Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57812.t1 | XP_003620188.1 | 95.3 | 213 | 10 | 0 | 1 | 213 | 1 | 213 | 1.90E-117 | 431.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57812.t1 | P13087 | 44.6 | 213 | 101 | 5 | 5 | 209 | 11 | 214 | 8.9e-44 | 178.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57812.t1 | G7KKR0 | 95.3 | 213 | 10 | 0 | 1 | 213 | 1 | 213 | 1.3e-117 | 431.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049217 | MS.gene57812 | -0.808695 | 2.73E-50 | -1.69E-46 |
| MS.gene050380 | MS.gene57812 | 0.859633 | 3.61E-63 | -1.69E-46 |
| MS.gene050381 | MS.gene57812 | 0.804799 | 1.82E-49 | -1.69E-46 |
| MS.gene050593 | MS.gene57812 | -0.803596 | 3.23E-49 | -1.69E-46 |
| MS.gene050800 | MS.gene57812 | 0.825937 | 3.57E-54 | -1.69E-46 |
| MS.gene050926 | MS.gene57812 | 0.816303 | 5.93E-52 | -1.69E-46 |
| MS.gene05104 | MS.gene57812 | 0.806537 | 7.84E-50 | -1.69E-46 |
| MS.gene051387 | MS.gene57812 | -0.808884 | 2.49E-50 | -1.69E-46 |
| MS.gene051694 | MS.gene57812 | -0.829979 | 3.80E-55 | -1.69E-46 |
| MS.gene051858 | MS.gene57812 | -0.830996 | 2.14E-55 | -1.69E-46 |
| MS.gene05234 | MS.gene57812 | 0.88237 | 1.10E-70 | -1.69E-46 |
| MS.gene053421 | MS.gene57812 | 0.823898 | 1.08E-53 | -1.69E-46 |
| MS.gene054003 | MS.gene57812 | -0.811016 | 8.65E-51 | -1.69E-46 |
| MS.gene054290 | MS.gene57812 | 0.833737 | 4.49E-56 | -1.69E-46 |
| MS.gene054435 | MS.gene57812 | 0.824357 | 8.44E-54 | -1.69E-46 |
| MS.gene054437 | MS.gene57812 | 0.813746 | 2.19E-51 | -1.69E-46 |
| MS.gene054447 | MS.gene57812 | 0.815281 | 1.00E-51 | -1.69E-46 |
| MS.gene054486 | MS.gene57812 | -0.811142 | 8.12E-51 | -1.69E-46 |
| MS.gene055124 | MS.gene57812 | 0.800191 | 1.62E-48 | -1.69E-46 |
| MS.gene055202 | MS.gene57812 | 0.815327 | 9.78E-52 | -1.69E-46 |
| MS.gene055206 | MS.gene57812 | -0.800597 | 1.34E-48 | -1.69E-46 |
| MS.gene055486 | MS.gene57812 | -0.807017 | 6.21E-50 | -1.69E-46 |
| MS.gene055909 | MS.gene57812 | -0.805623 | 1.22E-49 | -1.69E-46 |
| MS.gene055911 | MS.gene57812 | -0.803922 | 2.77E-49 | -1.69E-46 |
| MS.gene055941 | MS.gene57812 | -0.802065 | 6.70E-49 | -1.69E-46 |
| MS.gene056448 | MS.gene57812 | -0.807008 | 6.23E-50 | -1.69E-46 |
| MS.gene056511 | MS.gene57812 | -0.812017 | 5.24E-51 | -1.69E-46 |
| MS.gene057146 | MS.gene57812 | -0.829637 | 4.61E-55 | -1.69E-46 |
| MS.gene058157 | MS.gene57812 | -0.804709 | 1.90E-49 | -1.69E-46 |
| MS.gene05883 | MS.gene57812 | -0.808296 | 3.32E-50 | -1.69E-46 |
| MS.gene059536 | MS.gene57812 | -0.807073 | 6.04E-50 | -1.69E-46 |
| MS.gene059902 | MS.gene57812 | -0.828423 | 9.06E-55 | -1.69E-46 |
| MS.gene060205 | MS.gene57812 | 0.803259 | 3.80E-49 | -1.69E-46 |
| MS.gene060482 | MS.gene57812 | -0.80895 | 2.41E-50 | -1.69E-46 |
| MS.gene060837 | MS.gene57812 | -0.825141 | 5.51E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57812.t1 | MTR_6g078290 | 95.305 | 213 | 10 | 0 | 1 | 213 | 1 | 213 | 3.71e-152 | 421 |
| MS.gene57812.t1 | MTR_6g078120 | 58.291 | 199 | 81 | 2 | 15 | 212 | 16 | 213 | 2.30e-75 | 226 |
| MS.gene57812.t1 | MTR_6g078140 | 58.794 | 199 | 80 | 2 | 15 | 212 | 16 | 213 | 5.16e-75 | 225 |
| MS.gene57812.t1 | MTR_6g078280 | 53.266 | 199 | 83 | 6 | 17 | 210 | 17 | 210 | 2.63e-63 | 196 |
| MS.gene57812.t1 | MTR_6g078250 | 49.289 | 211 | 95 | 5 | 1 | 209 | 1 | 201 | 1.99e-59 | 186 |
| MS.gene57812.t1 | MTR_7g037410 | 47.644 | 191 | 87 | 4 | 22 | 210 | 21 | 200 | 2.22e-54 | 172 |
| MS.gene57812.t1 | MTR_6g078260 | 42.424 | 198 | 96 | 5 | 15 | 210 | 16 | 197 | 8.49e-48 | 155 |
| MS.gene57812.t1 | MTR_6g078100 | 43.836 | 219 | 98 | 10 | 1 | 210 | 1 | 203 | 1.88e-47 | 155 |
| MS.gene57812.t1 | MTR_6g078070 | 42.326 | 215 | 105 | 8 | 1 | 210 | 1 | 201 | 1.43e-45 | 150 |
| MS.gene57812.t1 | MTR_3g106585 | 32.727 | 220 | 113 | 10 | 3 | 213 | 5 | 198 | 2.31e-21 | 88.2 |
| MS.gene57812.t1 | MTR_6g065460 | 33.333 | 213 | 126 | 7 | 1 | 209 | 1 | 201 | 3.37e-21 | 87.4 |
| MS.gene57812.t1 | MTR_3g014870 | 33.178 | 214 | 111 | 9 | 6 | 210 | 11 | 201 | 8.95e-21 | 86.3 |
| MS.gene57812.t1 | MTR_2g073010 | 31.707 | 205 | 109 | 8 | 1 | 200 | 8 | 186 | 2.03e-20 | 85.1 |
| MS.gene57812.t1 | MTR_0100s0150 | 33.333 | 207 | 116 | 8 | 11 | 210 | 8 | 199 | 3.06e-20 | 84.7 |
| MS.gene57812.t1 | MTR_3g014820 | 32.536 | 209 | 117 | 8 | 11 | 210 | 8 | 201 | 3.32e-20 | 84.7 |
| MS.gene57812.t1 | MTR_3g106620 | 28.636 | 220 | 124 | 8 | 3 | 213 | 5 | 200 | 2.46e-19 | 82.8 |
| MS.gene57812.t1 | MTR_0211s0080 | 32.212 | 208 | 114 | 9 | 11 | 210 | 8 | 196 | 3.82e-19 | 82.0 |
| MS.gene57812.t1 | MTR_8g059790 | 34.574 | 188 | 102 | 9 | 30 | 210 | 29 | 202 | 3.90e-18 | 79.3 |
| MS.gene57812.t1 | MTR_0302s0030 | 31.401 | 207 | 121 | 7 | 11 | 210 | 8 | 200 | 3.91e-18 | 79.3 |
| MS.gene57812.t1 | MTR_8g461050 | 30.435 | 207 | 123 | 7 | 11 | 210 | 8 | 200 | 3.95e-18 | 79.3 |
| MS.gene57812.t1 | MTR_0084s0030 | 31.884 | 207 | 120 | 8 | 11 | 210 | 8 | 200 | 9.97e-18 | 78.2 |
| MS.gene57812.t1 | MTR_8g060550 | 30.622 | 209 | 118 | 9 | 11 | 210 | 8 | 198 | 9.96e-16 | 72.8 |
| MS.gene57812.t1 | MTR_8g461690 | 30.622 | 209 | 118 | 9 | 11 | 210 | 8 | 198 | 9.96e-16 | 72.8 |
| MS.gene57812.t1 | MTR_7g108815 | 33.333 | 180 | 97 | 10 | 28 | 200 | 25 | 188 | 1.01e-14 | 70.1 |
| MS.gene57812.t1 | MTR_6g078040 | 49.351 | 77 | 35 | 3 | 103 | 177 | 1 | 75 | 1.15e-14 | 67.4 |
| MS.gene57812.t1 | MTR_6g059650 | 30.808 | 198 | 111 | 8 | 25 | 213 | 23 | 203 | 3.23e-14 | 68.9 |
| MS.gene57812.t1 | MTR_6g059410 | 31.019 | 216 | 117 | 9 | 1 | 209 | 1 | 191 | 2.39e-12 | 63.9 |
| MS.gene57812.t1 | MTR_2g072980 | 30.882 | 204 | 119 | 8 | 1 | 202 | 5 | 188 | 4.79e-12 | 62.8 |
| MS.gene57812.t1 | MTR_6g017225 | 28.283 | 198 | 121 | 7 | 5 | 200 | 11 | 189 | 8.80e-12 | 63.5 |
| MS.gene57812.t1 | MTR_6g059760 | 32.212 | 208 | 113 | 12 | 10 | 209 | 12 | 199 | 3.85e-11 | 60.5 |
| MS.gene57812.t1 | MTR_6g009650 | 28.365 | 208 | 127 | 6 | 5 | 209 | 11 | 199 | 7.23e-11 | 59.7 |
| MS.gene57812.t1 | MTR_6g009563 | 27.619 | 210 | 134 | 6 | 3 | 209 | 6 | 200 | 8.63e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57812.t1 | AT1G17860 | 45.933 | 209 | 91 | 7 | 4 | 210 | 5 | 193 | 4.39e-50 | 161 |
| MS.gene57812.t1 | AT1G73260 | 35.407 | 209 | 116 | 9 | 8 | 212 | 12 | 205 | 4.69e-24 | 95.5 |
| MS.gene57812.t1 | AT1G73325 | 32.558 | 215 | 119 | 11 | 5 | 212 | 8 | 203 | 1.29e-17 | 78.6 |
Find 74 sgRNAs with CRISPR-Local
Find 78 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCCTAATAACACCTTTCTT+AGG | 0.178129 | 6.1:-69326923 | None:intergenic |
| GCAGGAATGTTGGGGTCTTT+AGG | 0.226794 | 6.1:+69327176 | MS.gene57812:CDS |
| ACTCTTCACATGCTGTATTA+AGG | 0.241608 | 6.1:-69326973 | None:intergenic |
| CAGGAATGTTGGGGTCTTTA+GGG | 0.264531 | 6.1:+69327177 | MS.gene57812:CDS |
| ACCCTAAGAAAGGTGTTATT+AGG | 0.266748 | 6.1:+69326921 | MS.gene57812:CDS |
| ACACCTTTCTTAGGGTTAAC+AGG | 0.290681 | 6.1:-69326914 | None:intergenic |
| CCCTAAGAAAGGTGTTATTA+GGG | 0.319854 | 6.1:+69326922 | MS.gene57812:CDS |
| GTCACTACCGGTGGGGTTCT+TGG | 0.322883 | 6.1:+69327046 | MS.gene57812:CDS |
| TAATATGTATACTGATTTCA+TGG | 0.347087 | 6.1:-69326627 | None:intergenic |
| ATTGTCAACGGTGTCCTTGC+CGG | 0.371760 | 6.1:-69327074 | None:intergenic |
| CTCAATGTTGTAGTGGTTGA+GGG | 0.376701 | 6.1:+69326863 | MS.gene57812:CDS |
| GACCGTCACATGGGGTTGTC+GGG | 0.380454 | 6.1:-69326775 | None:intergenic |
| CTGATGTGCCATACAAAGTT+AGG | 0.386416 | 6.1:+69327230 | MS.gene57812:CDS |
| AGCTTCTCCGAGCAAGGGTT+GGG | 0.386871 | 6.1:-69326675 | None:intergenic |
| CTCTTCACATGCTGTATTAA+GGG | 0.397035 | 6.1:-69326972 | None:intergenic |
| GGTTGACACAGAAGGCAAAA+AGG | 0.410166 | 6.1:+69326718 | MS.gene57812:CDS |
| AGGTCATGTGCAGGAATGTT+GGG | 0.410673 | 6.1:+69327167 | MS.gene57812:CDS |
| CCCTAATAACACCTTTCTTA+GGG | 0.414565 | 6.1:-69326922 | None:intergenic |
| ACTCAATGTTGTAGTGGTTG+AGG | 0.421669 | 6.1:+69326862 | MS.gene57812:CDS |
| GCAAGGACACCGTTGACAAT+TGG | 0.438091 | 6.1:+69327077 | MS.gene57812:CDS |
| TTGTCAACGGTGTCCTTGCC+GGG | 0.438512 | 6.1:-69327073 | None:intergenic |
| GGGTCTTTAGGGATAGTAAT+GGG | 0.453756 | 6.1:+69327188 | MS.gene57812:CDS |
| GGTTGGAACCTAACTTTGTA+TGG | 0.454358 | 6.1:-69327238 | None:intergenic |
| CAGCTTCTCCGAGCAAGGGT+TGG | 0.454758 | 6.1:-69326676 | None:intergenic |
| TCACATGGGGTTGTCGGGAC+TGG | 0.470206 | 6.1:-69326770 | None:intergenic |
| ACAACCCCATGTGACGGTCG+TGG | 0.470483 | 6.1:+69326779 | MS.gene57812:CDS |
| GGGCCTTGTGTTGTCGGTAG+TGG | 0.472611 | 6.1:+69326800 | MS.gene57812:CDS |
| GGTCGTGGGCCTTGTGTTGT+CGG | 0.474565 | 6.1:+69326794 | MS.gene57812:CDS |
| CGACCGTCACATGGGGTTGT+CGG | 0.478237 | 6.1:-69326776 | None:intergenic |
| ACCCCTGTTAACCCTAAGAA+AGG | 0.480020 | 6.1:+69326911 | MS.gene57812:CDS |
| CACCTTTCTTAGGGTTAACA+GGG | 0.482056 | 6.1:-69326913 | None:intergenic |
| TCTGTGTCAACCACTTGCTC+AGG | 0.489109 | 6.1:-69326707 | None:intergenic |
| TTGTCCACCCAACCCTTGCT+CGG | 0.489235 | 6.1:+69326668 | MS.gene57812:CDS |
| TTGAGTGGACATGTCTCGTT+TGG | 0.518641 | 6.1:-69326845 | None:intergenic |
| CATGTGAAGAGTCCACGATA+TGG | 0.519311 | 6.1:+69326984 | MS.gene57812:CDS |
| AGCGTCAGCTTCTCCGAGCA+AGG | 0.525965 | 6.1:-69326681 | None:intergenic |
| ATGGGGTTGTCGGGACTGGT+CGG | 0.526887 | 6.1:-69326766 | None:intergenic |
| CAAGGCCCACGACCGTCACA+TGG | 0.530644 | 6.1:-69326785 | None:intergenic |
| GAGCAAGGGTTGGGTGGACA+AGG | 0.544353 | 6.1:-69326666 | None:intergenic |
| AAGGTCATGTGCAGGAATGT+TGG | 0.544552 | 6.1:+69327166 | MS.gene57812:CDS |
| GGTGGGGTTCTTGGAAATCC+CGG | 0.552765 | 6.1:+69327055 | MS.gene57812:CDS |
| TTGATTCCTCATCTGGACAA+TGG | 0.554639 | 6.1:+69327020 | MS.gene57812:CDS |
| ATCATCAAGCGTCCATATCG+TGG | 0.559535 | 6.1:-69326996 | None:intergenic |
| CAATGGTTTGTCACTACCGG+TGG | 0.561342 | 6.1:+69327037 | MS.gene57812:CDS |
| CAACCCCATGTGACGGTCGT+GGG | 0.563780 | 6.1:+69326780 | MS.gene57812:CDS |
| AATGGTTTGTCACTACCGGT+GGG | 0.564160 | 6.1:+69327038 | MS.gene57812:CDS |
| AAGTACTTCAAGCAGATGGT+TGG | 0.564447 | 6.1:-69327255 | None:intergenic |
| TTGAAAGTACTTCAAGCAGA+TGG | 0.564545 | 6.1:-69327259 | None:intergenic |
| GGACAATGGTTTGTCACTAC+CGG | 0.566652 | 6.1:+69327034 | MS.gene57812:CDS |
| AAGGCCCACGACCGTCACAT+GGG | 0.567219 | 6.1:-69326784 | None:intergenic |
| TGTCTTGATGTTAAGATCAG+TGG | 0.570079 | 6.1:-69326948 | None:intergenic |
| AAACCACTACCGACAACACA+AGG | 0.571628 | 6.1:-69326803 | None:intergenic |
| TGACGCTTCACCTGAGCAAG+TGG | 0.575987 | 6.1:+69326697 | MS.gene57812:CDS |
| AATCTTGAACCAATTGTCAA+CGG | 0.580218 | 6.1:-69327086 | None:intergenic |
| GGGGTCTTTAGGGATAGTAA+TGG | 0.589720 | 6.1:+69327187 | MS.gene57812:CDS |
| TTCTCCGAGCAAGGGTTGGG+TGG | 0.598373 | 6.1:-69326672 | None:intergenic |
| GACAAACCATTGTCCAGATG+AGG | 0.609229 | 6.1:-69327026 | None:intergenic |
| GTCCCGACAACCCCATGTGA+CGG | 0.611299 | 6.1:+69326773 | MS.gene57812:CDS |
| TGCAGAAATCACATACCGTA+GGG | 0.614159 | 6.1:-69327144 | None:intergenic |
| GCGTCAGCTTCTCCGAGCAA+GGG | 0.616662 | 6.1:-69326680 | None:intergenic |
| TCAACCACTACAACATTGAG+TGG | 0.618412 | 6.1:-69326860 | None:intergenic |
| GGTCATGTGCAGGAATGTTG+GGG | 0.620344 | 6.1:+69327168 | MS.gene57812:CDS |
| GAGCAAGTGGTTGACACAGA+AGG | 0.621958 | 6.1:+69326710 | MS.gene57812:CDS |
| ATTTCTGCAAGGTCATGTGC+AGG | 0.628252 | 6.1:+69327158 | MS.gene57812:CDS |
| TTGCAGAAATCACATACCGT+AGG | 0.628538 | 6.1:-69327145 | None:intergenic |
| TACGGTATGTGATTTCTGCA+AGG | 0.630885 | 6.1:+69327147 | MS.gene57812:CDS |
| GGGATTTCCAAGAACCCCAC+CGG | 0.635438 | 6.1:-69327053 | None:intergenic |
| AGGCCCACGACCGTCACATG+GGG | 0.644940 | 6.1:-69326783 | None:intergenic |
| ATGTCCACTCAATGTTGTAG+TGG | 0.670052 | 6.1:+69326856 | MS.gene57812:CDS |
| TAGTAATGGGAACCAGCGTG+TGG | 0.674297 | 6.1:+69327201 | MS.gene57812:CDS |
| ATGGTTTGTCACTACCGGTG+GGG | 0.675340 | 6.1:+69327039 | MS.gene57812:CDS |
| ACCTTTCTTAGGGTTAACAG+GGG | 0.679673 | 6.1:-69326912 | None:intergenic |
| CATCAGTGAGAGCCACACGC+TGG | 0.681901 | 6.1:-69327213 | None:intergenic |
| GGTTCTTGGAAATCCCGGCA+AGG | 0.687124 | 6.1:+69327060 | MS.gene57812:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| AATCTTGAACCAATTGTCAA+CGG | - | chr6.1:69327089-69327108 | None:intergenic | 30.0% | |
| ACCCTAATAACACCTTTCTT+AGG | - | chr6.1:69326926-69326945 | None:intergenic | 35.0% | |
| ACTCTTCACATGCTGTATTA+AGG | - | chr6.1:69326976-69326995 | None:intergenic | 35.0% | |
| CCCTAATAACACCTTTCTTA+GGG | - | chr6.1:69326925-69326944 | None:intergenic | 35.0% | |
| CTCTTCACATGCTGTATTAA+GGG | - | chr6.1:69326975-69326994 | None:intergenic | 35.0% | |
| TGTCTTGATGTTAAGATCAG+TGG | - | chr6.1:69326951-69326970 | None:intergenic | 35.0% | |
| !! | ACCCTAAGAAAGGTGTTATT+AGG | + | chr6.1:69326921-69326940 | MS.gene57812:CDS | 35.0% |
| !! | CCCTAAGAAAGGTGTTATTA+GGG | + | chr6.1:69326922-69326941 | MS.gene57812:CDS | 35.0% |
| !!! | GATGATTTTGATTCCTCATC+TGG | + | chr6.1:69327013-69327032 | MS.gene57812:CDS | 35.0% |
| ACACAGAAGGCAAAAAGGTT+CGG | + | chr6.1:69326723-69326742 | MS.gene57812:CDS | 40.0% | |
| ACACCTTTCTTAGGGTTAAC+AGG | - | chr6.1:69326917-69326936 | None:intergenic | 40.0% | |
| ACCTTTCTTAGGGTTAACAG+GGG | - | chr6.1:69326915-69326934 | None:intergenic | 40.0% | |
| ACTCAATGTTGTAGTGGTTG+AGG | + | chr6.1:69326862-69326881 | MS.gene57812:CDS | 40.0% | |
| ATGTCCACTCAATGTTGTAG+TGG | + | chr6.1:69326856-69326875 | MS.gene57812:CDS | 40.0% | |
| CACCTTTCTTAGGGTTAACA+GGG | - | chr6.1:69326916-69326935 | None:intergenic | 40.0% | |
| CTCAATGTTGTAGTGGTTGA+GGG | + | chr6.1:69326863-69326882 | MS.gene57812:CDS | 40.0% | |
| CTGATGTGCCATACAAAGTT+AGG | + | chr6.1:69327230-69327249 | MS.gene57812:CDS | 40.0% | |
| GGTTGGAACCTAACTTTGTA+TGG | - | chr6.1:69327241-69327260 | None:intergenic | 40.0% | |
| TACGGTATGTGATTTCTGCA+AGG | + | chr6.1:69327147-69327166 | MS.gene57812:CDS | 40.0% | |
| TCAACCACTACAACATTGAG+TGG | - | chr6.1:69326863-69326882 | None:intergenic | 40.0% | |
| TGCAGAAATCACATACCGTA+GGG | - | chr6.1:69327147-69327166 | None:intergenic | 40.0% | |
| TTGATTCCTCATCTGGACAA+TGG | + | chr6.1:69327020-69327039 | MS.gene57812:CDS | 40.0% | |
| TTGCAGAAATCACATACCGT+AGG | - | chr6.1:69327148-69327167 | None:intergenic | 40.0% | |
| ! | GGGTCTTTAGGGATAGTAAT+GGG | + | chr6.1:69327188-69327207 | MS.gene57812:CDS | 40.0% |
| ! | TAAGCTTGTGTTTTGCCCTA+CGG | + | chr6.1:69327129-69327148 | MS.gene57812:CDS | 40.0% |
| AAACCACTACCGACAACACA+AGG | - | chr6.1:69326806-69326825 | None:intergenic | 45.0% | |
| AAGGTCATGTGCAGGAATGT+TGG | + | chr6.1:69327166-69327185 | MS.gene57812:CDS | 45.0% | |
| ACCCCTGTTAACCCTAAGAA+AGG | + | chr6.1:69326911-69326930 | MS.gene57812:CDS | 45.0% | |
| AGGTCATGTGCAGGAATGTT+GGG | + | chr6.1:69327167-69327186 | MS.gene57812:CDS | 45.0% | |
| ATCATCAAGCGTCCATATCG+TGG | - | chr6.1:69326999-69327018 | None:intergenic | 45.0% | |
| ATTTCTGCAAGGTCATGTGC+AGG | + | chr6.1:69327158-69327177 | MS.gene57812:CDS | 45.0% | |
| CACAGAAGGCAAAAAGGTTC+GGG | + | chr6.1:69326724-69326743 | MS.gene57812:CDS | 45.0% | |
| CAGGAATGTTGGGGTCTTTA+GGG | + | chr6.1:69327177-69327196 | MS.gene57812:CDS | 45.0% | |
| CATGTGAAGAGTCCACGATA+TGG | + | chr6.1:69326984-69327003 | MS.gene57812:CDS | 45.0% | |
| GACAAACCATTGTCCAGATG+AGG | - | chr6.1:69327029-69327048 | None:intergenic | 45.0% | |
| GGTTGACACAGAAGGCAAAA+AGG | + | chr6.1:69326718-69326737 | MS.gene57812:CDS | 45.0% | |
| TTGAGTGGACATGTCTCGTT+TGG | - | chr6.1:69326848-69326867 | None:intergenic | 45.0% | |
| ! | AATGGTTTGTCACTACCGGT+GGG | + | chr6.1:69327038-69327057 | MS.gene57812:CDS | 45.0% |
| ! | GGACAATGGTTTGTCACTAC+CGG | + | chr6.1:69327034-69327053 | MS.gene57812:CDS | 45.0% |
| ! | GGGGTCTTTAGGGATAGTAA+TGG | + | chr6.1:69327187-69327206 | MS.gene57812:CDS | 45.0% |
| ATTGTCAACGGTGTCCTTGC+CGG | - | chr6.1:69327077-69327096 | None:intergenic | 50.0% | |
| GAGCAAGTGGTTGACACAGA+AGG | + | chr6.1:69326710-69326729 | MS.gene57812:CDS | 50.0% | |
| GCAAGGACACCGTTGACAAT+TGG | + | chr6.1:69327077-69327096 | MS.gene57812:CDS | 50.0% | |
| GCAGGAATGTTGGGGTCTTT+AGG | + | chr6.1:69327176-69327195 | MS.gene57812:CDS | 50.0% | |
| GGTCATGTGCAGGAATGTTG+GGG | + | chr6.1:69327168-69327187 | MS.gene57812:CDS | 50.0% | |
| TCTGTGTCAACCACTTGCTC+AGG | - | chr6.1:69326710-69326729 | None:intergenic | 50.0% | |
| ! | ATGGTTTGTCACTACCGGTG+GGG | + | chr6.1:69327039-69327058 | MS.gene57812:CDS | 50.0% |
| ! | CAATGGTTTGTCACTACCGG+TGG | + | chr6.1:69327037-69327056 | MS.gene57812:CDS | 50.0% |
| ! | GTAGTGGTTGAGGGTTTTCG+TGG | + | chr6.1:69326872-69326891 | MS.gene57812:CDS | 50.0% |
| ! | GTTGAGGGTTTTCGTGGTCA+AGG | + | chr6.1:69326878-69326897 | MS.gene57812:CDS | 50.0% |
| ! | TAGTAATGGGAACCAGCGTG+TGG | + | chr6.1:69327201-69327220 | MS.gene57812:CDS | 50.0% |
| AGCTTCTCCGAGCAAGGGTT+GGG | - | chr6.1:69326678-69326697 | None:intergenic | 55.0% | |
| GAAGGCAAAAAGGTTCGGGC+TGG | + | chr6.1:69326728-69326747 | MS.gene57812:CDS | 55.0% | |
| GGGATTTCCAAGAACCCCAC+CGG | - | chr6.1:69327056-69327075 | None:intergenic | 55.0% | |
| GGTGGGGTTCTTGGAAATCC+CGG | + | chr6.1:69327055-69327074 | MS.gene57812:CDS | 55.0% | |
| GGTTCTTGGAAATCCCGGCA+AGG | + | chr6.1:69327060-69327079 | MS.gene57812:CDS | 55.0% | |
| TGACGCTTCACCTGAGCAAG+TGG | + | chr6.1:69326697-69326716 | MS.gene57812:CDS | 55.0% | |
| TTGTCAACGGTGTCCTTGCC+GGG | - | chr6.1:69327076-69327095 | None:intergenic | 55.0% | |
| TTGTCCACCCAACCCTTGCT+CGG | + | chr6.1:69326668-69326687 | MS.gene57812:CDS | 55.0% | |
| AAGGCCCACGACCGTCACAT+GGG | - | chr6.1:69326787-69326806 | None:intergenic | 60.0% | |
| ACAACCCCATGTGACGGTCG+TGG | + | chr6.1:69326779-69326798 | MS.gene57812:CDS | 60.0% | |
| AGCGTCAGCTTCTCCGAGCA+AGG | - | chr6.1:69326684-69326703 | None:intergenic | 60.0% | |
| CAACCCCATGTGACGGTCGT+GGG | + | chr6.1:69326780-69326799 | MS.gene57812:CDS | 60.0% | |
| CAGCTTCTCCGAGCAAGGGT+TGG | - | chr6.1:69326679-69326698 | None:intergenic | 60.0% | |
| CATCAGTGAGAGCCACACGC+TGG | - | chr6.1:69327216-69327235 | None:intergenic | 60.0% | |
| CGACCGTCACATGGGGTTGT+CGG | - | chr6.1:69326779-69326798 | None:intergenic | 60.0% | |
| GACCGTCACATGGGGTTGTC+GGG | - | chr6.1:69326778-69326797 | None:intergenic | 60.0% | |
| GAGCAAGGGTTGGGTGGACA+AGG | - | chr6.1:69326669-69326688 | None:intergenic | 60.0% | |
| GCGTCAGCTTCTCCGAGCAA+GGG | - | chr6.1:69326683-69326702 | None:intergenic | 60.0% | |
| GTCACTACCGGTGGGGTTCT+TGG | + | chr6.1:69327046-69327065 | MS.gene57812:CDS | 60.0% | |
| GTCCCGACAACCCCATGTGA+CGG | + | chr6.1:69326773-69326792 | MS.gene57812:CDS | 60.0% | |
| TCACATGGGGTTGTCGGGAC+TGG | - | chr6.1:69326773-69326792 | None:intergenic | 60.0% | |
| TTCTCCGAGCAAGGGTTGGG+TGG | - | chr6.1:69326675-69326694 | None:intergenic | 60.0% | |
| ! | ATGGGGTTGTCGGGACTGGT+CGG | - | chr6.1:69326769-69326788 | None:intergenic | 60.0% |
| ! | GGGCCTTGTGTTGTCGGTAG+TGG | + | chr6.1:69326800-69326819 | MS.gene57812:CDS | 60.0% |
| ! | GGTCGTGGGCCTTGTGTTGT+CGG | + | chr6.1:69326794-69326813 | MS.gene57812:CDS | 60.0% |
| AGGCCCACGACCGTCACATG+GGG | - | chr6.1:69326786-69326805 | None:intergenic | 65.0% | |
| CAAGGCCCACGACCGTCACA+TGG | - | chr6.1:69326788-69326807 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 69326629 | 69327270 | 69326629 | ID=MS.gene57812 |
| chr6.1 | mRNA | 69326629 | 69327270 | 69326629 | ID=MS.gene57812.t1;Parent=MS.gene57812 |
| chr6.1 | exon | 69326629 | 69327270 | 69326629 | ID=MS.gene57812.t1.exon1;Parent=MS.gene57812.t1 |
| chr6.1 | CDS | 69326629 | 69327270 | 69326629 | ID=cds.MS.gene57812.t1;Parent=MS.gene57812.t1 |
| Gene Sequence |
| Protein sequence |
