Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61183.t1 | XP_013465830.1 | 96.6 | 233 | 8 | 0 | 1 | 233 | 1 | 233 | 3.80E-124 | 454.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61183.t1 | O94675 | 24.8 | 218 | 122 | 7 | 50 | 232 | 59 | 269 | 2.6e-12 | 73.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61183.t1 | A0A072VE84 | 96.6 | 233 | 8 | 0 | 1 | 233 | 1 | 233 | 2.7e-124 | 454.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049756 | MS.gene61183 | 0.807801 | 4.23E-50 | -1.69E-46 |
| MS.gene050277 | MS.gene61183 | 0.809998 | 1.43E-50 | -1.69E-46 |
| MS.gene050303 | MS.gene61183 | 0.843157 | 1.67E-58 | -1.69E-46 |
| MS.gene050623 | MS.gene61183 | -0.818326 | 2.08E-52 | -1.69E-46 |
| MS.gene051633 | MS.gene61183 | 0.805447 | 1.33E-49 | -1.69E-46 |
| MS.gene051700 | MS.gene61183 | 0.817151 | 3.83E-52 | -1.69E-46 |
| MS.gene05188 | MS.gene61183 | 0.824815 | 6.58E-54 | -1.69E-46 |
| MS.gene052012 | MS.gene61183 | 0.80928 | 2.05E-50 | -1.69E-46 |
| MS.gene052376 | MS.gene61183 | 0.809949 | 1.47E-50 | -1.69E-46 |
| MS.gene052858 | MS.gene61183 | 0.806185 | 9.30E-50 | -1.69E-46 |
| MS.gene052860 | MS.gene61183 | 0.806258 | 8.98E-50 | -1.69E-46 |
| MS.gene053008 | MS.gene61183 | 0.802556 | 5.31E-49 | -1.69E-46 |
| MS.gene055603 | MS.gene61183 | 0.80527 | 1.45E-49 | -1.69E-46 |
| MS.gene056552 | MS.gene61183 | 0.828266 | 9.89E-55 | -1.69E-46 |
| MS.gene056631 | MS.gene61183 | 0.815014 | 1.15E-51 | -1.69E-46 |
| MS.gene057057 | MS.gene61183 | 0.820134 | 8.05E-53 | -1.69E-46 |
| MS.gene057140 | MS.gene61183 | 0.824325 | 8.58E-54 | -1.69E-46 |
| MS.gene058182 | MS.gene61183 | 0.800765 | 1.24E-48 | -1.69E-46 |
| MS.gene058238 | MS.gene61183 | 0.832248 | 1.05E-55 | -1.69E-46 |
| MS.gene058549 | MS.gene61183 | 0.808538 | 2.95E-50 | -1.69E-46 |
| MS.gene058906 | MS.gene61183 | 0.81964 | 1.04E-52 | -1.69E-46 |
| MS.gene059249 | MS.gene61183 | 0.811588 | 6.50E-51 | -1.69E-46 |
| MS.gene059569 | MS.gene61183 | 0.802203 | 6.27E-49 | -1.69E-46 |
| MS.gene05979 | MS.gene61183 | 0.800941 | 1.14E-48 | -1.69E-46 |
| MS.gene059830 | MS.gene61183 | 0.810864 | 9.32E-51 | -1.69E-46 |
| MS.gene06001 | MS.gene61183 | 0.808966 | 2.39E-50 | -1.69E-46 |
| MS.gene06011 | MS.gene61183 | 0.801165 | 1.02E-48 | -1.69E-46 |
| MS.gene060297 | MS.gene61183 | 0.815468 | 9.11E-52 | -1.69E-46 |
| MS.gene060586 | MS.gene61183 | 0.820218 | 7.70E-53 | -1.69E-46 |
| MS.gene060907 | MS.gene61183 | 0.919875 | 2.60E-87 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61183.t1 | MTR_1g013120 | 96.567 | 233 | 8 | 0 | 1 | 233 | 1 | 233 | 2.88e-170 | 468 |
| MS.gene61183.t1 | MTR_4g006560 | 43.069 | 202 | 106 | 6 | 36 | 233 | 40 | 236 | 2.15e-54 | 174 |
| MS.gene61183.t1 | MTR_7g063520 | 30.380 | 237 | 146 | 8 | 11 | 233 | 23 | 254 | 1.43e-21 | 90.1 |
| MS.gene61183.t1 | MTR_5g080880 | 31.381 | 239 | 146 | 9 | 4 | 232 | 24 | 254 | 1.01e-20 | 89.4 |
| MS.gene61183.t1 | MTR_3g007690 | 63.889 | 72 | 13 | 2 | 1 | 71 | 1 | 60 | 7.01e-20 | 85.5 |
| MS.gene61183.t1 | MTR_5g080870 | 29.143 | 175 | 98 | 7 | 61 | 232 | 68 | 219 | 2.82e-13 | 68.6 |
| MS.gene61183.t1 | MTR_5g093000 | 32.110 | 109 | 68 | 2 | 130 | 232 | 105 | 213 | 2.25e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61183.t1 | AT4G31930 | 54.468 | 235 | 104 | 2 | 1 | 233 | 1 | 234 | 1.36e-90 | 266 |
| MS.gene61183.t1 | AT1G80720 | 42.857 | 231 | 116 | 4 | 10 | 233 | 20 | 241 | 6.33e-61 | 191 |
| MS.gene61183.t1 | AT1G15870 | 42.667 | 225 | 117 | 6 | 17 | 233 | 21 | 241 | 1.86e-59 | 187 |
| MS.gene61183.t1 | AT1G80720 | 45.550 | 191 | 102 | 1 | 43 | 233 | 1 | 189 | 1.92e-59 | 186 |
| MS.gene61183.t1 | AT5G05990 | 29.924 | 264 | 147 | 11 | 1 | 232 | 1 | 258 | 2.47e-21 | 89.7 |
| MS.gene61183.t1 | AT5G02050 | 28.708 | 209 | 128 | 6 | 42 | 233 | 63 | 267 | 3.33e-21 | 89.4 |
| MS.gene61183.t1 | AT3G55605 | 30.488 | 164 | 103 | 4 | 79 | 233 | 97 | 258 | 1.17e-16 | 77.0 |
| MS.gene61183.t1 | AT4G32605 | 36.975 | 119 | 67 | 3 | 120 | 233 | 104 | 219 | 2.31e-15 | 72.8 |
| MS.gene61183.t1 | AT2G39795 | 27.315 | 216 | 132 | 9 | 33 | 233 | 45 | 250 | 1.33e-14 | 71.2 |
| MS.gene61183.t1 | AT2G39790 | 28.125 | 160 | 92 | 7 | 81 | 232 | 95 | 239 | 1.54e-12 | 65.5 |
Find 51 sgRNAs with CRISPR-Local
Find 93 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTACCTTGGACCTGATTTC+AGG | 0.173345 | 1.1:-8078341 | MS.gene61183:intron |
| GTTACGATGAAGGGGAAATT+TGG | 0.184899 | 1.1:-8078594 | MS.gene61183:CDS |
| CAAAACTTCTCCTGAATCTT+AGG | 0.262004 | 1.1:+8077647 | None:intergenic |
| GTTGGATTCAAATGGAGATT+TGG | 0.300681 | 1.1:+8078966 | None:intergenic |
| GAGAGAACATTACTGATTCT+AGG | 0.315397 | 1.1:+8079036 | None:intergenic |
| TTACGATGAAGGGGAAATTT+GGG | 0.341454 | 1.1:-8078593 | MS.gene61183:CDS |
| AGGATAGAATTGAACTTCTA+AGG | 0.343544 | 1.1:-8077556 | MS.gene61183:CDS |
| CTCAGCGTGGCCTGATAGTT+TGG | 0.345831 | 1.1:-8078412 | MS.gene61183:CDS |
| ATTGAAGCTACAATGTTTGA+TGG | 0.356300 | 1.1:-8078552 | MS.gene61183:CDS |
| GAATCTGAAGCCTAAGATTC+AGG | 0.365605 | 1.1:-8077657 | MS.gene61183:CDS |
| TTTGAACATGTTCCTGCATA+TGG | 0.377388 | 1.1:-8078528 | MS.gene61183:CDS |
| CGCAAAATGTTGGATTCAAA+TGG | 0.377903 | 1.1:+8078958 | None:intergenic |
| GCATATGGAGATGATAGTTC+AGG | 0.394315 | 1.1:-8078513 | MS.gene61183:CDS |
| TTCTGAACATCCAAACTATC+AGG | 0.406918 | 1.1:+8078402 | None:intergenic |
| CATAATTCAAACCTGAAATC+AGG | 0.448439 | 1.1:+8078330 | None:intergenic |
| TGAATACGCTCCTCCTCATC+AGG | 0.457720 | 1.1:-8078905 | MS.gene61183:intron |
| AATGTTCTCTCTCAAACCTC+AGG | 0.465355 | 1.1:-8079024 | MS.gene61183:CDS |
| ACGGAGAATTCGCAAAATGT+TGG | 0.477227 | 1.1:+8078948 | None:intergenic |
| TCTTCATCTCAGTTTGATTG+TGG | 0.483776 | 1.1:-8078478 | MS.gene61183:CDS |
| ATCGTAACCACTTGCTCACC+AGG | 0.494801 | 1.1:+8078609 | None:intergenic |
| TTGAAGCTACAATGTTTGAT+GGG | 0.509177 | 1.1:-8078551 | MS.gene61183:CDS |
| TGAGCAAGTGGTTACGATGA+AGG | 0.510024 | 1.1:-8078604 | MS.gene61183:CDS |
| CTTGATACTCGATTTCGTTA+CGG | 0.514717 | 1.1:+8078929 | None:intergenic |
| CTGAAATCAGGTCCAAGGTA+AGG | 0.518651 | 1.1:+8078342 | None:intergenic |
| GAGCAAGTGGTTACGATGAA+GGG | 0.521381 | 1.1:-8078603 | MS.gene61183:CDS |
| TGATTGTGGATATATCGAAA+GGG | 0.531126 | 1.1:-8078464 | MS.gene61183:CDS |
| GAACTATCATCTCCATATGC+AGG | 0.542924 | 1.1:+8078516 | None:intergenic |
| CATATGGAGATGATAGTTCA+GGG | 0.543217 | 1.1:-8078512 | MS.gene61183:CDS |
| AACGATTTGAATTCTGTCAC+AGG | 0.543255 | 1.1:+8078648 | None:intergenic |
| TTGATTGTGGATATATCGAA+AGG | 0.546720 | 1.1:-8078465 | MS.gene61183:CDS |
| AATTGAACTTCTAAGGTGGA+TGG | 0.561187 | 1.1:-8077549 | MS.gene61183:CDS |
| TTGCGAGTACTTGGACGCAA+GGG | 0.561929 | 1.1:-8077627 | MS.gene61183:CDS |
| GATTGTGGATATATCGAAAG+GGG | 0.572237 | 1.1:-8078463 | MS.gene61183:CDS |
| GATATATCGAAAGGGGAAGG+TGG | 0.596404 | 1.1:-8078456 | MS.gene61183:CDS |
| AGAATAGTGGGAACCTGATG+AGG | 0.597183 | 1.1:+8078892 | None:intergenic |
| CAAACCTGAAATCAGGTCCA+AGG | 0.599008 | 1.1:+8078337 | None:intergenic |
| TTTGCGAGTACTTGGACGCA+AGG | 0.601738 | 1.1:-8077628 | MS.gene61183:CDS |
| ATAGAATTGAACTTCTAAGG+TGG | 0.601785 | 1.1:-8077553 | MS.gene61183:CDS |
| TGCGAGTACTTGGACGCAAG+GGG | 0.604395 | 1.1:-8077626 | MS.gene61183:CDS |
| AGCAAGTGGTTACGATGAAG+GGG | 0.615389 | 1.1:-8078602 | MS.gene61183:CDS |
| TTTATTGTTGAAGAGAGACC+TGG | 0.619462 | 1.1:-8078627 | MS.gene61183:CDS |
| AGAGAGACCTGGTGAGCAAG+TGG | 0.623326 | 1.1:-8078616 | MS.gene61183:CDS |
| TACGATGAAGGGGAAATTTG+GGG | 0.627192 | 1.1:-8078592 | MS.gene61183:CDS |
| ATGTCGACTAGGCCTTACCT+TGG | 0.627849 | 1.1:-8078354 | MS.gene61183:CDS |
| GTGGATATATCGAAAGGGGA+AGG | 0.628718 | 1.1:-8078459 | MS.gene61183:CDS |
| ATAGTGGGAACCTGATGAGG+AGG | 0.642607 | 1.1:+8078895 | None:intergenic |
| AGCGAGGGAAGATGTCGACT+AGG | 0.671718 | 1.1:-8078365 | MS.gene61183:CDS |
| AGCTCTGTTACTGAAACCTG+AGG | 0.676912 | 1.1:+8079008 | None:intergenic |
| ACACGAGTATATGATGAACA+AGG | 0.706429 | 1.1:-8077576 | MS.gene61183:CDS |
| TAGAATTCGTCTGCTCAGCG+TGG | 0.712888 | 1.1:-8078425 | MS.gene61183:CDS |
| ATATGGAGATGATAGTTCAG+GGG | 0.730665 | 1.1:-8078511 | MS.gene61183:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATCTAAATCAAAAAAGTT+TGG | + | chr1.1:8078817-8078836 | None:intergenic | 15.0% |
| !!! | AAAAATAATTTTTTTCGAAG+TGG | - | chr1.1:8077883-8077902 | MS.gene61183:intron | 15.0% |
| !!! | AAAATAATTTTTTTCGAAGT+GGG | - | chr1.1:8077884-8077903 | MS.gene61183:intron | 15.0% |
| !!! | TTTGATCAATTTTGTTATTA+GGG | - | chr1.1:8077767-8077786 | MS.gene61183:intron | 15.0% |
| !!! | TTTTGATCAATTTTGTTATT+AGG | - | chr1.1:8077766-8077785 | MS.gene61183:intron | 15.0% |
| !! | AACATTTCAACTTTATTCAT+TGG | - | chr1.1:8078791-8078810 | MS.gene61183:intron | 20.0% |
| !! | TGAATAAAGTTGAAATGTTT+AGG | + | chr1.1:8078790-8078809 | None:intergenic | 20.0% |
| !!! | ATTTTTTTCATGTAGAATAG+TGG | + | chr1.1:8077740-8077759 | None:intergenic | 20.0% |
| !!! | TTTAAAACTTTGATAGCTTA+AGG | - | chr1.1:8078551-8078570 | MS.gene61183:CDS | 20.0% |
| !!! | TTTTCATCTGTTTAAATTGT+TGG | - | chr1.1:8078930-8078949 | MS.gene61183:CDS | 20.0% |
| !!! | TTTTTTTCATGTAGAATAGT+GGG | + | chr1.1:8077739-8077758 | None:intergenic | 20.0% |
| ! | AACAATCACATTGTGATATT+TGG | - | chr1.1:8078372-8078391 | MS.gene61183:CDS | 25.0% |
| ! | ATATCACAATGTGATTGTTA+TGG | + | chr1.1:8078371-8078390 | None:intergenic | 25.0% |
| !! | CAATTTTACTTACAAAAGCA+CGG | + | chr1.1:8078739-8078758 | None:intergenic | 25.0% |
| AACTACACAAAGACTGAATT+TGG | - | chr1.1:8078838-8078857 | MS.gene61183:intron | 30.0% | |
| AGGATAGAATTGAACTTCTA+AGG | - | chr1.1:8079060-8079079 | MS.gene61183:CDS | 30.0% | |
| ATTGAAGCTACAATGTTTGA+TGG | - | chr1.1:8078064-8078083 | MS.gene61183:intron | 30.0% | |
| ATTTGATGCATTAAGAGTTG+TGG | - | chr1.1:8078447-8078466 | MS.gene61183:CDS | 30.0% | |
| CATAATTCAAACCTGAAATC+AGG | + | chr1.1:8078289-8078308 | None:intergenic | 30.0% | |
| CATTGTGATATTTGGTATAG+TGG | - | chr1.1:8078380-8078399 | MS.gene61183:CDS | 30.0% | |
| CCAAACAACAAATGTACAAT+AGG | + | chr1.1:8078326-8078345 | None:intergenic | 30.0% | |
| TGATTGTGGATATATCGAAA+GGG | - | chr1.1:8078152-8078171 | MS.gene61183:intron | 30.0% | |
| TTGAAGCTACAATGTTTGAT+GGG | - | chr1.1:8078065-8078084 | MS.gene61183:intron | 30.0% | |
| TTGATTGTGGATATATCGAA+AGG | - | chr1.1:8078151-8078170 | MS.gene61183:intron | 30.0% | |
| ! | AAAGTTTTCATGTTAAAGCG+AGG | - | chr1.1:8078235-8078254 | MS.gene61183:intron | 30.0% |
| ! | AAGTTTTCATGTTAAAGCGA+GGG | - | chr1.1:8078236-8078255 | MS.gene61183:intron | 30.0% |
| ! | ATAGAATTGAACTTCTAAGG+TGG | - | chr1.1:8079063-8079082 | MS.gene61183:CDS | 30.0% |
| ! | CATTGCAAAACTTTTATCGA+AGG | - | chr1.1:8078861-8078880 | MS.gene61183:intron | 30.0% |
| ! | TGAAATGTTTAGGATCTGTT+AGG | + | chr1.1:8078780-8078799 | None:intergenic | 30.0% |
| !! | ATTGTACATTTGTTGTTTGG+TGG | - | chr1.1:8078326-8078345 | MS.gene61183:intron | 30.0% |
| !! | CCTATTGTACATTTGTTGTT+TGG | - | chr1.1:8078323-8078342 | MS.gene61183:intron | 30.0% |
| AACAAATGTACAATAGGCAC+AGG | + | chr1.1:8078320-8078339 | None:intergenic | 35.0% | |
| AACGATTTGAATTCTGTCAC+AGG | + | chr1.1:8077971-8077990 | None:intergenic | 35.0% | |
| ACACGAGTATATGATGAACA+AGG | - | chr1.1:8079040-8079059 | MS.gene61183:CDS | 35.0% | |
| ATATGGAGATGATAGTTCAG+GGG | - | chr1.1:8078105-8078124 | MS.gene61183:intron | 35.0% | |
| CAAAACTTCTCCTGAATCTT+AGG | + | chr1.1:8078972-8078991 | None:intergenic | 35.0% | |
| CAGTAACCAAAGTGAAAACA+AGG | + | chr1.1:8078643-8078662 | None:intergenic | 35.0% | |
| CATATGGAGATGATAGTTCA+GGG | - | chr1.1:8078104-8078123 | MS.gene61183:intron | 35.0% | |
| CGCAAAATGTTGGATTCAAA+TGG | + | chr1.1:8077661-8077680 | None:intergenic | 35.0% | |
| CTTGATACTCGATTTCGTTA+CGG | + | chr1.1:8077690-8077709 | None:intergenic | 35.0% | |
| GATTGTGGATATATCGAAAG+GGG | - | chr1.1:8078153-8078172 | MS.gene61183:intron | 35.0% | |
| GTTGGATTCAAATGGAGATT+TGG | + | chr1.1:8077653-8077672 | None:intergenic | 35.0% | |
| TCTTCATCTCAGTTTGATTG+TGG | - | chr1.1:8078138-8078157 | MS.gene61183:intron | 35.0% | |
| TTACGATGAAGGGGAAATTT+GGG | - | chr1.1:8078023-8078042 | MS.gene61183:intron | 35.0% | |
| TTCTGAACATCCAAACTATC+AGG | + | chr1.1:8078217-8078236 | None:intergenic | 35.0% | |
| TTTATTGTTGAAGAGAGACC+TGG | - | chr1.1:8077989-8078008 | MS.gene61183:intron | 35.0% | |
| TTTGAACATGTTCCTGCATA+TGG | - | chr1.1:8078088-8078107 | MS.gene61183:intron | 35.0% | |
| ! | CTGTTTAAATTGTTGGTTGC+AGG | - | chr1.1:8078937-8078956 | MS.gene61183:CDS | 35.0% |
| ! | TGATAGCTTAAGGATTTGCT+TGG | - | chr1.1:8078561-8078580 | MS.gene61183:CDS | 35.0% |
| !! | AATTGAACTTCTAAGGTGGA+TGG | - | chr1.1:8079067-8079086 | MS.gene61183:CDS | 35.0% |
| !! | GAGAGAACATTACTGATTCT+AGG | + | chr1.1:8077583-8077602 | None:intergenic | 35.0% |
| !! | TTGTTGTTTGGTGGAAATGA+AGG | - | chr1.1:8078335-8078354 | MS.gene61183:intron | 35.0% |
| !! | TTTTTCGAAGTGGGTAATTG+CGG | - | chr1.1:8077893-8077912 | MS.gene61183:intron | 35.0% |
| AATGTTCTCTCTCAAACCTC+AGG | - | chr1.1:8077592-8077611 | MS.gene61183:CDS | 40.0% | |
| ACGGAGAATTCGCAAAATGT+TGG | + | chr1.1:8077671-8077690 | None:intergenic | 40.0% | |
| CACAATTGCAGCTACATCAA+TGG | + | chr1.1:8078480-8078499 | None:intergenic | 40.0% | |
| CATTGATGTAGCTGCAATTG+TGG | - | chr1.1:8078478-8078497 | MS.gene61183:CDS | 40.0% | |
| GAACTATCATCTCCATATGC+AGG | + | chr1.1:8078103-8078122 | None:intergenic | 40.0% | |
| GCATATGGAGATGATAGTTC+AGG | - | chr1.1:8078103-8078122 | MS.gene61183:intron | 40.0% | |
| GTTACGATGAAGGGGAAATT+TGG | - | chr1.1:8078022-8078041 | MS.gene61183:intron | 40.0% | |
| TACGATGAAGGGGAAATTTG+GGG | - | chr1.1:8078024-8078043 | MS.gene61183:intron | 40.0% | |
| TGAATGCCTTCAAAACGACT+AGG | + | chr1.1:8078887-8078906 | None:intergenic | 40.0% | |
| ! | GAATCTGAAGCCTAAGATTC+AGG | - | chr1.1:8078959-8078978 | MS.gene61183:CDS | 40.0% |
| ! | GGATAGTCTCAAGTCTTTTG+TGG | - | chr1.1:8079088-8079107 | MS.gene61183:CDS | 40.0% |
| ! | TTTTCGAAGTGGGTAATTGC+GGG | - | chr1.1:8077894-8077913 | MS.gene61183:intron | 40.0% |
| !! | GTAATTGCGGGTTAGTGATT+TGG | - | chr1.1:8077906-8077925 | MS.gene61183:intron | 40.0% |
| !!! | ACGACACCTTGTTTTCACTT+TGG | - | chr1.1:8078634-8078653 | MS.gene61183:CDS | 40.0% |
| !!! | TCGTTTTGAAGGCATTCAGT+TGG | - | chr1.1:8078889-8078908 | MS.gene61183:intron | 40.0% |
| AGCAAGTGGTTACGATGAAG+GGG | - | chr1.1:8078014-8078033 | MS.gene61183:intron | 45.0% | |
| AGCTCTGTTACTGAAACCTG+AGG | + | chr1.1:8077611-8077630 | None:intergenic | 45.0% | |
| CAAACCTGAAATCAGGTCCA+AGG | + | chr1.1:8078282-8078301 | None:intergenic | 45.0% | |
| CGACTTTGCAGTCATAGTCA+AGG | - | chr1.1:8078522-8078541 | MS.gene61183:CDS | 45.0% | |
| CTGAAATCAGGTCCAAGGTA+AGG | + | chr1.1:8078277-8078296 | None:intergenic | 45.0% | |
| CTTACCTTGGACCTGATTTC+AGG | - | chr1.1:8078275-8078294 | MS.gene61183:intron | 45.0% | |
| GAGCAAGTGGTTACGATGAA+GGG | - | chr1.1:8078013-8078032 | MS.gene61183:intron | 45.0% | |
| GATATATCGAAAGGGGAAGG+TGG | - | chr1.1:8078160-8078179 | MS.gene61183:intron | 45.0% | |
| GTGGATATATCGAAAGGGGA+AGG | - | chr1.1:8078157-8078176 | MS.gene61183:intron | 45.0% | |
| TGAGCAAGTGGTTACGATGA+AGG | - | chr1.1:8078012-8078031 | MS.gene61183:intron | 45.0% | |
| ! | AGAATAGTGGGAACCTGATG+AGG | + | chr1.1:8077727-8077746 | None:intergenic | 45.0% |
| ! | GGAGAAGTTTTGCGAGTACT+TGG | - | chr1.1:8078980-8078999 | MS.gene61183:CDS | 45.0% |
| ATCGTAACCACTTGCTCACC+AGG | + | chr1.1:8078010-8078029 | None:intergenic | 50.0% | |
| TAGAATTCGTCTGCTCAGCG+TGG | - | chr1.1:8078191-8078210 | MS.gene61183:intron | 50.0% | |
| TGAATACGCTCCTCCTCATC+AGG | - | chr1.1:8077711-8077730 | MS.gene61183:intron | 50.0% | |
| TTGCGAGTACTTGGACGCAA+GGG | - | chr1.1:8078989-8079008 | MS.gene61183:CDS | 50.0% | |
| TTTGCGAGTACTTGGACGCA+AGG | - | chr1.1:8078988-8079007 | MS.gene61183:CDS | 50.0% | |
| ! | ATAGTGGGAACCTGATGAGG+AGG | + | chr1.1:8077724-8077743 | None:intergenic | 50.0% |
| ! | ATGTCGACTAGGCCTTACCT+TGG | - | chr1.1:8078262-8078281 | MS.gene61183:intron | 50.0% |
| !! | CGAAGGCCTAGTCGTTTTGA+AGG | - | chr1.1:8078878-8078897 | MS.gene61183:intron | 50.0% |
| AGAGAGACCTGGTGAGCAAG+TGG | - | chr1.1:8078000-8078019 | MS.gene61183:intron | 55.0% | |
| CTCAGCGTGGCCTGATAGTT+TGG | - | chr1.1:8078204-8078223 | MS.gene61183:intron | 55.0% | |
| GTAGCTGCAATTGTGGTCGC+AGG | - | chr1.1:8078485-8078504 | MS.gene61183:CDS | 55.0% | |
| TGCGAGTACTTGGACGCAAG+GGG | - | chr1.1:8078990-8079009 | MS.gene61183:CDS | 55.0% | |
| ! | AGCGAGGGAAGATGTCGACT+AGG | - | chr1.1:8078251-8078270 | MS.gene61183:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 8077520 | 8079118 | 8077520 | ID=MS.gene61183 |
| chr1.1 | mRNA | 8077520 | 8079118 | 8077520 | ID=MS.gene61183.t1;Parent=MS.gene61183 |
| chr1.1 | exon | 8078906 | 8079118 | 8078906 | ID=MS.gene61183.t1.exon1;Parent=MS.gene61183.t1 |
| chr1.1 | CDS | 8078906 | 8079118 | 8078906 | ID=cds.MS.gene61183.t1;Parent=MS.gene61183.t1 |
| chr1.1 | exon | 8078342 | 8078670 | 8078342 | ID=MS.gene61183.t1.exon2;Parent=MS.gene61183.t1 |
| chr1.1 | CDS | 8078342 | 8078670 | 8078342 | ID=cds.MS.gene61183.t1;Parent=MS.gene61183.t1 |
| chr1.1 | exon | 8077520 | 8077679 | 8077520 | ID=MS.gene61183.t1.exon3;Parent=MS.gene61183.t1 |
| chr1.1 | CDS | 8077520 | 8077679 | 8077520 | ID=cds.MS.gene61183.t1;Parent=MS.gene61183.t1 |
| Gene Sequence |
| Protein sequence |
