AlfalfaGEDB | MS.gene58980

M. sativa cultivar XinJiangDaYe / MS.gene58980

KEGG: K11841
GO: -
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58980.t1	PNX75878.1	73	63	17	0	1	63	28	90	3.30E-14	87

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58980.t1	A0A2K3LBG3	73.0	63	17	0	1	63	28	90	2.4e-14	87.0

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049232	MS.gene58980	0.836997	6.74E-57	-1.69E-46
MS.gene049396	MS.gene58980	0.806074	9.81E-50	-1.69E-46
MS.gene049552	MS.gene58980	0.804855	1.77E-49	-1.69E-46
MS.gene050170	MS.gene58980	0.830194	3.37E-55	-1.69E-46
MS.gene050216	MS.gene58980	0.801916	7.18E-49	-1.69E-46
MS.gene050323	MS.gene58980	0.825363	4.88E-54	-1.69E-46
MS.gene050496	MS.gene58980	0.841376	4.93E-58	-1.69E-46
MS.gene050502	MS.gene58980	0.807993	3.85E-50	-1.69E-46
MS.gene050504	MS.gene58980	0.804824	1.79E-49	-1.69E-46
MS.gene050675	MS.gene58980	0.813286	2.76E-51	-1.69E-46

Showing 1 to 10 of 49 entries

Previous1 2 3 4 5Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Find 27 sgRNAs with CRISPR-Local

Find 24 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACGGCCGCGCCTCTGCCACA+GGG	0.616011	5.2:-39983680	MS.gene58980:CDS
AGCAAGTTCCACATGCCCTG+TGG	0.700479	5.2:+39983665	None:intergenic
ATATAAATTTCAGATTGCAA+TGG	0.566444	5.2:-39983733	None:intergenic
CACGGCCGCGCCTCTGCCAC+AGG	0.395156	5.2:-39983681	MS.gene58980:CDS
CATAGCAGGGACACATTTCT+TGG	0.264407	5.2:+39983602	None:intergenic
CATGCCCTGTGGCAGAGGCG+CGG	0.598879	5.2:+39983676	None:intergenic
CATGTGGAACTTGCTGCAGT+CGG	0.613537	5.2:-39983657	MS.gene58980:CDS
CGCCTCTGCCACAGGGCATG+TGG	0.480960	5.2:-39983673	MS.gene58980:CDS
CGGTGCAACTGCGTGCCACC+AGG	0.530335	5.2:-39983637	MS.gene58980:CDS
CTAGGTGCCGTTTATCATCA+CGG	0.637583	5.2:-39983699	MS.gene58980:CDS

Showing 1 to 10 of 27 entries

Previous1 2 3Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
CATAGCAGGGACACATTTCT+TGG	+	chr5.2:39983672-39983691	None:intergenic	45.0%
TCTTGGTTACCAGAAGTTCC+TGG	+	chr5.2:39983655-39983674	None:intergenic	45.0%
TATGCCAACCAAACCACCCA+TGG	-	chr5.2:39983688-39983707	MS.gene58980:CDS	50.0%
TGGTTACCAGAAGTTCCTGG+TGG	+	chr5.2:39983652-39983671	None:intergenic	50.0%
AGCAAGTTCCACATGCCCTG+TGG	+	chr5.2:39983609-39983628	None:intergenic	55.0%
GCACTTGCGTCTGCCTCCAT+GGG	+	chr5.2:39983707-39983726	None:intergenic	60.0%
GCCAACCAAACCACCCATGG+AGG	-	chr5.2:39983691-39983710	MS.gene58980:CDS	60.0%
GGCGCGGCCGTGATGATAAA+CGG	+	chr5.2:39983582-39983601	None:intergenic	60.0%
GTCTGCCTCCATGGGTGGTT+TGG	+	chr5.2:39983699-39983718	None:intergenic	60.0%
TGCGTGCCACCAGGAACTTC+TGG	-	chr5.2:39983643-39983662	MS.gene58980:CDS	60.0%

Showing 1 to 10 of 24 entries

Previous1 2 3Next

Chromosome	Type	Strat	End	Strand	Name
chr5.2	gene	39983551	39983742	39983551	ID=MS.gene58980
chr5.2	mRNA	39983551	39983742	39983551	ID=MS.gene58980.t1;Parent=MS.gene58980
chr5.2	exon	39983551	39983742	39983551	ID=MS.gene58980.t1.exon1;Parent=MS.gene58980.t1
chr5.2	CDS	39983551	39983742	39983551	ID=cds.MS.gene58980.t1;Parent=MS.gene58980.t1

Gene Sequence	>MS.gene58980 ATTGCAATGGAGCATGTGCTGCTAGGTGCCGTTTATCATCACGGCCGCGCCTCTGCCACAGGGCATGTGGAACTTGCTGCAGTCGGTGCAACTGCGTGCCACCAGGAACTTCTGGTAACCAAGAAATGTGTCCCTGCTATGCCAACCAAACCACCCATGGAGGCAGACGCAAGTGCCCTTGAATTGAGTTGA
Protein sequence	>MS.gene58980.t1 IAMEHVLLGAVYHHGRASATGHVELAAVGATACHQELLVTKKCVPAMPTKPPMEADASALELS