATGAGGAG+AGG | - | chr5.2:30948620-30948639 | MS.gene55246:CDS | 30.0% | |
| TATGCACTAAATGTTGCATA+AGG | - | chr5.2:30948361-30948380 | MS.gene55246:intron | 30.0% | |
| TGGTTGTAGAAATATAGACT+TGG | - | chr5.2:30947597-30947616 | MS.gene55246:CDS | 30.0% | |
| TTTACAATCGGTACTAATGA+AGG | - | chr5.2:30948459-30948478 | MS.gene55246:intron | 30.0% | |
| ! | ACCGTTAATTTGAAATCAGA+CGG | + | chr5.2:30947798-30947817 | None:intergenic | 30.0% |
| !! | AAAGAGTATTATGAGAGTGA+TGG | - | chr5.2:30947446-30947465 | MS.gene55246:CDS | 30.0% |
| !! | ATCTTCTGAAATCTCAGAAA+GGG | - | chr5.2:30948690-30948709 | MS.gene55246:intron | 30.0% |
| !! | TCAATTTGGATGTTGATTTC+AGG | - | chr5.2:30948393-30948412 | MS.gene55246:intron | 30.0% |
| !! | TTTGTGAGTTTTATCCCAAT+TGG | + | chr5.2:30948517-30948536 | None:intergenic | 30.0% |
| !!! | TTTTGTTTTTGCCAGAAACA+TGG | - | chr5.2:30948085-30948104 | MS.gene55246:intron | 30.0% |
| AAAAGATGAACTCTCTCAGT+TGG | - | chr5.2:30948534-30948553 | MS.gene55246:intron | 35.0% | |
| AAATGCAAATGGAAGTAGAG+AGG | - | chr5.2:30948126-30948145 | MS.gene55246:CDS | 35.0% | |
| ACCATCTCGTATCAAAATAG+TGG | - | chr5.2:30947725-30947744 | MS.gene55246:CDS | 35.0% | |
| AGATGGTACAAAGTAAGTTC+TGG | + | chr5.2:30947477-30947496 | None:intergenic | 35.0% | |
| AGTCCATGTCATTCTGATAT+TGG | + | chr5.2:30948996-30949015 | None:intergenic | 35.0% | |
| ATGAATCTTTGGTGAAGTTC+AGG | + | chr5.2:30947267-30947286 | None:intergenic | 35.0% | |
| ATGAGATATCTCCATGTTTC+TGG | + | chr5.2:30948099-30948118 | None:intergenic | 35.0% | |
| ATGCAAAACCAAGACTCAAA+TGG | - | chr5.2:30947238-30947257 | MS.gene55246:CDS | 35.0% | |
| CAGATCTAACAGAATCAAGA+GGG | - | chr5.2:30948596-30948615 | MS.gene55246:intron | 35.0% | |
| GATGCAATTAATCAACTTGG+AGG | - | chr5.2:30947288-30947307 | MS.gene55246:CDS | 35.0% | |
| GCCGTCTGATTTCAAATTAA+CGG | - | chr5.2:30947794-30947813 | MS.gene55246:CDS | 35.0% | |
| GGATACAATTCTTCACCAAT+TGG | - | chr5.2:30948499-30948518 | MS.gene55246:intron | 35.0% | |
| TACTCTGACAACAAAGAACA+AGG | - | chr5.2:30947642-30947661 | MS.gene55246:CDS | 35.0% | |
| TAGCCAATATCAGAATGACA+TGG | - | chr5.2:30948990-30949009 | MS.gene55246:CDS | 35.0% | |
| TCAGATCTAACAGAATCAAG+AGG | - | chr5.2:30948595-30948614 | MS.gene55246:intron | 35.0% | |
| TGAAGAATTGTATCCAGAGA+GGG | + | chr5.2:30948494-30948513 | None:intergenic | 35.0% | |
| TGGAACTTCTTTGTGTTCAT+TGG | - | chr5.2:30948654-30948673 | MS.gene55246:intron | 35.0% | |
| TTCACTTGAATTGCCACTAA+TGG | - | chr5.2:30948765-30948784 | MS.gene55246:CDS | 35.0% | |
| ! | AGAACAAGGTAATGACTTGT+AGG | - | chr5.2:30947656-30947675 | MS.gene55246:CDS | 35.0% |
| ! | GAACAAGGTAATGACTTGTA+GGG | - | chr5.2:30947657-30947676 | MS.gene55246:CDS | 35.0% |
| ! | GATTCTGTTAGATCTGAGAT+TGG | + | chr5.2:30948592-30948611 | None:intergenic | 35.0% |
| ! | TAAGGACGTGTTGATCAATT+TGG | - | chr5.2:30948379-30948398 | MS.gene55246:intron | 35.0% |
| ! | TGTATTTGGTGAAATCACAG+TGG | + | chr5.2:30948328-30948347 | None:intergenic | 35.0% |
| ! | TTGTTCTTTGTTGTCAGAGT+AGG | + | chr5.2:30947643-30947662 | None:intergenic | 35.0% |
| !! | CATAACATTGATGGTCCTTT+TGG | - | chr5.2:30947885-30947904 | MS.gene55246:intron | 35.0% |
| !! | CATCTTCTGAAATCTCAGAA+AGG | - | chr5.2:30948689-30948708 | MS.gene55246:intron | 35.0% |
| !! | TCATGCTCTAGAAATGCAAA+TGG | - | chr5.2:30948115-30948134 | MS.gene55246:CDS | 35.0% |
| !! | TTTTTGATTGACGGTGAGTT+TGG | - | chr5.2:30948230-30948249 | MS.gene55246:intron | 35.0% |
| !!! | ACCACTATTTTGATACGAGA+TGG | + | chr5.2:30947729-30947748 | None:intergenic | 35.0% |
| AAACTATGAGGAGAGGAAAC+AGG | - | chr5.2:30948627-30948646 | MS.gene55246:CDS | 40.0% | |
| GTGAAGAATTGTATCCAGAG+AGG | + | chr5.2:30948495-30948514 | None:intergenic | 40.0% | |
| TGATTTCTCTTCTGAGTGCA+TGG | + | chr5.2:30948791-30948810 | None:intergenic | 40.0% | |
| ! | AGATCTGAGATTGGAGAACT+TGG | + | chr5.2:30948583-30948602 | None:intergenic | 40.0% |
| ! | ATGGTGTGCTACCGTAATTT+TGG | - | chr5.2:30948260-30948279 | MS.gene55246:intron | 40.0% |
| !! | CAGAGTAGGTTTCTAGTTGT+TGG | + | chr5.2:30947629-30947648 | None:intergenic | 40.0% |
| CAGCAGAGAATTCAGTCTTG+GGG | - | chr5.2:30947947-30947966 | MS.gene55246:intron | 45.0% | |
| CCATCTCAAGAGCCATTTAC+AGG | - | chr5.2:30947491-30947510 | MS.gene55246:CDS | 45.0% | |
| CCTGTAAATGGCTCTTGAGA+TGG | + | chr5.2:30947494-30947513 | None:intergenic | 45.0% | |
| CGGTGAGTTTGGTAGAATCA+TGG | - | chr5.2:30948241-30948260 | MS.gene55246:intron | 45.0% | |
| GCAGCAGAGAATTCAGTCTT+GGG | - | chr5.2:30947946-30947965 | MS.gene55246:intron | 45.0% | |
| GCATTGTTCATCACAGCTCT+TGG | + | chr5.2:30947928-30947947 | None:intergenic | 45.0% | |
| TCAGGAGTCCATTTGAGTCT+TGG | + | chr5.2:30947249-30947268 | None:intergenic | 45.0% | |
| TCTGTGTACACTGCACCAAA+AGG | + | chr5.2:30947903-30947922 | None:intergenic | 45.0% | |
| TGCAGCAGAGAATTCAGTCT+TGG | - | chr5.2:30947945-30947964 | MS.gene55246:intron | 45.0% | |
| !!! | GAGTCTTGGTTTTGCATCAG+TGG | + | chr5.2:30947235-30947254 | None:intergenic | 45.0% |
| CAGCTTCGAATCGAAGCTCA+AGG | - | chr5.2:30948430-30948449 | MS.gene55246:intron | 50.0% | |
| CGAAGCACAGACACAGACAT+TGG | + | chr5.2:30948823-30948842 | None:intergenic | 50.0% | |
| GAGGAGAGGAAACAGGACAA+TGG | - | chr5.2:30948634-30948653 | MS.gene55246:CDS | 50.0% | |
| TCTGAGTGCATGGCCATTAG+TGG | + | chr5.2:30948781-30948800 | None:intergenic | 50.0% | |
| ! | ATCGGTACTAATGAAGGCGC+AGG | - | chr5.2:30948465-30948484 | MS.gene55246:intron | 50.0% |
| AAGGCGCAGGAAGCCCTCTC+TGG | - | chr5.2:30948478-30948497 | MS.gene55246:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 30947201 | 30949074 | 30947201 | ID=MS.gene55246 |
| chr5.2 | mRNA | 30947201 | 30949074 | 30947201 | ID=MS.gene55246.t1;Parent=MS.gene55246 |
| chr5.2 | exon | 30948957 | 30949074 | 30948957 | ID=MS.gene55246.t1.exon1;Parent=MS.gene55246.t1 |
| chr5.2 | CDS | 30948957 | 30949074 | 30948957 | ID=cds.MS.gene55246.t1;Parent=MS.gene55246.t1 |
| chr5.2 | exon | 30948763 | 30948839 | 30948763 | ID=MS.gene55246.t1.exon2;Parent=MS.gene55246.t1 |
| chr5.2 | CDS | 30948763 | 30948839 | 30948763 | ID=cds.MS.gene55246.t1;Parent=MS.gene55246.t1 |
| chr5.2 | exon | 30948612 | 30948669 | 30948612 | ID=MS.gene55246.t1.exon3;Parent=MS.gene55246.t1 |
| chr5.2 | CDS | 30948612 | 30948669 | 30948612 | ID=cds.MS.gene55246.t1;Parent=MS.gene55246.t1 |
| chr5.2 | exon | 30948287 | 30948362 | 30948287 | ID=MS.gene55246.t1.exon4;Parent=MS.gene55246.t1 |
| chr5.2 | CDS | 30948287 | 30948362 | 30948287 | ID=cds.MS.gene55246.t1;Parent=MS.gene55246.t1 |
| chr5.2 | exon | 30948106 | 30948175 | 30948106 | ID=MS.gene55246.t1.exon5;Parent=MS.gene55246.t1 |
| chr5.2 | CDS | 30948106 | 30948175 | 30948106 | ID=cds.MS.gene55246.t1;Parent=MS.gene55246.t1 |
| chr5.2 | exon | 30947201 | 30947860 | 30947201 | ID=MS.gene55246.t1.exon6;Parent=MS.gene55246.t1 |
| chr5.2 | CDS | 30947201 | 30947860 | 30947201 | ID=cds.MS.gene55246.t1;Parent=MS.gene55246.t1 |
| Gene Sequence |
| Protein sequence |
