Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61001.t1 | XP_003628787.1 | 99.1 | 344 | 2 | 1 | 1 | 343 | 1 | 344 | 5.40E-192 | 680.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61001.t1 | A0JJZ6 | 58.1 | 334 | 132 | 5 | 3 | 334 | 12 | 339 | 1.4e-103 | 377.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61001.t1 | G7LH14 | 99.1 | 344 | 2 | 1 | 1 | 343 | 1 | 344 | 3.9e-192 | 680.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049674 | MS.gene61001 | 0.801764 | 7.72E-49 | -1.69E-46 |
| MS.gene050085 | MS.gene61001 | 0.807981 | 3.88E-50 | -1.69E-46 |
| MS.gene050114 | MS.gene61001 | 0.803154 | 3.99E-49 | -1.69E-46 |
| MS.gene050317 | MS.gene61001 | 0.808074 | 3.70E-50 | -1.69E-46 |
| MS.gene050359 | MS.gene61001 | 0.816661 | 4.93E-52 | -1.69E-46 |
| MS.gene050386 | MS.gene61001 | 0.809394 | 1.93E-50 | -1.69E-46 |
| MS.gene050752 | MS.gene61001 | 0.800759 | 1.24E-48 | -1.69E-46 |
| MS.gene050838 | MS.gene61001 | 0.845142 | 4.88E-59 | -1.69E-46 |
| MS.gene051003 | MS.gene61001 | 0.816177 | 6.32E-52 | -1.69E-46 |
| MS.gene051233 | MS.gene61001 | 0.817406 | 3.35E-52 | -1.69E-46 |
| MS.gene051343 | MS.gene61001 | 0.81984 | 9.40E-53 | -1.69E-46 |
| MS.gene051748 | MS.gene61001 | 0.801964 | 7.02E-49 | -1.69E-46 |
| MS.gene051756 | MS.gene61001 | 0.827427 | 1.57E-54 | -1.69E-46 |
| MS.gene051903 | MS.gene61001 | 0.801939 | 7.11E-49 | -1.69E-46 |
| MS.gene052242 | MS.gene61001 | -0.809978 | 1.45E-50 | -1.69E-46 |
| MS.gene053058 | MS.gene61001 | 0.840483 | 8.46E-58 | -1.69E-46 |
| MS.gene053564 | MS.gene61001 | 0.801676 | 8.05E-49 | -1.69E-46 |
| MS.gene053590 | MS.gene61001 | 0.801039 | 1.09E-48 | -1.69E-46 |
| MS.gene05380 | MS.gene61001 | 0.803736 | 3.02E-49 | -1.69E-46 |
| MS.gene053952 | MS.gene61001 | 0.803617 | 3.20E-49 | -1.69E-46 |
| MS.gene055311 | MS.gene61001 | 0.822294 | 2.56E-53 | -1.69E-46 |
| MS.gene056097 | MS.gene61001 | 0.81654 | 5.25E-52 | -1.69E-46 |
| MS.gene056181 | MS.gene61001 | 0.834413 | 3.04E-56 | -1.69E-46 |
| MS.gene056787 | MS.gene61001 | 0.830783 | 2.42E-55 | -1.69E-46 |
| MS.gene057057 | MS.gene61001 | 0.804784 | 1.83E-49 | -1.69E-46 |
| MS.gene057094 | MS.gene61001 | 0.818685 | 1.72E-52 | -1.69E-46 |
| MS.gene057234 | MS.gene61001 | 0.807973 | 3.89E-50 | -1.69E-46 |
| MS.gene057452 | MS.gene61001 | -0.818675 | 1.73E-52 | -1.69E-46 |
| MS.gene05781 | MS.gene61001 | 0.817894 | 2.60E-52 | -1.69E-46 |
| MS.gene057999 | MS.gene61001 | 0.800725 | 1.26E-48 | -1.69E-46 |
| MS.gene058054 | MS.gene61001 | 0.801031 | 1.09E-48 | -1.69E-46 |
| MS.gene058238 | MS.gene61001 | 0.807725 | 4.39E-50 | -1.69E-46 |
| MS.gene058261 | MS.gene61001 | 0.801928 | 7.14E-49 | -1.69E-46 |
| MS.gene058638 | MS.gene61001 | 0.800027 | 1.75E-48 | -1.69E-46 |
| MS.gene058639 | MS.gene61001 | 0.801255 | 9.81E-49 | -1.69E-46 |
| MS.gene058758 | MS.gene61001 | 0.810453 | 1.14E-50 | -1.69E-46 |
| MS.gene059171 | MS.gene61001 | 0.836379 | 9.69E-57 | -1.69E-46 |
| MS.gene060465 | MS.gene61001 | 0.801642 | 8.18E-49 | -1.69E-46 |
| MS.gene060563 | MS.gene61001 | 0.809224 | 2.10E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61001.t1 | MTR_8g066720 | 97.911 | 383 | 7 | 1 | 1 | 382 | 1 | 383 | 0.0 | 759 |
| MS.gene61001.t1 | MTR_4g105690 | 50.159 | 315 | 141 | 5 | 9 | 319 | 10 | 312 | 1.23e-103 | 309 |
| MS.gene61001.t1 | MTR_1g105930 | 43.533 | 317 | 156 | 6 | 8 | 318 | 32 | 331 | 1.28e-83 | 258 |
| MS.gene61001.t1 | MTR_5g005370 | 42.188 | 320 | 166 | 6 | 8 | 323 | 13 | 317 | 4.84e-77 | 241 |
| MS.gene61001.t1 | MTR_5g005370 | 42.368 | 321 | 164 | 7 | 8 | 323 | 13 | 317 | 2.69e-76 | 241 |
| MS.gene61001.t1 | MTR_5g005370 | 41.745 | 321 | 155 | 9 | 8 | 323 | 13 | 306 | 1.18e-70 | 224 |
| MS.gene61001.t1 | MTR_5g005370 | 41.892 | 296 | 153 | 6 | 32 | 323 | 2 | 282 | 3.78e-68 | 216 |
| MS.gene61001.t1 | MTR_5g005370 | 42.034 | 295 | 150 | 7 | 30 | 319 | 7 | 285 | 5.99e-68 | 216 |
| MS.gene61001.t1 | MTR_1g105930 | 42.578 | 256 | 124 | 6 | 69 | 318 | 63 | 301 | 2.12e-58 | 192 |
| MS.gene61001.t1 | MTR_3g067725 | 25.697 | 323 | 206 | 10 | 4 | 305 | 158 | 467 | 1.85e-19 | 90.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61001.t1 | AT5G16760 | 57.460 | 315 | 126 | 4 | 8 | 322 | 10 | 316 | 3.98e-126 | 366 |
| MS.gene61001.t1 | AT4G08170 | 44.582 | 323 | 161 | 6 | 4 | 322 | 38 | 346 | 1.72e-88 | 271 |
| MS.gene61001.t1 | AT4G33770 | 42.222 | 315 | 161 | 6 | 8 | 318 | 82 | 379 | 6.44e-78 | 245 |
| MS.gene61001.t1 | AT4G33770 | 41.724 | 290 | 148 | 6 | 33 | 318 | 14 | 286 | 2.38e-70 | 223 |
| MS.gene61001.t1 | AT4G08170 | 43.609 | 266 | 132 | 6 | 61 | 322 | 7 | 258 | 2.11e-68 | 217 |
| MS.gene61001.t1 | AT4G08170 | 43.723 | 231 | 112 | 6 | 96 | 322 | 1 | 217 | 1.70e-55 | 182 |
| MS.gene61001.t1 | AT4G08170 | 43.723 | 231 | 112 | 6 | 96 | 322 | 1 | 217 | 1.70e-55 | 182 |
| MS.gene61001.t1 | AT4G08170 | 43.723 | 231 | 112 | 6 | 96 | 322 | 1 | 217 | 1.70e-55 | 182 |
| MS.gene61001.t1 | AT4G08170 | 43.723 | 231 | 112 | 6 | 96 | 322 | 1 | 217 | 1.70e-55 | 182 |
| MS.gene61001.t1 | AT4G08170 | 43.723 | 231 | 112 | 6 | 96 | 322 | 1 | 217 | 1.70e-55 | 182 |
| MS.gene61001.t1 | AT4G33770 | 41.410 | 227 | 112 | 6 | 96 | 318 | 1 | 210 | 1.61e-46 | 159 |
Find 87 sgRNAs with CRISPR-Local
Find 101 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAACGGTCCTTGATCGATTA+AGG | 0.193555 | 8.1:-37764581 | None:intergenic |
| CTGAGCTTAGGGTTAGGGTT+GGG | 0.247742 | 8.1:+37764749 | MS.gene61001:CDS |
| CATAAATCACGATCTGTTTC+GGG | 0.253527 | 8.1:-37764804 | None:intergenic |
| TCATAAATCACGATCTGTTT+CGG | 0.307302 | 8.1:-37764805 | None:intergenic |
| AGGGTTTGGTTGAATCGATT+TGG | 0.308710 | 8.1:-37764561 | None:intergenic |
| TAACCGAATTTCAATGCTTC+AGG | 0.312842 | 8.1:+37764720 | MS.gene61001:CDS |
| TGAGCTTAGGGTTAGGGTTG+GGG | 0.323983 | 8.1:+37764750 | MS.gene61001:CDS |
| GAGAAGAAACACGGTGTAAT+AGG | 0.332803 | 8.1:+37764454 | MS.gene61001:CDS |
| GAGCGCGAAATCGCATAAAA+TGG | 0.333115 | 8.1:+37764906 | MS.gene61001:CDS |
| ATTGATATTAATTACTTTCC+AGG | 0.339891 | 8.1:+37765324 | MS.gene61001:CDS |
| TTGTTTCTGAGCTTAGGGTT+AGG | 0.343936 | 8.1:+37764743 | MS.gene61001:CDS |
| TCCTTGATCGATTAAGGGTT+TGG | 0.350560 | 8.1:-37764575 | None:intergenic |
| AGGGTTGGGGTTGATGAAAA+AGG | 0.360059 | 8.1:+37764763 | MS.gene61001:CDS |
| TGTTTCTGAGCTTAGGGTTA+GGG | 0.363650 | 8.1:+37764744 | MS.gene61001:CDS |
| TCAGGTTGTTTCTGAGCTTA+GGG | 0.365845 | 8.1:+37764738 | MS.gene61001:CDS |
| GGAGAAGGTGTTGGGTGTTT+CGG | 0.367359 | 8.1:+37765080 | MS.gene61001:CDS |
| CTCTTTCTGATGGTCAGGCT+TGG | 0.368219 | 8.1:+37764836 | MS.gene61001:CDS |
| GCGTCGAGGATAACAGCATT+AGG | 0.370797 | 8.1:-37764673 | None:intergenic |
| TTCAGGTTGTTTCTGAGCTT+AGG | 0.380717 | 8.1:+37764737 | MS.gene61001:CDS |
| GTGATTCGTGATTCTAGATA+TGG | 0.383544 | 8.1:+37765285 | MS.gene61001:CDS |
| AATCGTCGCCGTAGAGTTTG+TGG | 0.389966 | 8.1:-37764615 | None:intergenic |
| AGGTGTCGAATTTGGCGAAT+AGG | 0.390772 | 8.1:+37765124 | MS.gene61001:CDS |
| CGTGAAGAGGAAGTCTTTAC+CGG | 0.394637 | 8.1:+37765047 | MS.gene61001:CDS |
| CAACCTGAAGCATTGAAATT+CGG | 0.403669 | 8.1:-37764723 | None:intergenic |
| AACGGTCCTTGATCGATTAA+GGG | 0.404496 | 8.1:-37764580 | None:intergenic |
| CGATGAGGGTAAATCTGTTA+AGG | 0.414736 | 8.1:+37765443 | MS.gene61001:CDS |
| ACAAATTCCTGCAAAACAAT+AGG | 0.415605 | 8.1:-37764970 | None:intergenic |
| GGTGTCGAATTTGGCGAATA+GGG | 0.420308 | 8.1:+37765125 | MS.gene61001:CDS |
| TGAAGACGCTCAATCGCTTC+CGG | 0.428110 | 8.1:-37764697 | None:intergenic |
| GTTTCTGAGGAGAAGGTGTT+GGG | 0.434384 | 8.1:+37765072 | MS.gene61001:CDS |
| TCTTTCTGATGGTCAGGCTT+GGG | 0.434503 | 8.1:+37764837 | MS.gene61001:CDS |
| CGTCGAGGATAACAGCATTA+GGG | 0.435245 | 8.1:-37764672 | None:intergenic |
| CCGTGTTTCTTCTCAGCCAT+TGG | 0.437192 | 8.1:-37764445 | None:intergenic |
| AGAGACTCTTTCTGATGGTC+AGG | 0.437751 | 8.1:+37764831 | MS.gene61001:CDS |
| GTGATTCTAGATATGGTAAT+CGG | 0.451796 | 8.1:+37765292 | MS.gene61001:CDS |
| TTGCAGGAATTTGTGAATCA+TGG | 0.462425 | 8.1:+37764979 | MS.gene61001:CDS |
| CCAGGGTATGCTAAAATGCC+GGG | 0.463616 | 8.1:+37765342 | MS.gene61001:CDS |
| TCTGAGCTTAGGGTTAGGGT+TGG | 0.465651 | 8.1:+37764748 | MS.gene61001:CDS |
| TAATTCCGCGTGATGAAGCT+AGG | 0.466617 | 8.1:-37764531 | None:intergenic |
| ACAAACTCTACGGCGACGAT+TGG | 0.468878 | 8.1:+37764617 | MS.gene61001:CDS |
| CCCATCGGCCACAAGCGGCT+TGG | 0.473003 | 8.1:-37764884 | None:intergenic |
| GCCAAGCCGCTTGTGGCCGA+TGG | 0.474500 | 8.1:+37764883 | MS.gene61001:CDS |
| TACTACTGAGATGCCGCCTC+AGG | 0.477569 | 8.1:+37765197 | MS.gene61001:CDS |
| TCCAGGGTATGCTAAAATGC+CGG | 0.479177 | 8.1:+37765341 | MS.gene61001:CDS |
| CGATTTAATGTGCAAGGAGG+TGG | 0.479403 | 8.1:+37765395 | MS.gene61001:CDS |
| GAATTTGAAATTGTTGAAGC+TGG | 0.486045 | 8.1:-37764645 | None:intergenic |
| ATGCGATTTCGCGCTCCCAT+CGG | 0.494478 | 8.1:-37764899 | None:intergenic |
| TTGATATTGCTAGCGGATTG+AGG | 0.499364 | 8.1:+37765229 | MS.gene61001:CDS |
| TTGATATTAATTACTTTCCA+GGG | 0.504005 | 8.1:+37765325 | MS.gene61001:CDS |
| ACCGGATGTTTCTGAGGAGA+AGG | 0.506747 | 8.1:+37765065 | MS.gene61001:CDS |
| CCAAGCCGCTTGTGGCCGAT+GGG | 0.512701 | 8.1:+37764884 | MS.gene61001:CDS |
| TGCTGTTATCCTCGACGCGC+CGG | 0.514143 | 8.1:+37764678 | MS.gene61001:CDS |
| GTGGATGAAAATGTGGGAAA+GGG | 0.524112 | 8.1:+37765414 | MS.gene61001:CDS |
| ACCAAACCCTTAATCGATCA+AGG | 0.529800 | 8.1:+37764574 | MS.gene61001:CDS |
| GTCAAAACTTTCTCATACCC+CGG | 0.530072 | 8.1:-37765360 | None:intergenic |
| GCGCTCCCATCGGCCACAAG+CGG | 0.533700 | 8.1:-37764889 | None:intergenic |
| TGTTTCTGAGGAGAAGGTGT+TGG | 0.537995 | 8.1:+37765071 | MS.gene61001:CDS |
| GAAGGTGTTGGGTGTTTCGG+AGG | 0.540674 | 8.1:+37765083 | MS.gene61001:CDS |
| ACCTTCTCCTCAGAAACATC+CGG | 0.547331 | 8.1:-37765066 | None:intergenic |
| ACAAGCGGCTTGGCTATCAC+TGG | 0.551887 | 8.1:-37764874 | None:intergenic |
| GTCTTTACCGGATGTTTCTG+AGG | 0.553032 | 8.1:+37765059 | MS.gene61001:CDS |
| CAAGGAGGTGGATGAAAATG+TGG | 0.555366 | 8.1:+37765407 | MS.gene61001:CDS |
| AGTGATAGCCAAGCCGCTTG+TGG | 0.560133 | 8.1:+37764876 | MS.gene61001:CDS |
| ATCATGTTCGTTGCGTGAAG+AGG | 0.560526 | 8.1:+37765034 | MS.gene61001:CDS |
| CAATCGCTTCCGGCGCGTCG+AGG | 0.561052 | 8.1:-37764687 | None:intergenic |
| TGCATCCTCCACAAACTCTA+CGG | 0.564378 | 8.1:+37764607 | MS.gene61001:CDS |
| GAAAATGTGGGAAAGGGTCA+TGG | 0.564519 | 8.1:+37765420 | MS.gene61001:CDS |
| GGTGGATGAAAATGTGGGAA+AGG | 0.565772 | 8.1:+37765413 | MS.gene61001:CDS |
| GGAAAGGGTCATGGCGATGA+GGG | 0.569173 | 8.1:+37765429 | MS.gene61001:CDS |
| TTTATTGTTGATATTGCTAG+CGG | 0.570268 | 8.1:+37765222 | MS.gene61001:CDS |
| GATAAAGAGACTCTTTCTGA+TGG | 0.578931 | 8.1:+37764826 | MS.gene61001:CDS |
| AATTCCGCGTGATGAAGCTA+GGG | 0.593077 | 8.1:-37764530 | None:intergenic |
| GGGAAAGGGTCATGGCGATG+AGG | 0.603201 | 8.1:+37765428 | MS.gene61001:CDS |
| TTTGGCGAATAGGGATAGTG+TGG | 0.627810 | 8.1:+37765134 | MS.gene61001:CDS |
| AATTCCTGCAAAACAATAGG+CGG | 0.644595 | 8.1:-37764967 | None:intergenic |
| AAGGAGGTGGATGAAAATGT+GGG | 0.648297 | 8.1:+37765408 | MS.gene61001:CDS |
| CAGGAATTTGTGAATCATGG+TGG | 0.650492 | 8.1:+37764982 | MS.gene61001:CDS |
| CCAATGGCTGAGAAGAAACA+CGG | 0.656741 | 8.1:+37764445 | None:intergenic |
| TTGTGGAGGATGCAATCGAA+CGG | 0.658727 | 8.1:-37764598 | None:intergenic |
| TCAGCTTATTCAACGCCCCG+TGG | 0.664928 | 8.1:-37764942 | None:intergenic |
| CAGGGTATGCTAAAATGCCG+GGG | 0.680216 | 8.1:+37765343 | MS.gene61001:CDS |
| TGTCGATTTAATGTGCAAGG+AGG | 0.690716 | 8.1:+37765392 | MS.gene61001:CDS |
| TCAACAATAAAAGCCTGAGG+CGG | 0.694025 | 8.1:-37765210 | None:intergenic |
| CGTCGCCGTAGAGTTTGTGG+AGG | 0.694812 | 8.1:-37764612 | None:intergenic |
| ATATCAACAATAAAAGCCTG+AGG | 0.711191 | 8.1:-37765213 | None:intergenic |
| TTAACCCTAGCTTCATCACG+CGG | 0.741697 | 8.1:+37764526 | MS.gene61001:CDS |
| CTAGGGTTAAGAGTGAGTCG+CGG | 0.746406 | 8.1:-37764513 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAAAAAGATAAATCTGTTA+AGG | + | chr8.1:37765476-37765495 | MS.gene61001:CDS | 20.0% |
| !! | ATTGATATTAATTACTTTCC+AGG | + | chr8.1:37765324-37765343 | MS.gene61001:CDS | 20.0% |
| !! | TTGATATTAATTACTTTCCA+GGG | + | chr8.1:37765325-37765344 | MS.gene61001:CDS | 20.0% |
| ! | TTTATTGTTGATATTGCTAG+CGG | + | chr8.1:37765222-37765241 | MS.gene61001:CDS | 25.0% |
| !! | GTTTTATAAGATGATGAGTT+TGG | + | chr8.1:37765170-37765189 | MS.gene61001:CDS | 25.0% |
| !!! | ATGAAACTGTTTTGTTTCTT+TGG | - | chr8.1:37764493-37764512 | None:intergenic | 25.0% |
| !!! | ATTTTTAAGGTGTATGTTGT+TGG | + | chr8.1:37765009-37765028 | MS.gene61001:CDS | 25.0% |
| ACAAATTCCTGCAAAACAAT+AGG | - | chr8.1:37764973-37764992 | None:intergenic | 30.0% | |
| ATATCAACAATAAAAGCCTG+AGG | - | chr8.1:37765216-37765235 | None:intergenic | 30.0% | |
| GTGATTCTAGATATGGTAAT+CGG | + | chr8.1:37765292-37765311 | MS.gene61001:CDS | 30.0% | |
| TCATAAATCACGATCTGTTT+CGG | - | chr8.1:37764808-37764827 | None:intergenic | 30.0% | |
| ! | GAATTTGAAATTGTTGAAGC+TGG | - | chr8.1:37764648-37764667 | None:intergenic | 30.0% |
| !!! | TTTTGTCGATTTAATGTGCA+AGG | + | chr8.1:37765389-37765408 | MS.gene61001:CDS | 30.0% |
| AATTCCTGCAAAACAATAGG+CGG | - | chr8.1:37764970-37764989 | None:intergenic | 35.0% | |
| CATAAATCACGATCTGTTTC+GGG | - | chr8.1:37764807-37764826 | None:intergenic | 35.0% | |
| GATAAAGAGACTCTTTCTGA+TGG | + | chr8.1:37764826-37764845 | MS.gene61001:CDS | 35.0% | |
| GTGATTCGTGATTCTAGATA+TGG | + | chr8.1:37765285-37765304 | MS.gene61001:CDS | 35.0% | |
| TAACCGAATTTCAATGCTTC+AGG | + | chr8.1:37764720-37764739 | MS.gene61001:CDS | 35.0% | |
| TTGCAGGAATTTGTGAATCA+TGG | + | chr8.1:37764979-37764998 | MS.gene61001:CDS | 35.0% | |
| !! | CAACCTGAAGCATTGAAATT+CGG | - | chr8.1:37764726-37764745 | None:intergenic | 35.0% |
| !! | TCATGGTGGTGTGATTTTTA+AGG | + | chr8.1:37764996-37765015 | MS.gene61001:CDS | 35.0% |
| AACGGTCCTTGATCGATTAA+GGG | - | chr8.1:37764583-37764602 | None:intergenic | 40.0% | |
| AAGGAGGTGGATGAAAATGT+GGG | + | chr8.1:37765408-37765427 | MS.gene61001:CDS | 40.0% | |
| ACCAAACCCTTAATCGATCA+AGG | + | chr8.1:37764574-37764593 | MS.gene61001:CDS | 40.0% | |
| CAGGAATTTGTGAATCATGG+TGG | + | chr8.1:37764982-37765001 | MS.gene61001:CDS | 40.0% | |
| CGATGAGGGTAAATCTGTTA+AGG | + | chr8.1:37765443-37765462 | MS.gene61001:CDS | 40.0% | |
| GAGAAGAAACACGGTGTAAT+AGG | + | chr8.1:37764454-37764473 | MS.gene61001:CDS | 40.0% | |
| GTCAAAACTTTCTCATACCC+CGG | - | chr8.1:37765363-37765382 | None:intergenic | 40.0% | |
| GTGGATGAAAATGTGGGAAA+GGG | + | chr8.1:37765414-37765433 | MS.gene61001:CDS | 40.0% | |
| TCAACAATAAAAGCCTGAGG+CGG | - | chr8.1:37765213-37765232 | None:intergenic | 40.0% | |
| TCCTTGATCGATTAAGGGTT+TGG | - | chr8.1:37764578-37764597 | None:intergenic | 40.0% | |
| ! | AGGGTTTGGTTGAATCGATT+TGG | - | chr8.1:37764564-37764583 | None:intergenic | 40.0% |
| ! | TGTTTCTGAGCTTAGGGTTA+GGG | + | chr8.1:37764744-37764763 | MS.gene61001:CDS | 40.0% |
| !! | TCAGGTTGTTTCTGAGCTTA+GGG | + | chr8.1:37764738-37764757 | MS.gene61001:CDS | 40.0% |
| !! | TGTCGATTTAATGTGCAAGG+AGG | + | chr8.1:37765392-37765411 | MS.gene61001:CDS | 40.0% |
| !! | TTCAGGTTGTTTCTGAGCTT+AGG | + | chr8.1:37764737-37764756 | MS.gene61001:CDS | 40.0% |
| !! | TTGATATTGCTAGCGGATTG+AGG | + | chr8.1:37765229-37765248 | MS.gene61001:CDS | 40.0% |
| !! | TTGTTTCTGAGCTTAGGGTT+AGG | + | chr8.1:37764743-37764762 | MS.gene61001:CDS | 40.0% |
| !!! | GGATTTGTTATCGTTTTCGC+AGG | + | chr8.1:37765104-37765123 | MS.gene61001:CDS | 40.0% |
| AAAAAGGCGGCGAAACATTC+GGG | + | chr8.1:37764779-37764798 | MS.gene61001:CDS | 45.0% | |
| AATTCCGCGTGATGAAGCTA+GGG | - | chr8.1:37764533-37764552 | None:intergenic | 45.0% | |
| ACCTTCTCCTCAGAAACATC+CGG | - | chr8.1:37765069-37765088 | None:intergenic | 45.0% | |
| AGAGACTCTTTCTGATGGTC+AGG | + | chr8.1:37764831-37764850 | MS.gene61001:CDS | 45.0% | |
| ATCATGTTCGTTGCGTGAAG+AGG | + | chr8.1:37765034-37765053 | MS.gene61001:CDS | 45.0% | |
| CAAGGAGGTGGATGAAAATG+TGG | + | chr8.1:37765407-37765426 | MS.gene61001:CDS | 45.0% | |
| CGATTTAATGTGCAAGGAGG+TGG | + | chr8.1:37765395-37765414 | MS.gene61001:CDS | 45.0% | |
| CGTCGAGGATAACAGCATTA+GGG | - | chr8.1:37764675-37764694 | None:intergenic | 45.0% | |
| CGTGAAGAGGAAGTCTTTAC+CGG | + | chr8.1:37765047-37765066 | MS.gene61001:CDS | 45.0% | |
| GAAAAAGGCGGCGAAACATT+CGG | + | chr8.1:37764778-37764797 | MS.gene61001:CDS | 45.0% | |
| GAAAATGTGGGAAAGGGTCA+TGG | + | chr8.1:37765420-37765439 | MS.gene61001:CDS | 45.0% | |
| GAACGGTCCTTGATCGATTA+AGG | - | chr8.1:37764584-37764603 | None:intergenic | 45.0% | |
| GAGCGCGAAATCGCATAAAA+TGG | + | chr8.1:37764906-37764925 | MS.gene61001:CDS | 45.0% | |
| GGTGGATGAAAATGTGGGAA+AGG | + | chr8.1:37765413-37765432 | MS.gene61001:CDS | 45.0% | |
| TAATTCCGCGTGATGAAGCT+AGG | - | chr8.1:37764534-37764553 | None:intergenic | 45.0% | |
| TCCAGGGTATGCTAAAATGC+CGG | + | chr8.1:37765341-37765360 | MS.gene61001:CDS | 45.0% | |
| TCTTTCTGATGGTCAGGCTT+GGG | + | chr8.1:37764837-37764856 | MS.gene61001:CDS | 45.0% | |
| TGCATCCTCCACAAACTCTA+CGG | + | chr8.1:37764607-37764626 | MS.gene61001:CDS | 45.0% | |
| TTAACCCTAGCTTCATCACG+CGG | + | chr8.1:37764526-37764545 | MS.gene61001:CDS | 45.0% | |
| TTGTGGAGGATGCAATCGAA+CGG | - | chr8.1:37764601-37764620 | None:intergenic | 45.0% | |
| TTTGGCGAATAGGGATAGTG+TGG | + | chr8.1:37765134-37765153 | MS.gene61001:CDS | 45.0% | |
| ! | GGTGTCGAATTTGGCGAATA+GGG | + | chr8.1:37765125-37765144 | MS.gene61001:CDS | 45.0% |
| ! | GTCTTTACCGGATGTTTCTG+AGG | + | chr8.1:37765059-37765078 | MS.gene61001:CDS | 45.0% |
| ! | TGTTTCTGAGGAGAAGGTGT+TGG | + | chr8.1:37765071-37765090 | MS.gene61001:CDS | 45.0% |
| !! | AGGGTTGGGGTTGATGAAAA+AGG | + | chr8.1:37764763-37764782 | MS.gene61001:CDS | 45.0% |
| !! | AGGTGTCGAATTTGGCGAAT+AGG | + | chr8.1:37765124-37765143 | MS.gene61001:CDS | 45.0% |
| !! | GAAACCGCCTATTGTTTTGC+AGG | + | chr8.1:37764963-37764982 | MS.gene61001:CDS | 45.0% |
| !! | GTTGGGGTTGATGAAAAAGG+CGG | + | chr8.1:37764766-37764785 | MS.gene61001:CDS | 45.0% |
| !! | GTTTCTGAGGAGAAGGTGTT+GGG | + | chr8.1:37765072-37765091 | MS.gene61001:CDS | 45.0% |
| !!! | ATGGCGCTTGTTTTTAGCCA+CGG | + | chr8.1:37764925-37764944 | MS.gene61001:CDS | 45.0% |
| !!! | GTTTTCGCAGGTGTCGAATT+TGG | + | chr8.1:37765116-37765135 | MS.gene61001:CDS | 45.0% |
| AATCGTCGCCGTAGAGTTTG+TGG | - | chr8.1:37764618-37764637 | None:intergenic | 50.0% | |
| ACAAACTCTACGGCGACGAT+TGG | + | chr8.1:37764617-37764636 | MS.gene61001:CDS | 50.0% | |
| CAGGGTATGCTAAAATGCCG+GGG | + | chr8.1:37765343-37765362 | MS.gene61001:CDS | 50.0% | |
| CCAGGGTATGCTAAAATGCC+GGG | + | chr8.1:37765342-37765361 | MS.gene61001:CDS | 50.0% | |
| CTAGGGTTAAGAGTGAGTCG+CGG | - | chr8.1:37764516-37764535 | None:intergenic | 50.0% | |
| CTCTTTCTGATGGTCAGGCT+TGG | + | chr8.1:37764836-37764855 | MS.gene61001:CDS | 50.0% | |
| CTGAGCTTAGGGTTAGGGTT+GGG | + | chr8.1:37764749-37764768 | MS.gene61001:CDS | 50.0% | |
| GCGTCGAGGATAACAGCATT+AGG | - | chr8.1:37764676-37764695 | None:intergenic | 50.0% | |
| TCTGAGCTTAGGGTTAGGGT+TGG | + | chr8.1:37764748-37764767 | MS.gene61001:CDS | 50.0% | |
| TGAAGACGCTCAATCGCTTC+CGG | - | chr8.1:37764700-37764719 | None:intergenic | 50.0% | |
| TGAGCTTAGGGTTAGGGTTG+GGG | + | chr8.1:37764750-37764769 | MS.gene61001:CDS | 50.0% | |
| ! | ACCGGATGTTTCTGAGGAGA+AGG | + | chr8.1:37765065-37765084 | MS.gene61001:CDS | 50.0% |
| !! | GGAGAAGGTGTTGGGTGTTT+CGG | + | chr8.1:37765080-37765099 | MS.gene61001:CDS | 50.0% |
| !!! | TGGCGCTTGTTTTTAGCCAC+GGG | + | chr8.1:37764926-37764945 | MS.gene61001:CDS | 50.0% |
| AGTGATAGCCAAGCCGCTTG+TGG | + | chr8.1:37764876-37764895 | MS.gene61001:CDS | 55.0% | |
| ATGCGATTTCGCGCTCCCAT+CGG | - | chr8.1:37764902-37764921 | None:intergenic | 55.0% | |
| GGAAAGGGTCATGGCGATGA+GGG | + | chr8.1:37765429-37765448 | MS.gene61001:CDS | 55.0% | |
| TACTACTGAGATGCCGCCTC+AGG | + | chr8.1:37765197-37765216 | MS.gene61001:CDS | 55.0% | |
| TCAGCTTATTCAACGCCCCG+TGG | - | chr8.1:37764945-37764964 | None:intergenic | 55.0% | |
| ! | ACAAGCGGCTTGGCTATCAC+TGG | - | chr8.1:37764877-37764896 | None:intergenic | 55.0% |
| !! | CCCGGCATTTTAGCATACCC+TGG | - | chr8.1:37765345-37765364 | None:intergenic | 55.0% |
| !! | GAAGGTGTTGGGTGTTTCGG+AGG | + | chr8.1:37765083-37765102 | MS.gene61001:CDS | 55.0% |
| !!! | GGCGCTTGTTTTTAGCCACG+GGG | + | chr8.1:37764927-37764946 | MS.gene61001:CDS | 55.0% |
| CGTCGCCGTAGAGTTTGTGG+AGG | - | chr8.1:37764615-37764634 | None:intergenic | 60.0% | |
| GGGAAAGGGTCATGGCGATG+AGG | + | chr8.1:37765428-37765447 | MS.gene61001:CDS | 60.0% | |
| TGCTGTTATCCTCGACGCGC+CGG | + | chr8.1:37764678-37764697 | MS.gene61001:CDS | 60.0% | |
| CCAAGCCGCTTGTGGCCGAT+GGG | + | chr8.1:37764884-37764903 | MS.gene61001:CDS | 65.0% | |
| CAATCGCTTCCGGCGCGTCG+AGG | - | chr8.1:37764690-37764709 | None:intergenic | 70.0% | |
| CCCATCGGCCACAAGCGGCT+TGG | - | chr8.1:37764887-37764906 | None:intergenic | 70.0% | |
| GCCAAGCCGCTTGTGGCCGA+TGG | + | chr8.1:37764883-37764902 | MS.gene61001:CDS | 70.0% | |
| GCGCTCCCATCGGCCACAAG+CGG | - | chr8.1:37764892-37764911 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 37764448 | 37765596 | 37764448 | ID=MS.gene61001 |
| chr8.1 | mRNA | 37764448 | 37765596 | 37764448 | ID=MS.gene61001.t1;Parent=MS.gene61001 |
| chr8.1 | exon | 37764448 | 37765596 | 37764448 | ID=MS.gene61001.t1.exon1;Parent=MS.gene61001.t1 |
| chr8.1 | CDS | 37764448 | 37765596 | 37764448 | ID=cds.MS.gene61001.t1;Parent=MS.gene61001.t1 |
| Gene Sequence |
| Protein sequence |
