Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55705.t1 | XP_003588525.2 | 96.8 | 284 | 8 | 1 | 1 | 284 | 1 | 283 | 3.20E-109 | 404.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55705.t1 | Q9LV09 | 63.1 | 298 | 90 | 3 | 1 | 284 | 1 | 292 | 1.4e-73 | 277.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55705.t1 | G7I4A8 | 96.8 | 284 | 8 | 1 | 1 | 284 | 1 | 283 | 2.3e-109 | 404.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049283 | MS.gene55705 | 0.805265 | 1.45E-49 | -1.69E-46 |
| MS.gene049411 | MS.gene55705 | 0.835842 | 1.33E-56 | -1.69E-46 |
| MS.gene050084 | MS.gene55705 | 0.843933 | 1.03E-58 | -1.69E-46 |
| MS.gene050085 | MS.gene55705 | 0.869223 | 3.64E-66 | -1.69E-46 |
| MS.gene050359 | MS.gene55705 | 0.806044 | 9.96E-50 | -1.69E-46 |
| MS.gene050386 | MS.gene55705 | 0.807793 | 4.25E-50 | -1.69E-46 |
| MS.gene050646 | MS.gene55705 | 0.809758 | 1.62E-50 | -1.69E-46 |
| MS.gene050689 | MS.gene55705 | 0.816854 | 4.46E-52 | -1.69E-46 |
| MS.gene050838 | MS.gene55705 | 0.8259 | 3.64E-54 | -1.69E-46 |
| MS.gene050945 | MS.gene55705 | 0.878271 | 3.21E-69 | -1.69E-46 |
| MS.gene051003 | MS.gene55705 | 0.880158 | 6.91E-70 | -1.69E-46 |
| MS.gene051233 | MS.gene55705 | 0.810731 | 9.96E-51 | -1.69E-46 |
| MS.gene051234 | MS.gene55705 | 0.871705 | 5.57E-67 | -1.69E-46 |
| MS.gene051343 | MS.gene55705 | 0.879954 | 8.17E-70 | -1.69E-46 |
| MS.gene051381 | MS.gene55705 | 0.817342 | 3.47E-52 | -1.69E-46 |
| MS.gene051642 | MS.gene55705 | 0.801924 | 7.16E-49 | -1.69E-46 |
| MS.gene05188 | MS.gene55705 | 0.806813 | 6.85E-50 | -1.69E-46 |
| MS.gene051975 | MS.gene55705 | 0.83202 | 1.20E-55 | -1.69E-46 |
| MS.gene052072 | MS.gene55705 | 0.859474 | 4.04E-63 | -1.69E-46 |
| MS.gene052307 | MS.gene55705 | 0.800375 | 1.48E-48 | -1.69E-46 |
| MS.gene052342 | MS.gene55705 | 0.803208 | 3.89E-49 | -1.69E-46 |
| MS.gene053058 | MS.gene55705 | 0.871012 | 9.45E-67 | -1.69E-46 |
| MS.gene053143 | MS.gene55705 | 0.80358 | 3.26E-49 | -1.69E-46 |
| MS.gene054004 | MS.gene55705 | 0.854479 | 1.20E-61 | -1.69E-46 |
| MS.gene054413 | MS.gene55705 | 0.830065 | 3.62E-55 | -1.69E-46 |
| MS.gene055513 | MS.gene55705 | 0.802138 | 6.47E-49 | -1.69E-46 |
| MS.gene056097 | MS.gene55705 | 0.817495 | 3.20E-52 | -1.69E-46 |
| MS.gene056181 | MS.gene55705 | 0.831452 | 1.66E-55 | -1.69E-46 |
| MS.gene05781 | MS.gene55705 | 0.808685 | 2.74E-50 | -1.69E-46 |
| MS.gene058054 | MS.gene55705 | 0.804118 | 2.52E-49 | -1.69E-46 |
| MS.gene058292 | MS.gene55705 | 0.814479 | 1.51E-51 | -1.69E-46 |
| MS.gene058976 | MS.gene55705 | 0.807251 | 5.54E-50 | -1.69E-46 |
| MS.gene059007 | MS.gene55705 | 0.810262 | 1.26E-50 | -1.69E-46 |
| MS.gene059146 | MS.gene55705 | 0.967754 | 1.03E-127 | -1.69E-46 |
| MS.gene059802 | MS.gene55705 | 0.803767 | 2.98E-49 | -1.69E-46 |
| MS.gene060763 | MS.gene55705 | 0.83652 | 8.92E-57 | -1.69E-46 |
| MS.gene060933 | MS.gene55705 | 0.805268 | 1.45E-49 | -1.69E-46 |
| MS.gene060935 | MS.gene55705 | 0.810787 | 9.69E-51 | -1.69E-46 |
| MS.gene060937 | MS.gene55705 | 0.825282 | 5.10E-54 | -1.69E-46 |
| MS.gene061100 | MS.gene55705 | 0.81889 | 1.55E-52 | -1.69E-46 |
| MS.gene061160 | MS.gene55705 | 0.818595 | 1.81E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55705.t1 | MTR_1g008200 | 97.535 | 284 | 6 | 1 | 1 | 284 | 1 | 283 | 0.0 | 563 |
| MS.gene55705.t1 | MTR_1g008195 | 82.807 | 285 | 41 | 3 | 1 | 284 | 1 | 278 | 3.69e-149 | 419 |
| MS.gene55705.t1 | MTR_1g008170 | 79.861 | 288 | 44 | 3 | 1 | 284 | 1 | 278 | 6.24e-146 | 411 |
| MS.gene55705.t1 | MTR_6g065550 | 75.397 | 126 | 19 | 3 | 10 | 134 | 50 | 164 | 5.18e-37 | 129 |
| MS.gene55705.t1 | MTR_3g463620 | 30.097 | 103 | 71 | 1 | 139 | 241 | 49 | 150 | 9.21e-15 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55705.t1 | AT5G53400 | 58.545 | 275 | 98 | 2 | 25 | 284 | 19 | 292 | 1.19e-106 | 312 |
| MS.gene55705.t1 | AT4G27890 | 55.822 | 292 | 110 | 6 | 1 | 284 | 1 | 281 | 9.92e-102 | 299 |
| MS.gene55705.t1 | AT5G58740 | 29.126 | 103 | 72 | 1 | 139 | 241 | 21 | 122 | 5.16e-13 | 65.9 |
Find 72 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCATGATTTCCTGTTTC+TGG | 0.058297 | 1.3:+11599044 | None:intergenic |
| TAAAAGCTTACATCAATAAT+TGG | 0.250303 | 1.3:+11599973 | None:intergenic |
| ATGAGGTTTGGGTTTCTTCT+TGG | 0.317575 | 1.3:+11601592 | None:intergenic |
| TGATCAGAGGCAGAAGTCTA+TGG | 0.321181 | 1.3:-11599089 | MS.gene55705:CDS |
| TTCTGGAGCTCCTCACTTGT+TGG | 0.356328 | 1.3:+11599061 | None:intergenic |
| TTGGGTTTCTTCTTGGTAAT+CGG | 0.361888 | 1.3:+11601599 | None:intergenic |
| TCAAGCCTGATGAATGTTAC+TGG | 0.367377 | 1.3:-11599764 | MS.gene55705:CDS |
| ATCCATACCATTACCCTGAT+TGG | 0.375160 | 1.3:+11600131 | None:intergenic |
| AGCAGCAATCTTAGCTTTCT+CGG | 0.384597 | 1.3:+11601371 | None:intergenic |
| CGAATCATTGTCGAAGAAAT+CGG | 0.389616 | 1.3:+11601458 | None:intergenic |
| TTGATGGACAGTTCCCAATC+AGG | 0.395904 | 1.3:-11600145 | MS.gene55705:intron |
| TCAACAGTCTGTCGAGTCTC+AGG | 0.400798 | 1.3:+11599423 | None:intergenic |
| TCACCAAGTTTGCTGCTCTC+AGG | 0.401717 | 1.3:+11599453 | None:intergenic |
| GTTGAGAAGAAGATGAGGTT+TGG | 0.402027 | 1.3:+11601580 | None:intergenic |
| AGAAAAGCGGTTGGATTTGA+AGG | 0.414688 | 1.3:+11601516 | None:intergenic |
| TGGATCTGGAGAAATATTCT+TGG | 0.418168 | 1.3:-11600113 | MS.gene55705:CDS |
| CATGAAGAAATTTATGAGTC+AGG | 0.419859 | 1.3:-11599029 | None:intergenic |
| GATGGAGAAAGTGGCTTAGC+AGG | 0.426627 | 1.3:-11601255 | MS.gene55705:intron |
| TTTAACCAAGCATGATCAAA+TGG | 0.428418 | 1.3:-11599532 | MS.gene55705:CDS |
| GAGAAGAAGGATGGAGAAAG+TGG | 0.429003 | 1.3:-11601264 | MS.gene55705:CDS |
| AAGTGAGGAGCTCCAGAAAC+AGG | 0.431963 | 1.3:-11599056 | MS.gene55705:CDS |
| TTGAGAAGAAGATGAGGTTT+GGG | 0.435475 | 1.3:+11601581 | None:intergenic |
| CATCTAAAAGTTGGAATCAA+AGG | 0.443557 | 1.3:-11600003 | MS.gene55705:CDS |
| GAACCTGAGAGCAGCAAACT+TGG | 0.444776 | 1.3:-11599456 | MS.gene55705:CDS |
| CCAGTCCATTTGATCATGCT+TGG | 0.448786 | 1.3:+11599527 | None:intergenic |
| AAGAAGAACCATCTAAAAGT+TGG | 0.449134 | 1.3:-11600012 | MS.gene55705:CDS |
| TGAGAAGGAAGATGAGAAGA+AGG | 0.450742 | 1.3:-11601277 | MS.gene55705:CDS |
| CGATTTCTTCGACAATGATT+CGG | 0.451771 | 1.3:-11601457 | MS.gene55705:CDS |
| AGCTATGGAGGTAGATGAGA+AGG | 0.453896 | 1.3:-11601292 | MS.gene55705:CDS |
| TCAGGGTAATGGTATGGATC+TGG | 0.458750 | 1.3:-11600127 | MS.gene55705:CDS |
| GGCGGCTGCTGTTGCTGCGG+CGG | 0.461162 | 1.3:-11601322 | MS.gene55705:CDS |
| AAGGAAGATGAGAAGAAGGA+TGG | 0.482846 | 1.3:-11601273 | MS.gene55705:CDS |
| AAGGTGGAAGAGAACGGAAT+AGG | 0.487694 | 1.3:+11601543 | None:intergenic |
| TCCATACCATTACCCTGATT+GGG | 0.488514 | 1.3:+11600132 | None:intergenic |
| ATGCTCCAGTAACATTCATC+AGG | 0.490196 | 1.3:+11599759 | None:intergenic |
| CGACAATGATTCGGCTGAGA+AGG | 0.493721 | 1.3:-11601448 | MS.gene55705:CDS |
| ATCTAAAAGTTGGAATCAAA+GGG | 0.502699 | 1.3:-11600002 | MS.gene55705:CDS |
| GGAGCTCCTCACTTGTTGGA+AGG | 0.509413 | 1.3:+11599065 | None:intergenic |
| TGGTGGAAATGTCTTGTTAA+GGG | 0.518276 | 1.3:-11599507 | MS.gene55705:CDS |
| TCCCAATCAGGGTAATGGTA+TGG | 0.518546 | 1.3:-11600133 | MS.gene55705:CDS |
| AGAGAAGGCGAAGGTTGATA+AGG | 0.527997 | 1.3:-11601346 | MS.gene55705:CDS |
| TCTGTCGAGTCTCAGGATCC+AGG | 0.530996 | 1.3:+11599430 | None:intergenic |
| ATCCGCCGTTCGCGCTGTGA+AGG | 0.537892 | 1.3:-11601418 | MS.gene55705:CDS |
| GTGAATGTTCCAGTGCCAAA+TGG | 0.540930 | 1.3:-11600066 | MS.gene55705:CDS |
| TGATGGACAGTTCCCAATCA+GGG | 0.541528 | 1.3:-11600144 | MS.gene55705:intron |
| TGCCAAATGGAACAAAATCA+AGG | 0.549463 | 1.3:-11600053 | MS.gene55705:CDS |
| GAGCAGCAAACTTGGTGACC+TGG | 0.549952 | 1.3:-11599448 | MS.gene55705:CDS |
| AAGCTTACATCAATAATTGG+TGG | 0.551582 | 1.3:+11599976 | None:intergenic |
| ACAGTTCCCAATCAGGGTAA+TGG | 0.556894 | 1.3:-11600138 | MS.gene55705:intron |
| GATCAGAGGCAGAAGTCTAT+GGG | 0.558052 | 1.3:-11599088 | MS.gene55705:CDS |
| GATGAATGTTACTGGAGCAT+AGG | 0.561295 | 1.3:-11599756 | MS.gene55705:intron |
| CAATGATTCGGCTGAGAAGG+TGG | 0.562539 | 1.3:-11601445 | MS.gene55705:CDS |
| CTGGTGGAAATGTCTTGTTA+AGG | 0.563095 | 1.3:-11599508 | MS.gene55705:CDS |
| TAAGATTGCTGCTGAAGAGA+AGG | 0.565303 | 1.3:-11601361 | MS.gene55705:CDS |
| GGCGGCGGCTGCTGTTGCTG+CGG | 0.565880 | 1.3:-11601325 | MS.gene55705:CDS |
| TGTATTCGACTTCATCGCTA+AGG | 0.567639 | 1.3:-11601487 | MS.gene55705:CDS |
| ACAGACTGTTGAAAAGATGA+TGG | 0.576647 | 1.3:-11599412 | MS.gene55705:intron |
| AGCATGATCAAATGGACTGG+TGG | 0.576780 | 1.3:-11599524 | MS.gene55705:CDS |
| TGGATTTGAAGGATCGAAGG+TGG | 0.582135 | 1.3:+11601527 | None:intergenic |
| TTCTTTAACAGTTTGATCAG+AGG | 0.586849 | 1.3:-11599102 | MS.gene55705:intron |
| CCAAGCATGATCAAATGGAC+TGG | 0.599013 | 1.3:-11599527 | MS.gene55705:CDS |
| GGCGAAGGTTGATAAGGCGG+CGG | 0.599571 | 1.3:-11601340 | MS.gene55705:CDS |
| GGATCGAAGGTGGAAGAGAA+CGG | 0.602076 | 1.3:+11601537 | None:intergenic |
| GGTTGGATTTGAAGGATCGA+AGG | 0.613022 | 1.3:+11601524 | None:intergenic |
| TACCTTCACAGCGCGAACGG+CGG | 0.622007 | 1.3:+11601416 | None:intergenic |
| CTTTACCTTCACAGCGCGAA+CGG | 0.628341 | 1.3:+11601413 | None:intergenic |
| TGCTGCTGAAGAGAAGGCGA+AGG | 0.633806 | 1.3:-11601355 | MS.gene55705:CDS |
| GAAGGCGAAGGTTGATAAGG+CGG | 0.663476 | 1.3:-11601343 | MS.gene55705:CDS |
| TGTGAAGGTAAAGAAAGCTA+AGG | 0.664999 | 1.3:-11601403 | MS.gene55705:CDS |
| TGCGGCGGAGAAGAAAGCTA+TGG | 0.665095 | 1.3:-11601307 | MS.gene55705:CDS |
| TATGGGCCTTCCAACAAGTG+AGG | 0.673276 | 1.3:-11599071 | MS.gene55705:CDS |
| GGCGGAGAAGAAAGCTATGG+AGG | 0.684045 | 1.3:-11601304 | MS.gene55705:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGAAATAAAAAAAAACTA+GGG | + | chr1.3:11599453-11599472 | None:intergenic | 10.0% |
| !! | TAAAGAAATAAAAAAAAACT+AGG | + | chr1.3:11599454-11599473 | None:intergenic | 10.0% |
| !! | AAAAAATTCAGATATATAGT+TGG | + | chr1.3:11600442-11600461 | None:intergenic | 15.0% |
| !! | ATTGTAAATTATCAAAATGA+TGG | - | chr1.3:11600316-11600335 | MS.gene55705:intron | 15.0% |
| !! | TTGATTGTTTATTAAATCTA+TGG | - | chr1.3:11599852-11599871 | MS.gene55705:intron | 15.0% |
| !!! | ATTATTTTAAAATTTCTCAG+GGG | - | chr1.3:11600839-11600858 | MS.gene55705:intron | 15.0% |
| !!! | CATTATTTTAAAATTTCTCA+GGG | - | chr1.3:11600838-11600857 | MS.gene55705:intron | 15.0% |
| !!! | TCATTATTTTAAAATTTCTC+AGG | - | chr1.3:11600837-11600856 | MS.gene55705:intron | 15.0% |
| !!! | TTTTAAACTTGTGAAAATTT+TGG | - | chr1.3:11600989-11601008 | MS.gene55705:intron | 15.0% |
| !! | GAAATTTATGAGATAACAAT+GGG | - | chr1.3:11599542-11599561 | MS.gene55705:CDS | 20.0% |
| !! | TAAAAGCTTACATCAATAAT+TGG | + | chr1.3:11600672-11600691 | None:intergenic | 20.0% |
| !! | TGAAATTTATGAGATAACAA+TGG | - | chr1.3:11599541-11599560 | MS.gene55705:CDS | 20.0% |
| !! | TTAAAATAATGAATCAGCAA+AGG | + | chr1.3:11600829-11600848 | None:intergenic | 20.0% |
| !! | TTTAACTATTCATTAGCTAA+TGG | - | chr1.3:11600389-11600408 | MS.gene55705:intron | 20.0% |
| !!! | AAATTATCAAAATGATGGAA+TGG | - | chr1.3:11600321-11600340 | MS.gene55705:intron | 20.0% |
| !!! | AGATTTAAATAACACTGTTT+TGG | - | chr1.3:11601474-11601493 | MS.gene55705:CDS | 20.0% |
| !!! | ATCTATATCACAAAGATTTT+CGG | - | chr1.3:11600085-11600104 | MS.gene55705:CDS | 20.0% |
| !!! | TACTTAATATAACTTGCATT+TGG | - | chr1.3:11601287-11601306 | MS.gene55705:CDS | 20.0% |
| !!! | TATGTATCTATTCTTTTGTT+GGG | - | chr1.3:11601358-11601377 | MS.gene55705:CDS | 20.0% |
| !!! | TTATTTTAAAATTTCTCAGG+GGG | - | chr1.3:11600840-11600859 | MS.gene55705:intron | 20.0% |
| ! | ATAATCGAATAGAGATAACT+TGG | - | chr1.3:11601419-11601438 | MS.gene55705:CDS | 25.0% |
| ! | ATAATTCATTAGGATCATGA+TGG | - | chr1.3:11600957-11600976 | MS.gene55705:intron | 25.0% |
| ! | ATCAAACTGTTAAAGAATAC+AGG | + | chr1.3:11601537-11601556 | None:intergenic | 25.0% |
| ! | ATCATGATCCTAATGAATTA+TGG | + | chr1.3:11600958-11600977 | None:intergenic | 25.0% |
| ! | ATCTAAAAGTTGGAATCAAA+GGG | - | chr1.3:11600640-11600659 | MS.gene55705:intron | 25.0% |
| ! | GAAAATCTTTGTGATATAGA+TGG | + | chr1.3:11600086-11600105 | None:intergenic | 25.0% |
| ! | GAATTATGGTCACTTAAAAA+GGG | + | chr1.3:11600944-11600963 | None:intergenic | 25.0% |
| ! | GTTTCTATTACCAAAAAATG+TGG | + | chr1.3:11600051-11600070 | None:intergenic | 25.0% |
| ! | TAAATATGCCAAAATTGCTA+GGG | - | chr1.3:11599716-11599735 | MS.gene55705:intron | 25.0% |
| ! | TAGATGATAAACCAATGATA+AGG | - | chr1.3:11599898-11599917 | MS.gene55705:intron | 25.0% |
| ! | TCAAACAAACTAAAAATTCC+AGG | + | chr1.3:11600793-11600812 | None:intergenic | 25.0% |
| ! | TCAAACTGTTAAAGAATACA+GGG | + | chr1.3:11601536-11601555 | None:intergenic | 25.0% |
| ! | TGAATTATGGTCACTTAAAA+AGG | + | chr1.3:11600945-11600964 | None:intergenic | 25.0% |
| ! | TGTATCATATTGTATTGCTA+TGG | - | chr1.3:11599612-11599631 | MS.gene55705:intron | 25.0% |
| ! | TTAAATATGCCAAAATTGCT+AGG | - | chr1.3:11599715-11599734 | MS.gene55705:intron | 25.0% |
| ! | TTAAGTGACCATAATTCATT+AGG | - | chr1.3:11600947-11600966 | MS.gene55705:intron | 25.0% |
| !! | ACACTCAATGCTTAAAATTT+TGG | + | chr1.3:11599960-11599979 | None:intergenic | 25.0% |
| !! | CACTCAATGCTTAAAATTTT+GGG | + | chr1.3:11599959-11599978 | None:intergenic | 25.0% |
| !! | GTATGTATCTATTCTTTTGT+TGG | - | chr1.3:11601357-11601376 | MS.gene55705:CDS | 25.0% |
| !!! | TATGCATATACCACATTTTT+TGG | - | chr1.3:11600038-11600057 | MS.gene55705:CDS | 25.0% |
| !!! | TTTAAAACCTATTTTTGCAG+AGG | - | chr1.3:11601065-11601084 | MS.gene55705:intron | 25.0% |
| AAAATGTGGTATATGCATAG+TGG | + | chr1.3:11600037-11600056 | None:intergenic | 30.0% | |
| AAACACAATCAAATCAGAGA+GGG | + | chr1.3:11600272-11600291 | None:intergenic | 30.0% | |
| AAATATGCCAAAATTGCTAG+GGG | - | chr1.3:11599717-11599736 | MS.gene55705:intron | 30.0% | |
| AAGAAGAACCATCTAAAAGT+TGG | - | chr1.3:11600630-11600649 | MS.gene55705:intron | 30.0% | |
| AAGCTTACATCAATAATTGG+TGG | + | chr1.3:11600669-11600688 | None:intergenic | 30.0% | |
| CATCTAAAAGTTGGAATCAA+AGG | - | chr1.3:11600639-11600658 | MS.gene55705:intron | 30.0% | |
| GATACATACTTAAATGCAAC+AGG | + | chr1.3:11601346-11601365 | None:intergenic | 30.0% | |
| GATGAAATGACAATAATCAC+CGG | + | chr1.3:11599774-11599793 | None:intergenic | 30.0% | |
| TTCTTTAACAGTTTGATCAG+AGG | - | chr1.3:11601540-11601559 | MS.gene55705:CDS | 30.0% | |
| TTTAACCAAGCATGATCAAA+TGG | - | chr1.3:11601110-11601129 | MS.gene55705:intron | 30.0% | |
| ! | AACCTTGATTTTGTTCCATT+TGG | + | chr1.3:11600594-11600613 | None:intergenic | 30.0% |
| ! | AAGATGACATTCTAGTTGAA+TGG | - | chr1.3:11601393-11601412 | MS.gene55705:CDS | 30.0% |
| ! | CTTTGATTCCAACTTTTAGA+TGG | + | chr1.3:11600641-11600660 | None:intergenic | 30.0% |
| ! | TACATCTTTGCTCTTTTTGA+TGG | - | chr1.3:11600481-11600500 | MS.gene55705:intron | 30.0% |
| ! | TTTGCTATGAACATTGTGTT+GGG | - | chr1.3:11599512-11599531 | MS.gene55705:CDS | 30.0% |
| ! | TTTGTGATATAGATGGACTT+AGG | + | chr1.3:11600079-11600098 | None:intergenic | 30.0% |
| !! | ATAACACTGTTTTGGATTTG+AGG | - | chr1.3:11601482-11601501 | MS.gene55705:CDS | 30.0% |
| !! | GAATACATTTTCGAGAAAAG+CGG | + | chr1.3:11599142-11599161 | None:intergenic | 30.0% |
| !! | GCAATTTTGGCATATTTAAC+CGG | + | chr1.3:11599714-11599733 | None:intergenic | 30.0% |
| !!! | ACTTTTTGGGTGTTAATTTC+AGG | + | chr1.3:11601165-11601184 | None:intergenic | 30.0% |
| ACAGACTGTTGAAAAGATGA+TGG | - | chr1.3:11601230-11601249 | MS.gene55705:intron | 35.0% | |
| AGAGTCTTCTGATTGTAACT+AGG | - | chr1.3:11601015-11601034 | MS.gene55705:intron | 35.0% | |
| ATAACACAAACAAGTGTCAC+TGG | + | chr1.3:11600732-11600751 | None:intergenic | 35.0% | |
| CAAACACAATCAAATCAGAG+AGG | + | chr1.3:11600273-11600292 | None:intergenic | 35.0% | |
| CAACAGTAACTGCTATAACT+TGG | + | chr1.3:11600695-11600714 | None:intergenic | 35.0% | |
| CGAATCATTGTCGAAGAAAT+CGG | + | chr1.3:11599187-11599206 | None:intergenic | 35.0% | |
| CGATTTCTTCGACAATGATT+CGG | - | chr1.3:11599185-11599204 | MS.gene55705:intron | 35.0% | |
| TCTTCATGATTTCCTGTTTC+TGG | + | chr1.3:11601601-11601620 | None:intergenic | 35.0% | |
| TGCCAAATGGAACAAAATCA+AGG | - | chr1.3:11600589-11600608 | MS.gene55705:intron | 35.0% | |
| TGGATCTGGAGAAATATTCT+TGG | - | chr1.3:11600529-11600548 | MS.gene55705:intron | 35.0% | |
| TGTGAAGGTAAAGAAAGCTA+AGG | - | chr1.3:11599239-11599258 | MS.gene55705:intron | 35.0% | |
| TTGAGAAGAAGATGAGGTTT+GGG | + | chr1.3:11599064-11599083 | None:intergenic | 35.0% | |
| ! | CTCTCTGATTTGATTGTGTT+TGG | - | chr1.3:11600271-11600290 | MS.gene55705:intron | 35.0% |
| ! | GTTTAAACCCCTAGCAATTT+TGG | + | chr1.3:11599727-11599746 | None:intergenic | 35.0% |
| ! | TGGTGGAAATGTCTTGTTAA+GGG | - | chr1.3:11601135-11601154 | MS.gene55705:intron | 35.0% |
| ! | TTGGGTTTCTTCTTGGTAAT+CGG | + | chr1.3:11599046-11599065 | None:intergenic | 35.0% |
| !! | GTTTGCTATGAACATTGTGT+TGG | - | chr1.3:11599511-11599530 | MS.gene55705:CDS | 35.0% |
| !! | TTTTGGTTGAGAAGAAGATG+AGG | + | chr1.3:11599070-11599089 | None:intergenic | 35.0% |
| AAGGAAGATGAGAAGAAGGA+TGG | - | chr1.3:11599369-11599388 | MS.gene55705:intron | 40.0% | |
| AATTCCAGGCTAAAGACAGA+AGG | + | chr1.3:11600779-11600798 | None:intergenic | 40.0% | |
| AGAAAAGCGGTTGGATTTGA+AGG | + | chr1.3:11599129-11599148 | None:intergenic | 40.0% | |
| ATCCATACCATTACCCTGAT+TGG | + | chr1.3:11600514-11600533 | None:intergenic | 40.0% | |
| ATCCATAGTTTGGACTGACA+GGG | + | chr1.3:11600145-11600164 | None:intergenic | 40.0% | |
| ATGCTCCAGTAACATTCATC+AGG | + | chr1.3:11600886-11600905 | None:intergenic | 40.0% | |
| ATGGATCTGGTACCATATCT+TGG | - | chr1.3:11600159-11600178 | MS.gene55705:intron | 40.0% | |
| ATGGTACCAGATCCATAGTT+TGG | + | chr1.3:11600155-11600174 | None:intergenic | 40.0% | |
| CGTCGCTTCTTGCATTTAAA+TGG | + | chr1.3:11600214-11600233 | None:intergenic | 40.0% | |
| CTCTGATCCTCTGCAAAAAT+AGG | + | chr1.3:11601075-11601094 | None:intergenic | 40.0% | |
| GATGAATGTTACTGGAGCAT+AGG | - | chr1.3:11600886-11600905 | MS.gene55705:intron | 40.0% | |
| GCAACATTAAACCAACTACC+GGG | + | chr1.3:11601514-11601533 | None:intergenic | 40.0% | |
| GGCAACATTAAACCAACTAC+CGG | + | chr1.3:11601515-11601534 | None:intergenic | 40.0% | |
| GTTGAGAAGAAGATGAGGTT+TGG | + | chr1.3:11599065-11599084 | None:intergenic | 40.0% | |
| TAACGCGATCTCTTGATTCA+CGG | + | chr1.3:11599925-11599944 | None:intergenic | 40.0% | |
| TAAGATTGCTGCTGAAGAGA+AGG | - | chr1.3:11599281-11599300 | MS.gene55705:intron | 40.0% | |
| TCAAGCCTGATGAATGTTAC+TGG | - | chr1.3:11600878-11600897 | MS.gene55705:intron | 40.0% | |
| TCCATACCATTACCCTGATT+GGG | + | chr1.3:11600513-11600532 | None:intergenic | 40.0% | |
| TGAGAAGGAAGATGAGAAGA+AGG | - | chr1.3:11599365-11599384 | MS.gene55705:intron | 40.0% | |
| TGATTCACGGTCCTTATCAT+TGG | + | chr1.3:11599912-11599931 | None:intergenic | 40.0% | |
| TGGATCTGGTACCATATCTT+GGG | - | chr1.3:11600160-11600179 | MS.gene55705:intron | 40.0% | |
| TGTATTCGACTTCATCGCTA+AGG | - | chr1.3:11599155-11599174 | MS.gene55705:intron | 40.0% | |
| TTGGATTTGAGGATTTCTCC+CGG | - | chr1.3:11601493-11601512 | MS.gene55705:CDS | 40.0% | |
| ! | AGAGAACGGAATAGGTTTTG+AGG | + | chr1.3:11599094-11599113 | None:intergenic | 40.0% |
| ! | AGCAGCAATCTTAGCTTTCT+CGG | + | chr1.3:11599274-11599293 | None:intergenic | 40.0% |
| ! | ATATAGATGGACTTAGGCAG+GGG | + | chr1.3:11600073-11600092 | None:intergenic | 40.0% |
| ! | ATGAGGTTTGGGTTTCTTCT+TGG | + | chr1.3:11599053-11599072 | None:intergenic | 40.0% |
| ! | CTGGTGGAAATGTCTTGTTA+AGG | - | chr1.3:11601134-11601153 | MS.gene55705:intron | 40.0% |
| ! | GATATAGATGGACTTAGGCA+GGG | + | chr1.3:11600074-11600093 | None:intergenic | 40.0% |
| ! | GATTTTGTTCCATTTGGCAC+TGG | + | chr1.3:11600588-11600607 | None:intergenic | 40.0% |
| ! | GCTCTCAGGTTCAACTTTTT+GGG | + | chr1.3:11601178-11601197 | None:intergenic | 40.0% |
| ! | TGATATAGATGGACTTAGGC+AGG | + | chr1.3:11600075-11600094 | None:intergenic | 40.0% |
| ! | TGCTCTCAGGTTCAACTTTT+TGG | + | chr1.3:11601179-11601198 | None:intergenic | 40.0% |
| !! | ACATTTTCGAGAAAAGCGGT+TGG | + | chr1.3:11599138-11599157 | None:intergenic | 40.0% |
| !! | GAGAACGGAATAGGTTTTGA+GGG | + | chr1.3:11599093-11599112 | None:intergenic | 40.0% |
| !! | TCCACAATTTCTAGCTCAAC+CGG | - | chr1.3:11599692-11599711 | MS.gene55705:intron | 40.0% |
| !!! | GGAATAGGTTTTGAGGGTTT+TGG | + | chr1.3:11599087-11599106 | None:intergenic | 40.0% |
| AAGGTGGAAGAGAACGGAAT+AGG | + | chr1.3:11599102-11599121 | None:intergenic | 45.0% | |
| ACAGTTCCCAATCAGGGTAA+TGG | - | chr1.3:11600504-11600523 | MS.gene55705:intron | 45.0% | |
| ACCGGTTGAGCTAGAAATTG+TGG | + | chr1.3:11599696-11599715 | None:intergenic | 45.0% | |
| AGCTATGGAGGTAGATGAGA+AGG | - | chr1.3:11599350-11599369 | MS.gene55705:intron | 45.0% | |
| CCAAGCATGATCAAATGGAC+TGG | - | chr1.3:11601115-11601134 | MS.gene55705:intron | 45.0% | |
| CCAGTCCATTTGATCATGCT+TGG | + | chr1.3:11601118-11601137 | None:intergenic | 45.0% | |
| CCATATCTTGGGGGAATTCA+AGG | - | chr1.3:11600171-11600190 | MS.gene55705:intron | 45.0% | |
| CCTTGAATTCCCCCAAGATA+TGG | + | chr1.3:11600174-11600193 | None:intergenic | 45.0% | |
| GAGAAGAAGGATGGAGAAAG+TGG | - | chr1.3:11599378-11599397 | MS.gene55705:intron | 45.0% | |
| GATCAGAGGCAGAAGTCTAT+GGG | - | chr1.3:11601554-11601573 | MS.gene55705:CDS | 45.0% | |
| GATCCATAGTTTGGACTGAC+AGG | + | chr1.3:11600146-11600165 | None:intergenic | 45.0% | |
| GATCTGGTACCATATCTTGG+GGG | - | chr1.3:11600162-11600181 | MS.gene55705:intron | 45.0% | |
| GGATCTGGTACCATATCTTG+GGG | - | chr1.3:11600161-11600180 | MS.gene55705:intron | 45.0% | |
| GGTTGGATTTGAAGGATCGA+AGG | + | chr1.3:11599121-11599140 | None:intergenic | 45.0% | |
| GTCAGTCCAAACTATGGATC+TGG | - | chr1.3:11600146-11600165 | MS.gene55705:intron | 45.0% | |
| GTGAATGTTCCAGTGCCAAA+TGG | - | chr1.3:11600576-11600595 | MS.gene55705:intron | 45.0% | |
| TGATCAGAGGCAGAAGTCTA+TGG | - | chr1.3:11601553-11601572 | MS.gene55705:CDS | 45.0% | |
| TGGATTTGAAGGATCGAAGG+TGG | + | chr1.3:11599118-11599137 | None:intergenic | 45.0% | |
| ! | CACAAACAAGTGTCACTGGA+AGG | + | chr1.3:11600728-11600747 | None:intergenic | 45.0% |
| ! | TCAGGGTAATGGTATGGATC+TGG | - | chr1.3:11600515-11600534 | MS.gene55705:intron | 45.0% |
| ! | TCCCAATCAGGGTAATGGTA+TGG | - | chr1.3:11600509-11600528 | MS.gene55705:intron | 45.0% |
| ! | TGATGGACAGTTCCCAATCA+GGG | - | chr1.3:11600498-11600517 | MS.gene55705:intron | 45.0% |
| ! | TTGATGGACAGTTCCCAATC+AGG | - | chr1.3:11600497-11600516 | MS.gene55705:intron | 45.0% |
| !! | AGAGAAGGCGAAGGTTGATA+AGG | - | chr1.3:11599296-11599315 | MS.gene55705:intron | 45.0% |
| !! | AGCATGATCAAATGGACTGG+TGG | - | chr1.3:11601118-11601137 | MS.gene55705:intron | 45.0% |
| !!! | TACTTTTTTTAAAATATATT+GGG | - | chr1.3:11599472-11599491 | MS.gene55705:CDS | 5.0% |
| !!! | TTACTTTTTTTAAAATATAT+TGG | - | chr1.3:11599471-11599490 | MS.gene55705:CDS | 5.0% |
| AAACCCACACACACGCAAGT+CGG | + | chr1.3:11599751-11599770 | None:intergenic | 50.0% | |
| AAGTGAGGAGCTCCAGAAAC+AGG | - | chr1.3:11601586-11601605 | MS.gene55705:CDS | 50.0% | |
| CTCCCTGTCAGTCCAAACTA+TGG | - | chr1.3:11600140-11600159 | MS.gene55705:intron | 50.0% | |
| CTTTACCTTCACAGCGCGAA+CGG | + | chr1.3:11599232-11599251 | None:intergenic | 50.0% | |
| GAACCTGAGAGCAGCAAACT+TGG | - | chr1.3:11601186-11601205 | MS.gene55705:intron | 50.0% | |
| GATGGAGAAAGTGGCTTAGC+AGG | - | chr1.3:11599387-11599406 | MS.gene55705:intron | 50.0% | |
| GGATCGAAGGTGGAAGAGAA+CGG | + | chr1.3:11599108-11599127 | None:intergenic | 50.0% | |
| TATGGGCCTTCCAACAAGTG+AGG | - | chr1.3:11601571-11601590 | MS.gene55705:CDS | 50.0% | |
| TCAACAGTCTGTCGAGTCTC+AGG | + | chr1.3:11601222-11601241 | None:intergenic | 50.0% | |
| TGAGGATTTCTCCCGGTAGT+TGG | - | chr1.3:11601500-11601519 | MS.gene55705:CDS | 50.0% | |
| ! | CAATGATTCGGCTGAGAAGG+TGG | - | chr1.3:11599197-11599216 | MS.gene55705:intron | 50.0% |
| ! | CGACAATGATTCGGCTGAGA+AGG | - | chr1.3:11599194-11599213 | MS.gene55705:intron | 50.0% |
| !! | GAAGGCGAAGGTTGATAAGG+CGG | - | chr1.3:11599299-11599318 | MS.gene55705:intron | 50.0% |
| !! | TCACCAAGTTTGCTGCTCTC+AGG | + | chr1.3:11601192-11601211 | None:intergenic | 50.0% |
| !! | TTCTGGAGCTCCTCACTTGT+TGG | + | chr1.3:11601584-11601603 | None:intergenic | 50.0% |
| AACCCACACACACGCAAGTC+GGG | + | chr1.3:11599750-11599769 | None:intergenic | 55.0% | |
| CGCTCCTTCTGTCTTTAGCC+TGG | - | chr1.3:11600772-11600791 | MS.gene55705:intron | 55.0% | |
| CTTGCGTGTGTGTGGGTTTC+CGG | - | chr1.3:11599752-11599771 | MS.gene55705:intron | 55.0% | |
| GGCGGAGAAGAAAGCTATGG+AGG | - | chr1.3:11599338-11599357 | MS.gene55705:intron | 55.0% | |
| TCTGTCGAGTCTCAGGATCC+AGG | + | chr1.3:11601215-11601234 | None:intergenic | 55.0% | |
| TGCGGCGGAGAAGAAAGCTA+TGG | - | chr1.3:11599335-11599354 | MS.gene55705:intron | 55.0% | |
| TGCTGCTGAAGAGAAGGCGA+AGG | - | chr1.3:11599287-11599306 | MS.gene55705:intron | 55.0% | |
| ! | GAGCAGCAAACTTGGTGACC+TGG | - | chr1.3:11601194-11601213 | MS.gene55705:intron | 55.0% |
| ! | GGAGCTCCTCACTTGTTGGA+AGG | + | chr1.3:11601580-11601599 | None:intergenic | 55.0% |
| ACCCACACACACGCAAGTCG+GGG | + | chr1.3:11599749-11599768 | None:intergenic | 60.0% | |
| TACCTTCACAGCGCGAACGG+CGG | + | chr1.3:11599229-11599248 | None:intergenic | 60.0% | |
| ! | AACCCCGACTTGCGTGTGTG+TGG | - | chr1.3:11599744-11599763 | MS.gene55705:intron | 60.0% |
| ! | ACCCCGACTTGCGTGTGTGT+GGG | - | chr1.3:11599745-11599764 | MS.gene55705:intron | 60.0% |
| !! | GGCGAAGGTTGATAAGGCGG+CGG | - | chr1.3:11599302-11599321 | MS.gene55705:intron | 60.0% |
| ATCCGCCGTTCGCGCTGTGA+AGG | - | chr1.3:11599224-11599243 | MS.gene55705:intron | 65.0% | |
| GGCGGCGGCTGCTGTTGCTG+CGG | - | chr1.3:11599317-11599336 | MS.gene55705:intron | 75.0% | |
| GGCGGCTGCTGTTGCTGCGG+CGG | - | chr1.3:11599320-11599339 | MS.gene55705:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 11599030 | 11601634 | 11599030 | ID=MS.gene55705 |
| chr1.3 | mRNA | 11599030 | 11601634 | 11599030 | ID=MS.gene55705.t1;Parent=MS.gene55705 |
| chr1.3 | exon | 11601256 | 11601634 | 11601256 | ID=MS.gene55705.t1.exon1;Parent=MS.gene55705.t1 |
| chr1.3 | CDS | 11601256 | 11601634 | 11601256 | ID=cds.MS.gene55705.t1;Parent=MS.gene55705.t1 |
| chr1.3 | exon | 11599984 | 11600156 | 11599984 | ID=MS.gene55705.t1.exon2;Parent=MS.gene55705.t1 |
| chr1.3 | CDS | 11599984 | 11600156 | 11599984 | ID=cds.MS.gene55705.t1;Parent=MS.gene55705.t1 |
| chr1.3 | exon | 11599757 | 11599805 | 11599757 | ID=MS.gene55705.t1.exon3;Parent=MS.gene55705.t1 |
| chr1.3 | CDS | 11599757 | 11599805 | 11599757 | ID=cds.MS.gene55705.t1;Parent=MS.gene55705.t1 |
| chr1.3 | exon | 11599413 | 11599579 | 11599413 | ID=MS.gene55705.t1.exon4;Parent=MS.gene55705.t1 |
| chr1.3 | CDS | 11599413 | 11599579 | 11599413 | ID=cds.MS.gene55705.t1;Parent=MS.gene55705.t1 |
| chr1.3 | exon | 11599030 | 11599113 | 11599030 | ID=MS.gene55705.t1.exon5;Parent=MS.gene55705.t1 |
| chr1.3 | CDS | 11599030 | 11599113 | 11599030 | ID=cds.MS.gene55705.t1;Parent=MS.gene55705.t1 |
| Gene Sequence |
| Protein sequence |
