Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57583.t1 | KEH34846.1 | 92.4 | 502 | 37 | 1 | 1 | 502 | 1 | 501 | 6.30E-257 | 896.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57583.t1 | Q84VX4 | 42.6 | 523 | 223 | 11 | 21 | 497 | 42 | 533 | 5.0e-93 | 343.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57583.t1 | A0A072UZL2 | 92.4 | 502 | 37 | 1 | 1 | 502 | 1 | 501 | 4.6e-257 | 896.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene32240 | MS.gene57583 | PPI |
| MS.gene69077 | MS.gene57583 | PPI |
| MS.gene025787 | MS.gene57583 | PPI |
| MS.gene014595 | MS.gene57583 | PPI |
| MS.gene57583 | MS.gene015458 | PPI |
| MS.gene43188 | MS.gene57583 | PPI |
| MS.gene014578 | MS.gene57583 | PPI |
| MS.gene007753 | MS.gene57583 | PPI |
| MS.gene09143 | MS.gene57583 | PPI |
| MS.gene21145 | MS.gene57583 | PPI |
| MS.gene23930 | MS.gene57583 | PPI |
| MS.gene57583 | MS.gene97314 | PPI |
| MS.gene007855 | MS.gene57583 | PPI |
| MS.gene57583 | MS.gene032323 | PPI |
| MS.gene40241 | MS.gene57583 | PPI |
| MS.gene40225 | MS.gene57583 | PPI |
| MS.gene03716 | MS.gene57583 | PPI |
| MS.gene57583 | MS.gene95446 | PPI |
| MS.gene69089 | MS.gene57583 | PPI |
| MS.gene40689 | MS.gene57583 | PPI |
| MS.gene57583 | MS.gene049752 | PPI |
| MS.gene38996 | MS.gene57583 | PPI |
| MS.gene57583 | MS.gene09948 | PPI |
| MS.gene022091 | MS.gene57583 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57583.t1 | MTR_3g072990 | 92.430 | 502 | 37 | 1 | 1 | 502 | 1 | 501 | 0.0 | 928 |
| MS.gene57583.t1 | MTR_3g072990 | 93.159 | 497 | 33 | 1 | 1 | 497 | 1 | 496 | 0.0 | 925 |
| MS.gene57583.t1 | MTR_3g072990 | 92.032 | 502 | 37 | 2 | 1 | 502 | 1 | 499 | 0.0 | 919 |
| MS.gene57583.t1 | MTR_3g072990 | 92.757 | 497 | 33 | 2 | 1 | 497 | 1 | 494 | 0.0 | 915 |
| MS.gene57583.t1 | MTR_3g072990 | 88.732 | 497 | 32 | 2 | 1 | 497 | 1 | 473 | 0.0 | 868 |
| MS.gene57583.t1 | MTR_3g072990 | 88.330 | 497 | 32 | 3 | 1 | 497 | 1 | 471 | 0.0 | 859 |
| MS.gene57583.t1 | MTR_5g059280 | 57.143 | 511 | 181 | 10 | 1 | 497 | 1 | 487 | 6.17e-178 | 518 |
| MS.gene57583.t1 | MTR_5g059280 | 54.599 | 511 | 171 | 10 | 1 | 497 | 1 | 464 | 1.29e-164 | 483 |
| MS.gene57583.t1 | MTR_5g059280 | 63.351 | 382 | 127 | 4 | 119 | 497 | 9 | 380 | 1.18e-157 | 462 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57583.t1 | AT1G77720 | 42.586 | 526 | 225 | 11 | 18 | 497 | 39 | 533 | 3.58e-117 | 363 |
Find 121 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGCTCAACCTGCTGAATTT+TGG | 0.112779 | 3.4:+71784731 | None:intergenic |
| CGTGATTATGCTACTGCTTT+TGG | 0.142785 | 3.4:-71783928 | MS.gene57583:CDS |
| CATCCAGCTCCTTCCACTTC+TGG | 0.167296 | 3.4:+71783428 | None:intergenic |
| AGAAGCATGTTTCGAATTTC+CGG | 0.206618 | 3.4:+71784269 | None:intergenic |
| GGAAGCTTCGATTGGATTAC+AGG | 0.253851 | 3.4:-71784769 | MS.gene57583:CDS |
| CACATCCAAAGATGATGTTT+TGG | 0.258066 | 3.4:+71784173 | None:intergenic |
| TTACTACTCACGGCCTTATC+TGG | 0.297784 | 3.4:+71784123 | None:intergenic |
| GAAAGGCTCTCTTAGTAATA+AGG | 0.302755 | 3.4:-71783527 | MS.gene57583:CDS |
| AAGAGATCGAATATCTAAAT+AGG | 0.303126 | 3.4:-71783897 | MS.gene57583:CDS |
| AGTGCCCAAAACATCATCTT+TGG | 0.363066 | 3.4:-71784178 | MS.gene57583:CDS |
| TCCATCACTCTTTCAGCTAT+AGG | 0.366941 | 3.4:+71784450 | None:intergenic |
| TCAGAAAATACAGATAATTC+TGG | 0.367175 | 3.4:-71784426 | MS.gene57583:CDS |
| GCGTCTTGGCCTAATGATAT+TGG | 0.383887 | 3.4:+71785320 | None:intergenic |
| ATCCAGCTCCTTCCACTTCT+GGG | 0.386417 | 3.4:+71783429 | None:intergenic |
| CAATAAAATGTCAGTTGATA+AGG | 0.390414 | 3.4:-71784394 | MS.gene57583:CDS |
| GTAATAAGGATGGCCGAGTC+AGG | 0.391324 | 3.4:-71783513 | MS.gene57583:CDS |
| TCGAAGCCAGTTCTCATCTA+TGG | 0.394432 | 3.4:+71783393 | None:intergenic |
| TTCACTTGGATTCACAGAAA+TGG | 0.403420 | 3.4:-71784814 | MS.gene57583:CDS |
| TATCAACGTCTTGGCAAGAT+AGG | 0.408350 | 3.4:-71784033 | MS.gene57583:CDS |
| TATACAGCTTATAGATTATG+AGG | 0.416360 | 3.4:-71783854 | MS.gene57583:intron |
| GCTGAACCTTTAGGAGAGAT+TGG | 0.419631 | 3.4:-71784480 | MS.gene57583:CDS |
| ATCTGCAGGCTCTTTCCCTT+CGG | 0.423208 | 3.4:+71784227 | None:intergenic |
| ACAGAAATGGAGTATATAGA+AGG | 0.428627 | 3.4:-71784801 | MS.gene57583:CDS |
| AGCGACACAGTCTTCGGTTG+TGG | 0.428827 | 3.4:-71784601 | MS.gene57583:CDS |
| CGCGTGGTTGCTGAACCTTT+AGG | 0.429090 | 3.4:-71784489 | MS.gene57583:CDS |
| ACCCGTTTGCATCTAGATAG+TGG | 0.430190 | 3.4:-71784516 | MS.gene57583:CDS |
| TCTGATCTCAAACTGAAATC+AGG | 0.438335 | 3.4:+71784711 | None:intergenic |
| GAGAGGACGGTGACGCTTCA+AGG | 0.442395 | 3.4:+71785438 | None:intergenic |
| CAGGGCAATCCAATATCATT+AGG | 0.447298 | 3.4:-71785329 | MS.gene57583:CDS |
| GCCAGTTCTCATCTATGGTC+TGG | 0.454845 | 3.4:+71783398 | None:intergenic |
| TCGAAACATGCTTCTTCTGA+TGG | 0.455598 | 3.4:-71784261 | MS.gene57583:CDS |
| TGAACGTGGCGGAGGAAGTC+CGG | 0.458954 | 3.4:+71785466 | None:intergenic |
| TGTTGCTCACGTACAGCGTC+AGG | 0.459132 | 3.4:-71784205 | MS.gene57583:CDS |
| TCTTCTTATATGAGTTCACT+TGG | 0.471070 | 3.4:-71784828 | MS.gene57583:CDS |
| GCTCGTCGGTCGCTAAGAAA+AGG | 0.473499 | 3.4:-71784098 | MS.gene57583:CDS |
| TGCAGGGGCCAATGATGAAA+AGG | 0.473794 | 3.4:-71784871 | MS.gene57583:intron |
| GATGGCCGAGTCAGGGATGA+TGG | 0.480498 | 3.4:-71783505 | MS.gene57583:CDS |
| GAATGCATATTAAAAGAATC+CGG | 0.482713 | 3.4:-71784288 | MS.gene57583:CDS |
| CAAGCTTCTGATTCTTGCGT+CGG | 0.486774 | 3.4:-71784357 | MS.gene57583:CDS |
| ACCAGACCATAGATGAGAAC+TGG | 0.487099 | 3.4:-71783399 | MS.gene57583:CDS |
| AAAGCAACCCAAAATTCAGC+AGG | 0.492014 | 3.4:-71784739 | MS.gene57583:CDS |
| GGCAAGCTTTATCAACGTCT+TGG | 0.492893 | 3.4:-71784042 | MS.gene57583:CDS |
| ACCACTATCTAGATGCAAAC+GGG | 0.503818 | 3.4:+71784515 | None:intergenic |
| AACCACTATCTAGATGCAAA+CGG | 0.505881 | 3.4:+71784514 | None:intergenic |
| AACCGAGCGGAAGCTTCGAT+TGG | 0.511352 | 3.4:-71784777 | MS.gene57583:CDS |
| ATATACATGGTACTTGAATA+CGG | 0.511944 | 3.4:-71783478 | MS.gene57583:CDS |
| TGATTCTTCTTCTTCCCCAC+CGG | 0.512407 | 3.4:-71785485 | MS.gene57583:CDS |
| GATAAGGCCGTGAGTAGTAA+AGG | 0.512605 | 3.4:-71784120 | MS.gene57583:CDS |
| TGTTCACAATAAAGTTCCAC+AGG | 0.513170 | 3.4:-71785202 | MS.gene57583:CDS |
| AGAAGGGGCAATAACAGTGC+TGG | 0.520852 | 3.4:+71785236 | None:intergenic |
| TGAACATTTGCATCTTGAGA+AGG | 0.521941 | 3.4:+71785219 | None:intergenic |
| ACGGGTTGTTGAATTCATCA+TGG | 0.524588 | 3.4:+71784533 | None:intergenic |
| AGGCGGCTTGAACGTGGCGG+AGG | 0.527722 | 3.4:+71785458 | None:intergenic |
| TTGAAGCGTCACCGTCCTCT+CGG | 0.528821 | 3.4:-71785436 | MS.gene57583:intron |
| TAAACACCAATCTCTCCTAA+AGG | 0.534507 | 3.4:+71784474 | None:intergenic |
| GAACATTTGCATCTTGAGAA+GGG | 0.534895 | 3.4:+71785220 | None:intergenic |
| TTCTTGCGTCGGTGCCGAGT+TGG | 0.535688 | 3.4:-71784346 | MS.gene57583:CDS |
| ATTCATCATGGGAGCTGAAG+TGG | 0.537588 | 3.4:+71784545 | None:intergenic |
| CGTGGCGGAGGAAGTCCGGT+GGG | 0.537591 | 3.4:+71785470 | None:intergenic |
| TTGCTTGAAGAAGTTATGAA+AGG | 0.538181 | 3.4:-71783544 | MS.gene57583:CDS |
| ATCTAATTTATTTAGGTACA+GGG | 0.538797 | 3.4:-71785347 | MS.gene57583:intron |
| TGACGAAGAATCGTGCGTCT+TGG | 0.538907 | 3.4:+71785306 | None:intergenic |
| AGACAAATTCTCCAACTCAA+TGG | 0.540361 | 3.4:+71784848 | None:intergenic |
| GATTTCAGTTTGAGATCAGA+CGG | 0.541511 | 3.4:-71784708 | MS.gene57583:CDS |
| TCAACCAGCGACACAGTCTT+CGG | 0.541575 | 3.4:-71784607 | MS.gene57583:CDS |
| AAGGTTAGACTTCCCATCCA+TGG | 0.543192 | 3.4:+71785519 | None:intergenic |
| TGATGAAAAGGCCATTGAGT+TGG | 0.543682 | 3.4:-71784859 | MS.gene57583:CDS |
| CGGGTTGTTGAATTCATCAT+GGG | 0.548757 | 3.4:+71784534 | None:intergenic |
| ATTTCAGTTTGAGATCAGAC+GGG | 0.549156 | 3.4:-71784707 | MS.gene57583:CDS |
| CGAGGAGAGCTACGGTTACA+CGG | 0.549879 | 3.4:-71784662 | MS.gene57583:CDS |
| TCCTATAGCTGAAAGAGTGA+TGG | 0.553171 | 3.4:-71784451 | MS.gene57583:CDS |
| GAAGAAGAATCAGACTTGAT+CGG | 0.557672 | 3.4:+71785496 | None:intergenic |
| CTCACATGTTGTCCCAGAAG+TGG | 0.558692 | 3.4:-71783441 | MS.gene57583:CDS |
| ACAACCGAAGACTGTGTCGC+TGG | 0.559947 | 3.4:+71784603 | None:intergenic |
| TGTACGTGAGCAACATCTGC+AGG | 0.565622 | 3.4:+71784213 | None:intergenic |
| AACATTTGCATCTTGAGAAG+GGG | 0.575571 | 3.4:+71785221 | None:intergenic |
| CACTTAAGAAGATCAAACTC+AGG | 0.575749 | 3.4:-71783954 | MS.gene57583:CDS |
| GCGACACAGTCTTCGGTTGT+GGG | 0.577333 | 3.4:-71784600 | MS.gene57583:CDS |
| CGTCTTGGCAAGATAGGCAG+TGG | 0.580059 | 3.4:-71784027 | MS.gene57583:CDS |
| TTCGAGATTGAATCATGCGT+TGG | 0.581661 | 3.4:+71785282 | None:intergenic |
| CAGAAGTGGAAGGAGCTGGA+TGG | 0.581825 | 3.4:-71783427 | MS.gene57583:CDS |
| GTCCCAGAAGTGGAAGGAGC+TGG | 0.589721 | 3.4:-71783431 | MS.gene57583:CDS |
| ACTCTCTTTAGATGCCAACT+CGG | 0.590583 | 3.4:+71784332 | None:intergenic |
| CATGTTGTCCCAGAAGTGGA+AGG | 0.590690 | 3.4:-71783437 | MS.gene57583:CDS |
| GGGAATAAATACCGAGAGGA+CGG | 0.591139 | 3.4:+71785425 | None:intergenic |
| TAATAAGGATGGCCGAGTCA+GGG | 0.591503 | 3.4:-71783512 | MS.gene57583:CDS |
| GGCTCTCTTAGTAATAAGGA+TGG | 0.595780 | 3.4:-71783523 | MS.gene57583:CDS |
| ATCCAATCGAAGCTTCCGCT+CGG | 0.603075 | 3.4:+71784775 | None:intergenic |
| TATATCCATCATCCCTGACT+CGG | 0.603166 | 3.4:+71783500 | None:intergenic |
| GTGGAGATTGTTCCATGGAT+GGG | 0.605130 | 3.4:-71785531 | None:intergenic |
| AAGAATCAGACTTGATCGGA+AGG | 0.605161 | 3.4:+71785500 | None:intergenic |
| GCTTCAAGGCGGCTTGAACG+TGG | 0.610273 | 3.4:+71785452 | None:intergenic |
| GGTGGAGATTGTTCCATGGA+TGG | 0.615431 | 3.4:-71785532 | None:intergenic |
| GATGGTGACAAGTTAACCGA+AGG | 0.619313 | 3.4:-71784243 | MS.gene57583:CDS |
| TATGTTGCCGAGGAGAGCTA+CGG | 0.620209 | 3.4:-71784670 | MS.gene57583:CDS |
| CGTGTAACCGTAGCTCTCCT+CGG | 0.621401 | 3.4:+71784663 | None:intergenic |
| ACGTGGCGGAGGAAGTCCGG+TGG | 0.629067 | 3.4:+71785469 | None:intergenic |
| CTTGGCAAGATAGGCAGTGG+TGG | 0.631587 | 3.4:-71784024 | MS.gene57583:CDS |
| TCTAGATAGTGGTTTGCGCG+TGG | 0.636186 | 3.4:-71784505 | MS.gene57583:CDS |
| ACTTAAGAAGATCAAACTCA+GGG | 0.638163 | 3.4:-71783953 | MS.gene57583:CDS |
| GGATGATGGATATATATACA+TGG | 0.641730 | 3.4:-71783491 | MS.gene57583:CDS |
| TGAGTTGCTCTATGTTGCCG+AGG | 0.641925 | 3.4:-71784680 | MS.gene57583:CDS |
| TGGAAGCAGTGAGGTGCACA+AGG | 0.643394 | 3.4:-71784004 | MS.gene57583:CDS |
| TTGTATTTAGGTGACTGACA+AGG | 0.644007 | 3.4:-71783569 | MS.gene57583:intron |
| GGAATGAACCGATGTAGTTG+TGG | 0.646819 | 3.4:+71784566 | None:intergenic |
| TTCGTGTGCCACAACTACAT+CGG | 0.654597 | 3.4:-71784574 | MS.gene57583:CDS |
| GTGGCGGAGGAAGTCCGGTG+GGG | 0.675364 | 3.4:+71785471 | None:intergenic |
| CGTGAGTAGTAAAGGCTCGT+CGG | 0.676103 | 3.4:-71784112 | MS.gene57583:CDS |
| ATGGTGACAAGTTAACCGAA+GGG | 0.676778 | 3.4:-71784242 | MS.gene57583:CDS |
| CGACGAGCCTTTACTACTCA+CGG | 0.678410 | 3.4:+71784113 | None:intergenic |
| GAGGAGAGCTACGGTTACAC+GGG | 0.678632 | 3.4:-71784661 | MS.gene57583:CDS |
| TCAAGGCGGCTTGAACGTGG+CGG | 0.679591 | 3.4:+71785455 | None:intergenic |
| TTTCAGTTTGAGATCAGACG+GGG | 0.686391 | 3.4:-71784706 | MS.gene57583:CDS |
| GAATATCTAAATAGGCTGAG+AGG | 0.686764 | 3.4:-71783889 | MS.gene57583:CDS |
| GATGTAGTTGTGGCACACGA+AGG | 0.697677 | 3.4:+71784576 | None:intergenic |
| AGGCAGTGGTGGAAGCAGTG+AGG | 0.705092 | 3.4:-71784013 | MS.gene57583:CDS |
| GTTCACAATAAAGTTCCACA+GGG | 0.719306 | 3.4:-71785201 | MS.gene57583:intron |
| AGGACGGTGACGCTTCAAGG+CGG | 0.730343 | 3.4:+71785441 | None:intergenic |
| GTATATAGAAGGCAACCGAG+CGG | 0.739222 | 3.4:-71784790 | MS.gene57583:CDS |
| TTCAGTTTGAGATCAGACGG+GGG | 0.744679 | 3.4:-71784705 | MS.gene57583:CDS |
| CTTAAGAAGATCAAACTCAG+GGG | 0.774854 | 3.4:-71783952 | MS.gene57583:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTCAGTAATAATTTTTTTT+GGG | - | chr3.4:71785191-71785210 | MS.gene57583:intron | 10.0% |
| !!! | TTTTCAGTAATAATTTTTTT+TGG | - | chr3.4:71785190-71785209 | MS.gene57583:intron | 10.0% |
| !! | GTTTCTAATCTAATTTATTT+AGG | - | chr3.4:71783508-71783527 | MS.gene57583:CDS | 15.0% |
| !! | AATCTAATTTATTTAGGTAC+AGG | - | chr3.4:71783514-71783533 | MS.gene57583:CDS | 20.0% |
| !! | ATCTAATTTATTTAGGTACA+GGG | - | chr3.4:71783515-71783534 | MS.gene57583:CDS | 20.0% |
| !! | TGCATTGTTAAAAACATATT+TGG | + | chr3.4:71783975-71783994 | None:intergenic | 20.0% |
| !! | TTAACCTTGAAAAATAAATC+AGG | + | chr3.4:71784799-71784818 | None:intergenic | 20.0% |
| !!! | AAATATGTTTTTAACAATGC+AGG | - | chr3.4:71783974-71783993 | MS.gene57583:CDS | 20.0% |
| !!! | AATATGTTTTTAACAATGCA+GGG | - | chr3.4:71783975-71783994 | MS.gene57583:CDS | 20.0% |
| !!! | ATACTCATTGTCAATTTTTT+GGG | - | chr3.4:71785151-71785170 | MS.gene57583:intron | 20.0% |
| !!! | ATTCTTTTAATATGCATTCT+TGG | + | chr3.4:71784573-71784592 | None:intergenic | 20.0% |
| !!! | ATTTTTGTCACTTACTTAAT+TGG | - | chr3.4:71783847-71783866 | MS.gene57583:intron | 20.0% |
| !!! | CTTTTTTAATAAACCCAATT+TGG | - | chr3.4:71783691-71783710 | MS.gene57583:intron | 20.0% |
| !!! | GATTTATTTTTCAAGGTTAA+TGG | - | chr3.4:71784799-71784818 | MS.gene57583:CDS | 20.0% |
| !!! | TTTTTGTCACTTACTTAATT+GGG | - | chr3.4:71783848-71783867 | MS.gene57583:intron | 20.0% |
| ! | AAAGTTAGAAAAACCAGATA+AGG | - | chr3.4:71784726-71784745 | MS.gene57583:CDS | 25.0% |
| ! | AAGACAGTAAAGATTCAATT+TGG | + | chr3.4:71783895-71783914 | None:intergenic | 25.0% |
| ! | AAGAGATCGAATATCTAAAT+AGG | - | chr3.4:71784965-71784984 | MS.gene57583:intron | 25.0% |
| ! | AAGTTGAATTGAAAAGGAAA+AGG | + | chr3.4:71783461-71783480 | None:intergenic | 25.0% |
| ! | AGTTGAATTGAAAAGGAAAA+GGG | + | chr3.4:71783460-71783479 | None:intergenic | 25.0% |
| ! | ATATACATGGTACTTGAATA+CGG | - | chr3.4:71785384-71785403 | MS.gene57583:intron | 25.0% |
| ! | GAAAAATAAATCAGGATCAT+AGG | + | chr3.4:71784791-71784810 | None:intergenic | 25.0% |
| ! | GAATGCATATTAAAAGAATC+CGG | - | chr3.4:71784574-71784593 | MS.gene57583:CDS | 25.0% |
| ! | TAAAAAAGAAAATTACCCTG+TGG | + | chr3.4:71783679-71783698 | None:intergenic | 25.0% |
| ! | TATACAGCTTATAGATTATG+AGG | - | chr3.4:71785008-71785027 | MS.gene57583:intron | 25.0% |
| ! | TCAGAAAATACAGATAATTC+TGG | - | chr3.4:71784436-71784455 | MS.gene57583:CDS | 25.0% |
| ! | TGAGCAAAAATTTAATTCAC+TGG | + | chr3.4:71785270-71785289 | None:intergenic | 25.0% |
| ! | TGTGAAGCATAAATAACTAA+AGG | + | chr3.4:71785083-71785102 | None:intergenic | 25.0% |
| !! | AGGGTTTTCAATTTTCAATT+AGG | - | chr3.4:71783485-71783504 | MS.gene57583:CDS | 25.0% |
| !! | CAATAAAATGTCAGTTGATA+AGG | - | chr3.4:71784468-71784487 | MS.gene57583:CDS | 25.0% |
| !! | GGGTTTTCAATTTTCAATTA+GGG | - | chr3.4:71783486-71783505 | MS.gene57583:CDS | 25.0% |
| !! | TTTTCAATTCAACTTAGCTA+GGG | - | chr3.4:71783466-71783485 | MS.gene57583:CDS | 25.0% |
| !! | TTTTGCTCAATCTTGTATTT+AGG | - | chr3.4:71785281-71785300 | MS.gene57583:CDS | 25.0% |
| !!! | ATATGTTTTTAACAATGCAG+GGG | - | chr3.4:71783976-71783995 | MS.gene57583:CDS | 25.0% |
| !!! | CATACTCATTGTCAATTTTT+TGG | - | chr3.4:71785150-71785169 | MS.gene57583:intron | 25.0% |
| !!! | TACTCATTGTCAATTTTTTG+GGG | - | chr3.4:71785152-71785171 | MS.gene57583:intron | 25.0% |
| !!! | TGATCCTGATTTATTTTTCA+AGG | - | chr3.4:71784792-71784811 | MS.gene57583:CDS | 25.0% |
| !!! | TTAGTACTTTTTTCTGTTAG+TGG | + | chr3.4:71783749-71783768 | None:intergenic | 25.0% |
| ACAGAAATGGAGTATATAGA+AGG | - | chr3.4:71784061-71784080 | MS.gene57583:CDS | 30.0% | |
| ACTTAAGAAGATCAAACTCA+GGG | - | chr3.4:71784909-71784928 | MS.gene57583:intron | 30.0% | |
| TCTTCTTATATGAGTTCACT+TGG | - | chr3.4:71784034-71784053 | MS.gene57583:CDS | 30.0% | |
| TTGCTTGAAGAAGTTATGAA+AGG | - | chr3.4:71785318-71785337 | MS.gene57583:CDS | 30.0% | |
| ! | ACATCCAAAGATGATGTTTT+GGG | + | chr3.4:71784691-71784710 | None:intergenic | 30.0% |
| ! | AGTCTCTCACATTTTCATAT+GGG | + | chr3.4:71783815-71783834 | None:intergenic | 30.0% |
| ! | CTAGCTAAGTTGAATTGAAA+AGG | + | chr3.4:71783467-71783486 | None:intergenic | 30.0% |
| ! | CTTTTCAATTCAACTTAGCT+AGG | - | chr3.4:71783465-71783484 | MS.gene57583:CDS | 30.0% |
| ! | TAGTCTCTCACATTTTCATA+TGG | + | chr3.4:71783816-71783835 | None:intergenic | 30.0% |
| !! | GGATGATGGATATATATACA+TGG | - | chr3.4:71785371-71785390 | MS.gene57583:intron | 30.0% |
| !! | TTCTGTTAGTGGACTAAATT+GGG | + | chr3.4:71783738-71783757 | None:intergenic | 30.0% |
| !! | TTTCTGTTAGTGGACTAAAT+TGG | + | chr3.4:71783739-71783758 | None:intergenic | 30.0% |
| AAAAGGGAATAAATACCGAG+AGG | + | chr3.4:71783444-71783463 | None:intergenic | 35.0% | |
| AACATTTGCATCTTGAGAAG+GGG | + | chr3.4:71783644-71783663 | None:intergenic | 35.0% | |
| AACCACTATCTAGATGCAAA+CGG | + | chr3.4:71784351-71784370 | None:intergenic | 35.0% | |
| AGACAAATTCTCCAACTCAA+TGG | + | chr3.4:71784017-71784036 | None:intergenic | 35.0% | |
| CACTTAAGAAGATCAAACTC+AGG | - | chr3.4:71784908-71784927 | MS.gene57583:intron | 35.0% | |
| CTACCAAGTATATCATGACA+TGG | + | chr3.4:71785054-71785073 | None:intergenic | 35.0% | |
| CTTAAGAAGATCAAACTCAG+GGG | - | chr3.4:71784910-71784929 | MS.gene57583:intron | 35.0% | |
| GAAAGGCTCTCTTAGTAATA+AGG | - | chr3.4:71785335-71785354 | MS.gene57583:CDS | 35.0% | |
| GAACATTTGCATCTTGAGAA+GGG | + | chr3.4:71783645-71783664 | None:intergenic | 35.0% | |
| GAAGAAGAATCAGACTTGAT+CGG | + | chr3.4:71783369-71783388 | None:intergenic | 35.0% | |
| GAATATCTAAATAGGCTGAG+AGG | - | chr3.4:71784973-71784992 | MS.gene57583:intron | 35.0% | |
| GTTCACAATAAAGTTCCACA+GGG | - | chr3.4:71783661-71783680 | MS.gene57583:intron | 35.0% | |
| GTTCCATGTCATGATATACT+TGG | - | chr3.4:71785048-71785067 | MS.gene57583:intron | 35.0% | |
| TAAACACCAATCTCTCCTAA+AGG | + | chr3.4:71784391-71784410 | None:intergenic | 35.0% | |
| TCTGATCTCAAACTGAAATC+AGG | + | chr3.4:71784154-71784173 | None:intergenic | 35.0% | |
| TGAACATTTGCATCTTGAGA+AGG | + | chr3.4:71783646-71783665 | None:intergenic | 35.0% | |
| TGTTCACAATAAAGTTCCAC+AGG | - | chr3.4:71783660-71783679 | MS.gene57583:intron | 35.0% | |
| TTCACTTGGATTCACAGAAA+TGG | - | chr3.4:71784048-71784067 | MS.gene57583:CDS | 35.0% | |
| TTGTATTTAGGTGACTGACA+AGG | - | chr3.4:71785293-71785312 | MS.gene57583:CDS | 35.0% | |
| ! | ACTTACTTAATTGGGTTGCA+AGG | - | chr3.4:71783856-71783875 | MS.gene57583:CDS | 35.0% |
| ! | AGAAGCATGTTTCGAATTTC+CGG | + | chr3.4:71784596-71784615 | None:intergenic | 35.0% |
| ! | ATTTCAGTTTGAGATCAGAC+GGG | - | chr3.4:71784155-71784174 | MS.gene57583:CDS | 35.0% |
| ! | CACATCCAAAGATGATGTTT+TGG | + | chr3.4:71784692-71784711 | None:intergenic | 35.0% |
| ! | GATTTCAGTTTGAGATCAGA+CGG | - | chr3.4:71784154-71784173 | MS.gene57583:CDS | 35.0% |
| !! | AGAACTGGCTTCGATTTTAT+TGG | - | chr3.4:71785478-71785497 | MS.gene57583:CDS | 35.0% |
| !! | GGTTGATACTTGATTTTCAC+GGG | - | chr3.4:71785212-71785231 | MS.gene57583:CDS | 35.0% |
| !! | GTGATTATGCTACTGCTTTT+GGG | - | chr3.4:71784935-71784954 | MS.gene57583:intron | 35.0% |
| !!! | GGGTTGATACTTGATTTTCA+CGG | - | chr3.4:71785211-71785230 | MS.gene57583:CDS | 35.0% |
| !!! | TTGTCAATTTTTTGGGGCTT+TGG | - | chr3.4:71785158-71785177 | MS.gene57583:intron | 35.0% |
| AAAGCAACCCAAAATTCAGC+AGG | - | chr3.4:71784123-71784142 | MS.gene57583:CDS | 40.0% | |
| AAGAATCAGACTTGATCGGA+AGG | + | chr3.4:71783365-71783384 | None:intergenic | 40.0% | |
| ACCACTATCTAGATGCAAAC+GGG | + | chr3.4:71784350-71784369 | None:intergenic | 40.0% | |
| ACTCTCTTTAGATGCCAACT+CGG | + | chr3.4:71784533-71784552 | None:intergenic | 40.0% | |
| AGTGCCCAAAACATCATCTT+TGG | - | chr3.4:71784684-71784703 | MS.gene57583:CDS | 40.0% | |
| ATGGTGACAAGTTAACCGAA+GGG | - | chr3.4:71784620-71784639 | MS.gene57583:CDS | 40.0% | |
| CAGGGCAATCCAATATCATT+AGG | - | chr3.4:71783533-71783552 | MS.gene57583:CDS | 40.0% | |
| CGGGTTGTTGAATTCATCAT+GGG | + | chr3.4:71784331-71784350 | None:intergenic | 40.0% | |
| GGCTCTCTTAGTAATAAGGA+TGG | - | chr3.4:71785339-71785358 | MS.gene57583:intron | 40.0% | |
| TATATCCATCATCCCTGACT+CGG | + | chr3.4:71785365-71785384 | None:intergenic | 40.0% | |
| TATCAACGTCTTGGCAAGAT+AGG | - | chr3.4:71784829-71784848 | MS.gene57583:CDS | 40.0% | |
| TCCATCACTCTTTCAGCTAT+AGG | + | chr3.4:71784415-71784434 | None:intergenic | 40.0% | |
| TCCTATAGCTGAAAGAGTGA+TGG | - | chr3.4:71784411-71784430 | MS.gene57583:CDS | 40.0% | |
| TCGAAACATGCTTCTTCTGA+TGG | - | chr3.4:71784601-71784620 | MS.gene57583:CDS | 40.0% | |
| TGATGAAAAGGCCATTGAGT+TGG | - | chr3.4:71784003-71784022 | MS.gene57583:CDS | 40.0% | |
| TTCGAGATTGAATCATGCGT+TGG | + | chr3.4:71783583-71783602 | None:intergenic | 40.0% | |
| ! | AAAGTTGCGAGGTACCAAAT+TGG | + | chr3.4:71783708-71783727 | None:intergenic | 40.0% |
| ! | AAGTTGCGAGGTACCAAATT+GGG | + | chr3.4:71783707-71783726 | None:intergenic | 40.0% |
| ! | ACGGGTTGTTGAATTCATCA+TGG | + | chr3.4:71784332-71784351 | None:intergenic | 40.0% |
| ! | CGTGATTATGCTACTGCTTT+TGG | - | chr3.4:71784934-71784953 | MS.gene57583:intron | 40.0% |
| ! | CTCAATGGCCTTTTCATCAT+TGG | + | chr3.4:71784002-71784021 | None:intergenic | 40.0% |
| ! | GATTTTCACGGGAATGTGTT+TGG | - | chr3.4:71785223-71785242 | MS.gene57583:CDS | 40.0% |
| ! | TTTCAGTTTGAGATCAGACG+GGG | - | chr3.4:71784156-71784175 | MS.gene57583:CDS | 40.0% |
| !! | AAAGATGATGTTTTGGGCAC+TGG | + | chr3.4:71784685-71784704 | None:intergenic | 40.0% |
| ACCAGACCATAGATGAGAAC+TGG | - | chr3.4:71785463-71785482 | MS.gene57583:CDS | 45.0% | |
| ACCCGTTTGCATCTAGATAG+TGG | - | chr3.4:71784346-71784365 | MS.gene57583:CDS | 45.0% | |
| ATTCATCATGGGAGCTGAAG+TGG | + | chr3.4:71784320-71784339 | None:intergenic | 45.0% | |
| CAAGCTTCTGATTCTTGCGT+CGG | - | chr3.4:71784505-71784524 | MS.gene57583:CDS | 45.0% | |
| GATAAGGCCGTGAGTAGTAA+AGG | - | chr3.4:71784742-71784761 | MS.gene57583:CDS | 45.0% | |
| GATGGTGACAAGTTAACCGA+AGG | - | chr3.4:71784619-71784638 | MS.gene57583:CDS | 45.0% | |
| GCGTCTTGGCCTAATGATAT+TGG | + | chr3.4:71783545-71783564 | None:intergenic | 45.0% | |
| GGAAGCTTCGATTGGATTAC+AGG | - | chr3.4:71784093-71784112 | MS.gene57583:CDS | 45.0% | |
| GGAATGAACCGATGTAGTTG+TGG | + | chr3.4:71784299-71784318 | None:intergenic | 45.0% | |
| GGGAATAAATACCGAGAGGA+CGG | + | chr3.4:71783440-71783459 | None:intergenic | 45.0% | |
| GGGTTGCAAGGAAATTGTCA+GGG | - | chr3.4:71783868-71783887 | MS.gene57583:CDS | 45.0% | |
| GTATATAGAAGGCAACCGAG+CGG | - | chr3.4:71784072-71784091 | MS.gene57583:CDS | 45.0% | |
| TAATAAGGATGGCCGAGTCA+GGG | - | chr3.4:71785350-71785369 | MS.gene57583:intron | 45.0% | |
| TCGAAGCCAGTTCTCATCTA+TGG | + | chr3.4:71785472-71785491 | None:intergenic | 45.0% | |
| TGATTCTTCTTCTTCCCCAC+CGG | - | chr3.4:71783377-71783396 | MS.gene57583:CDS | 45.0% | |
| TGGGTTGCAAGGAAATTGTC+AGG | - | chr3.4:71783867-71783886 | MS.gene57583:CDS | 45.0% | |
| TTCGTGTGCCACAACTACAT+CGG | - | chr3.4:71784288-71784307 | MS.gene57583:CDS | 45.0% | |
| ! | AGGCTCAACCTGCTGAATTT+TGG | + | chr3.4:71784134-71784153 | None:intergenic | 45.0% |
| ! | CTGGCTTCGATTTTATTGGC+AGG | - | chr3.4:71785482-71785501 | MS.gene57583:CDS | 45.0% |
| ! | GCTGAACCTTTAGGAGAGAT+TGG | - | chr3.4:71784382-71784401 | MS.gene57583:CDS | 45.0% |
| ! | GGCAAGCTTTATCAACGTCT+TGG | - | chr3.4:71784820-71784839 | MS.gene57583:CDS | 45.0% |
| ! | GGCTCAACCTGCTGAATTTT+GGG | + | chr3.4:71784133-71784152 | None:intergenic | 45.0% |
| ! | TTACTACTCACGGCCTTATC+TGG | + | chr3.4:71784742-71784761 | None:intergenic | 45.0% |
| ! | TTCAGTTTGAGATCAGACGG+GGG | - | chr3.4:71784157-71784176 | MS.gene57583:CDS | 45.0% |
| AGAAGGGGCAATAACAGTGC+TGG | + | chr3.4:71783629-71783648 | None:intergenic | 50.0% | |
| ATCCAATCGAAGCTTCCGCT+CGG | + | chr3.4:71784090-71784109 | None:intergenic | 50.0% | |
| ATCCAGCTCCTTCCACTTCT+GGG | + | chr3.4:71785436-71785455 | None:intergenic | 50.0% | |
| ATCTGCAGGCTCTTTCCCTT+CGG | + | chr3.4:71784638-71784657 | None:intergenic | 50.0% | |
| CATGTTGTCCCAGAAGTGGA+AGG | - | chr3.4:71785425-71785444 | MS.gene57583:intron | 50.0% | |
| CGACGAGCCTTTACTACTCA+CGG | + | chr3.4:71784752-71784771 | None:intergenic | 50.0% | |
| CGTGAGTAGTAAAGGCTCGT+CGG | - | chr3.4:71784750-71784769 | MS.gene57583:CDS | 50.0% | |
| CTCACATGTTGTCCCAGAAG+TGG | - | chr3.4:71785421-71785440 | MS.gene57583:intron | 50.0% | |
| GATGTAGTTGTGGCACACGA+AGG | + | chr3.4:71784289-71784308 | None:intergenic | 50.0% | |
| GCCAGTTCTCATCTATGGTC+TGG | + | chr3.4:71785467-71785486 | None:intergenic | 50.0% | |
| GGTACCTCGCAACTTTCTTG+CGG | - | chr3.4:71783712-71783731 | MS.gene57583:intron | 50.0% | |
| GTAATAAGGATGGCCGAGTC+AGG | - | chr3.4:71785349-71785368 | MS.gene57583:intron | 50.0% | |
| TATGTTGCCGAGGAGAGCTA+CGG | - | chr3.4:71784192-71784211 | MS.gene57583:CDS | 50.0% | |
| TCAACCAGCGACACAGTCTT+CGG | - | chr3.4:71784255-71784274 | MS.gene57583:CDS | 50.0% | |
| TGACGAAGAATCGTGCGTCT+TGG | + | chr3.4:71783559-71783578 | None:intergenic | 50.0% | |
| TGAGTTGCTCTATGTTGCCG+AGG | - | chr3.4:71784182-71784201 | MS.gene57583:CDS | 50.0% | |
| TGCAGGGGCCAATGATGAAA+AGG | - | chr3.4:71783991-71784010 | MS.gene57583:CDS | 50.0% | |
| TGTACGTGAGCAACATCTGC+AGG | + | chr3.4:71784652-71784671 | None:intergenic | 50.0% | |
| ! | TCTAGATAGTGGTTTGCGCG+TGG | - | chr3.4:71784357-71784376 | MS.gene57583:CDS | 50.0% |
| AACCGAGCGGAAGCTTCGAT+TGG | - | chr3.4:71784085-71784104 | MS.gene57583:CDS | 55.0% | |
| ACAACCGAAGACTGTGTCGC+TGG | + | chr3.4:71784262-71784281 | None:intergenic | 55.0% | |
| AGCGACACAGTCTTCGGTTG+TGG | - | chr3.4:71784261-71784280 | MS.gene57583:CDS | 55.0% | |
| CAGAAGTGGAAGGAGCTGGA+TGG | - | chr3.4:71785435-71785454 | MS.gene57583:intron | 55.0% | |
| CATCCAGCTCCTTCCACTTC+TGG | + | chr3.4:71785437-71785456 | None:intergenic | 55.0% | |
| CGAGGAGAGCTACGGTTACA+CGG | - | chr3.4:71784200-71784219 | MS.gene57583:CDS | 55.0% | |
| CGCGTGGTTGCTGAACCTTT+AGG | - | chr3.4:71784373-71784392 | MS.gene57583:CDS | 55.0% | |
| CGTCTTGGCAAGATAGGCAG+TGG | - | chr3.4:71784835-71784854 | MS.gene57583:CDS | 55.0% | |
| CGTGTAACCGTAGCTCTCCT+CGG | + | chr3.4:71784202-71784221 | None:intergenic | 55.0% | |
| CTTGGCAAGATAGGCAGTGG+TGG | - | chr3.4:71784838-71784857 | MS.gene57583:CDS | 55.0% | |
| GAGGAGAGCTACGGTTACAC+GGG | - | chr3.4:71784201-71784220 | MS.gene57583:CDS | 55.0% | |
| GCGACACAGTCTTCGGTTGT+GGG | - | chr3.4:71784262-71784281 | MS.gene57583:CDS | 55.0% | |
| GCTCGTCGGTCGCTAAGAAA+AGG | - | chr3.4:71784764-71784783 | MS.gene57583:CDS | 55.0% | |
| TGGAAGCAGTGAGGTGCACA+AGG | - | chr3.4:71784858-71784877 | MS.gene57583:CDS | 55.0% | |
| TGTTGCTCACGTACAGCGTC+AGG | - | chr3.4:71784657-71784676 | MS.gene57583:CDS | 55.0% | |
| ! | TTGAAGCGTCACCGTCCTCT+CGG | - | chr3.4:71783426-71783445 | MS.gene57583:CDS | 55.0% |
| AGGACGGTGACGCTTCAAGG+CGG | + | chr3.4:71783424-71783443 | None:intergenic | 60.0% | |
| GAGAGGACGGTGACGCTTCA+AGG | + | chr3.4:71783427-71783446 | None:intergenic | 60.0% | |
| GATGGCCGAGTCAGGGATGA+TGG | - | chr3.4:71785357-71785376 | MS.gene57583:intron | 60.0% | |
| GCTTCAAGGCGGCTTGAACG+TGG | + | chr3.4:71783413-71783432 | None:intergenic | 60.0% | |
| GTCCCAGAAGTGGAAGGAGC+TGG | - | chr3.4:71785431-71785450 | MS.gene57583:intron | 60.0% | |
| TCAAGGCGGCTTGAACGTGG+CGG | + | chr3.4:71783410-71783429 | None:intergenic | 60.0% | |
| TGGGCCGCAAGAAAGTTGCG+AGG | + | chr3.4:71783719-71783738 | None:intergenic | 60.0% | |
| ! | AGGCAGTGGTGGAAGCAGTG+AGG | - | chr3.4:71784849-71784868 | MS.gene57583:CDS | 60.0% |
| ! | TGAACGTGGCGGAGGAAGTC+CGG | + | chr3.4:71783399-71783418 | None:intergenic | 60.0% |
| !! | TTCTTGCGTCGGTGCCGAGT+TGG | - | chr3.4:71784516-71784535 | MS.gene57583:CDS | 60.0% |
| AGGCGGCTTGAACGTGGCGG+AGG | + | chr3.4:71783407-71783426 | None:intergenic | 70.0% | |
| ! | ACGTGGCGGAGGAAGTCCGG+TGG | + | chr3.4:71783396-71783415 | None:intergenic | 70.0% |
| ! | CGTGGCGGAGGAAGTCCGGT+GGG | + | chr3.4:71783395-71783414 | None:intergenic | 70.0% |
| ! | GTGGCGGAGGAAGTCCGGTG+GGG | + | chr3.4:71783394-71783413 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 71783345 | 71785539 | 71783345 | ID=MS.gene57583 |
| chr3.4 | mRNA | 71783345 | 71785539 | 71783345 | ID=MS.gene57583.t1;Parent=MS.gene57583 |
| chr3.4 | exon | 71785437 | 71785539 | 71785437 | ID=MS.gene57583.t1.exon1;Parent=MS.gene57583.t1 |
| chr3.4 | CDS | 71785437 | 71785539 | 71785437 | ID=cds.MS.gene57583.t1;Parent=MS.gene57583.t1 |
| chr3.4 | exon | 71785202 | 71785354 | 71785202 | ID=MS.gene57583.t1.exon2;Parent=MS.gene57583.t1 |
| chr3.4 | CDS | 71785202 | 71785354 | 71785202 | ID=cds.MS.gene57583.t1;Parent=MS.gene57583.t1 |
| chr3.4 | exon | 71783855 | 71784888 | 71783855 | ID=MS.gene57583.t1.exon3;Parent=MS.gene57583.t1 |
| chr3.4 | CDS | 71783855 | 71784888 | 71783855 | ID=cds.MS.gene57583.t1;Parent=MS.gene57583.t1 |
| chr3.4 | exon | 71783345 | 71783581 | 71783345 | ID=MS.gene57583.t1.exon4;Parent=MS.gene57583.t1 |
| chr3.4 | CDS | 71783345 | 71783581 | 71783345 | ID=cds.MS.gene57583.t1;Parent=MS.gene57583.t1 |
| Gene Sequence |
| Protein sequence |
