Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57768.t1 | XP_003610314.1 | 97.1 | 482 | 10 | 2 | 1 | 480 | 252 | 731 | 4.90E-267 | 929.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57768.t1 | Q8RWS9 | 79.6 | 480 | 92 | 4 | 1 | 477 | 241 | 717 | 2.9e-220 | 765.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57768.t1 | G7JGP4 | 97.1 | 482 | 10 | 2 | 1 | 480 | 252 | 731 | 3.5e-267 | 929.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049424 | MS.gene57768 | 0.827828 | 1.26E-54 | -1.69E-46 |
| MS.gene049653 | MS.gene57768 | 0.823885 | 1.09E-53 | -1.69E-46 |
| MS.gene049983 | MS.gene57768 | 0.800317 | 1.53E-48 | -1.69E-46 |
| MS.gene050105 | MS.gene57768 | 0.802629 | 5.12E-49 | -1.69E-46 |
| MS.gene050273 | MS.gene57768 | 0.811974 | 5.35E-51 | -1.69E-46 |
| MS.gene050559 | MS.gene57768 | 0.822398 | 2.42E-53 | -1.69E-46 |
| MS.gene050561 | MS.gene57768 | 0.815597 | 8.52E-52 | -1.69E-46 |
| MS.gene051926 | MS.gene57768 | -0.805526 | 1.28E-49 | -1.69E-46 |
| MS.gene052516 | MS.gene57768 | 0.801328 | 9.48E-49 | -1.69E-46 |
| MS.gene052674 | MS.gene57768 | 0.813677 | 2.27E-51 | -1.69E-46 |
| MS.gene052675 | MS.gene57768 | 0.818478 | 1.92E-52 | -1.69E-46 |
| MS.gene052677 | MS.gene57768 | 0.817752 | 2.80E-52 | -1.69E-46 |
| MS.gene053006 | MS.gene57768 | 0.803037 | 4.22E-49 | -1.69E-46 |
| MS.gene053166 | MS.gene57768 | 0.801563 | 8.49E-49 | -1.69E-46 |
| MS.gene05350 | MS.gene57768 | 0.809541 | 1.80E-50 | -1.69E-46 |
| MS.gene053575 | MS.gene57768 | 0.803803 | 2.93E-49 | -1.69E-46 |
| MS.gene053931 | MS.gene57768 | 0.808746 | 2.66E-50 | -1.69E-46 |
| MS.gene054651 | MS.gene57768 | 0.816206 | 6.23E-52 | -1.69E-46 |
| MS.gene055230 | MS.gene57768 | 0.842972 | 1.86E-58 | -1.69E-46 |
| MS.gene055818 | MS.gene57768 | 0.825876 | 3.69E-54 | -1.69E-46 |
| MS.gene057208 | MS.gene57768 | 0.820996 | 5.11E-53 | -1.69E-46 |
| MS.gene058008 | MS.gene57768 | 0.833745 | 4.47E-56 | -1.69E-46 |
| MS.gene058009 | MS.gene57768 | 0.855834 | 4.84E-62 | -1.69E-46 |
| MS.gene058010 | MS.gene57768 | 0.807965 | 3.91E-50 | -1.69E-46 |
| MS.gene058625 | MS.gene57768 | 0.806844 | 6.75E-50 | -1.69E-46 |
| MS.gene058783 | MS.gene57768 | 0.834994 | 2.17E-56 | -1.69E-46 |
| MS.gene058979 | MS.gene57768 | 0.810409 | 1.17E-50 | -1.69E-46 |
| MS.gene060322 | MS.gene57768 | 0.838936 | 2.14E-57 | -1.69E-46 |
| MS.gene060935 | MS.gene57768 | 0.817428 | 3.31E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57768.t1 | MTR_4g130820 | 97.925 | 482 | 6 | 2 | 1 | 480 | 252 | 731 | 0.0 | 977 |
| MS.gene57768.t1 | MTR_3g091080 | 62.474 | 485 | 169 | 7 | 1 | 478 | 234 | 712 | 0.0 | 627 |
| MS.gene57768.t1 | MTR_1g028370 | 61.807 | 487 | 170 | 7 | 1 | 478 | 236 | 715 | 0.0 | 622 |
| MS.gene57768.t1 | MTR_2g460590 | 57.114 | 499 | 187 | 7 | 1 | 480 | 200 | 690 | 0.0 | 568 |
| MS.gene57768.t1 | MTR_3g109030 | 57.143 | 504 | 184 | 8 | 1 | 480 | 230 | 725 | 0.0 | 566 |
| MS.gene57768.t1 | MTR_2g094860 | 58.246 | 479 | 190 | 7 | 1 | 475 | 229 | 701 | 0.0 | 559 |
| MS.gene57768.t1 | MTR_1g064240 | 55.466 | 494 | 200 | 9 | 1 | 480 | 223 | 710 | 0.0 | 543 |
| MS.gene57768.t1 | MTR_7g117310 | 55.852 | 487 | 193 | 8 | 3 | 476 | 238 | 715 | 0.0 | 540 |
| MS.gene57768.t1 | MTR_7g117310 | 55.852 | 487 | 193 | 8 | 3 | 476 | 250 | 727 | 0.0 | 539 |
| MS.gene57768.t1 | MTR_7g117310 | 55.852 | 487 | 193 | 8 | 3 | 476 | 184 | 661 | 0.0 | 539 |
| MS.gene57768.t1 | MTR_4g058730 | 62.044 | 411 | 149 | 4 | 1 | 409 | 211 | 616 | 0.0 | 539 |
| MS.gene57768.t1 | MTR_8g027755 | 53.750 | 480 | 210 | 7 | 4 | 474 | 241 | 717 | 0.0 | 531 |
| MS.gene57768.t1 | MTR_7g034605 | 53.239 | 494 | 205 | 7 | 1 | 477 | 196 | 680 | 0.0 | 523 |
| MS.gene57768.t1 | MTR_3g088875 | 51.969 | 508 | 213 | 6 | 1 | 480 | 188 | 692 | 0.0 | 523 |
| MS.gene57768.t1 | MTR_8g464570 | 39.756 | 410 | 231 | 7 | 7 | 405 | 220 | 624 | 9.77e-94 | 298 |
| MS.gene57768.t1 | MTR_2g081110 | 39.706 | 408 | 224 | 9 | 11 | 405 | 222 | 620 | 2.67e-90 | 289 |
| MS.gene57768.t1 | MTR_7g012260 | 40.338 | 414 | 229 | 7 | 2 | 405 | 267 | 672 | 3.82e-90 | 290 |
| MS.gene57768.t1 | MTR_6g477760 | 41.274 | 424 | 209 | 11 | 9 | 409 | 284 | 690 | 6.91e-85 | 275 |
| MS.gene57768.t1 | MTR_6g075290 | 40.654 | 428 | 223 | 11 | 12 | 422 | 153 | 566 | 5.77e-83 | 267 |
| MS.gene57768.t1 | MTR_6g075290 | 40.654 | 428 | 223 | 11 | 12 | 422 | 314 | 727 | 2.48e-82 | 270 |
| MS.gene57768.t1 | MTR_6g075290 | 40.654 | 428 | 223 | 11 | 12 | 422 | 355 | 768 | 7.99e-82 | 269 |
| MS.gene57768.t1 | MTR_5g007630 | 38.534 | 423 | 224 | 13 | 12 | 418 | 333 | 735 | 1.88e-78 | 259 |
| MS.gene57768.t1 | MTR_6g075440 | 37.192 | 406 | 223 | 10 | 14 | 402 | 335 | 725 | 1.31e-76 | 255 |
| MS.gene57768.t1 | MTR_6g075440 | 36.740 | 411 | 230 | 10 | 14 | 408 | 335 | 731 | 1.37e-76 | 255 |
| MS.gene57768.t1 | MTR_6g076060 | 39.225 | 413 | 220 | 11 | 11 | 407 | 61 | 458 | 6.69e-75 | 244 |
| MS.gene57768.t1 | MTR_6g075390 | 35.864 | 382 | 209 | 10 | 27 | 385 | 290 | 658 | 1.21e-58 | 205 |
| MS.gene57768.t1 | MTR_6g075410 | 34.951 | 412 | 228 | 13 | 11 | 403 | 262 | 652 | 1.35e-57 | 202 |
| MS.gene57768.t1 | MTR_4g113530 | 25.728 | 206 | 150 | 2 | 122 | 326 | 238 | 441 | 1.97e-15 | 79.7 |
| MS.gene57768.t1 | MTR_2g006870 | 24.044 | 183 | 138 | 1 | 123 | 305 | 262 | 443 | 5.27e-13 | 72.0 |
| MS.gene57768.t1 | MTR_3g108320 | 22.660 | 203 | 154 | 2 | 124 | 326 | 243 | 442 | 1.24e-11 | 67.4 |
| MS.gene57768.t1 | MTR_3g108320 | 22.439 | 205 | 156 | 2 | 122 | 326 | 241 | 442 | 1.43e-11 | 67.0 |
| MS.gene57768.t1 | MTR_3g108320 | 22.439 | 205 | 156 | 2 | 122 | 326 | 241 | 442 | 1.63e-11 | 67.0 |
| MS.gene57768.t1 | MTR_5g077770 | 25.414 | 181 | 132 | 2 | 123 | 303 | 282 | 459 | 2.31e-11 | 66.6 |
| MS.gene57768.t1 | MTR_8g046440 | 20.856 | 187 | 147 | 1 | 123 | 309 | 34 | 219 | 5.64e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57768.t1 | AT5G57940 | 79.167 | 480 | 94 | 4 | 1 | 477 | 241 | 717 | 0.0 | 797 |
| MS.gene57768.t1 | AT5G57940 | 79.167 | 480 | 94 | 4 | 1 | 477 | 241 | 717 | 0.0 | 797 |
| MS.gene57768.t1 | AT5G57940 | 79.167 | 480 | 94 | 4 | 1 | 477 | 234 | 710 | 0.0 | 796 |
| MS.gene57768.t1 | AT2G23980 | 76.375 | 491 | 103 | 5 | 1 | 478 | 256 | 746 | 0.0 | 776 |
| MS.gene57768.t1 | AT2G23980 | 76.375 | 491 | 103 | 5 | 1 | 478 | 256 | 746 | 0.0 | 776 |
| MS.gene57768.t1 | AT2G23980 | 76.375 | 491 | 103 | 5 | 1 | 478 | 229 | 719 | 0.0 | 776 |
| MS.gene57768.t1 | AT2G23980 | 76.375 | 491 | 103 | 5 | 1 | 478 | 256 | 746 | 0.0 | 776 |
| MS.gene57768.t1 | AT2G23980 | 76.375 | 491 | 103 | 5 | 1 | 478 | 256 | 746 | 0.0 | 776 |
| MS.gene57768.t1 | AT2G23980 | 76.375 | 491 | 103 | 5 | 1 | 478 | 256 | 746 | 0.0 | 776 |
| MS.gene57768.t1 | AT4G30560 | 76.349 | 482 | 104 | 4 | 1 | 478 | 230 | 705 | 0.0 | 771 |
| MS.gene57768.t1 | AT4G30560 | 76.349 | 482 | 104 | 4 | 1 | 478 | 230 | 705 | 0.0 | 771 |
| MS.gene57768.t1 | AT4G30560 | 76.349 | 482 | 104 | 4 | 1 | 478 | 230 | 705 | 0.0 | 771 |
| MS.gene57768.t1 | AT4G30560 | 76.349 | 482 | 104 | 4 | 1 | 478 | 256 | 731 | 0.0 | 771 |
| MS.gene57768.t1 | AT4G30560 | 76.349 | 482 | 104 | 4 | 1 | 478 | 256 | 731 | 0.0 | 771 |
| MS.gene57768.t1 | AT2G23980 | 72.957 | 514 | 103 | 6 | 1 | 478 | 256 | 769 | 0.0 | 763 |
| MS.gene57768.t1 | AT2G23980 | 72.957 | 514 | 103 | 6 | 1 | 478 | 256 | 769 | 0.0 | 763 |
| MS.gene57768.t1 | AT2G23980 | 72.957 | 514 | 103 | 6 | 1 | 478 | 256 | 769 | 0.0 | 763 |
| MS.gene57768.t1 | AT2G23980 | 72.957 | 514 | 103 | 6 | 1 | 478 | 256 | 769 | 0.0 | 763 |
| MS.gene57768.t1 | AT1G15990 | 69.960 | 496 | 129 | 5 | 1 | 477 | 244 | 738 | 0.0 | 701 |
| MS.gene57768.t1 | AT1G19780 | 68.924 | 502 | 133 | 4 | 1 | 480 | 250 | 750 | 0.0 | 698 |
| MS.gene57768.t1 | AT1G19780 | 68.924 | 502 | 133 | 4 | 1 | 480 | 39 | 539 | 0.0 | 696 |
| MS.gene57768.t1 | AT5G53130 | 59.959 | 487 | 179 | 5 | 1 | 478 | 237 | 716 | 0.0 | 603 |
| MS.gene57768.t1 | AT1G01340 | 58.300 | 494 | 181 | 6 | 1 | 477 | 221 | 706 | 0.0 | 601 |
| MS.gene57768.t1 | AT1G01340 | 58.300 | 494 | 181 | 6 | 1 | 477 | 216 | 701 | 0.0 | 600 |
| MS.gene57768.t1 | AT4G01010 | 57.350 | 483 | 187 | 5 | 1 | 475 | 221 | 692 | 0.0 | 577 |
| MS.gene57768.t1 | AT4G01010 | 57.350 | 483 | 187 | 5 | 1 | 475 | 221 | 692 | 0.0 | 577 |
| MS.gene57768.t1 | AT4G30360 | 56.064 | 503 | 188 | 8 | 1 | 480 | 228 | 720 | 0.0 | 561 |
| MS.gene57768.t1 | AT2G24610 | 55.512 | 508 | 188 | 7 | 1 | 478 | 227 | 726 | 0.0 | 558 |
| MS.gene57768.t1 | AT2G46430 | 54.786 | 491 | 199 | 8 | 1 | 478 | 225 | 705 | 0.0 | 557 |
| MS.gene57768.t1 | AT2G46430 | 54.786 | 491 | 199 | 8 | 1 | 478 | 225 | 705 | 0.0 | 557 |
| MS.gene57768.t1 | AT2G24610 | 55.512 | 508 | 188 | 7 | 1 | 478 | 242 | 741 | 0.0 | 556 |
| MS.gene57768.t1 | AT2G28260 | 57.350 | 483 | 176 | 8 | 1 | 477 | 220 | 678 | 0.0 | 552 |
| MS.gene57768.t1 | AT2G28260 | 57.350 | 483 | 176 | 8 | 1 | 477 | 180 | 638 | 0.0 | 551 |
| MS.gene57768.t1 | AT5G14870 | 52.418 | 517 | 206 | 8 | 1 | 480 | 192 | 705 | 0.0 | 540 |
| MS.gene57768.t1 | AT3G48010 | 52.745 | 510 | 202 | 9 | 1 | 474 | 198 | 704 | 0.0 | 532 |
| MS.gene57768.t1 | AT2G46440 | 49.777 | 448 | 212 | 7 | 1 | 440 | 1 | 443 | 2.86e-146 | 426 |
| MS.gene57768.t1 | AT2G46440 | 49.777 | 448 | 212 | 7 | 1 | 440 | 179 | 621 | 2.59e-144 | 427 |
| MS.gene57768.t1 | AT2G46450 | 44.008 | 484 | 243 | 9 | 1 | 477 | 143 | 605 | 1.72e-135 | 404 |
| MS.gene57768.t1 | AT2G46450 | 44.008 | 484 | 243 | 9 | 1 | 477 | 156 | 618 | 3.50e-135 | 404 |
| MS.gene57768.t1 | AT2G46450 | 44.008 | 484 | 243 | 9 | 1 | 477 | 179 | 641 | 9.93e-135 | 403 |
| MS.gene57768.t1 | AT2G46450 | 44.008 | 484 | 243 | 9 | 1 | 477 | 179 | 641 | 9.93e-135 | 403 |
| MS.gene57768.t1 | AT5G15410 | 38.875 | 409 | 235 | 6 | 4 | 402 | 273 | 676 | 1.32e-88 | 286 |
| MS.gene57768.t1 | AT5G15410 | 38.875 | 409 | 235 | 6 | 4 | 402 | 274 | 677 | 1.45e-88 | 286 |
| MS.gene57768.t1 | AT5G54250 | 38.983 | 413 | 229 | 9 | 7 | 405 | 242 | 645 | 9.76e-88 | 283 |
| MS.gene57768.t1 | AT5G54250 | 38.983 | 413 | 229 | 9 | 7 | 405 | 242 | 645 | 9.76e-88 | 283 |
| MS.gene57768.t1 | AT5G54250 | 38.983 | 413 | 229 | 9 | 7 | 405 | 242 | 645 | 9.76e-88 | 283 |
| MS.gene57768.t1 | AT3G17690 | 38.732 | 426 | 231 | 12 | 1 | 413 | 312 | 720 | 5.31e-84 | 274 |
| MS.gene57768.t1 | AT5G54250 | 38.015 | 413 | 228 | 10 | 7 | 405 | 242 | 640 | 5.06e-82 | 268 |
| MS.gene57768.t1 | AT3G17700 | 40.191 | 418 | 216 | 13 | 1 | 402 | 346 | 745 | 8.20e-81 | 266 |
| MS.gene57768.t1 | AT3G17690 | 39.466 | 337 | 184 | 8 | 1 | 333 | 312 | 632 | 1.12e-70 | 236 |
| MS.gene57768.t1 | AT3G17700 | 40.698 | 344 | 182 | 10 | 1 | 340 | 346 | 671 | 5.74e-69 | 233 |
| MS.gene57768.t1 | AT3G17690 | 36.916 | 214 | 122 | 6 | 1 | 210 | 312 | 516 | 1.48e-33 | 133 |
| MS.gene57768.t1 | AT3G02850 | 27.128 | 188 | 132 | 3 | 122 | 307 | 273 | 457 | 1.16e-13 | 73.9 |
| MS.gene57768.t1 | AT3G02850 | 27.128 | 188 | 132 | 3 | 122 | 307 | 273 | 457 | 1.58e-13 | 73.6 |
| MS.gene57768.t1 | AT3G02850 | 26.064 | 188 | 134 | 3 | 122 | 307 | 273 | 457 | 2.14e-13 | 72.8 |
| MS.gene57768.t1 | AT4G22200 | 22.995 | 187 | 143 | 1 | 123 | 309 | 263 | 448 | 6.93e-13 | 71.2 |
| MS.gene57768.t1 | AT5G37500 | 25.683 | 183 | 133 | 2 | 123 | 305 | 257 | 436 | 6.95e-13 | 71.6 |
| MS.gene57768.t1 | AT5G37500 | 25.683 | 183 | 133 | 2 | 123 | 305 | 257 | 436 | 6.98e-13 | 71.6 |
| MS.gene57768.t1 | AT5G37500 | 25.683 | 183 | 133 | 2 | 123 | 305 | 203 | 382 | 7.43e-13 | 71.6 |
| MS.gene57768.t1 | AT5G37500 | 25.683 | 183 | 133 | 2 | 123 | 305 | 257 | 436 | 7.61e-13 | 71.6 |
| MS.gene57768.t1 | AT4G22200 | 22.995 | 187 | 143 | 1 | 123 | 309 | 263 | 448 | 9.84e-13 | 71.2 |
| MS.gene57768.t1 | AT5G46240 | 22.000 | 200 | 155 | 1 | 122 | 321 | 245 | 443 | 3.63e-12 | 69.3 |
| MS.gene57768.t1 | AT4G32650 | 23.913 | 184 | 139 | 1 | 124 | 307 | 276 | 458 | 2.28e-11 | 66.6 |
| MS.gene57768.t1 | AT2G26650 | 23.415 | 205 | 154 | 2 | 123 | 326 | 134 | 336 | 3.14e-11 | 66.2 |
| MS.gene57768.t1 | AT2G26650 | 23.415 | 205 | 154 | 2 | 123 | 326 | 239 | 441 | 3.35e-11 | 66.2 |
| MS.gene57768.t1 | AT4G32650 | 23.913 | 184 | 139 | 1 | 124 | 307 | 276 | 458 | 3.42e-11 | 66.2 |
| MS.gene57768.t1 | AT4G32650 | 23.913 | 184 | 139 | 1 | 124 | 307 | 276 | 458 | 3.94e-11 | 65.9 |
Find 128 sgRNAs with CRISPR-Local
Find 237 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAATATCTTTACTGTTTA+TGG | 0.022733 | 8.4:-3214794 | MS.gene57768:CDS |
| ACACGCTCTCTAAGCTCTTT+TGG | 0.222016 | 8.4:+3213491 | None:intergenic |
| CTCTTAAGTTCTGAAGTTAA+TGG | 0.232977 | 8.4:+3215320 | None:intergenic |
| GGTTCCACTATTTGAGAGTA+TGG | 0.306379 | 8.4:-3212837 | MS.gene57768:CDS |
| TCAATAGCACTTGCCATATC+AGG | 0.329052 | 8.4:-3214168 | MS.gene57768:CDS |
| GGCAAACTTTGAGGCTAATA+AGG | 0.330312 | 8.4:+3212283 | None:intergenic |
| ATCCTCTTCGCGCTTCTGAT+TGG | 0.344987 | 8.4:-3214141 | MS.gene57768:CDS |
| CAGAGAATACTTATATTGTT+CGG | 0.346563 | 8.4:-3212763 | MS.gene57768:CDS |
| AGCACCCGCCCATGCAGTTT+CGG | 0.362208 | 8.4:+3215280 | None:intergenic |
| AAATTAATTACCTTAAATTC+TGG | 0.365686 | 8.4:+3214763 | None:intergenic |
| TTTCAGCTCATCGGCGGTTA+AGG | 0.369784 | 8.4:+3212520 | None:intergenic |
| ACTGATTATTTGCAGATAGT+TGG | 0.381899 | 8.4:-3215068 | MS.gene57768:intron |
| CACCAACTCCCTGGCAGTCT+TGG | 0.398928 | 8.4:+3212223 | None:intergenic |
| ATCTTTACTGTTTATGGTGG+GGG | 0.405257 | 8.4:-3214788 | MS.gene57768:CDS |
| TCACTGCAGTACCCTTGGTC+AGG | 0.408201 | 8.4:-3214229 | MS.gene57768:intron |
| ATATCTCTTCGAAGATCCTT+TGG | 0.408228 | 8.4:+3213398 | None:intergenic |
| TATTAAGCGTCATCTCTGTT+TGG | 0.412230 | 8.4:-3213378 | MS.gene57768:CDS |
| CTCTCATTTCCTCCAGCCTA+AGG | 0.417185 | 8.4:+3213558 | None:intergenic |
| ATGAAAAGCATCTCATCAAC+TGG | 0.418687 | 8.4:+3212731 | None:intergenic |
| TTTAAGCAAGCCTTGTCATC+TGG | 0.423538 | 8.4:-3214843 | MS.gene57768:CDS |
| TGGAAGATTAGAACCAGATC+TGG | 0.424177 | 8.4:+3212589 | None:intergenic |
| TAGAACCAGATCTGGGGTCC+AGG | 0.433905 | 8.4:+3212597 | None:intergenic |
| ATCGACTCGCCAAGACTGCC+AGG | 0.437488 | 8.4:-3212232 | MS.gene57768:CDS |
| AGAGAATACTTATATTGTTC+GGG | 0.441039 | 8.4:-3212762 | MS.gene57768:CDS |
| CACTATAACCTTCCGTGTGC+TGG | 0.445320 | 8.4:+3214946 | None:intergenic |
| TGGGCCCTGGACCCCAGATC+TGG | 0.448919 | 8.4:-3212602 | MS.gene57768:CDS |
| GTGTCTTTGCCGAAACTGCA+TGG | 0.456842 | 8.4:-3215289 | MS.gene57768:CDS |
| TTTCAACCGCACATATCTAA+AGG | 0.457653 | 8.4:-3212657 | MS.gene57768:CDS |
| TCAGTCCCTTACCCTTAGGC+TGG | 0.460097 | 8.4:-3213570 | MS.gene57768:CDS |
| TAATAAGGCGGCACCAAGGC+TGG | 0.460595 | 8.4:+3212298 | None:intergenic |
| GAAGAGGATGAGACCTGATA+TGG | 0.460796 | 8.4:+3214155 | None:intergenic |
| AACGGCAGTTCCTCCAGCCT+TGG | 0.469815 | 8.4:-3212311 | MS.gene57768:CDS |
| TTTCCTCCAGCCTAAGGGTA+AGG | 0.471966 | 8.4:+3213564 | None:intergenic |
| TCATCCATACTCTCAAATAG+TGG | 0.476542 | 8.4:+3212833 | None:intergenic |
| TCTGCTGTAAAGTCAGGCTC+AGG | 0.479099 | 8.4:+3212185 | None:intergenic |
| ACTCTCAACAATGGAGAACC+TGG | 0.480377 | 8.4:-3212436 | MS.gene57768:CDS |
| TGGTTTCAGTCTCTCACATA+TGG | 0.485163 | 8.4:+3212796 | None:intergenic |
| TTACTTCACTGCAGTACCCT+TGG | 0.485316 | 8.4:-3214234 | MS.gene57768:intron |
| CTGTTTGGCTTTAGTGAGGA+GGG | 0.485661 | 8.4:-3213363 | MS.gene57768:intron |
| CGCCAAGACTGCCAGGGAGT+TGG | 0.489302 | 8.4:-3212225 | MS.gene57768:CDS |
| ATATCTTTACTGTTTATGGT+GGG | 0.494622 | 8.4:-3214790 | MS.gene57768:CDS |
| GCATCATCTGCTGTAAAGTC+AGG | 0.505947 | 8.4:+3212179 | None:intergenic |
| ACACGGAAGGTTATAGTGCC+TGG | 0.506802 | 8.4:-3214941 | MS.gene57768:CDS |
| TTCAAACTAGCACATATCCT+GGG | 0.507377 | 8.4:-3214203 | MS.gene57768:CDS |
| TCAGAACTTAAGAGAACAGC+TGG | 0.509746 | 8.4:-3215311 | MS.gene57768:CDS |
| CTTCAAACTAGCACATATCC+TGG | 0.511018 | 8.4:-3214204 | MS.gene57768:CDS |
| TATCTTTACTGTTTATGGTG+GGG | 0.514479 | 8.4:-3214789 | MS.gene57768:CDS |
| AATATCTTTACTGTTTATGG+TGG | 0.516798 | 8.4:-3214791 | MS.gene57768:CDS |
| TAGACGTCTTCACAGTAGAC+AGG | 0.517455 | 8.4:-3212480 | MS.gene57768:CDS |
| TTGAATAAAACAAGCAGCCC+AGG | 0.520184 | 8.4:+3212418 | None:intergenic |
| GGAAGATTAGAACCAGATCT+GGG | 0.521641 | 8.4:+3212590 | None:intergenic |
| ATCTTCAGTCCCTTACCCTT+AGG | 0.524427 | 8.4:-3213574 | MS.gene57768:CDS |
| TAAAGGAGGCTGAGTTCTGT+GGG | 0.524904 | 8.4:-3212640 | MS.gene57768:CDS |
| CACTGCAGTACCCTTGGTCA+GGG | 0.528148 | 8.4:-3214228 | MS.gene57768:intron |
| TCTGTTTGGCTTTAGTGAGG+AGG | 0.529031 | 8.4:-3213364 | MS.gene57768:CDS |
| AGTGCGCGCGGCAAACTTTG+AGG | 0.530370 | 8.4:+3212274 | None:intergenic |
| CTAATCTTCCAACCTCTACT+CGG | 0.532003 | 8.4:-3212577 | MS.gene57768:CDS |
| CTTTGCCGAAACTGCATGGG+CGG | 0.533622 | 8.4:-3215285 | MS.gene57768:CDS |
| AGAATGCTTGCCGTGACAAT+GGG | 0.537644 | 8.4:-3214998 | MS.gene57768:CDS |
| TTGTAATTTCACCAACTCCC+TGG | 0.539371 | 8.4:+3212214 | None:intergenic |
| CAGAATGCTTGCCGTGACAA+TGG | 0.542017 | 8.4:-3214999 | MS.gene57768:CDS |
| TTCCTCCAGCCTAAGGGTAA+GGG | 0.548812 | 8.4:+3213565 | None:intergenic |
| TGTCTTTGCCGAAACTGCAT+GGG | 0.548973 | 8.4:-3215288 | MS.gene57768:CDS |
| AATTATGAAGCTTCGTCAGA+AGG | 0.551043 | 8.4:-3212366 | MS.gene57768:CDS |
| ATCTCTGTTTGGCTTTAGTG+AGG | 0.554542 | 8.4:-3213367 | MS.gene57768:CDS |
| ACCACAGATGGTGGGAGGAG+TGG | 0.554774 | 8.4:-3212683 | MS.gene57768:CDS |
| GCTTCTGATTGGCAACATGC+AGG | 0.559066 | 8.4:-3214130 | MS.gene57768:intron |
| GTCCCTTACCCTTAGGCTGG+AGG | 0.561500 | 8.4:-3213567 | MS.gene57768:CDS |
| GGCAACAAATTTCAGCTCAT+CGG | 0.562924 | 8.4:+3212511 | None:intergenic |
| CTGCTGTAAAGTCAGGCTCA+GGG | 0.566862 | 8.4:+3212186 | None:intergenic |
| CTTGAGAGTGTTACCACAGA+TGG | 0.567620 | 8.4:-3212695 | MS.gene57768:CDS |
| TTCACAGTCCGAGTAGAGGT+TGG | 0.569798 | 8.4:+3212569 | None:intergenic |
| CGCCTTCACAGTCCGAGTAG+AGG | 0.572148 | 8.4:+3212565 | None:intergenic |
| TTGAACGCAATGACTCATGC+TGG | 0.573357 | 8.4:-3215022 | MS.gene57768:CDS |
| AACAAATTTCAGCTCATCGG+CGG | 0.575197 | 8.4:+3212514 | None:intergenic |
| TGGAGGAAATGAGAGTCAAA+AGG | 0.578064 | 8.4:-3213550 | MS.gene57768:CDS |
| ATTGAAAAGATAACCTCCCC+AGG | 0.578411 | 8.4:+3214186 | None:intergenic |
| CTAAAGGAGGCTGAGTTCTG+TGG | 0.580756 | 8.4:-3212641 | MS.gene57768:CDS |
| AATACTTATATTGTTCGGGA+AGG | 0.582365 | 8.4:-3212758 | MS.gene57768:CDS |
| TTTGCCGAAACTGCATGGGC+GGG | 0.583820 | 8.4:-3215284 | MS.gene57768:CDS |
| AGTTTGAAGCCCCTGACCAA+GGG | 0.585386 | 8.4:+3214218 | None:intergenic |
| ATTCCATAATCAAAAGGTGG+AGG | 0.588062 | 8.4:+3214867 | None:intergenic |
| ACCACTCCTCCCACCATCTG+TGG | 0.589869 | 8.4:+3212682 | None:intergenic |
| GTATGATCAATATAAGTGGT+TGG | 0.589892 | 8.4:-3213462 | MS.gene57768:CDS |
| AGAACCAGATCTGGGGTCCA+GGG | 0.590157 | 8.4:+3212598 | None:intergenic |
| TCTCATTTCCTCCAGCCTAA+GGG | 0.590500 | 8.4:+3213559 | None:intergenic |
| GAGAGTGTTACCACAGATGG+TGG | 0.593359 | 8.4:-3212692 | MS.gene57768:CDS |
| GGCGGTATGATCAATATAAG+TGG | 0.596596 | 8.4:-3213466 | MS.gene57768:CDS |
| GTGAAGACGTCTAAACTGAC+TGG | 0.596611 | 8.4:+3212490 | None:intergenic |
| AAGAGCTTAGAGAGCGTGTG+AGG | 0.598434 | 8.4:-3213487 | MS.gene57768:CDS |
| GTATTCTCTGTAAATAAACA+TGG | 0.598980 | 8.4:+3212776 | None:intergenic |
| TAGTTTGAAGCCCCTGACCA+AGG | 0.599761 | 8.4:+3214217 | None:intergenic |
| TTTAGTTCAGAGTCTACCAA+AGG | 0.600713 | 8.4:-3213414 | MS.gene57768:CDS |
| ACTGCAGTACCCTTGGTCAG+GGG | 0.604670 | 8.4:-3214227 | MS.gene57768:intron |
| CAGTCTTGGCGAGTCGATTG+CGG | 0.604942 | 8.4:+3212237 | None:intergenic |
| GCTGTAAAGTCAGGCTCAGG+GGG | 0.609315 | 8.4:+3212188 | None:intergenic |
| TCAGAAGGAAGTCACGGCAA+CGG | 0.612473 | 8.4:-3212329 | MS.gene57768:CDS |
| AAAATTCCATAATCAAAAGG+TGG | 0.620323 | 8.4:+3214864 | None:intergenic |
| TGTGAGAACCAGCACACGGA+AGG | 0.621184 | 8.4:-3214954 | MS.gene57768:CDS |
| AGCTTAGAGAGCGTGTGAGG+CGG | 0.621829 | 8.4:-3213484 | MS.gene57768:CDS |
| CAGCCTCCTTTAGATATGTG+CGG | 0.623629 | 8.4:+3212651 | None:intergenic |
| TGCTGTAAAGTCAGGCTCAG+GGG | 0.626056 | 8.4:+3212187 | None:intergenic |
| GAAGAAGCGGATGAGTCAGA+AGG | 0.626874 | 8.4:-3212344 | MS.gene57768:CDS |
| AACCTCTACTCGGACTGTGA+AGG | 0.629479 | 8.4:-3212567 | MS.gene57768:CDS |
| CTCTCAACAATGGAGAACCT+GGG | 0.633749 | 8.4:-3212435 | MS.gene57768:CDS |
| CAACCGCACATATCTAAAGG+AGG | 0.635378 | 8.4:-3212654 | MS.gene57768:CDS |
| GCTTCGTCAGAAGGAAGAAG+CGG | 0.637094 | 8.4:-3212357 | MS.gene57768:CDS |
| TTTGCCGCGCGCACTCTCCG+TGG | 0.637809 | 8.4:-3212266 | MS.gene57768:CDS |
| AAAGGCGTGATTCAGAACAA+TGG | 0.640001 | 8.4:-3213532 | MS.gene57768:CDS |
| TGAAATGATACCAGATGACA+AGG | 0.640327 | 8.4:+3214833 | None:intergenic |
| GATGAGTCAGAAGGAAGTCA+CGG | 0.642746 | 8.4:-3212335 | MS.gene57768:CDS |
| TCGACTCGCCAAGACTGCCA+GGG | 0.646113 | 8.4:-3212231 | MS.gene57768:CDS |
| TATAAGTGGTTGGCAACACG+TGG | 0.647524 | 8.4:-3213452 | MS.gene57768:CDS |
| TGCCAATCAGAAGCGCGAAG+AGG | 0.647772 | 8.4:+3214139 | None:intergenic |
| GGAGGCTGAGTTCTGTGGGG+AGG | 0.650785 | 8.4:-3212636 | MS.gene57768:CDS |
| AAACTTTGAGGCTAATAAGG+CGG | 0.650978 | 8.4:+3212286 | None:intergenic |
| TACACCACGGAGAGTGCGCG+CGG | 0.651777 | 8.4:+3212262 | None:intergenic |
| AACTAGCACATATCCTGGGG+AGG | 0.659235 | 8.4:-3214199 | MS.gene57768:CDS |
| TAAGGCGGCACCAAGGCTGG+AGG | 0.661658 | 8.4:+3212301 | None:intergenic |
| GACTGTGAAGGCGTTAACAG+AGG | 0.662573 | 8.4:-3212555 | MS.gene57768:CDS |
| AGGCTAATAAGGCGGCACCA+AGG | 0.669575 | 8.4:+3212294 | None:intergenic |
| AGAGTGTTACCACAGATGGT+GGG | 0.670648 | 8.4:-3212691 | MS.gene57768:CDS |
| GTCGATTGCGGTGTACACCA+CGG | 0.672348 | 8.4:+3212249 | None:intergenic |
| GTGTTACCACAGATGGTGGG+AGG | 0.679578 | 8.4:-3212688 | MS.gene57768:CDS |
| TCAAACTAGCACATATCCTG+GGG | 0.691393 | 8.4:-3214202 | MS.gene57768:CDS |
| GTATTGTGAGAACCAGCACA+CGG | 0.712309 | 8.4:-3214958 | MS.gene57768:CDS |
| GAAGATTAGAACCAGATCTG+GGG | 0.716370 | 8.4:+3212591 | None:intergenic |
| AAAGGAGGCTGAGTTCTGTG+GGG | 0.741818 | 8.4:-3212639 | MS.gene57768:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTAATTACCTTAAATTC+TGG | + | chr8.4:3212738-3212757 | None:intergenic | 15.0% |
| !! | ATATATTATAAATGTTACTG+AGG | - | chr8.4:3213874-3213893 | MS.gene57768:intron | 15.0% |
| !! | TAAGAAATATGATAAAATAG+AGG | - | chr8.4:3213453-3213472 | MS.gene57768:CDS | 15.0% |
| !! | TTAAAAATTCCATAATCAAA+AGG | + | chr8.4:3212640-3212659 | None:intergenic | 15.0% |
| !!! | AATTCATTAACTTATTTTCA+TGG | - | chr8.4:3214631-3214650 | MS.gene57768:intron | 15.0% |
| !!! | TTTTCTACTGTAAAAATATT+TGG | + | chr8.4:3214253-3214272 | None:intergenic | 15.0% |
| !! | AAAAATATTTGGTCCTTTAT+CGG | + | chr8.4:3214242-3214261 | None:intergenic | 20.0% |
| !! | AAATATAGCAATTGTGAATA+TGG | + | chr8.4:3213518-3213537 | None:intergenic | 20.0% |
| !! | ACAAATAATCAATGAAATCA+CGG | + | chr8.4:3213224-3213243 | None:intergenic | 20.0% |
| !! | CAAAATATCTTTACTGTTTA+TGG | - | chr8.4:3212704-3212723 | MS.gene57768:CDS | 20.0% |
| !! | TAGAGATATCATGTATAAAT+AGG | + | chr8.4:3213568-3213587 | None:intergenic | 20.0% |
| !! | TATTTAATAGACCATATCAA+TGG | - | chr8.4:3212992-3213011 | MS.gene57768:intron | 20.0% |
| !!! | ATATTTAAGTTTCTGTGTTA+TGG | - | chr8.4:3213730-3213749 | MS.gene57768:intron | 20.0% |
| !!! | ATATTTTGTGATGAATTTCT+TGG | + | chr8.4:3212692-3212711 | None:intergenic | 20.0% |
| !!! | TTTGCTTTTCAAATTCTTTT+TGG | - | chr8.4:3214443-3214462 | MS.gene57768:intron | 20.0% |
| ! | AAAAAAAACACTTACATGAC+TGG | + | chr8.4:3212272-3212291 | None:intergenic | 25.0% |
| ! | AAAATTCCATAATCAAAAGG+TGG | + | chr8.4:3212637-3212656 | None:intergenic | 25.0% |
| ! | AAACCTAACTTCAGAAATTA+AGG | + | chr8.4:3212854-3212873 | None:intergenic | 25.0% |
| ! | AAAGACCTAAAATACATTAG+TGG | + | chr8.4:3212403-3212422 | None:intergenic | 25.0% |
| ! | AAGTAAATGAAAATAGGTTG+TGG | + | chr8.4:3213250-3213269 | None:intergenic | 25.0% |
| ! | AATATCTTTACTGTTTATGG+TGG | - | chr8.4:3212707-3212726 | MS.gene57768:CDS | 25.0% |
| ! | AGAGAATACTTATATTGTTC+GGG | - | chr8.4:3214736-3214755 | MS.gene57768:intron | 25.0% |
| ! | ATATCTTTACTGTTTATGGT+GGG | - | chr8.4:3212708-3212727 | MS.gene57768:CDS | 25.0% |
| ! | CAAATAATCAATGAAATCAC+GGG | + | chr8.4:3213223-3213242 | None:intergenic | 25.0% |
| ! | CAGAGAATACTTATATTGTT+CGG | - | chr8.4:3214735-3214754 | MS.gene57768:intron | 25.0% |
| ! | GAAAATCAATCAGTGAAATA+AGG | + | chr8.4:3214535-3214554 | None:intergenic | 25.0% |
| ! | GAAATATGATAAAATAGAGG+AGG | - | chr8.4:3213456-3213475 | MS.gene57768:CDS | 25.0% |
| ! | GTATAAATAGGAGAATATGA+TGG | + | chr8.4:3213556-3213575 | None:intergenic | 25.0% |
| ! | GTATTCTCTGTAAATAAACA+TGG | + | chr8.4:3214725-3214744 | None:intergenic | 25.0% |
| ! | TATACAACTCAAATAGAACA+AGG | + | chr8.4:3212322-3212341 | None:intergenic | 25.0% |
| ! | TATCTCAGAACTTCTTATAA+AGG | - | chr8.4:3213021-3213040 | MS.gene57768:intron | 25.0% |
| ! | TATCTGCAAATAATCAGTAA+TGG | + | chr8.4:3212428-3212447 | None:intergenic | 25.0% |
| !! | AGTTTCTATGTCTAAAATAC+TGG | - | chr8.4:3212917-3212936 | MS.gene57768:intron | 25.0% |
| !! | ATATAGTGTTTGAGATTTGT+TGG | - | chr8.4:3214361-3214380 | MS.gene57768:intron | 25.0% |
| !!! | ACTTATTTTCATGGATTTGT+AGG | - | chr8.4:3214640-3214659 | MS.gene57768:intron | 25.0% |
| !!! | AGTTAAGGTCATTGATTTTA+TGG | - | chr8.4:3212894-3212913 | MS.gene57768:intron | 25.0% |
| !!! | TATTTTTATACTCATGCAGA+AGG | + | chr8.4:3214344-3214363 | None:intergenic | 25.0% |
| AATACTTATATTGTTCGGGA+AGG | - | chr8.4:3214740-3214759 | MS.gene57768:intron | 30.0% | |
| AATAGACCATATCAATGGTA+GGG | - | chr8.4:3212997-3213016 | MS.gene57768:intron | 30.0% | |
| AATGACCTTAACTCAATTGA+AGG | + | chr8.4:3212887-3212906 | None:intergenic | 30.0% | |
| ACGTATCGTAAAAGTAAGAA+TGG | - | chr8.4:3213414-3213433 | MS.gene57768:CDS | 30.0% | |
| ACTGATTATTTGCAGATAGT+TGG | - | chr8.4:3212430-3212449 | MS.gene57768:CDS | 30.0% | |
| ATGGTATTCTCTATTGTGAA+GGG | + | chr8.4:3213499-3213518 | None:intergenic | 30.0% | |
| ATTGTTAGGATGAGATAAGA+GGG | + | chr8.4:3213665-3213684 | None:intergenic | 30.0% | |
| CTTATCCTTCAATTGAGTTA+AGG | - | chr8.4:3212879-3212898 | MS.gene57768:intron | 30.0% | |
| CTTCATAGTTGAGAACTATA+TGG | - | chr8.4:3213758-3213777 | MS.gene57768:intron | 30.0% | |
| GATTAAGTTAATCTACCAGA+GGG | + | chr8.4:3214582-3214601 | None:intergenic | 30.0% | |
| GCAGTGAAGTAAATGAAAAT+AGG | + | chr8.4:3213256-3213275 | None:intergenic | 30.0% | |
| GTATGATCAATATAAGTGGT+TGG | - | chr8.4:3214036-3214055 | MS.gene57768:intron | 30.0% | |
| GTGCTCATGTAAATAACATT+TGG | + | chr8.4:3213791-3213810 | None:intergenic | 30.0% | |
| TAATAGACCATATCAATGGT+AGG | - | chr8.4:3212996-3213015 | MS.gene57768:intron | 30.0% | |
| TATCTTTACTGTTTATGGTG+GGG | - | chr8.4:3212709-3212728 | MS.gene57768:CDS | 30.0% | |
| TATGGTATTCTCTATTGTGA+AGG | + | chr8.4:3213500-3213519 | None:intergenic | 30.0% | |
| TGAAGATATGTCTGCAATAA+CGG | + | chr8.4:3213911-3213930 | None:intergenic | 30.0% | |
| TGAGAATATGAGTATGTGTT+AGG | + | chr8.4:3213706-3213725 | None:intergenic | 30.0% | |
| TGATTAAGTTAATCTACCAG+AGG | + | chr8.4:3214583-3214602 | None:intergenic | 30.0% | |
| TTTGTTAGGATATGGGATAA+GGG | + | chr8.4:3213639-3213658 | None:intergenic | 30.0% | |
| !! | CTCTTAAGTTCTGAAGTTAA+TGG | + | chr8.4:3212181-3212200 | None:intergenic | 30.0% |
| !! | GAACCTTAATTTCTGAAGTT+AGG | - | chr8.4:3212848-3212867 | MS.gene57768:intron | 30.0% |
| !! | TGAGTTGATGAAATAGTTCA+TGG | + | chr8.4:3214419-3214438 | None:intergenic | 30.0% |
| !! | TTCGTTTTTACTCTCAACAA+TGG | - | chr8.4:3215053-3215072 | MS.gene57768:CDS | 30.0% |
| !!! | ACTTGACTTTTTTCCGATAA+AGG | - | chr8.4:3214226-3214245 | MS.gene57768:intron | 30.0% |
| AAATTCGAAATTGATCCCTC+TGG | - | chr8.4:3214564-3214583 | MS.gene57768:intron | 35.0% | |
| AACTCCAAAAAGTCACATAG+AGG | + | chr8.4:3214486-3214505 | None:intergenic | 35.0% | |
| AAGTCCAATACACTCTTATC+TGG | + | chr8.4:3212781-3212800 | None:intergenic | 35.0% | |
| AATTATGAAGCTTCGTCAGA+AGG | - | chr8.4:3215132-3215151 | MS.gene57768:intron | 35.0% | |
| AGATAACCCTACCATTGATA+TGG | + | chr8.4:3213006-3213025 | None:intergenic | 35.0% | |
| AGGATAACGAGGAGTTAAAT+AGG | + | chr8.4:3213600-3213619 | None:intergenic | 35.0% | |
| AGTAACAACATAGGATAACG+AGG | + | chr8.4:3213611-3213630 | None:intergenic | 35.0% | |
| ATAATCAATGAAATCACGGG+AGG | + | chr8.4:3213220-3213239 | None:intergenic | 35.0% | |
| ATATCTCTTCGAAGATCCTT+TGG | + | chr8.4:3214103-3214122 | None:intergenic | 35.0% | |
| ATCTTTACTGTTTATGGTGG+GGG | - | chr8.4:3212710-3212729 | MS.gene57768:CDS | 35.0% | |
| ATTCCATAATCAAAAGGTGG+AGG | + | chr8.4:3212634-3212653 | None:intergenic | 35.0% | |
| CAAATAGAACAAGGAAGCAA+AGG | + | chr8.4:3212313-3212332 | None:intergenic | 35.0% | |
| GATTGTTAGGATGAGATAAG+AGG | + | chr8.4:3213666-3213685 | None:intergenic | 35.0% | |
| GGATAACGAGGAGTTAAATA+GGG | + | chr8.4:3213599-3213618 | None:intergenic | 35.0% | |
| TAATCAATGAAATCACGGGA+GGG | + | chr8.4:3213219-3213238 | None:intergenic | 35.0% | |
| TACAGAGCAAAGTAATGAGT+GGG | + | chr8.4:3212824-3212843 | None:intergenic | 35.0% | |
| TATTAAGCGTCATCTCTGTT+TGG | - | chr8.4:3214120-3214139 | MS.gene57768:intron | 35.0% | |
| TCATCCATACTCTCAAATAG+TGG | + | chr8.4:3214668-3214687 | None:intergenic | 35.0% | |
| TCTCTTACGTGTGACTAAAA+AGG | - | chr8.4:3214203-3214222 | MS.gene57768:CDS | 35.0% | |
| TGAAACAAGCCAAAAAATGC+AGG | + | chr8.4:3213062-3213081 | None:intergenic | 35.0% | |
| TGAAATGATACCAGATGACA+AGG | + | chr8.4:3212668-3212687 | None:intergenic | 35.0% | |
| TGGTATTCTCTATTGTGAAG+GGG | + | chr8.4:3213498-3213517 | None:intergenic | 35.0% | |
| TTACAGAGCAAAGTAATGAG+TGG | + | chr8.4:3212825-3212844 | None:intergenic | 35.0% | |
| TTCAAACTAGCACATATCCT+GGG | - | chr8.4:3213295-3213314 | MS.gene57768:intron | 35.0% | |
| TTGTTAGGATATGGGATAAG+GGG | + | chr8.4:3213638-3213657 | None:intergenic | 35.0% | |
| TTTCAACCGCACATATCTAA+AGG | - | chr8.4:3214841-3214860 | MS.gene57768:CDS | 35.0% | |
| ! | AGATAAGAGGGAAGTTTGTT+AGG | + | chr8.4:3213653-3213672 | None:intergenic | 35.0% |
| ! | CTCTGCCACTAATGTATTTT+AGG | - | chr8.4:3212395-3212414 | MS.gene57768:CDS | 35.0% |
| ! | GTTTGTTAGGATATGGGATA+AGG | + | chr8.4:3213640-3213659 | None:intergenic | 35.0% |
| ! | TCTCTCTTAGATTAGTTACC+TGG | - | chr8.4:3214392-3214411 | MS.gene57768:intron | 35.0% |
| ! | TTGTCCAGATAAGAGTGTAT+TGG | - | chr8.4:3212774-3212793 | MS.gene57768:CDS | 35.0% |
| ! | TTTAGTTCAGAGTCTACCAA+AGG | - | chr8.4:3214084-3214103 | MS.gene57768:intron | 35.0% |
| !! | AAACTTTGAGGCTAATAAGG+CGG | + | chr8.4:3215215-3215234 | None:intergenic | 35.0% |
| !! | AGGGAAGTTTGTTAGGATAT+GGG | + | chr8.4:3213646-3213665 | None:intergenic | 35.0% |
| !! | ATGAAAAGCATCTCATCAAC+TGG | + | chr8.4:3214770-3214789 | None:intergenic | 35.0% |
| !!! | CTTGTTTTATTCAAGCAGCA+TGG | - | chr8.4:3215089-3215108 | MS.gene57768:intron | 35.0% |
| !!! | GTTCTAAAGCCTGCATTTTT+TGG | - | chr8.4:3213050-3213069 | MS.gene57768:intron | 35.0% |
| !!! | TTTTGGCTTGTTTCACGTTT+TGG | - | chr8.4:3213067-3213086 | MS.gene57768:intron | 35.0% |
| AACAAATTTCAGCTCATCGG+CGG | + | chr8.4:3214987-3215006 | None:intergenic | 40.0% | |
| AAGACAGTGAGGAGATTGTT+AGG | + | chr8.4:3213679-3213698 | None:intergenic | 40.0% | |
| AATAGAGGAGGATCTCTCTA+AGG | - | chr8.4:3213468-3213487 | MS.gene57768:CDS | 40.0% | |
| AATCAATGAAATCACGGGAG+GGG | + | chr8.4:3213218-3213237 | None:intergenic | 40.0% | |
| ACAGAGCAAAGTAATGAGTG+GGG | + | chr8.4:3212823-3212842 | None:intergenic | 40.0% | |
| ACTGCACAACAACATCAATG+TGG | + | chr8.4:3214296-3214315 | None:intergenic | 40.0% | |
| AGAGCAAAGCGCATATTGTA+GGG | + | chr8.4:3213178-3213197 | None:intergenic | 40.0% | |
| AGGGGAGTTAGTAACAACAT+AGG | + | chr8.4:3213620-3213639 | None:intergenic | 40.0% | |
| AGTTGAGAACTATATGGCTG+TGG | - | chr8.4:3213764-3213783 | MS.gene57768:intron | 40.0% | |
| ATAGAGGAGGATCTCTCTAA+GGG | - | chr8.4:3213469-3213488 | MS.gene57768:CDS | 40.0% | |
| ATTGAAAAGATAACCTCCCC+AGG | + | chr8.4:3213315-3213334 | None:intergenic | 40.0% | |
| CTAATCTTCCAACCTCTACT+CGG | - | chr8.4:3214921-3214940 | MS.gene57768:CDS | 40.0% | |
| CTTCAAACTAGCACATATCC+TGG | - | chr8.4:3213294-3213313 | MS.gene57768:intron | 40.0% | |
| GAAGATTAGAACCAGATCTG+GGG | + | chr8.4:3214910-3214929 | None:intergenic | 40.0% | |
| GAGGAGTTAAATAGGGATGT+TGG | + | chr8.4:3213592-3213611 | None:intergenic | 40.0% | |
| GATGAAATAGTTCATGGACC+AGG | + | chr8.4:3214413-3214432 | None:intergenic | 40.0% | |
| GGAAGATTAGAACCAGATCT+GGG | + | chr8.4:3214911-3214930 | None:intergenic | 40.0% | |
| GGCAACAAATTTCAGCTCAT+CGG | + | chr8.4:3214990-3215009 | None:intergenic | 40.0% | |
| GGCGGTATGATCAATATAAG+TGG | - | chr8.4:3214032-3214051 | MS.gene57768:intron | 40.0% | |
| GGTTCCACTATTTGAGAGTA+TGG | - | chr8.4:3214661-3214680 | MS.gene57768:intron | 40.0% | |
| TCAAACTAGCACATATCCTG+GGG | - | chr8.4:3213296-3213315 | MS.gene57768:intron | 40.0% | |
| TCAATAGCACTTGCCATATC+AGG | - | chr8.4:3213330-3213349 | MS.gene57768:intron | 40.0% | |
| TCAGAACTTAAGAGAACAGC+TGG | - | chr8.4:3212187-3212206 | MS.gene57768:CDS | 40.0% | |
| TGGAAGATTAGAACCAGATC+TGG | + | chr8.4:3214912-3214931 | None:intergenic | 40.0% | |
| TGGAGGAAATGAGAGTCAAA+AGG | - | chr8.4:3213948-3213967 | MS.gene57768:intron | 40.0% | |
| TGGTTTCAGTCTCTCACATA+TGG | + | chr8.4:3214705-3214724 | None:intergenic | 40.0% | |
| TGTTAGGACATAAGACAGTG+AGG | + | chr8.4:3213690-3213709 | None:intergenic | 40.0% | |
| TTACGATACGTCAAGCTCAA+TGG | + | chr8.4:3213405-3213424 | None:intergenic | 40.0% | |
| TTGAATAAAACAAGCAGCCC+AGG | + | chr8.4:3215083-3215102 | None:intergenic | 40.0% | |
| TTGTAATTTCACCAACTCCC+TGG | + | chr8.4:3215287-3215306 | None:intergenic | 40.0% | |
| ! | AAAGGCGTGATTCAGAACAA+TGG | - | chr8.4:3213966-3213985 | MS.gene57768:intron | 40.0% |
| ! | AGATGCTTTTCATCATACGC+GGG | - | chr8.4:3214777-3214796 | MS.gene57768:CDS | 40.0% |
| ! | AGTGCCTCTATGTGACTTTT+TGG | - | chr8.4:3214479-3214498 | MS.gene57768:intron | 40.0% |
| ! | AGTGTATTGGACTTCCCTTT+TGG | - | chr8.4:3212787-3212806 | MS.gene57768:CDS | 40.0% |
| ! | GAGATGCTTTTCATCATACG+CGG | - | chr8.4:3214776-3214795 | MS.gene57768:CDS | 40.0% |
| ! | TTTAAGCAAGCCTTGTCATC+TGG | - | chr8.4:3212655-3212674 | MS.gene57768:CDS | 40.0% |
| ! | TTTTGTTGCACCCATTGTCA+CGG | + | chr8.4:3212513-3212532 | None:intergenic | 40.0% |
| !! | ATCTCTGTTTGGCTTTAGTG+AGG | - | chr8.4:3214131-3214150 | MS.gene57768:CDS | 40.0% |
| !! | GAGGGAAGTTTGTTAGGATA+TGG | + | chr8.4:3213647-3213666 | None:intergenic | 40.0% |
| !! | GATCCTCCACCTTTTGATTA+TGG | - | chr8.4:3212628-3212647 | MS.gene57768:CDS | 40.0% |
| !! | GGCAAACTTTGAGGCTAATA+AGG | + | chr8.4:3215218-3215237 | None:intergenic | 40.0% |
| !! | TGCAGATAGTTGGTGCTTTT+TGG | - | chr8.4:3212440-3212459 | MS.gene57768:CDS | 40.0% |
| !!! | ACACGTAAGAGAGAGTGTTT+TGG | + | chr8.4:3214195-3214214 | None:intergenic | 40.0% |
| !!! | AGCTTTGCTTTTGTTTTGCC+AGG | + | chr8.4:3212578-3212597 | None:intergenic | 40.0% |
| AAGCGCATATTGTAGGGATC+TGG | + | chr8.4:3213172-3213191 | None:intergenic | 45.0% | |
| ACTCTCAACAATGGAGAACC+TGG | - | chr8.4:3215062-3215081 | MS.gene57768:intron | 45.0% | |
| AGAATGCTTGCCGTGACAAT+GGG | - | chr8.4:3212500-3212519 | MS.gene57768:CDS | 45.0% | |
| ATCAATGAAATCACGGGAGG+GGG | + | chr8.4:3213217-3213236 | None:intergenic | 45.0% | |
| ATCTTCAGTCCCTTACCCTT+AGG | - | chr8.4:3213924-3213943 | MS.gene57768:intron | 45.0% | |
| CAACCGCACATATCTAAAGG+AGG | - | chr8.4:3214844-3214863 | MS.gene57768:CDS | 45.0% | |
| CAGCCTCCTTTAGATATGTG+CGG | + | chr8.4:3214850-3214869 | None:intergenic | 45.0% | |
| CTCTCAACAATGGAGAACCT+GGG | - | chr8.4:3215063-3215082 | MS.gene57768:intron | 45.0% | |
| GAAGAGGATGAGACCTGATA+TGG | + | chr8.4:3213346-3213365 | None:intergenic | 45.0% | |
| GAGAGCAAAGCGCATATTGT+AGG | + | chr8.4:3213179-3213198 | None:intergenic | 45.0% | |
| GATGAGTCAGAAGGAAGTCA+CGG | - | chr8.4:3215163-3215182 | MS.gene57768:intron | 45.0% | |
| GCATCATCTGCTGTAAAGTC+AGG | + | chr8.4:3215322-3215341 | None:intergenic | 45.0% | |
| GGGGTGATTATGCACCAAAA+GGG | + | chr8.4:3212804-3212823 | None:intergenic | 45.0% | |
| GTATTGTGAGAACCAGCACA+CGG | - | chr8.4:3212540-3212559 | MS.gene57768:CDS | 45.0% | |
| GTGAAGACGTCTAAACTGAC+TGG | + | chr8.4:3215011-3215030 | None:intergenic | 45.0% | |
| TAAAGGAGGCTGAGTTCTGT+GGG | - | chr8.4:3214858-3214877 | MS.gene57768:CDS | 45.0% | |
| TAGACGTCTTCACAGTAGAC+AGG | - | chr8.4:3215018-3215037 | MS.gene57768:CDS | 45.0% | |
| TATAAGTGGTTGGCAACACG+TGG | - | chr8.4:3214046-3214065 | MS.gene57768:intron | 45.0% | |
| TCTCATTTCCTCCAGCCTAA+GGG | + | chr8.4:3213942-3213961 | None:intergenic | 45.0% | |
| TGGGGTGATTATGCACCAAA+AGG | + | chr8.4:3212805-3212824 | None:intergenic | 45.0% | |
| TGTCTTTGCCGAAACTGCAT+GGG | - | chr8.4:3212210-3212229 | MS.gene57768:CDS | 45.0% | |
| TTACTTCACTGCAGTACCCT+TGG | - | chr8.4:3213264-3213283 | MS.gene57768:intron | 45.0% | |
| TTGAACGCAATGACTCATGC+TGG | - | chr8.4:3212476-3212495 | MS.gene57768:CDS | 45.0% | |
| ! | ACACGCTCTCTAAGCTCTTT+TGG | + | chr8.4:3214010-3214029 | None:intergenic | 45.0% |
| ! | AGAGTGTTACCACAGATGGT+GGG | - | chr8.4:3214807-3214826 | MS.gene57768:CDS | 45.0% |
| ! | CACGCTCTCTAAGCTCTTTT+GGG | + | chr8.4:3214009-3214028 | None:intergenic | 45.0% |
| ! | TGGGGAGGAGCTTTTAACAT+GGG | - | chr8.4:3214877-3214896 | MS.gene57768:CDS | 45.0% |
| !! | CTGTTTGGCTTTAGTGAGGA+GGG | - | chr8.4:3214135-3214154 | MS.gene57768:CDS | 45.0% |
| !! | CTTGAGAGTGTTACCACAGA+TGG | - | chr8.4:3214803-3214822 | MS.gene57768:CDS | 45.0% |
| !! | TCTGTTTGGCTTTAGTGAGG+AGG | - | chr8.4:3214134-3214153 | MS.gene57768:CDS | 45.0% |
| AAAGGAGGCTGAGTTCTGTG+GGG | - | chr8.4:3214859-3214878 | MS.gene57768:CDS | 50.0% | |
| AACCTCTACTCGGACTGTGA+AGG | - | chr8.4:3214931-3214950 | MS.gene57768:CDS | 50.0% | |
| AACTAGCACATATCCTGGGG+AGG | - | chr8.4:3213299-3213318 | MS.gene57768:intron | 50.0% | |
| ACACGGAAGGTTATAGTGCC+TGG | - | chr8.4:3212557-3212576 | MS.gene57768:CDS | 50.0% | |
| ATCCTCTTCGCGCTTCTGAT+TGG | - | chr8.4:3213357-3213376 | MS.gene57768:intron | 50.0% | |
| CACTATAACCTTCCGTGTGC+TGG | + | chr8.4:3212555-3212574 | None:intergenic | 50.0% | |
| CAGAATGCTTGCCGTGACAA+TGG | - | chr8.4:3212499-3212518 | MS.gene57768:CDS | 50.0% | |
| CTAAAGGAGGCTGAGTTCTG+TGG | - | chr8.4:3214857-3214876 | MS.gene57768:CDS | 50.0% | |
| CTCTCATTTCCTCCAGCCTA+AGG | + | chr8.4:3213943-3213962 | None:intergenic | 50.0% | |
| CTGCTGTAAAGTCAGGCTCA+GGG | + | chr8.4:3215315-3215334 | None:intergenic | 50.0% | |
| GAAGAAGCGGATGAGTCAGA+AGG | - | chr8.4:3215154-3215173 | MS.gene57768:intron | 50.0% | |
| GCTTCGTCAGAAGGAAGAAG+CGG | - | chr8.4:3215141-3215160 | MS.gene57768:intron | 50.0% | |
| GCTTCTGATTGGCAACATGC+AGG | - | chr8.4:3213368-3213387 | MS.gene57768:CDS | 50.0% | |
| GTGTCTTTGCCGAAACTGCA+TGG | - | chr8.4:3212209-3212228 | MS.gene57768:CDS | 50.0% | |
| TCAATGAAATCACGGGAGGG+GGG | + | chr8.4:3213216-3213235 | None:intergenic | 50.0% | |
| TCAGAAGGAAGTCACGGCAA+CGG | - | chr8.4:3215169-3215188 | MS.gene57768:intron | 50.0% | |
| TCTGCTGTAAAGTCAGGCTC+AGG | + | chr8.4:3215316-3215335 | None:intergenic | 50.0% | |
| TGCTGTAAAGTCAGGCTCAG+GGG | + | chr8.4:3215314-3215333 | None:intergenic | 50.0% | |
| TTCACAGTCCGAGTAGAGGT+TGG | + | chr8.4:3214932-3214951 | None:intergenic | 50.0% | |
| TTCCTCCAGCCTAAGGGTAA+GGG | + | chr8.4:3213936-3213955 | None:intergenic | 50.0% | |
| TTTCAGCTCATCGGCGGTTA+AGG | + | chr8.4:3214981-3215000 | None:intergenic | 50.0% | |
| TTTCCTCCAGCCTAAGGGTA+AGG | + | chr8.4:3213937-3213956 | None:intergenic | 50.0% | |
| ! | AAGAGCTTAGAGAGCGTGTG+AGG | - | chr8.4:3214011-3214030 | MS.gene57768:intron | 50.0% |
| ! | AGTTTGAAGCCCCTGACCAA+GGG | + | chr8.4:3213283-3213302 | None:intergenic | 50.0% |
| ! | GTGGGGAGGAGCTTTTAACA+TGG | - | chr8.4:3214876-3214895 | MS.gene57768:CDS | 50.0% |
| ! | TAGTTTGAAGCCCCTGACCA+AGG | + | chr8.4:3213284-3213303 | None:intergenic | 50.0% |
| !! | GACTGTGAAGGCGTTAACAG+AGG | - | chr8.4:3214943-3214962 | MS.gene57768:CDS | 50.0% |
| !! | GAGAGTGTTACCACAGATGG+TGG | - | chr8.4:3214806-3214825 | MS.gene57768:CDS | 50.0% |
| ACTGCAGTACCCTTGGTCAG+GGG | - | chr8.4:3213271-3213290 | MS.gene57768:intron | 55.0% | |
| AGGCTAATAAGGCGGCACCA+AGG | + | chr8.4:3215207-3215226 | None:intergenic | 55.0% | |
| CACTGCAGTACCCTTGGTCA+GGG | - | chr8.4:3213270-3213289 | MS.gene57768:intron | 55.0% | |
| CAGTCTTGGCGAGTCGATTG+CGG | + | chr8.4:3215264-3215283 | None:intergenic | 55.0% | |
| CTTTGCCGAAACTGCATGGG+CGG | - | chr8.4:3212213-3212232 | MS.gene57768:CDS | 55.0% | |
| GCTGTAAAGTCAGGCTCAGG+GGG | + | chr8.4:3215313-3215332 | None:intergenic | 55.0% | |
| GGTGGGGGCTCCAGAATTTA+AGG | - | chr8.4:3212725-3212744 | MS.gene57768:CDS | 55.0% | |
| GTCGATTGCGGTGTACACCA+CGG | + | chr8.4:3215252-3215271 | None:intergenic | 55.0% | |
| TAATAAGGCGGCACCAAGGC+TGG | + | chr8.4:3215203-3215222 | None:intergenic | 55.0% | |
| TCACTGCAGTACCCTTGGTC+AGG | - | chr8.4:3213269-3213288 | MS.gene57768:intron | 55.0% | |
| TCAGTCCCTTACCCTTAGGC+TGG | - | chr8.4:3213928-3213947 | MS.gene57768:intron | 55.0% | |
| TGTGAGAACCAGCACACGGA+AGG | - | chr8.4:3212544-3212563 | MS.gene57768:CDS | 55.0% | |
| TTTGCCGAAACTGCATGGGC+GGG | - | chr8.4:3212214-3212233 | MS.gene57768:CDS | 55.0% | |
| ! | AGAACCAGATCTGGGGTCCA+GGG | + | chr8.4:3214903-3214922 | None:intergenic | 55.0% |
| ! | AGCTTAGAGAGCGTGTGAGG+CGG | - | chr8.4:3214014-3214033 | MS.gene57768:intron | 55.0% |
| ! | GGAGCTTTTAACATGGGCCC+TGG | - | chr8.4:3214883-3214902 | MS.gene57768:CDS | 55.0% |
| ! | TAGAACCAGATCTGGGGTCC+AGG | + | chr8.4:3214904-3214923 | None:intergenic | 55.0% |
| ! | TGCCAATCAGAAGCGCGAAG+AGG | + | chr8.4:3213362-3213381 | None:intergenic | 55.0% |
| !! | GTGTTACCACAGATGGTGGG+AGG | - | chr8.4:3214810-3214829 | MS.gene57768:CDS | 55.0% |
| AACGGCAGTTCCTCCAGCCT+TGG | - | chr8.4:3215187-3215206 | MS.gene57768:intron | 60.0% | |
| ACCACTCCTCCCACCATCTG+TGG | + | chr8.4:3214819-3214838 | None:intergenic | 60.0% | |
| AGCACCCGCCCATGCAGTTT+CGG | + | chr8.4:3212221-3212240 | None:intergenic | 60.0% | |
| AGTGCGCGCGGCAAACTTTG+AGG | + | chr8.4:3215227-3215246 | None:intergenic | 60.0% | |
| CACCAACTCCCTGGCAGTCT+TGG | + | chr8.4:3215278-3215297 | None:intergenic | 60.0% | |
| CGCCTTCACAGTCCGAGTAG+AGG | + | chr8.4:3214936-3214955 | None:intergenic | 60.0% | |
| GTCCCTTACCCTTAGGCTGG+AGG | - | chr8.4:3213931-3213950 | MS.gene57768:intron | 60.0% | |
| ! | TCGACTCGCCAAGACTGCCA+GGG | - | chr8.4:3215267-3215286 | MS.gene57768:CDS | 60.0% |
| !! | ACCACAGATGGTGGGAGGAG+TGG | - | chr8.4:3214815-3214834 | MS.gene57768:CDS | 60.0% |
| !! | ATCGACTCGCCAAGACTGCC+AGG | - | chr8.4:3215266-3215285 | MS.gene57768:CDS | 60.0% |
| CGCCAAGACTGCCAGGGAGT+TGG | - | chr8.4:3215273-3215292 | MS.gene57768:CDS | 65.0% | |
| GGAGGCTGAGTTCTGTGGGG+AGG | - | chr8.4:3214862-3214881 | MS.gene57768:CDS | 65.0% | |
| TAAGGCGGCACCAAGGCTGG+AGG | + | chr8.4:3215200-3215219 | None:intergenic | 65.0% | |
| ! | TACACCACGGAGAGTGCGCG+CGG | + | chr8.4:3215239-3215258 | None:intergenic | 65.0% |
| TGGGCCCTGGACCCCAGATC+TGG | - | chr8.4:3214896-3214915 | MS.gene57768:CDS | 70.0% | |
| TTTGCCGCGCGCACTCTCCG+TGG | - | chr8.4:3215232-3215251 | MS.gene57768:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 3212172 | 3215348 | 3212172 | ID=MS.gene57768 |
| chr8.4 | mRNA | 3212172 | 3215348 | 3212172 | ID=MS.gene57768.t1;Parent=MS.gene57768 |
| chr8.4 | exon | 3215244 | 3215348 | 3215244 | ID=MS.gene57768.t1.exon1;Parent=MS.gene57768.t1 |
| chr8.4 | CDS | 3215244 | 3215348 | 3215244 | ID=cds.MS.gene57768.t1;Parent=MS.gene57768.t1 |
| chr8.4 | exon | 3214774 | 3215075 | 3214774 | ID=MS.gene57768.t1.exon2;Parent=MS.gene57768.t1 |
| chr8.4 | CDS | 3214774 | 3215075 | 3214774 | ID=cds.MS.gene57768.t1;Parent=MS.gene57768.t1 |
| chr8.4 | exon | 3214131 | 3214242 | 3214131 | ID=MS.gene57768.t1.exon3;Parent=MS.gene57768.t1 |
| chr8.4 | CDS | 3214131 | 3214242 | 3214131 | ID=cds.MS.gene57768.t1;Parent=MS.gene57768.t1 |
| chr8.4 | exon | 3213364 | 3213600 | 3213364 | ID=MS.gene57768.t1.exon4;Parent=MS.gene57768.t1 |
| chr8.4 | CDS | 3213364 | 3213600 | 3213364 | ID=cds.MS.gene57768.t1;Parent=MS.gene57768.t1 |
| chr8.4 | exon | 3212172 | 3212858 | 3212172 | ID=MS.gene57768.t1.exon5;Parent=MS.gene57768.t1 |
| chr8.4 | CDS | 3212172 | 3212858 | 3212172 | ID=cds.MS.gene57768.t1;Parent=MS.gene57768.t1 |
| Gene Sequence |
| Protein sequence |
