Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60091.t1 | XP_003627800.1 | 83.7 | 258 | 41 | 1 | 1 | 258 | 1 | 257 | 2.70E-118 | 434.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60091.t1 | Q9FLE8 | 47.0 | 166 | 73 | 4 | 106 | 256 | 224 | 389 | 2.7e-34 | 147.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60091.t1 | Q1RU64 | 83.7 | 258 | 41 | 1 | 1 | 258 | 1 | 257 | 1.9e-118 | 434.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049283 | MS.gene60091 | 0.814796 | 1.28E-51 | -1.69E-46 |
| MS.gene049368 | MS.gene60091 | 0.813859 | 2.07E-51 | -1.69E-46 |
| MS.gene049499 | MS.gene60091 | 0.816398 | 5.65E-52 | -1.69E-46 |
| MS.gene049983 | MS.gene60091 | 0.8113 | 7.50E-51 | -1.69E-46 |
| MS.gene050414 | MS.gene60091 | 0.800259 | 1.57E-48 | -1.69E-46 |
| MS.gene050646 | MS.gene60091 | 0.826308 | 2.91E-54 | -1.69E-46 |
| MS.gene051209 | MS.gene60091 | 0.81135 | 7.32E-51 | -1.69E-46 |
| MS.gene051279 | MS.gene60091 | 0.801624 | 8.25E-49 | -1.69E-46 |
| MS.gene05308 | MS.gene60091 | 0.810665 | 1.03E-50 | -1.69E-46 |
| MS.gene053272 | MS.gene60091 | -0.85356 | 2.20E-61 | -1.69E-46 |
| MS.gene053931 | MS.gene60091 | 0.825486 | 4.57E-54 | -1.69E-46 |
| MS.gene05458 | MS.gene60091 | 0.820799 | 5.67E-53 | -1.69E-46 |
| MS.gene056045 | MS.gene60091 | 0.832205 | 1.08E-55 | -1.69E-46 |
| MS.gene056363 | MS.gene60091 | 0.825913 | 3.62E-54 | -1.69E-46 |
| MS.gene05686 | MS.gene60091 | 0.854893 | 9.09E-62 | -1.69E-46 |
| MS.gene056973 | MS.gene60091 | 0.83413 | 3.58E-56 | -1.69E-46 |
| MS.gene057174 | MS.gene60091 | 0.817015 | 4.11E-52 | -1.69E-46 |
| MS.gene057208 | MS.gene60091 | 0.817768 | 2.78E-52 | -1.69E-46 |
| MS.gene057598 | MS.gene60091 | 0.802408 | 5.69E-49 | -1.69E-46 |
| MS.gene058781 | MS.gene60091 | 0.838633 | 2.56E-57 | -1.69E-46 |
| MS.gene058783 | MS.gene60091 | 0.815228 | 1.03E-51 | -1.69E-46 |
| MS.gene05952 | MS.gene60091 | 0.803039 | 4.22E-49 | -1.69E-46 |
| MS.gene05985 | MS.gene60091 | -0.810147 | 1.33E-50 | -1.69E-46 |
| MS.gene060244 | MS.gene60091 | 0.815848 | 7.49E-52 | -1.69E-46 |
| MS.gene060527 | MS.gene60091 | 0.816506 | 5.34E-52 | -1.69E-46 |
| MS.gene060777 | MS.gene60091 | 0.840342 | 9.21E-58 | -1.69E-46 |
| MS.gene060933 | MS.gene60091 | 0.835385 | 1.73E-56 | -1.69E-46 |
| MS.gene060935 | MS.gene60091 | 0.847453 | 1.15E-59 | -1.69E-46 |
| MS.gene060937 | MS.gene60091 | 0.852176 | 5.48E-61 | -1.69E-46 |
| MS.gene061100 | MS.gene60091 | 0.825681 | 4.11E-54 | -1.69E-46 |
| MS.gene061160 | MS.gene60091 | 0.812461 | 4.19E-51 | -1.69E-46 |
| MS.gene061188 | MS.gene60091 | 0.804123 | 2.51E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60091.t1 | MTR_8g038440 | 92.248 | 258 | 19 | 1 | 1 | 258 | 1 | 257 | 1.90e-164 | 455 |
| MS.gene60091.t1 | MTR_3g017490 | 54.340 | 265 | 98 | 5 | 14 | 258 | 2 | 263 | 9.35e-87 | 259 |
| MS.gene60091.t1 | MTR_7g090230 | 67.742 | 155 | 48 | 1 | 102 | 256 | 273 | 425 | 1.88e-71 | 225 |
| MS.gene60091.t1 | MTR_1g051180 | 64.024 | 164 | 47 | 2 | 102 | 256 | 204 | 364 | 1.07e-68 | 216 |
| MS.gene60091.t1 | MTR_5g083110 | 46.766 | 201 | 92 | 6 | 60 | 255 | 48 | 238 | 2.81e-48 | 160 |
| MS.gene60091.t1 | MTR_3g465550 | 52.667 | 150 | 67 | 3 | 102 | 251 | 83 | 228 | 8.45e-48 | 158 |
| MS.gene60091.t1 | MTR_5g072400 | 48.077 | 156 | 76 | 3 | 100 | 255 | 103 | 253 | 1.12e-42 | 146 |
| MS.gene60091.t1 | MTR_7g106500 | 46.914 | 162 | 74 | 3 | 103 | 256 | 122 | 279 | 2.06e-42 | 146 |
| MS.gene60091.t1 | MTR_7g104720 | 45.402 | 174 | 84 | 3 | 89 | 256 | 237 | 405 | 1.35e-41 | 147 |
| MS.gene60091.t1 | MTR_7g010090 | 43.602 | 211 | 91 | 7 | 65 | 256 | 231 | 432 | 6.17e-39 | 140 |
| MS.gene60091.t1 | MTR_1g090400 | 45.098 | 153 | 79 | 2 | 103 | 255 | 221 | 368 | 1.13e-38 | 138 |
| MS.gene60091.t1 | MTR_3g071510 | 47.468 | 158 | 76 | 4 | 100 | 255 | 82 | 234 | 5.63e-38 | 133 |
| MS.gene60091.t1 | MTR_6g011640 | 37.900 | 219 | 112 | 7 | 54 | 257 | 189 | 398 | 1.62e-35 | 130 |
| MS.gene60091.t1 | MTR_8g106900 | 45.570 | 158 | 78 | 3 | 103 | 255 | 119 | 273 | 1.73e-33 | 122 |
| MS.gene60091.t1 | MTR_8g099665 | 40.764 | 157 | 89 | 2 | 103 | 255 | 211 | 367 | 1.09e-32 | 122 |
| MS.gene60091.t1 | MTR_3g030520 | 41.250 | 160 | 79 | 3 | 113 | 257 | 141 | 300 | 1.19e-26 | 105 |
| MS.gene60091.t1 | MTR_5g048870 | 43.373 | 83 | 47 | 0 | 106 | 188 | 68 | 150 | 7.21e-15 | 70.5 |
| MS.gene60091.t1 | MTR_1g095960 | 35.165 | 91 | 51 | 2 | 151 | 235 | 32 | 120 | 3.73e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60091.t1 | AT5G13810 | 56.078 | 255 | 90 | 6 | 18 | 255 | 23 | 272 | 2.33e-87 | 261 |
| MS.gene60091.t1 | AT3G57070 | 61.146 | 157 | 60 | 1 | 101 | 257 | 262 | 417 | 6.71e-61 | 197 |
| MS.gene60091.t1 | AT2G41330 | 60.526 | 152 | 58 | 1 | 106 | 257 | 253 | 402 | 1.10e-56 | 186 |
| MS.gene60091.t1 | AT5G58530 | 50.000 | 162 | 73 | 3 | 100 | 255 | 106 | 265 | 2.17e-47 | 159 |
| MS.gene60091.t1 | AT3G28850 | 45.506 | 178 | 70 | 3 | 106 | 256 | 250 | 427 | 4.13e-39 | 141 |
| MS.gene60091.t1 | AT5G39865 | 47.619 | 168 | 69 | 5 | 106 | 256 | 224 | 389 | 7.66e-39 | 139 |
| MS.gene60091.t1 | AT5G06470 | 43.125 | 160 | 78 | 3 | 103 | 255 | 85 | 238 | 7.21e-37 | 130 |
| MS.gene60091.t1 | AT4G10630 | 40.933 | 193 | 98 | 5 | 78 | 255 | 142 | 333 | 8.44e-37 | 133 |
| MS.gene60091.t1 | AT1G32760 | 47.436 | 156 | 78 | 2 | 104 | 255 | 158 | 313 | 2.93e-36 | 131 |
| MS.gene60091.t1 | AT5G03870 | 38.767 | 227 | 127 | 4 | 35 | 255 | 163 | 383 | 8.28e-36 | 131 |
| MS.gene60091.t1 | AT1G64500 | 42.331 | 163 | 85 | 3 | 103 | 258 | 208 | 368 | 7.63e-34 | 125 |
| MS.gene60091.t1 | AT3G11773 | 42.953 | 149 | 78 | 4 | 108 | 255 | 7 | 149 | 6.87e-31 | 112 |
| MS.gene60091.t1 | AT5G01420 | 43.137 | 153 | 83 | 3 | 103 | 255 | 252 | 400 | 2.54e-30 | 117 |
| MS.gene60091.t1 | AT3G11773 | 42.982 | 114 | 59 | 3 | 142 | 255 | 92 | 199 | 6.24e-21 | 87.8 |
Find 54 sgRNAs with CRISPR-Local
Find 78 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACGGTGCGTTCGAGGTTT+TGG | 0.195818 | 8.4:-59719364 | None:intergenic |
| TGGTGAATTGGGGAAGATTT+TGG | 0.232721 | 8.4:+59719823 | MS.gene60091:CDS |
| CTTTGTGAGGTTGGTGAATT+GGG | 0.267297 | 8.4:+59719812 | MS.gene60091:CDS |
| TGTTTGGATTGTAATGAAAA+TGG | 0.281412 | 8.4:+59719971 | MS.gene60091:CDS |
| GTGAGAGCTGTGGTGATGTT+AGG | 0.304707 | 8.4:+59719879 | MS.gene60091:CDS |
| TTTCAATGGATATTTGTTAT+AGG | 0.316739 | 8.4:+59719684 | MS.gene60091:CDS |
| CGTTCTTCATGAGATGGTTT+TGG | 0.326719 | 8.4:-59719434 | None:intergenic |
| GCTTTGTGAGGTTGGTGAAT+TGG | 0.368885 | 8.4:+59719811 | MS.gene60091:CDS |
| AGGGTTAATGAATAGGTGTT+TGG | 0.389424 | 8.4:+59719955 | MS.gene60091:CDS |
| AGGATGAAGGGTTAATGAAT+AGG | 0.418071 | 8.4:+59719948 | MS.gene60091:CDS |
| GAACGCACCGTTTCGCTTCG+CGG | 0.422378 | 8.4:+59719374 | MS.gene60091:CDS |
| TGCCGTGTGGGAATTGTTGT+GGG | 0.428411 | 8.4:+59719906 | MS.gene60091:CDS |
| GTACCGGGTAATTTAATAAC+CGG | 0.434591 | 8.4:-59719542 | None:intergenic |
| ACGAGGATTGTTATGCGGTT+AGG | 0.449157 | 8.4:+59719618 | MS.gene60091:CDS |
| AATGGATATTTGTTATAGGA+AGG | 0.466420 | 8.4:+59719688 | MS.gene60091:CDS |
| AACATTGCCGCGAAGCGAAA+CGG | 0.484573 | 8.4:-59719381 | None:intergenic |
| GAGGGGTTTCCGAAGACAAA+AGG | 0.492372 | 8.4:+59719845 | MS.gene60091:CDS |
| TTGCCGTGTGGGAATTGTTG+TGG | 0.494413 | 8.4:+59719905 | MS.gene60091:CDS |
| GAAGCGAAACGGTGCGTTCG+AGG | 0.500394 | 8.4:-59719370 | None:intergenic |
| CACAATTCGATCTTCTGTAC+CGG | 0.501465 | 8.4:-59719558 | None:intergenic |
| ATAAAGCAGCTTTGTGAGGT+TGG | 0.517233 | 8.4:+59719803 | MS.gene60091:CDS |
| AGTGATCGTTCTTCATGAGA+TGG | 0.522242 | 8.4:-59719440 | None:intergenic |
| GAAGAATGTGACGTTGCCGC+AGG | 0.527795 | 8.4:+59719742 | MS.gene60091:CDS |
| ACAACAATACGACGTCGTCT+AGG | 0.530821 | 8.4:+59719273 | MS.gene60091:CDS |
| CCTCAAGAGATACAACAATT+CGG | 0.531573 | 8.4:-59720007 | None:intergenic |
| CCGAATTGTTGTATCTCTTG+AGG | 0.543890 | 8.4:+59720007 | MS.gene60091:CDS |
| GTCTATTTCACGAGTTTACG+TGG | 0.553100 | 8.4:+59719581 | MS.gene60091:CDS |
| CCTCAACCGTTCTTTCACAT+CGG | 0.555438 | 8.4:+59719304 | MS.gene60091:CDS |
| TGACGAGCGAGATGTTTCAA+TGG | 0.556242 | 8.4:+59719670 | MS.gene60091:CDS |
| GCACCGGTTATTAAATTACC+CGG | 0.560307 | 8.4:+59719539 | MS.gene60091:CDS |
| GTGGGAATTGTTGTGGGAGT+AGG | 0.568754 | 8.4:+59719912 | MS.gene60091:CDS |
| CCGATGTGAAAGAACGGTTG+AGG | 0.569163 | 8.4:-59719304 | None:intergenic |
| GAATCATGTGGGTGGTGCTG+AGG | 0.579201 | 8.4:+59719778 | MS.gene60091:CDS |
| TTTATCCGAGGGAATCATGT+GGG | 0.579756 | 8.4:+59719767 | MS.gene60091:CDS |
| GAAGGAATTGATGAGTGTGA+TGG | 0.580805 | 8.4:+59719706 | MS.gene60091:CDS |
| CACCACCCACATGATTCCCT+CGG | 0.588736 | 8.4:-59719772 | None:intergenic |
| AGATACAACAATTCGGACAC+CGG | 0.609638 | 8.4:-59720000 | None:intergenic |
| GAATTGTTGTGGGAGTAGGA+AGG | 0.615372 | 8.4:+59719916 | MS.gene60091:CDS |
| GGGTTTCCGAAGACAAAAGG+TGG | 0.618149 | 8.4:+59719848 | MS.gene60091:CDS |
| ACAATTCGATCTTCTGTACC+GGG | 0.625107 | 8.4:-59719557 | None:intergenic |
| GAAATCGATTGATTATGCAC+CGG | 0.626408 | 8.4:+59719523 | MS.gene60091:CDS |
| GTAATGAAAATGGATTGATC+CGG | 0.626470 | 8.4:+59719981 | MS.gene60091:CDS |
| GGGTATGTTTGTGAGAGCTG+TGG | 0.630131 | 8.4:+59719869 | MS.gene60091:CDS |
| AAGGAATTGATGAGTGTGAT+GGG | 0.632999 | 8.4:+59719707 | MS.gene60091:CDS |
| ATCCGAGGGAATCATGTGGG+TGG | 0.638690 | 8.4:+59719770 | MS.gene60091:CDS |
| TGGAATTAGACGAACATACG+AGG | 0.640954 | 8.4:+59719601 | MS.gene60091:CDS |
| CTCCCACAACAATTCCCACA+CGG | 0.650155 | 8.4:-59719908 | None:intergenic |
| AAAATCAACAGAATCAACAT+CGG | 0.654380 | 8.4:+59719481 | MS.gene60091:CDS |
| TACGAACCGATGTGAAAGAA+CGG | 0.655850 | 8.4:-59719310 | None:intergenic |
| AACATACGAGGATTGTTATG+CGG | 0.658386 | 8.4:+59719613 | MS.gene60091:CDS |
| GGTGATAAAGCAGCTTTGTG+AGG | 0.673728 | 8.4:+59719799 | MS.gene60091:CDS |
| TTTGTGAGGTTGGTGAATTG+GGG | 0.686084 | 8.4:+59719813 | MS.gene60091:CDS |
| CGGTACAGAAGATCGAATTG+TGG | 0.690796 | 8.4:+59719559 | MS.gene60091:CDS |
| GGTTTCCGAAGACAAAAGGT+GGG | 0.695423 | 8.4:+59719849 | MS.gene60091:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTCAATGGATATTTGTTAT+AGG | + | chr8.4:59719684-59719703 | MS.gene60091:CDS | 20.0% |
| ! | AAAATCAACAGAATCAACAT+CGG | + | chr8.4:59719481-59719500 | MS.gene60091:CDS | 25.0% |
| ! | TGTTTGGATTGTAATGAAAA+TGG | + | chr8.4:59719971-59719990 | MS.gene60091:CDS | 25.0% |
| !!! | AATCGATTTCGATGATTTTA+AGG | - | chr8.4:59719513-59719532 | None:intergenic | 25.0% |
| !!! | AATGGATATTTGTTATAGGA+AGG | + | chr8.4:59719688-59719707 | MS.gene60091:CDS | 25.0% |
| !!! | ATGTTGATTCTGTTGATTTT+AGG | - | chr8.4:59719481-59719500 | None:intergenic | 25.0% |
| !!! | TGTTGATTCTGTTGATTTTA+GGG | - | chr8.4:59719480-59719499 | None:intergenic | 25.0% |
| !! | GATGATTTTGAGAGGTTTTA+GGG | + | chr8.4:59719640-59719659 | MS.gene60091:CDS | 30.0% |
| !! | GTAATGAAAATGGATTGATC+CGG | + | chr8.4:59719981-59720000 | MS.gene60091:CDS | 30.0% |
| AACATACGAGGATTGTTATG+CGG | + | chr8.4:59719613-59719632 | MS.gene60091:CDS | 35.0% | |
| AAGGAATTGATGAGTGTGAT+GGG | + | chr8.4:59719707-59719726 | MS.gene60091:CDS | 35.0% | |
| AGGATGAAGGGTTAATGAAT+AGG | + | chr8.4:59719948-59719967 | MS.gene60091:CDS | 35.0% | |
| AGGGTTAATGAATAGGTGTT+TGG | + | chr8.4:59719955-59719974 | MS.gene60091:CDS | 35.0% | |
| GAAATCGATTGATTATGCAC+CGG | + | chr8.4:59719523-59719542 | MS.gene60091:CDS | 35.0% | |
| GTACCGGGTAATTTAATAAC+CGG | - | chr8.4:59719545-59719564 | None:intergenic | 35.0% | |
| ! | AAGGTTTTTGATGAGGATGA+AGG | + | chr8.4:59719935-59719954 | MS.gene60091:CDS | 35.0% |
| ! | AGGTTTTTGATGAGGATGAA+GGG | + | chr8.4:59719936-59719955 | MS.gene60091:CDS | 35.0% |
| !! | GGATGATTTTGAGAGGTTTT+AGG | + | chr8.4:59719639-59719658 | MS.gene60091:CDS | 35.0% |
| !!! | TTTGAGAGGTTTTAGGGTTT+GGG | + | chr8.4:59719646-59719665 | MS.gene60091:CDS | 35.0% |
| !!! | TTTTGAGAGGTTTTAGGGTT+TGG | + | chr8.4:59719645-59719664 | MS.gene60091:CDS | 35.0% |
| ACAATTCGATCTTCTGTACC+GGG | - | chr8.4:59719560-59719579 | None:intergenic | 40.0% | |
| AGATACAACAATTCGGACAC+CGG | - | chr8.4:59720003-59720022 | None:intergenic | 40.0% | |
| AGTGATCGTTCTTCATGAGA+TGG | - | chr8.4:59719443-59719462 | None:intergenic | 40.0% | |
| CACAATTCGATCTTCTGTAC+CGG | - | chr8.4:59719561-59719580 | None:intergenic | 40.0% | |
| GAAGGAATTGATGAGTGTGA+TGG | + | chr8.4:59719706-59719725 | MS.gene60091:CDS | 40.0% | |
| GTCTATTTCACGAGTTTACG+TGG | + | chr8.4:59719581-59719600 | MS.gene60091:CDS | 40.0% | |
| TACGAACCGATGTGAAAGAA+CGG | - | chr8.4:59719313-59719332 | None:intergenic | 40.0% | |
| TGGAATTAGACGAACATACG+AGG | + | chr8.4:59719601-59719620 | MS.gene60091:CDS | 40.0% | |
| TTTATCCGAGGGAATCATGT+GGG | + | chr8.4:59719767-59719786 | MS.gene60091:CDS | 40.0% | |
| ! | ACATACCCACCTTTTGTCTT+CGG | - | chr8.4:59719857-59719876 | None:intergenic | 40.0% |
| ! | ATAAAGCAGCTTTGTGAGGT+TGG | + | chr8.4:59719803-59719822 | MS.gene60091:CDS | 40.0% |
| ! | ATGTTAGGTTTTTGCCGTGT+GGG | + | chr8.4:59719894-59719913 | MS.gene60091:CDS | 40.0% |
| ! | CGTTCTTCATGAGATGGTTT+TGG | - | chr8.4:59719437-59719456 | None:intergenic | 40.0% |
| ! | GAATTGGGGAAGATTTTGGA+GGG | + | chr8.4:59719827-59719846 | MS.gene60091:CDS | 40.0% |
| ! | GAGTAGGAAGGTTTTTGATG+AGG | + | chr8.4:59719928-59719947 | MS.gene60091:CDS | 40.0% |
| ! | TGAATTGGGGAAGATTTTGG+AGG | + | chr8.4:59719826-59719845 | MS.gene60091:CDS | 40.0% |
| ! | TGGTGAATTGGGGAAGATTT+TGG | + | chr8.4:59719823-59719842 | MS.gene60091:CDS | 40.0% |
| ! | TTTTATCCGAGGGAATCATG+TGG | + | chr8.4:59719766-59719785 | MS.gene60091:CDS | 40.0% |
| !! | AATTGGGGAAGATTTTGGAG+GGG | + | chr8.4:59719828-59719847 | MS.gene60091:CDS | 40.0% |
| !! | CTTTGTGAGGTTGGTGAATT+GGG | + | chr8.4:59719812-59719831 | MS.gene60091:CDS | 40.0% |
| !! | GCACCGGTTATTAAATTACC+CGG | + | chr8.4:59719539-59719558 | MS.gene60091:CDS | 40.0% |
| !! | TTTGTGAGGTTGGTGAATTG+GGG | + | chr8.4:59719813-59719832 | MS.gene60091:CDS | 40.0% |
| !!! | AGGTTTTGGGTTTTTTGTGG+CGG | - | chr8.4:59719353-59719372 | None:intergenic | 40.0% |
| !!! | TCGAGGTTTTGGGTTTTTTG+TGG | - | chr8.4:59719356-59719375 | None:intergenic | 40.0% |
| !!! | TCTTCATGAGATGGTTTTGG+TGG | - | chr8.4:59719434-59719453 | None:intergenic | 40.0% |
| ACAACAATACGACGTCGTCT+AGG | + | chr8.4:59719273-59719292 | MS.gene60091:CDS | 45.0% | |
| ACGAGGATTGTTATGCGGTT+AGG | + | chr8.4:59719618-59719637 | MS.gene60091:CDS | 45.0% | |
| CCTCAACCGTTCTTTCACAT+CGG | + | chr8.4:59719304-59719323 | MS.gene60091:CDS | 45.0% | |
| CGGTACAGAAGATCGAATTG+TGG | + | chr8.4:59719559-59719578 | MS.gene60091:CDS | 45.0% | |
| GAATTGTTGTGGGAGTAGGA+AGG | + | chr8.4:59719916-59719935 | MS.gene60091:CDS | 45.0% | |
| GGTTTCCGAAGACAAAAGGT+GGG | + | chr8.4:59719849-59719868 | MS.gene60091:CDS | 45.0% | |
| TGACGAGCGAGATGTTTCAA+TGG | + | chr8.4:59719670-59719689 | MS.gene60091:CDS | 45.0% | |
| TTCCCTCGGATAAAAACCTG+CGG | - | chr8.4:59719761-59719780 | None:intergenic | 45.0% | |
| ! | GATGTTAGGTTTTTGCCGTG+TGG | + | chr8.4:59719893-59719912 | MS.gene60091:CDS | 45.0% |
| ! | GCGGTTAGGATGATTTTGAG+AGG | + | chr8.4:59719632-59719651 | MS.gene60091:CDS | 45.0% |
| ! | GGTGATAAAGCAGCTTTGTG+AGG | + | chr8.4:59719799-59719818 | MS.gene60091:CDS | 45.0% |
| ! | TTTGTGGCGGTTTTTCATCG+TGG | - | chr8.4:59719340-59719359 | None:intergenic | 45.0% |
| !! | GCTTTGTGAGGTTGGTGAAT+TGG | + | chr8.4:59719811-59719830 | MS.gene60091:CDS | 45.0% |
| AACATTGCCGCGAAGCGAAA+CGG | - | chr8.4:59719384-59719403 | None:intergenic | 50.0% | |
| CCGATGTGAAAGAACGGTTG+AGG | - | chr8.4:59719307-59719326 | None:intergenic | 50.0% | |
| CTCCCACAACAATTCCCACA+CGG | - | chr8.4:59719911-59719930 | None:intergenic | 50.0% | |
| GAGGGGTTTCCGAAGACAAA+AGG | + | chr8.4:59719845-59719864 | MS.gene60091:CDS | 50.0% | |
| GGGTATGTTTGTGAGAGCTG+TGG | + | chr8.4:59719869-59719888 | MS.gene60091:CDS | 50.0% | |
| GGGTTTCCGAAGACAAAAGG+TGG | + | chr8.4:59719848-59719867 | MS.gene60091:CDS | 50.0% | |
| GTGGGAATTGTTGTGGGAGT+AGG | + | chr8.4:59719912-59719931 | MS.gene60091:CDS | 50.0% | |
| TGCCGTGTGGGAATTGTTGT+GGG | + | chr8.4:59719906-59719925 | MS.gene60091:CDS | 50.0% | |
| TTGCCGTGTGGGAATTGTTG+TGG | + | chr8.4:59719905-59719924 | MS.gene60091:CDS | 50.0% | |
| ! | AAACGGTGCGTTCGAGGTTT+TGG | - | chr8.4:59719367-59719386 | None:intergenic | 50.0% |
| ! | AACGGTGCGTTCGAGGTTTT+GGG | - | chr8.4:59719366-59719385 | None:intergenic | 50.0% |
| ! | GTGAGAGCTGTGGTGATGTT+AGG | + | chr8.4:59719879-59719898 | MS.gene60091:CDS | 50.0% |
| ! | TGCCGCAGGTTTTTATCCGA+GGG | + | chr8.4:59719756-59719775 | MS.gene60091:CDS | 50.0% |
| ! | TTGCCGCAGGTTTTTATCCG+AGG | + | chr8.4:59719755-59719774 | MS.gene60091:CDS | 50.0% |
| ATCCGAGGGAATCATGTGGG+TGG | + | chr8.4:59719770-59719789 | MS.gene60091:CDS | 55.0% | |
| CACCACCCACATGATTCCCT+CGG | - | chr8.4:59719775-59719794 | None:intergenic | 55.0% | |
| GAAGAATGTGACGTTGCCGC+AGG | + | chr8.4:59719742-59719761 | MS.gene60091:CDS | 55.0% | |
| ! | GAATCATGTGGGTGGTGCTG+AGG | + | chr8.4:59719778-59719797 | MS.gene60091:CDS | 55.0% |
| GAACGCACCGTTTCGCTTCG+CGG | + | chr8.4:59719374-59719393 | MS.gene60091:CDS | 60.0% | |
| GAAGCGAAACGGTGCGTTCG+AGG | - | chr8.4:59719373-59719392 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 59719251 | 59720027 | 59719251 | ID=MS.gene60091 |
| chr8.4 | mRNA | 59719251 | 59720027 | 59719251 | ID=MS.gene60091.t1;Parent=MS.gene60091 |
| chr8.4 | exon | 59719251 | 59720027 | 59719251 | ID=MS.gene60091.t1.exon1;Parent=MS.gene60091.t1 |
| chr8.4 | CDS | 59719251 | 59720027 | 59719251 | ID=cds.MS.gene60091.t1;Parent=MS.gene60091.t1 |
| Gene Sequence |
| Protein sequence |
